Citrus Sinensis ID: 040800

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKPVVKAFMDVPPKPTTQIIENLEAIMINLPNTGN
Secondary Structure (PSIPRED)
ccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcHHHHHHHHHHHHHcccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEHcHHHHHHHHHHHHHcccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHEEEEccccccccEEEccccEEEcccccccc
Coil and Loop (DISEMBL)
vfererlnghygATAFVVGNSFSAVPYLIIVSLVPGAIVyylpglhkgyqHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIItgsgiqgmmilgggffqlpndipkifwkypLYYIVFHKYAYQGMFknefeglkfdnnqdgeQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKPVVKAfmdvppkpttQIIENLEAIMINLPNTGN
Flexible Loop (DISEMBL)
vfererlnghyGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKPVVKAFMDVPPKPTTQIIENLEAIMINLPNTGN
Low Complexity Region (SEG)
VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKPVVKAFMDVPPKPTTQIIENLEAIMINLPNTGN
Disordered region (IsUnstruct)
*******NGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKPVVKAFMDVPPKPTTQIIENLEAIMIN******
Disordered Region (DISOPRED)
VFERER*NGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKL**********************************
Disordered Region (DISEMBL)
VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKPVVKAFMDVPPKPTTQIIENLEAIMINLPNTGN
Disordered Region (DISPRO)
VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKPVVKAFMDVPPKPTTQIIENLEAIMINL*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKPVVKAFMDVPPKPTTQIIENLEAIMINLPNTGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
Q8RXN0	703	ABC transporter G family	yes	no	0.883	0.280	0.485	2e-48
Q8RWI9	691	ABC transporter G family	no	no	0.874	0.282	0.407	3e-46
Q9C8J8	678	ABC transporter G family	no	no	0.865	0.284	0.407	9e-43
Q9C8K2	687	ABC transporter G family	no	no	0.874	0.283	0.393	3e-39
Q9ZUU9	730	ABC transporter G family	no	no	0.798	0.243	0.289	3e-21
Q9MAH4	590	ABC transporter G family	no	no	0.726	0.274	0.28	4e-16
Q9FLX5	589	ABC transporter G family	no	no	0.793	0.300	0.273	2e-14
Q3E9B8	624	ABC transporter G family	no	no	0.789	0.282	0.268	3e-14
Q9SIT6	649	ABC transporter G family	no	no	0.798	0.274	0.269	1e-13
Q9ZUT0	755	ABC transporter G family	no	no	0.645	0.190	0.296	3e-13

>sp|Q8RXN0|AB11G_ARATH ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1

 Score =  192 bits (487), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 98/202 (48%), Positives = 149/202 (73%), Gaps = 5/202 (2%)

Query: 1   VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
           VF+RERLNGHYG  AFV+ N+ SA P+LI+++ + G I Y++ GLH G+ H+ +FVL L+
Sbjct: 461 VFQRERLNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLY 520

Query: 61  ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
           A + +VESLMM +AS+VPN+L+GII G+GIQG+ +L  GFF+LPNDIPK FW+YP+ YI 
Sbjct: 521 ASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFFRLPNDIPKPFWRYPMSYIS 580

Query: 121 FHKYAYQGMFKNEFEGLKFDNNQD-----GEQILRDTWQLELGYSKWVDLAILFGMVVVY 175
           FH +A QG ++N+  GL FD+        GE +L + +Q++L  SKW++L+++  M+++Y
Sbjct: 581 FHFWALQGQYQNDLRGLTFDSQGSAFKIPGEYVLENVFQIDLHRSKWINLSVILSMIIIY 640

Query: 176 RLVFLGIIKATEKLKPVVKAFM 197
           R++F  +IK  E + P V+ ++
Sbjct: 641 RIIFFIMIKTNEDVTPWVRGYI 662

Required for the cuticle and pollen coat development by controlling cutin and maybe wax transport to the extracellular matrix. Involved in developmental plasticity and stress responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWI9|AB15G_ARATH ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2

 Score =  184 bits (468), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 82/201 (40%), Positives = 138/201 (68%), Gaps = 6/201 (2%)

Query: 1   VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
           VF +ERL+G+YG + +++ N  S+ P+L+ +S++ G I Y L     G+ H+ +F L +F
Sbjct: 439 VFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFSHYAFFCLNIF 498

Query: 61  ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
             + ++ESLMM+VAS+VPN+L+G+ITG+G+ G++++  GFF+L  D+PKIFW+YP+ YI 
Sbjct: 499 FSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLPDLPKIFWRYPVSYIS 558

Query: 121 FHKYAYQGMFKNEFEGLKF------DNNQDGEQILRDTWQLELGYSKWVDLAILFGMVVV 174
           +  +A QG +KN+F GL+F      +    GE+++   + +++ YSKW DLA +  ++V 
Sbjct: 559 YGSWAIQGGYKNDFLGLEFEPLFPGEPKMTGEEVIEKVFGVKVTYSKWWDLAAVVAILVC 618

Query: 175 YRLVFLGIIKATEKLKPVVKA 195
           YRL+F  ++K  E+  P +KA
Sbjct: 619 YRLLFFVVLKLRERAGPALKA 639

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8J8|AB13G_ARATH ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1

 Score =  173 bits (438), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 81/199 (40%), Positives = 125/199 (62%), Gaps = 6/199 (3%)

Query: 1   VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
           VF RERLNGHYG   + V N  S++P++I++ L   +I  Y+     G  HFFY  L L 
Sbjct: 434 VFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIYMVRFQSGGSHFFYNCLDLI 493

Query: 61  ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
             +  VES MM++AS+VPN+L+G++ G+G  G+M+L  GFF+   D+P +FW+YP+ YI 
Sbjct: 494 CAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSAGFFRFFPDLPMVFWRYPVSYIN 553

Query: 121 FHKYAYQGMFKNEFEGLKFDN------NQDGEQILRDTWQLELGYSKWVDLAILFGMVVV 174
           +  +A QG +KNE  G+++D+         GE IL+    +    SKW+DLA++  +++ 
Sbjct: 554 YGAWALQGAYKNEMIGVEYDSPLPLVPKMKGELILQTVLGINPESSKWLDLAVVMMILIG 613

Query: 175 YRLVFLGIIKATEKLKPVV 193
           YR+ F  I+K  EK+ PV+
Sbjct: 614 YRIAFFAILKFREKVFPVI 632

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8K2|AB12G_ARATH ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1

 Score =  161 bits (407), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 79/201 (39%), Positives = 139/201 (69%), Gaps = 6/201 (2%)

Query: 1   VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
           VF +ERL+G+YG + +++ N  S+ P+L+ ++L+ G+I Y +     G  H+ +F L +F
Sbjct: 440 VFYKERLSGYYGVSVYIISNYVSSFPFLVAIALITGSITYNMVKFRPGVSHWAFFCLNIF 499

Query: 61  ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
             + ++ESLMM+VASLVPN+L+G+ITG+GI G++++  GFF+L  D+PK+FW+YP+ ++ 
Sbjct: 500 FSVSVIESLMMVVASLVPNFLMGLITGAGIIGIIMMTSGFFRLLPDLPKVFWRYPISFMS 559

Query: 121 FHKYAYQGMFKNEFEGLKFD------NNQDGEQILRDTWQLELGYSKWVDLAILFGMVVV 174
           +  +A QG +KN+F GL+FD          GEQ++   + +++ +SKW DL+ +  ++V 
Sbjct: 560 YGSWAIQGAYKNDFLGLEFDPMFAGEPKMTGEQVINKIFGVQVTHSKWWDLSAIVLILVC 619

Query: 175 YRLVFLGIIKATEKLKPVVKA 195
           YR++F  ++K  E+ +P +KA
Sbjct: 620 YRILFFIVLKLKERAEPALKA 640

Involved in the secretion of cuticular wax from epidermal cells to the cuticle.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUU9|AB3G_ARATH ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2

 Score =  101 bits (252), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 96/183 (52%), Gaps = 5/183 (2%)

Query: 1   VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
           ++  E  N H GA  F++G    ++P+L ++S+    + Y++ GL   +    YFVL  F
Sbjct: 520 IYRSEASNQHSGAFVFLLGQFLGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFF 579

Query: 61  ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
            C+++ E LM+ +A +  +     +T   +  +M+L  G F++   +PK  W YP  YI 
Sbjct: 580 MCLLVNEGLMLFIACIWRDVYWSTLTLISVHVIMMLAAGHFRIRTALPKPVWTYPFAYIS 639

Query: 121 FHKYAYQGMFKNEFEGLKFDNNQ----DGEQILRDTWQLELGY-SKWVDLAILFGMVVVY 175
           FH Y+ +G+ +NE+ G  F   +     G Q ++  +Q+     +KW ++ +L  M   Y
Sbjct: 640 FHTYSIEGLLENEYLGEVFAVGEVRSISGYQAIQGNYQISPDTNAKWRNMLVLLAMAFGY 699

Query: 176 RLV 178
           RL+
Sbjct: 700 RLL 702

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MAH4|AB10G_ARATH ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1

 Score = 85.1 bits (209), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 96/175 (54%), Gaps = 13/175 (7%)

Query: 4   RERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACM 63
           RE     Y   ++V+ ++   +P+L+I+S++    VY+L GL +    F YF L+++  +
Sbjct: 415 RETSRRAYRVLSYVLADTLIFIPFLLIISMLFATPVYWLVGLRRELDGFLYFSLVIWIVL 474

Query: 64  MLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHK 123
           ++  S +   ++LVPN+++G    SG+ G   L  G+F   + IP ++W++ ++Y+   K
Sbjct: 475 LMSNSFVACFSALVPNFIMGTSVISGLMGSFFLFSGYFIAKDRIP-VYWEF-MHYLSLFK 532

Query: 124 YAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLV 178
           Y ++ +  NE+ G  F   QD    L+++        KW +L I+   +V YR++
Sbjct: 533 YPFECLMINEYRGDVFLKQQD----LKES-------QKWSNLGIMASFIVGYRVL 576

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLX5|AB8G_ARATH ABC transporter G family member 8 OS=Arabidopsis thaliana GN=ABCG8 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 99/194 (51%), Gaps = 17/194 (8%)

Query: 4   RERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACM 63
           RE  +G Y  ++ ++ N+   +PYL ++S++    VY+L GL   +Q F YFVL+++  +
Sbjct: 393 RETSSGIYRLSSHILANTLVFLPYLFVISIIYSVSVYFLIGLCPTWQAFGYFVLVIWIIL 452

Query: 64  MLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHK 123
           ++  S ++ ++SL PNY+ G    + +     L  G+F     +PK +W + +Y+   +K
Sbjct: 453 LMANSFVLFLSSLAPNYITGTSLVTILLAAFFLFSGYFISKESLPK-YWLF-MYFFSMYK 510

Query: 124 YAYQGMFKNEFEGLK------FDNNQ------DGEQILRDTWQLELGYSKWVDLAILFGM 171
           YA   +  NE+  L        +  Q       G  +L+     E    +W ++ +L G 
Sbjct: 511 YALDALLINEYSCLASKCLVWLEEAQTKICMVTGGDVLKKKGLHE--KQRWFNVYVLLGF 568

Query: 172 VVVYR-LVFLGIIK 184
            V+YR L FL +++
Sbjct: 569 FVLYRVLCFLALLR 582

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E9B8|AB23G_ARATH ABC transporter G family member 23 OS=Arabidopsis thaliana GN=ABCG23 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 102/194 (52%), Gaps = 18/194 (9%)

Query: 1   VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
           V  +E   G Y  +++++ N+ + VP+L +VSL+    VY++ GL+   Q F +FVL ++
Sbjct: 429 VLMKESSRGSYRISSYMIANTIAFVPFLFVVSLLFSIPVYWIVGLNPSIQAFSFFVLCVW 488

Query: 61  ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
             +++  SL++ ++++ P+++ G      + G   L  G+F     IPK  W + +YY+ 
Sbjct: 489 LIILMASSLVLFLSAVSPDFISGNSLICTVLGAFFLFSGYFIPKEKIPKP-WMF-MYYVS 546

Query: 121 FHKYAYQGMFKNEFEGLK---FDNNQ-----DGEQILRDTWQLELGYSK---WVDLAILF 169
            ++Y  + M  NE+  ++   F +        GE +L+     E G  K   W+++ I+ 
Sbjct: 547 LYRYPLESMVVNEYWSMREECFSSGNMGCLMTGEDVLK-----ERGLDKDTRWINVGIML 601

Query: 170 GMVVVYRLVFLGII 183
              V YR++  GI+
Sbjct: 602 AFFVFYRILCWGIL 615

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIT6|AB5G_ARATH ABC transporter G family member 5 OS=Arabidopsis thaliana GN=ABCG5 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 104/189 (55%), Gaps = 11/189 (5%)

Query: 4   RERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACM 63
           +E  +G Y  +++ V N    +P+L+I++++    VY+L GL+  +  F +F LL++  +
Sbjct: 453 KETSSGSYRVSSYAVANGLVYLPFLLILAILFSTPVYWLVGLNPSFMAFLHFSLLIWLIL 512

Query: 64  MLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHK 123
               S+++  ++LVPN+++G    SG+ G   L  G+F   ++IP  +W + ++YI   K
Sbjct: 513 YTANSVVVCFSALVPNFIVGNSVISGVMGSFFLFSGYFISNHEIPG-YWIF-MHYISLFK 570

Query: 124 YAYQGMFKNEF----EGLKFDNNQ---DGEQILRDTWQLELGYSKWVDLAILFGMVVVYR 176
           Y ++G   NEF    + L++   +     E +L++    E   S+W ++ I+   V++YR
Sbjct: 571 YPFEGFLINEFSKSNKCLEYGFGKCLVTEEDLLKEERYGE--ESRWRNVVIMLCFVLLYR 628

Query: 177 LVFLGIIKA 185
            +   I++ 
Sbjct: 629 FISYVILRC 637

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUT0|AB2G_ARATH ABC transporter G family member 2 OS=Arabidopsis thaliana GN=ABCG2 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 11/155 (7%)

Query: 1   VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
           +F RE     Y  +++V+  S  ++P LI++S    A  ++  GL  G   FF+F   + 
Sbjct: 528 IFMRETAYNAYRRSSYVLSQSIISIPALIVLSASFAATTFWAVGLDGGANGFFFFYFTIL 587

Query: 61  ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
           A      S +  ++ ++PN +LG      I    +L  GFF   + IP ++W +  +YI 
Sbjct: 588 ASFWAGSSFVTFLSGVIPNVMLGFTVVVAILAYFLLFSGFFISRDRIP-VYWLW-FHYIS 645

Query: 121 FHKYAYQGMFKNEFE--------GLK-FDNNQDGE 146
             KY Y+G+ +NEF+        G++ FDN+  GE
Sbjct: 646 LVKYPYEGVLQNEFQNPTRCFARGVQLFDNSPLGE 680

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
255569746	701	ATP-binding cassette transporter, putati	0.941	0.299	0.682	1e-87
224060415	622	white-brown-complex ABC transporter fami	0.887	0.318	0.736	2e-87
224060417	580	white-brown-complex ABC transporter fami	0.856	0.329	0.757	1e-85
296084731	592	unnamed protein product [Vitis vinifera]	0.941	0.354	0.672	3e-85
359497155	741	PREDICTED: ABC transporter G family memb	0.941	0.283	0.672	3e-85
359480500	741	PREDICTED: ABC transporter G family memb	0.941	0.283	0.668	5e-84
297741821	629	unnamed protein product [Vitis vinifera]	0.941	0.333	0.668	5e-84
296080892	382	unnamed protein product [Vitis vinifera]	0.941	0.549	0.672	1e-83
357476291	665	White-brown-complex ABC transporter fami	0.955	0.320	0.628	2e-83
359497157	565	PREDICTED: ABC transporter G family memb	0.941	0.371	0.654	3e-83

>gi|255569746|ref|XP_002525837.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223534842|gb|EEF36531.1| ATP-binding cassette transporter, putative [Ricinus communis]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 148/217 (68%), Positives = 180/217 (82%), Gaps = 7/217 (3%)

Query: 1   VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
           +F+RERLNGHYG  AFV+GN+FSA+P+L+++SLVPGAI Y+LPGLH G +HF YF+  LF
Sbjct: 473 IFQRERLNGHYGTAAFVLGNTFSAIPFLLLISLVPGAITYFLPGLHGGAEHFLYFICSLF 532

Query: 61  ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
           ACMMLVESLMM VAS+VPN+L+GIITG+GIQ +MIL GGFF+LP D+P  FWKYP++YI 
Sbjct: 533 ACMMLVESLMMTVASIVPNFLMGIITGAGIQSLMILAGGFFRLPRDLPAPFWKYPMHYIA 592

Query: 121 FHKYAYQGMFKNEFEGLKFDNNQ-------DGEQILRDTWQLELGYSKWVDLAILFGMVV 173
           FH+YAYQGMFKNEFEGL F NNQ        GE+ILR+ WQ++L YSKWVDLAIL GMVV
Sbjct: 593 FHRYAYQGMFKNEFEGLTFPNNQIGGPSEVSGEEILRNIWQVDLSYSKWVDLAILLGMVV 652

Query: 174 VYRLVFLGIIKATEKLKPVVKAFMDVPPKPTTQIIEN 210
           VYRL+FLGII   EK+KP++ A +   PK TTQI+EN
Sbjct: 653 VYRLLFLGIISIKEKVKPMITALISASPKQTTQIMEN 689

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060415|ref|XP_002300188.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222847446|gb|EEE84993.1| white-brown-complex ABC transporter family [Populus trichocarpa]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 151/205 (73%), Positives = 179/205 (87%), Gaps = 7/205 (3%)

Query: 1   VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
           VFERERLNGHYGATAFV+GN+FSA PYL+++S++PGAI YYLPGLHKGY+HF YFVL+LF
Sbjct: 418 VFERERLNGHYGATAFVLGNTFSAFPYLLLISVIPGAITYYLPGLHKGYEHFIYFVLVLF 477

Query: 61  ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
           ACMMLVESLMM VAS+VPN+L+GIITG+GIQ  MILGGGFF+LPND+P+ FWKYP+YYI 
Sbjct: 478 ACMMLVESLMMTVASMVPNFLMGIITGAGIQAFMILGGGFFRLPNDLPQPFWKYPMYYIA 537

Query: 121 FHKYAYQGMFKNEFEGLKFDNNQD-------GEQILRDTWQLELGYSKWVDLAILFGMVV 173
           FHKYAYQGMFKNEFEGL F +NQ        GEQILRD WQ+E+G SKWVDLAIL GMVV
Sbjct: 538 FHKYAYQGMFKNEFEGLTFPSNQTGGPRTIPGEQILRDRWQVEMGVSKWVDLAILLGMVV 597

Query: 174 VYRLVFLGIIKATEKLKPVVKAFMD 198
           +YR++FL IIK +EK+KP++ A + 
Sbjct: 598 LYRILFLVIIKTSEKIKPIIAAIVS 622

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060417|ref|XP_002300189.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222847447|gb|EEE84994.1| white-brown-complex ABC transporter family [Populus trichocarpa]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 150/198 (75%), Positives = 174/198 (87%), Gaps = 7/198 (3%)

Query: 1   VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
           VFERERLNGHYGATAFV GN+FSA PYL+++S++PGAI YYLPGLHKGY+HF YFVL+LF
Sbjct: 383 VFERERLNGHYGATAFVFGNTFSAFPYLLLISVIPGAITYYLPGLHKGYEHFIYFVLVLF 442

Query: 61  ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
           ACMMLVESLMM VAS+VPN+L+GIITG+GIQ  M+LGGGFF+LPND+P+ FWKYP+YYI 
Sbjct: 443 ACMMLVESLMMTVASVVPNFLMGIITGAGIQAFMVLGGGFFRLPNDLPQPFWKYPMYYIA 502

Query: 121 FHKYAYQGMFKNEFEGLKFDNNQD-------GEQILRDTWQLELGYSKWVDLAILFGMVV 173
           FHKYAYQGMFKNEFEGL F +NQ        GEQILRD WQ+E+G SKWVDLAIL GMVV
Sbjct: 503 FHKYAYQGMFKNEFEGLTFPSNQAGGPRTIPGEQILRDRWQVEMGVSKWVDLAILLGMVV 562

Query: 174 VYRLVFLGIIKATEKLKP 191
           +YR++FL IIK TEK+KP
Sbjct: 563 LYRILFLVIIKTTEKIKP 580

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084731|emb|CBI25872.3| unnamed protein product [Vitis vinifera]

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 146/217 (67%), Positives = 182/217 (83%), Gaps = 7/217 (3%)

Query: 1   VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
           +F RERLNGHYG  AFVVGN+FS++PYL+++SL+PG I YYL GLHKG++HF YF L+LF
Sbjct: 364 IFGRERLNGHYGVGAFVVGNTFSSIPYLLMISLIPGVIAYYLVGLHKGFEHFVYFALMLF 423

Query: 61  ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
            CMMLVESLMMIVAS+VP++L+GIITG+GIQG+M+L GGFF+LPND+PK FW+YP+YYI 
Sbjct: 424 VCMMLVESLMMIVASIVPDFLMGIITGAGIQGVMMLNGGFFRLPNDLPKPFWRYPMYYIA 483

Query: 121 FHKYAYQGMFKNEFEGLKFDNNQ-------DGEQILRDTWQLELGYSKWVDLAILFGMVV 173
           FHKYA QG +KNEF+GL F NNQ        GE+IL++ WQ+E GYSKWVD+AILFGMVV
Sbjct: 484 FHKYANQGFYKNEFQGLTFPNNQAGGPPTITGEEILQNVWQVETGYSKWVDVAILFGMVV 543

Query: 174 VYRLVFLGIIKATEKLKPVVKAFMDVPPKPTTQIIEN 210
           +YRL+FLGIIK  EK+KP++K  M   P+ + QIIEN
Sbjct: 544 LYRLLFLGIIKTVEKVKPMIKGLMVASPEKSKQIIEN 580

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497155|ref|XP_003635438.1| PREDICTED: ABC transporter G family member 11-like [Vitis vinifera]

 Score =  320 bits (819), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 146/217 (67%), Positives = 182/217 (83%), Gaps = 7/217 (3%)

Query: 1   VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
           +F RERLNGHYG  AFVVGN+FS++PYL+++SL+PG I YYL GLHKG++HF YF L+LF
Sbjct: 513 IFGRERLNGHYGVGAFVVGNTFSSIPYLLMISLIPGVIAYYLVGLHKGFEHFVYFALMLF 572

Query: 61  ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
            CMMLVESLMMIVAS+VP++L+GIITG+GIQG+M+L GGFF+LPND+PK FW+YP+YYI 
Sbjct: 573 VCMMLVESLMMIVASIVPDFLMGIITGAGIQGVMMLNGGFFRLPNDLPKPFWRYPMYYIA 632

Query: 121 FHKYAYQGMFKNEFEGLKFDNNQ-------DGEQILRDTWQLELGYSKWVDLAILFGMVV 173
           FHKYA QG +KNEF+GL F NNQ        GE+IL++ WQ+E GYSKWVD+AILFGMVV
Sbjct: 633 FHKYANQGFYKNEFQGLTFPNNQAGGPPTITGEEILQNVWQVETGYSKWVDVAILFGMVV 692

Query: 174 VYRLVFLGIIKATEKLKPVVKAFMDVPPKPTTQIIEN 210
           +YRL+FLGIIK  EK+KP++K  M   P+ + QIIEN
Sbjct: 693 LYRLLFLGIIKTVEKVKPMIKGLMVASPEKSKQIIEN 729

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480500|ref|XP_002269388.2| PREDICTED: ABC transporter G family member 11-like [Vitis vinifera]

 Score =  316 bits (809), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 145/217 (66%), Positives = 181/217 (83%), Gaps = 7/217 (3%)

Query: 1   VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
           +F RERLNGHYG  AFVVGN+FS++PYL+++SL+PG I YYL GLHKG++HF YF L+LF
Sbjct: 513 IFGRERLNGHYGVGAFVVGNTFSSIPYLLMISLIPGVIAYYLVGLHKGFEHFVYFALMLF 572

Query: 61  ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
            CMMLVESLMMIVAS+VP++L+GIITG+GIQG+M+L GGFF+LPND+PK FW+YP+YYI 
Sbjct: 573 VCMMLVESLMMIVASIVPDFLMGIITGAGIQGVMMLNGGFFRLPNDLPKPFWRYPMYYIA 632

Query: 121 FHKYAYQGMFKNEFEGLKFDNNQ-------DGEQILRDTWQLELGYSKWVDLAILFGMVV 173
           FHKYA QG +KNEF+GL F NNQ        GE+IL++ WQ+E GYSKWVD+AILFGMVV
Sbjct: 633 FHKYANQGFYKNEFQGLTFPNNQAGGPPTISGEEILQNVWQVETGYSKWVDVAILFGMVV 692

Query: 174 VYRLVFLGIIKATEKLKPVVKAFMDVPPKPTTQIIEN 210
           +YRL+FLGIIK  EK+K ++K  M   P+ + QIIEN
Sbjct: 693 LYRLLFLGIIKTVEKVKLMIKDLMVASPEKSKQIIEN 729

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741821|emb|CBI33134.3| unnamed protein product [Vitis vinifera]

 Score =  316 bits (809), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 145/217 (66%), Positives = 181/217 (83%), Gaps = 7/217 (3%)

Query: 1   VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
           +F RERLNGHYG  AFVVGN+FS++PYL+++SL+PG I YYL GLHKG++HF YF L+LF
Sbjct: 401 IFGRERLNGHYGVGAFVVGNTFSSIPYLLMISLIPGVIAYYLVGLHKGFEHFVYFALMLF 460

Query: 61  ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
            CMMLVESLMMIVAS+VP++L+GIITG+GIQG+M+L GGFF+LPND+PK FW+YP+YYI 
Sbjct: 461 VCMMLVESLMMIVASIVPDFLMGIITGAGIQGVMMLNGGFFRLPNDLPKPFWRYPMYYIA 520

Query: 121 FHKYAYQGMFKNEFEGLKFDNNQ-------DGEQILRDTWQLELGYSKWVDLAILFGMVV 173
           FHKYA QG +KNEF+GL F NNQ        GE+IL++ WQ+E GYSKWVD+AILFGMVV
Sbjct: 521 FHKYANQGFYKNEFQGLTFPNNQAGGPPTISGEEILQNVWQVETGYSKWVDVAILFGMVV 580

Query: 174 VYRLVFLGIIKATEKLKPVVKAFMDVPPKPTTQIIEN 210
           +YRL+FLGIIK  EK+K ++K  M   P+ + QIIEN
Sbjct: 581 LYRLLFLGIIKTVEKVKLMIKDLMVASPEKSKQIIEN 617

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296080892|emb|CBI18824.3| unnamed protein product [Vitis vinifera]

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 146/217 (67%), Positives = 182/217 (83%), Gaps = 7/217 (3%)

Query: 1   VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
           +F RERLNGHYG  AFVVGN+FS++PYL+++SL+PG I YYL GLHKG++HF YF L+LF
Sbjct: 15  IFGRERLNGHYGVGAFVVGNTFSSIPYLLMISLIPGVIAYYLVGLHKGFEHFVYFALMLF 74

Query: 61  ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
            CMMLVESLMMIVAS+VP++L+GIITG+GIQG+M+L GGFF+LPND+PK FW+YP+YYI 
Sbjct: 75  VCMMLVESLMMIVASIVPDFLMGIITGAGIQGVMMLNGGFFRLPNDLPKPFWRYPMYYIA 134

Query: 121 FHKYAYQGMFKNEFEGLKFDNNQ-------DGEQILRDTWQLELGYSKWVDLAILFGMVV 173
           FHKYA QG +KNEF+GL F NNQ        GE+IL++ WQ+E GYSKWVD+AILFGMVV
Sbjct: 135 FHKYANQGFYKNEFQGLTFPNNQAGGPPTITGEEILQNVWQVETGYSKWVDVAILFGMVV 194

Query: 174 VYRLVFLGIIKATEKLKPVVKAFMDVPPKPTTQIIEN 210
           +YRL+FLGIIK  EK+KP++K  M   P+ + QIIEN
Sbjct: 195 LYRLLFLGIIKTVEKVKPMIKGLMVASPEKSKQIIEN 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476291|ref|XP_003608431.1| White-brown-complex ABC transporter family [Medicago truncatula] gi|355509486|gb|AES90628.1| White-brown-complex ABC transporter family [Medicago truncatula]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 139/221 (62%), Positives = 184/221 (83%), Gaps = 8/221 (3%)

Query: 1   VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
           VFERERLNGHYG TA+V+GN+ SA+PYL+++SL+PGAI YY PGL KG++HF YF+  LF
Sbjct: 437 VFERERLNGHYGVTAYVIGNTLSAIPYLLMISLIPGAIAYYPPGLQKGFEHFIYFICALF 496

Query: 61  ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
           +C+MLVESLMMIVAS+VP++L+GIITG+GIQG+M+L GGFF+LPND+P  FW+YP++YI 
Sbjct: 497 SCLMLVESLMMIVASIVPDFLMGIITGAGIQGIMMLAGGFFRLPNDLPNPFWRYPMFYIS 556

Query: 121 FHKYAYQGMFKNEFEGLKFDNNQ--------DGEQILRDTWQLELGYSKWVDLAILFGMV 172
           FH+YA+QG +KNEFEGLKF+ ++         GE+ILR+ + +++ YSKWVDL +L GM+
Sbjct: 557 FHRYAFQGSYKNEFEGLKFERDEIGGSLNYISGEEILRNKFHVDMSYSKWVDLGVLLGMI 616

Query: 173 VVYRLVFLGIIKATEKLKPVVKAFMDVPPKPTTQIIENLEA 213
           V+YR+VFL IIK TEKLKP+V +FM V P+ T QI+EN  A
Sbjct: 617 VLYRVVFLIIIKTTEKLKPIVMSFMSVSPRQTRQILENPTA 657

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497157|ref|XP_003635439.1| PREDICTED: ABC transporter G family member 11-like, partial [Vitis vinifera]

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 142/217 (65%), Positives = 181/217 (83%), Gaps = 7/217 (3%)

Query: 1   VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
           +F RERLNGHYG  AFV+GNS S++PYL+++SL+PGAI YYL  L KG++HF YF +LLF
Sbjct: 342 IFGRERLNGHYGVGAFVIGNSLSSIPYLLMISLIPGAIAYYLVHLQKGFEHFVYFAILLF 401

Query: 61  ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
            CMMLVESLMM+VAS+VP++L+GIITG+GIQG+M+L GGFF+LPND+P  FWKYP+YYI 
Sbjct: 402 VCMMLVESLMMMVASIVPDFLMGIITGAGIQGVMMLCGGFFRLPNDLPNPFWKYPMYYIA 461

Query: 121 FHKYAYQGMFKNEFEGLKFDNNQ-------DGEQILRDTWQLELGYSKWVDLAILFGMVV 173
           FHKYA QG +KNEFEGL F NNQ        GE+IL++ WQ+E+GYSKW+DLAILFGMVV
Sbjct: 462 FHKYANQGFYKNEFEGLTFPNNQVGGAPTITGEEILQNVWQVEMGYSKWIDLAILFGMVV 521

Query: 174 VYRLVFLGIIKATEKLKPVVKAFMDVPPKPTTQIIEN 210
           +YRL+F+GIIK  EK+KP+++    VPP+ + QI+EN
Sbjct: 522 LYRLMFMGIIKTVEKVKPMIRGLFVVPPEKSKQIVEN 558

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
TAIR|locus:2030898	703	ABCG11 "ATP-binding cassette G	0.883	0.280	0.485	1.1e-55
TAIR|locus:2092960	691	ABCG15 "ATP-binding cassette G	0.874	0.282	0.407	1.6e-43
TAIR|locus:2033899	687	ABCG12 "ATP-binding cassette G	0.874	0.283	0.393	2.1e-42
TAIR|locus:2033939	678	ABCG13 "ATP-binding cassette G	0.865	0.284	0.407	7.4e-40
TAIR|locus:2046203	730	ABCG3 "ATP-binding cassette G3	0.825	0.252	0.280	2.5e-22
CGD|CAL0002254	579	orf19.3120 [Candida albicans (	0.811	0.312	0.297	1.3e-20
UNIPROTKB|Q5A0X6	579	CaO19.10632 "Putative uncharac	0.811	0.312	0.297	1.3e-20
TAIR|locus:2009640	590	ABCG10 "ATP-binding cassette G	0.739	0.279	0.275	9.1e-18
TAIR|locus:2150290	624	ABCG23 "ATP-binding cassette G	0.807	0.288	0.268	2.7e-17
TAIR|locus:2054142	649	ABCG5 "ATP-binding cassette G5	0.816	0.280	0.275	3.8e-17

TAIR|locus:2030898 ABCG11 "ATP-binding cassette G11" [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 98/202 (48%), Positives = 149/202 (73%)

Query:     1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
             VF+RERLNGHYG  AFV+ N+ SA P+LI+++ + G I Y++ GLH G+ H+ +FVL L+
Sbjct:   461 VFQRERLNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLY 520

Query:    61 ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
             A + +VESLMM +AS+VPN+L+GII G+GIQG+ +L  GFF+LPNDIPK FW+YP+ YI 
Sbjct:   521 ASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFFRLPNDIPKPFWRYPMSYIS 580

Query:   121 FHKYAYQGMFKNEFEGLKFDNNQD-----GEQILRDTWQLELGYSKWVDLAILFGMVVVY 175
             FH +A QG ++N+  GL FD+        GE +L + +Q++L  SKW++L+++  M+++Y
Sbjct:   581 FHFWALQGQYQNDLRGLTFDSQGSAFKIPGEYVLENVFQIDLHRSKWINLSVILSMIIIY 640

Query:   176 RLVFLGIIKATEKLKPVVKAFM 197
             R++F  +IK  E + P V+ ++
Sbjct:   641 RIIFFIMIKTNEDVTPWVRGYI 662

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009611 "response to wounding" evidence=IDA

GO:0009651 "response to salt stress" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0015245 "fatty acid transporter activity" evidence=TAS

GO:0015908 "fatty acid transport" evidence=TAS

GO:0080051 "cutin transport" evidence=IMP

TAIR|locus:2092960 ABCG15 "ATP-binding cassette G15" [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 1.6e-43, P = 1.6e-43
 Identities = 82/201 (40%), Positives = 138/201 (68%)

Query:     1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
             VF +ERL+G+YG + +++ N  S+ P+L+ +S++ G I Y L     G+ H+ +F L +F
Sbjct:   439 VFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFSHYAFFCLNIF 498

Query:    61 ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
               + ++ESLMM+VAS+VPN+L+G+ITG+G+ G++++  GFF+L  D+PKIFW+YP+ YI 
Sbjct:   499 FSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLPDLPKIFWRYPVSYIS 558

Query:   121 FHKYAYQGMFKNEFEGLKFDN------NQDGEQILRDTWQLELGYSKWVDLAILFGMVVV 174
             +  +A QG +KN+F GL+F+          GE+++   + +++ YSKW DLA +  ++V 
Sbjct:   559 YGSWAIQGGYKNDFLGLEFEPLFPGEPKMTGEEVIEKVFGVKVTYSKWWDLAAVVAILVC 618

Query:   175 YRLVFLGIIKATEKLKPVVKA 195
             YRL+F  ++K  E+  P +KA
Sbjct:   619 YRLLFFVVLKLRERAGPALKA 639

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0080167 "response to karrikin" evidence=IEP

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2033899 ABCG12 "ATP-binding cassette G12" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 2.1e-42, P = 2.1e-42
 Identities = 79/201 (39%), Positives = 139/201 (69%)

Query:     1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
             VF +ERL+G+YG + +++ N  S+ P+L+ ++L+ G+I Y +     G  H+ +F L +F
Sbjct:   440 VFYKERLSGYYGVSVYIISNYVSSFPFLVAIALITGSITYNMVKFRPGVSHWAFFCLNIF 499

Query:    61 ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
               + ++ESLMM+VASLVPN+L+G+ITG+GI G++++  GFF+L  D+PK+FW+YP+ ++ 
Sbjct:   500 FSVSVIESLMMVVASLVPNFLMGLITGAGIIGIIMMTSGFFRLLPDLPKVFWRYPISFMS 559

Query:   121 FHKYAYQGMFKNEFEGLKFDN------NQDGEQILRDTWQLELGYSKWVDLAILFGMVVV 174
             +  +A QG +KN+F GL+FD          GEQ++   + +++ +SKW DL+ +  ++V 
Sbjct:   560 YGSWAIQGAYKNDFLGLEFDPMFAGEPKMTGEQVINKIFGVQVTHSKWWDLSAIVLILVC 619

Query:   175 YRLVFLGIIKATEKLKPVVKA 195
             YR++F  ++K  E+ +P +KA
Sbjct:   620 YRILFFIVLKLKERAEPALKA 640

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0009651 "response to salt stress" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

TAIR|locus:2033939 ABCG13 "ATP-binding cassette G13" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 7.4e-40, P = 7.4e-40
 Identities = 81/199 (40%), Positives = 125/199 (62%)

Query:     1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
             VF RERLNGHYG   + V N  S++P++I++ L   +I  Y+     G  HFFY  L L 
Sbjct:   434 VFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIYMVRFQSGGSHFFYNCLDLI 493

Query:    61 ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
               +  VES MM++AS+VPN+L+G++ G+G  G+M+L  GFF+   D+P +FW+YP+ YI 
Sbjct:   494 CAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSAGFFRFFPDLPMVFWRYPVSYIN 553

Query:   121 FHKYAYQGMFKNEFEGLKFDN------NQDGEQILRDTWQLELGYSKWVDLAILFGMVVV 174
             +  +A QG +KNE  G+++D+         GE IL+    +    SKW+DLA++  +++ 
Sbjct:   554 YGAWALQGAYKNEMIGVEYDSPLPLVPKMKGELILQTVLGINPESSKWLDLAVVMMILIG 613

Query:   175 YRLVFLGIIKATEKLKPVV 193
             YR+ F  I+K  EK+ PV+
Sbjct:   614 YRIAFFAILKFREKVFPVI 632

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009651 "response to salt stress" evidence=IDA

GO:0080051 "cutin transport" evidence=IMP

GO:0080172 "petal epidermis patterning" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2046203 ABCG3 "ATP-binding cassette G3" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.5e-22, P = 2.5e-22
 Identities = 53/189 (28%), Positives = 99/189 (52%)

Query:     1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
             ++  E  N H GA  F++G    ++P+L ++S+    + Y++ GL   +    YFVL  F
Sbjct:   520 IYRSEASNQHSGAFVFLLGQFLGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFF 579

Query:    61 ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
              C+++ E LM+ +A +  +     +T   +  +M+L  G F++   +PK  W YP  YI 
Sbjct:   580 MCLLVNEGLMLFIACIWRDVYWSTLTLISVHVIMMLAAGHFRIRTALPKPVWTYPFAYIS 639

Query:   121 FHKYAYQGMFKNEFEGLKFDNNQ----DGEQILRDTWQLELGYS-KWVDLAILFGMVVVY 175
             FH Y+ +G+ +NE+ G  F   +     G Q ++  +Q+    + KW ++ +L  M   Y
Sbjct:   640 FHTYSIEGLLENEYLGEVFAVGEVRSISGYQAIQGNYQISPDTNAKWRNMLVLLAMAFGY 699

Query:   176 RLVFLGIIK 184
             RL+   +++
Sbjct:   700 RLLVYVLLR 708

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

CGD|CAL0002254 orf19.3120 [Candida albicans (taxid:5476)]

 Score = 251 (93.4 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 59/198 (29%), Positives = 106/198 (53%)

Query:     2 FERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFA 61
             +++ER+NG YG  AF + N    +P+L +++ V   I +++   H+    F+Y+++ LF 
Sbjct:   381 YKKERMNGLYGPLAFSLANFLVGLPFLFLIAAVFSVITFFMVNFHQTASGFWYYLMWLFL 440

Query:    62 CMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVF 121
              ++  ES+   +AS+ PN+++ +   +   G+ +  GGF  +P++I  +FW Y  Y+I +
Sbjct:   441 DLVAAESMTTFIASVFPNFVVSLAITAFANGLWMAVGGFL-VPSNILNVFWYYTFYWIDY 499

Query:   122 HKYAYQGMFKNEFEGLKFDNNQDGEQILRDT---WQ--------LE-LGYS---KWVDLA 166
              +Y +QGM  NEF   +F    DG   + D+    Q        LE LGY    K + + 
Sbjct:   500 QRYVFQGMIFNEFTNREFRCG-DGCHCMYDSPLASQCKISGKAVLESLGYGNYDKGLWIG 558

Query:   167 ILFGMVVVYRLVFLGIIK 184
             +L  +V VYR     ++K
Sbjct:   559 VLIALVFVYRFATYIVLK 576

GO:0005524 "ATP binding" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q5A0X6 CaO19.10632 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 251 (93.4 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 59/198 (29%), Positives = 106/198 (53%)

Query:     2 FERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFA 61
             +++ER+NG YG  AF + N    +P+L +++ V   I +++   H+    F+Y+++ LF 
Sbjct:   381 YKKERMNGLYGPLAFSLANFLVGLPFLFLIAAVFSVITFFMVNFHQTASGFWYYLMWLFL 440

Query:    62 CMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVF 121
              ++  ES+   +AS+ PN+++ +   +   G+ +  GGF  +P++I  +FW Y  Y+I +
Sbjct:   441 DLVAAESMTTFIASVFPNFVVSLAITAFANGLWMAVGGFL-VPSNILNVFWYYTFYWIDY 499

Query:   122 HKYAYQGMFKNEFEGLKFDNNQDGEQILRDT---WQ--------LE-LGYS---KWVDLA 166
              +Y +QGM  NEF   +F    DG   + D+    Q        LE LGY    K + + 
Sbjct:   500 QRYVFQGMIFNEFTNREFRCG-DGCHCMYDSPLASQCKISGKAVLESLGYGNYDKGLWIG 558

Query:   167 ILFGMVVVYRLVFLGIIK 184
             +L  +V VYR     ++K
Sbjct:   559 VLIALVFVYRFATYIVLK 576

GO:0005524 "ATP binding" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TAIR|locus:2009640 ABCG10 "ATP-binding cassette G10" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 9.1e-18, P = 9.1e-18
 Identities = 49/178 (27%), Positives = 97/178 (54%)

Query:     1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
             +  RE     Y   ++V+ ++   +P+L+I+S++    VY+L GL +    F YF L+++
Sbjct:   412 ILMRETSRRAYRVLSYVLADTLIFIPFLLIISMLFATPVYWLVGLRRELDGFLYFSLVIW 471

Query:    61 ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
               +++  S +   ++LVPN+++G    SG+ G   L  G+F   + IP ++W++ ++Y+ 
Sbjct:   472 IVLLMSNSFVACFSALVPNFIMGTSVISGLMGSFFLFSGYFIAKDRIP-VYWEF-MHYLS 529

Query:   121 FHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLV 178
               KY ++ +  NE+ G  F   QD    L+++        KW +L I+   +V YR++
Sbjct:   530 LFKYPFECLMINEYRGDVFLKQQD----LKES-------QKWSNLGIMASFIVGYRVL 576

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TAIR|locus:2150290 ABCG23 "ATP-binding cassette G23" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 51/190 (26%), Positives = 103/190 (54%)

Query:     1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
             V  +E   G Y  +++++ N+ + VP+L +VSL+    VY++ GL+   Q F +FVL ++
Sbjct:   429 VLMKESSRGSYRISSYMIANTIAFVPFLFVVSLLFSIPVYWIVGLNPSIQAFSFFVLCVW 488

Query:    61 ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPND-IPKIFWKYPLYYI 119
               +++  SL++ ++++ P+++ G      + G   L  G+F +P + IPK  W + +YY+
Sbjct:   489 LIILMASSLVLFLSAVSPDFISGNSLICTVLGAFFLFSGYF-IPKEKIPKP-WMF-MYYV 545

Query:   120 VFHKYAYQGMFKNEFEGLK---FDNNQDGEQILRDTWQLELGYSK---WVDLAILFGMVV 173
               ++Y  + M  NE+  ++   F +   G  +  +    E G  K   W+++ I+    V
Sbjct:   546 SLYRYPLESMVVNEYWSMREECFSSGNMGCLMTGEDVLKERGLDKDTRWINVGIMLAFFV 605

Query:   174 VYRLVFLGII 183
              YR++  GI+
Sbjct:   606 FYRILCWGIL 615

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TAIR|locus:2054142 ABCG5 "ATP-binding cassette G5" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 3.8e-17, P = 3.8e-17
 Identities = 52/189 (27%), Positives = 104/189 (55%)

Query:     1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
             +  +E  +G Y  +++ V N    +P+L+I++++    VY+L GL+  +  F +F LL++
Sbjct:   450 ILMKETSSGSYRVSSYAVANGLVYLPFLLILAILFSTPVYWLVGLNPSFMAFLHFSLLIW 509

Query:    61 ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
               +    S+++  ++LVPN+++G    SG+ G   L  G+F   ++IP  +W + ++YI 
Sbjct:   510 LILYTANSVVVCFSALVPNFIVGNSVISGVMGSFFLFSGYFISNHEIPG-YWIF-MHYIS 567

Query:   121 FHKYAYQGMFKNEF-EGLKFDNNQDGEQILRDTWQL-ELGY---SKWVDLAILFGMVVVY 175
               KY ++G   NEF +  K      G+ ++ +   L E  Y   S+W ++ I+   V++Y
Sbjct:   568 LFKYPFEGFLINEFSKSNKCLEYGFGKCLVTEEDLLKEERYGEESRWRNVVIMLCFVLLY 627

Query:   176 RLVFLGIIK 184
             R +   I++
Sbjct:   628 RFISYVILR 636

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.I.3594.1 white-brown-complex ABC transporter family (622 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	7e-20
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	9e-17
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	1e-10
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	2e-07
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	3e-07
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	8e-04

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 87.0 bits (216), Expect = 7e-20
 Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 16/191 (8%)

Query: 1   VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
           VF RE  +G Y  +A+ +  + + +P  II+  +  +I Y++ GL  G  HF  F+ L+ 
Sbjct: 421 VFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVT 480

Query: 61  ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
               +  S   +++    +  + +  G       +L GGFF   + IP +++K+ L Y+ 
Sbjct: 481 LVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIP-VYFKW-LSYLS 538

Query: 121 FHKYAYQGMFKNEFEGLK----FDNN------QDGEQILRDTWQLELGYSK-WVDLAILF 169
           + +Y  +G+  N++  +        N        GE IL     L    +  ++DL  L 
Sbjct: 539 WFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILE---TLSFRNADLYLDLIGLV 595

Query: 170 GMVVVYRLVFL 180
            ++  +RL+  
Sbjct: 596 ILIFFFRLLAY 606

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score = 75.4 bits (186), Expect = 9e-17
 Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 4/134 (2%)

Query: 1   VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
           V ERE  +  Y  +A+V+      +P  ++ +++   IVY++ GL      FF F+L+L 
Sbjct: 81  VLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVYFMVGLP--VSRFFLFLLVLL 138

Query: 61  ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
              +    L + +A+L P++      G  +   ++L  GFF   + +P   W   +YY+ 
Sbjct: 139 LTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSGFFIPVDSMPG--WLQWIYYLN 196

Query: 121 FHKYAYQGMFKNEF 134
              YA + +  NEF
Sbjct: 197 PLTYAIEALRANEF 210

Length = 210

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 51/227 (22%), Positives = 98/227 (43%), Gaps = 42/227 (18%)

Query: 1   VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
           + E+ R    Y  +A  + +  S +P+ II S+V   I+Y++    +    FF+++L+LF
Sbjct: 481 IVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILF 540

Query: 61  ACMMLVESLMMIVASLVPNYLLGIITGSGI--QGMMILGGGFFQLPN-DIPKIFWKYPLY 117
            C + +  L   + ++    L   +T + I    + I  G  F +P   +   + K+ +Y
Sbjct: 541 ICTLAMSHLFRSIGAVTKT-LSEAMTPAAILLLALSIYTG--FAIPRPSMLG-WSKW-IY 595

Query: 118 YIVFHKYAYQGMFKNEFEGLKFDNNQ------------------------------DGEQ 147
           Y+    YA++ +  NEF G +F+ +Q                              DG+ 
Sbjct: 596 YVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDD 655

Query: 148 ILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKPVVK 194
            L+ ++Q    + KW +  I+ G  V +   F+ I+  TE  K   +
Sbjct: 656 YLKLSFQYYNSH-KWRNFGIIIGFTVFF--FFVYIL-LTEFNKGAKQ 698

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 1    VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
            VF RER  G Y A  + +      +PY++I +     IVY +         FF+F  + F
Sbjct: 1276 VFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISF 1335

Query: 61   ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPK----IFWKYPL 116
               +      M+  SL PN  +  I  +   G+  L  GFF     IPK     +W  P+
Sbjct: 1336 FSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPV 1395

Query: 117  YYIVF 121
             + V+
Sbjct: 1396 AWTVY 1400

Length = 1470

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 9/136 (6%)

Query: 1    VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGL-------HKGYQHFF 53
               RER +  +   AF+       +PY ++   +   I YY  G         + ++   
Sbjct: 1158 YEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGV 1217

Query: 54   YFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWK 113
             F LL     +   +L  +V S  PN     +  S +  M +   G    P+ +P  FW 
Sbjct: 1218 LFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPG-FWI 1276

Query: 114  YPLYYIVFHKYAYQGM 129
            + +Y      Y  Q +
Sbjct: 1277 F-MYRCSPFTYLVQAL 1291

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 40/188 (21%), Positives = 79/188 (42%), Gaps = 13/188 (6%)

Query: 1   VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLF 60
           VF ++R    +    F +      +P  II S+V   I YY  G       FF  +LL+F
Sbjct: 598 VFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVF 657

Query: 61  ACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIV 120
               +   +  ++AS+    ++    G+ +  ++ L GGF     +IP  +W++  Y++ 
Sbjct: 658 LIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPN-WWEWA-YWVS 715

Query: 121 FHKYAYQGMFKNEFEGLKFDNNQDGEQILR---------DTWQLELGYSKWVDLAILFGM 171
              Y +  +  NE    ++ N    +   R         D +  +  Y  W+ +  L G 
Sbjct: 716 PLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWY--WIGVGALLGF 773

Query: 172 VVVYRLVF 179
            +++ ++F
Sbjct: 774 TILFNVLF 781

Length = 1470

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PLN03140	1470	ABC transporter G family member; Provisional	99.98
PLN03211	659	ABC transporter G-25; Provisional	99.98
PLN03140	1470	ABC transporter G family member; Provisional	99.97
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.96
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.96
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.96
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.91
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	99.67
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	99.58
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	99.58
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	99.55
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	99.53
PRK15066	257	inner membrane transport permease; Provisional	99.34
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	99.33
TIGR01248	152	drrC daunorubicin resistance protein C. The model	99.33
COG0842	286	ABC-type multidrug transport system, permease comp	99.26
PF12698	344	ABC2_membrane_3: ABC-2 family transporter protein;	98.71
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	98.66
COG1682	263	TagG ABC-type polysaccharide/polyol phosphate expo	98.42
PF06422	103	PDR_CDR: CDR ABC transporter; InterPro: IPR010929	98.24
PRK15176	264	Vi polysaccharide export inner membrane protein Ve	98.13
PF12679	277	ABC2_membrane_2: ABC-2 family transporter protein	98.09
COG1511	780	Predicted membrane protein [Function unknown]	97.72
COG1277	278	NosY ABC-type transport system involved in multi-c	97.32
PF08370	65	PDR_assoc: Plant PDR ABC transporter associated; I	97.24
PF12051	382	DUF3533: Protein of unknown function (DUF3533); In	97.21
PF03379	215	CcmB: CcmB protein; InterPro: IPR003544 Within mit	96.47
COG4587	268	ABC-type uncharacterized transport system, permeas	96.19
PF06182	229	ABC2_membrane_6: ABC-2 family transporter protein;	96.19
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	95.98
COG4200	239	Uncharacterized protein conserved in bacteria [Fun	95.54
TIGR03733	248	lanti_perm_MutG lantibiotic protection ABC transpo	95.39
TIGR01190	211	ccmB heme exporter protein CcmB. This model descri	94.95
COG1668	407	NatB ABC-type Na+ efflux pump, permease component	94.32
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	93.84
PF12730	232	ABC2_membrane_4: ABC-2 family transporter protein	92.53
TIGR03732	241	lanti_perm_MutE lantibiotic protection ABC transpo	92.34
COG2386	221	CcmB ABC-type transport system involved in cytochr	91.01
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	86.2

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=3e-33  Score=258.05  Aligned_cols=186  Identities=24%  Similarity=0.473  Sum_probs=173.7

Q ss_pred             CeeeeccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 040800            1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNY   80 (223)
Q Consensus         1 vf~rE~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~   80 (223)
                      +|+||+.+|+|++.+|++||++.|+|+.++.+++|.++.|+++|+++++.+|+.+++++++..+++.++|+++++++|+.
T Consensus       421 v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~  500 (617)
T TIGR00955       421 VFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSST  500 (617)
T ss_pred             HHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcc-c---------CCCCHHHHHh
Q 040800           81 LLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKF-D---------NNQDGEQILR  150 (223)
Q Consensus        81 ~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~-~---------c~~~g~~~L~  150 (223)
                      ..|+.+++++..++++|+|++++.++||+ ||+| ++|+||++|++|+++.|||+|.++ +         |+.+|+++|+
T Consensus       501 ~~a~~~~~~~~~~~~lf~G~~i~~~~ip~-~~~W-~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~  578 (617)
T TIGR00955       501 SMALTVGPPFVIPFLLFGGFFINSDSIPV-YFKW-LSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILE  578 (617)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccChhhccH-HHHH-HHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHH
Confidence            99999999999999999999999999999 5665 999999999999999999998764 3         4457899999


Q ss_pred             hhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 040800          151 DTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLK  190 (223)
Q Consensus       151 ~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~  190 (223)
                      . +|++.++ .|.++++|++++++|+++++++|+++.+++
T Consensus       579 ~-~g~~~~~-~~~~~~il~~~~~~~~~l~~~~L~~~~~~~  616 (617)
T TIGR00955       579 T-LSFRNAD-LYLDLIGLVILIFFFRLLAYFALRIRIRRK  616 (617)
T ss_pred             h-cCCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            8 8888775 899999999999999999999999876544

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=3.7e-32  Score=268.27  Aligned_cols=188  Identities=22%  Similarity=0.475  Sum_probs=175.9

Q ss_pred             CeeeeccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 040800            1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNY   80 (223)
Q Consensus         1 vf~rE~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~   80 (223)
                      ||+||+.+|+|++++|++|++++|+|+.++.+++|.+|+||++|+++++++|+.|++++++..+++.+++.++++++||.
T Consensus       481 i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~  560 (1394)
T TIGR00956       481 IVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTL  560 (1394)
T ss_pred             ceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCC------------------
Q 040800           81 LLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNN------------------  142 (223)
Q Consensus        81 ~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~------------------  142 (223)
                      ..|+.+++++..++++++|+++|.++||+ ||+| ++|+||++|++|+++.|||+|.+++|+                  
T Consensus       561 ~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~-~~~W-~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~  638 (1394)
T TIGR00956       561 SEAMTPAAILLLALSIYTGFAIPRPSMLG-WSKW-IYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKV  638 (1394)
T ss_pred             HHHHHHHHHHHHHHHHHcccccChhhccH-HHHH-HHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCcc
Confidence            99999999999999999999999999999 5665 999999999999999999999887773                  


Q ss_pred             ------------CCHHHHHhhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 040800          143 ------------QDGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKP  191 (223)
Q Consensus       143 ------------~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~  191 (223)
                                  .+|+++|+..++++.++ .|.|+++|++++++|++++++++.+.++...
T Consensus       639 C~~~g~~~g~~~~~G~~~L~~~~~~~~~~-~w~n~gil~~~~v~f~~~~~l~l~~~~~~~~  698 (1394)
T TIGR00956       639 CTVVGAEPGQDYVDGDDYLKLSFQYYNSH-KWRNFGIIIGFTVFFFFVYILLTEFNKGAKQ  698 (1394)
T ss_pred             ccCCCCcCCcccccHHHHHHhcCCcccch-hhHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence                        17889999768888776 9999999999999999999999999774443

>PLN03140 ABC transporter G family member; Provisional

Probab=99.98  E-value=6.7e-32  Score=266.28  Aligned_cols=188  Identities=23%  Similarity=0.428  Sum_probs=175.6

Q ss_pred             CeeeeccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 040800            1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNY   80 (223)
Q Consensus         1 vf~rE~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~   80 (223)
                      ||+||+.+|+|++.+|++|+++.|+|+.++++++|.++.|+++|++++++.|+.+++++++..++++++|+++++++||.
T Consensus      1276 vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~ 1355 (1470)
T PLN03140       1276 VFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQ 1355 (1470)
T ss_pred             HHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCC-------CCHHHHHhhhc
Q 040800           81 LLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNN-------QDGEQILRDTW  153 (223)
Q Consensus        81 ~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~-------~~g~~~L~~~~  153 (223)
                      ..|..+++++..++++|+|+++|.+.||. ||+| ++|+||++|++++++.+||+|.++.|+       ++++++++..+
T Consensus      1356 ~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~-~~~W-~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 1433 (1470)
T PLN03140       1356 QVAAIFAAAFYGLFNLFSGFFIPRPKIPK-WWVW-YYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHY 1433 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHeeeccChHHCch-HHHH-HHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhc
Confidence            99999999999999999999999999999 7875 999999999999999999999876543       24678877779


Q ss_pred             CCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 040800          154 QLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKP  191 (223)
Q Consensus       154 ~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~  191 (223)
                      |+++++ .|.+++++++|+++|++++++.+++.+.+|+
T Consensus      1434 g~~~~~-~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140       1434 GYDPDF-MGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred             CcCccc-ccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence            999886 9999999999999999999999999887653

>PLN03211 ABC transporter G-25; Provisional

Probab=99.98  E-value=1.4e-31  Score=247.73  Aligned_cols=181  Identities=17%  Similarity=0.317  Sum_probs=160.3

Q ss_pred             CeeeeccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 040800            1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNY   80 (223)
Q Consensus         1 vf~rE~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~   80 (223)
                      ||+||+.+|+|++.+|++||++.|+|+.++.+++|.+|+||++|+++++++|+.|++++++..++++++|+++++++||.
T Consensus       467 v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~  546 (659)
T PLN03211        467 IFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDA  546 (659)
T ss_pred             HHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCc-----ccCCC------CHHHHH
Q 040800           81 LLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLK-----FDNNQ------DGEQIL  149 (223)
Q Consensus        81 ~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~-----~~c~~------~g~~~L  149 (223)
                      ..|+.+++++..++++|||++++  +||+ ||+| ++|+||++|++|+++.|||++.+     +.|+.      .++.++
T Consensus       547 ~~a~~~~~~~~~~~~lfsGf~i~--~ip~-~~~W-~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~  622 (659)
T PLN03211        547 KKASTIVTVTMLAFVLTGGFYVH--KLPS-CMAW-IKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFV  622 (659)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHh--hchH-HHHH-HHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccc
Confidence            99999999999999999999997  7998 6775 99999999999999999997643     24642      123334


Q ss_pred             hhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040800          150 RDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATE  187 (223)
Q Consensus       150 ~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~  187 (223)
                      +. ...+.. ..|.++++|+++.++++++++++|++.+
T Consensus       623 ~~-~~~~~~-~~~~~~~~l~~~~~~~~~l~~~~L~~~~  658 (659)
T PLN03211        623 EE-DVAGQI-SPATSVSVLIFMFVGYRLLAYLALRRIK  658 (659)
T ss_pred             hh-hhhccc-chHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33 223333 3899999999999999999999998654

>PLN03140 ABC transporter G family member; Provisional

Probab=99.97  E-value=3.9e-31  Score=260.91  Aligned_cols=185  Identities=21%  Similarity=0.391  Sum_probs=172.0

Q ss_pred             CeeeeccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 040800            1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNY   80 (223)
Q Consensus         1 vf~rE~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~   80 (223)
                      ||+||+..++|++++|++|+++.++|+.++.+++|.+|.||++|+++++++|+.|++++++..+++.+++.++++++++.
T Consensus       598 vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~  677 (1470)
T PLN03140        598 VFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTM  677 (1470)
T ss_pred             hhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCccc---C----CCCHHHHHhhhc
Q 040800           81 LLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFD---N----NQDGEQILRDTW  153 (223)
Q Consensus        81 ~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~---c----~~~g~~~L~~~~  153 (223)
                      ..|+.+++++..++++++||++|.++||+ ||+| ++|+||++|++||++.|||.+..+.   |    ..+|+++|+. +
T Consensus       678 ~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~-w~~W-~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~-~  754 (1470)
T PLN03140        678 IIANTGGALVLLLVFLLGGFILPKGEIPN-WWEW-AYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNI-F  754 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHccceechHhCch-HHHH-HHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHh-c
Confidence            99999999999999999999999999999 5665 9999999999999999999776532   2    2489999987 8


Q ss_pred             CCccCc-hhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040800          154 QLELGY-SKWVDLAILFGMVVVYRLVFLGIIKATEK  188 (223)
Q Consensus       154 ~~~~~~-~~~~~~~iL~~~~v~~~~la~~~l~~~~~  188 (223)
                      |++.++ +.|.++++|++++++|++++++++++.+.
T Consensus       755 g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~  790 (1470)
T PLN03140        755 DVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNP  790 (1470)
T ss_pred             CcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            887654 57999999999999999999999998764

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.96  E-value=1.5e-29  Score=249.86  Aligned_cols=181  Identities=18%  Similarity=0.261  Sum_probs=166.2

Q ss_pred             eeeeccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 040800            2 FERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQH-------FFYFVLLLFACMMLVESLMMIVA   74 (223)
Q Consensus         2 f~rE~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~-------~~~~~~~~~l~~~~~~~lg~~i~   74 (223)
                      ++||+.+|+|++.+|++|+++.|+|+.++.+++|.+++|+++|+++++..       |+.+++++++..+++.++|++++
T Consensus      1159 ~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~ 1238 (1394)
T TIGR00956      1159 EVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVI 1238 (1394)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999877655       99999999999999999999999


Q ss_pred             HhccchHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCC------------
Q 040800           75 SLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNN------------  142 (223)
Q Consensus        75 a~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~------------  142 (223)
                      +++|+...|+.+++++..++++|||+++|.++||. +|+| ++|+||++|++++++.++|+|.++.|.            
T Consensus      1239 ~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~-~~~w-~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~ 1316 (1394)
T TIGR00956      1239 SFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPG-FWIF-MYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSG 1316 (1394)
T ss_pred             HHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcH-HHhH-HHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCC
Confidence            99999999999999999999999999999999999 7886 999999999999999999998775442            


Q ss_pred             --------------------------------CCHHHHHhhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040800          143 --------------------------------QDGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATE  187 (223)
Q Consensus       143 --------------------------------~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~  187 (223)
                                                      .+|+++|+. ++++.++ .|.|++++.+|++++ ++++++++++.
T Consensus      1317 ~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~-~~~~~~~-~w~~~~i~~~~~~~~-~~~~~~l~~~~ 1390 (1394)
T TIGR00956      1317 QTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEP-ISSKYSG-RWRNFGIFIAFIFFN-IIATVFFYWLA 1390 (1394)
T ss_pred             CCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHH-cCCcccc-cccchhhhhHHHHHH-HHHHHhhheEE
Confidence                                            288999998 7887776 899999999999999 77777777754

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.96  E-value=4.2e-29  Score=229.37  Aligned_cols=187  Identities=28%  Similarity=0.609  Sum_probs=173.5

Q ss_pred             CeeeeccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 040800            1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNY   80 (223)
Q Consensus         1 vf~rE~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~   80 (223)
                      +|.||+.+|+|+..+|++|++++++|+.++.+++|.++.|+++|++++..+|+.+++++++..++++++|+++++..||.
T Consensus       418 ~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~  497 (613)
T KOG0061|consen  418 IFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNL  497 (613)
T ss_pred             HHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCc--------ccCCCCHHHHHhhh
Q 040800           81 LLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLK--------FDNNQDGEQILRDT  152 (223)
Q Consensus        81 ~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~--------~~c~~~g~~~L~~~  152 (223)
                      ..|+.+++++..++++++|++++.+++|+ +|+ |++|+|+++|++|+++.|+|++..        ..|..+|.++++. 
T Consensus       498 ~~a~~~~~~~~~~f~l~~G~fi~~~~ip~-~~~-w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~-  574 (613)
T KOG0061|consen  498 SLATSLGPVLLLPFLLFGGFFINFDSIPK-YFR-WISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQ-  574 (613)
T ss_pred             hheeehHHHHHHHHHHHhhhhcCcccccH-HHH-HHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHh-
Confidence            99999999999999999999999999999 455 599999999999999999998522        2355689999998 


Q ss_pred             cCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 040800          153 WQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKP  191 (223)
Q Consensus       153 ~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~  191 (223)
                      .+++.++ .|.|+.++.++.++|+++++++++++.|.++
T Consensus       575 ~~~~~~~-~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~  612 (613)
T KOG0061|consen  575 LGFEDSS-FWLDLLVLLAFIVFFRVLGYLALRFRVKRKR  612 (613)
T ss_pred             cCCcccc-cchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence            7787775 9999999999999999999999999887653

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.96  E-value=2.1e-28  Score=231.97  Aligned_cols=188  Identities=28%  Similarity=0.503  Sum_probs=174.0

Q ss_pred             CeeeeccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 040800            1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNY   80 (223)
Q Consensus         1 vf~rE~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~   80 (223)
                      ||+|||...+|++|++.++.++.++|..++.+++|.+|.|++.|+.+++++|+.+++++++..+|..++..++++++++.
T Consensus       520 v~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~  599 (1391)
T KOG0065|consen  520 VFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTL  599 (1391)
T ss_pred             hHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCC------------C-----
Q 040800           81 LLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNN------------Q-----  143 (223)
Q Consensus        81 ~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~------------~-----  143 (223)
                      ..|+.++++......+++|+.+|.++||+ ||+ |++|++|+.|++|+++.|||.|..++|.            +     
T Consensus       600 ~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~-W~~-Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~  677 (1391)
T KOG0065|consen  600 SIANLIGGILLLVLFMYGGFVIPKKDMPP-WFR-WIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAA  677 (1391)
T ss_pred             HHHhhHhHHHHHHHHHHcceeeeccccch-HHH-HHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchh
Confidence            99999999999999999999999999998 455 5999999999999999999999999887            1     


Q ss_pred             ----------CHHHHHhhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 040800          144 ----------DGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKP  191 (223)
Q Consensus       144 ----------~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~  191 (223)
                                +|.++++..++++..+ .|++++++++|.++|.++..+++.+.+..+.
T Consensus       678 ~~~~~G~~~v~g~~~l~~~~~y~~~~-~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~  734 (1391)
T KOG0065|consen  678 TGATLGNDYVSGRDYLKVQYQYEYKW-YWRNFGILLGFTVFFNFVFLIALEYLKPLKK  734 (1391)
T ss_pred             hccccCceEEecccccccccccccce-eEeehhHHHHHHHHHHHHHHHHHHhcCcccc
Confidence                      5566666656666765 9999999999999999999999999775554

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.91  E-value=1.2e-24  Score=206.66  Aligned_cols=188  Identities=23%  Similarity=0.359  Sum_probs=169.4

Q ss_pred             CeeeeccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 040800            1 VFERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNY   80 (223)
Q Consensus         1 vf~rE~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~   80 (223)
                      +++||+.+|+||+.+|++|+++.|+|+.++++.+|.++.|+++|+..++.+++.+++..+++.++...+|+++.+++||.
T Consensus      1184 y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~ 1263 (1391)
T KOG0065|consen 1184 YEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNL 1263 (1391)
T ss_pred             heeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCC------------CCHHHH
Q 040800           81 LLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNN------------QDGEQI  148 (223)
Q Consensus        81 ~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~------------~~g~~~  148 (223)
                      +.|..+.+.++....+|||++.|+..||. ||.| ++|+||.+|.++++...+++|.+..|.            ++..++
T Consensus      1264 ~~Aav~~s~~~s~~~~F~G~l~p~~~iP~-fW~w-my~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~ 1341 (1391)
T KOG0065|consen 1264 QTAAVIASLFFSFWNLFSGFLQPRSLIPK-FWIW-MYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEF 1341 (1391)
T ss_pred             hHHHHHHHHHHHHHHHhcccccccccccc-eeee-eeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHH
Confidence            99999999999999999999999999999 7886 999999999999999999999887774            356688


Q ss_pred             HhhhcC----CccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 040800          149 LRDTWQ----LELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKP  191 (223)
Q Consensus       149 L~~~~~----~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~  191 (223)
                      ++.++|    +.++. .-..-++...+.+.+.+++.+.+++.++.++
T Consensus      1342 m~~~~~~~~Gy~~n~-~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1342 MEDFFGEGTGYLHNP-LATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred             HHHHhccCcceeccC-cceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence            888777    55553 3334446677888999999998888777654

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=99.67  E-value=3.2e-15  Score=120.36  Aligned_cols=151  Identities=12%  Similarity=0.103  Sum_probs=124.2

Q ss_pred             chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 040800           12 GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQ   91 (223)
Q Consensus        12 ~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~~~~~   91 (223)
                      +++.++++|.+...+..+++..+...+.+++.|+++.  +++.+++..++..+++.++|..++++.++...+  ......
T Consensus        58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~~  133 (208)
T TIGR03062        58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVLL  133 (208)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHHH
Confidence            6778899999999999999999999999998998753  567778888889999999999999999875443  344455


Q ss_pred             HHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcCCccCchhHHHHHHHHHH
Q 040800           92 GMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAILFGM  171 (223)
Q Consensus        92 ~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~  171 (223)
                      .++++++|.+.|.+.||+ +++ |+++++|.+|+.+++....++|                   +.+ ..+.++++|.++
T Consensus       134 ~~~~~~sG~~~P~~~~P~-~~~-~i~~~~P~t~~~~~~r~~~~~~-------------------~~~-~~~~~~~~L~~~  191 (208)
T TIGR03062       134 VLQLGSSGGTFPIELLPA-FFQ-AIHPFLPMTYSVNGLRQLISGG-------------------NDG-TLWQAVAVLLLI  191 (208)
T ss_pred             HHHHccCCCccchhhCHH-HHH-HhhhhCcHHHHHHHHHHHHhCC-------------------cHH-HHHHHHHHHHHH
Confidence            677788999999999999 455 4999999999999997666532                   111 378899999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 040800          172 VVVYRLVFLGIIKATEK  188 (223)
Q Consensus       172 ~v~~~~la~~~l~~~~~  188 (223)
                      .+++.+++...+|+++|
T Consensus       192 ~~v~~~la~~~~~~~~~  208 (208)
T TIGR03062       192 LVVFLALSLLSARRKRR  208 (208)
T ss_pred             HHHHHHHHHHHHhhhcC
Confidence            99999999887776553

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=99.58  E-value=4.6e-14  Score=115.57  Aligned_cols=159  Identities=13%  Similarity=0.126  Sum_probs=117.6

Q ss_pred             eeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040800            3 ERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVA   74 (223)
Q Consensus         3 ~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~   74 (223)
                      .+||++|.+        ++..|+++|.+...+..+++..++. +.+++.|++.... ....+....+....+.++|.+++
T Consensus        60 ~~er~~G~l~rl~~~P~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~  137 (232)
T TIGR00025        60 ARDRRYGALKRLGATPLPRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGG-ALTALTLGAVIIALGTALFAALG  137 (232)
T ss_pred             HHHHHhCHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCc-hHHHHHHHHHHHHHHHHHHHHHH
Confidence            478888888        6899999999988888877765555 4455678865432 33344455555566677777777


Q ss_pred             Hhcc---chHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhh
Q 040800           75 SLVP---NYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRD  151 (223)
Q Consensus        75 a~~~---~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~  151 (223)
                      .+.+   +.+.+..+.+.+..+..++||.+.|.+.||+ ++++ +++++|.+|+.+++.....++.              
T Consensus       138 ~~~~~~~~~~~~~~i~~~~~~p~~~lSG~~~P~~~mP~-~lq~-i~~~~P~t~~~~~~r~~~~~~~--------------  201 (232)
T TIGR00025       138 LVAGGTLQAEIVLAVANLVWFIFALLSAGLVPLNLIPT-WIKW-FVRVQPSSYATEALRQAATVSV--------------  201 (232)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHHHhheeeecccccH-HHHH-HHHhCcHHHHHHHHHHHHcCCC--------------
Confidence            7764   4444577888889999999999999999999 4555 9999999999999876543321              


Q ss_pred             hcCCccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040800          152 TWQLELGYSKWVDLAILFGMVVVYRLVFLGIIK  184 (223)
Q Consensus       152 ~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~  184 (223)
                          +.+ ..+.+++.+.++.+++..++...++
T Consensus       202 ----~~~-~~~~~~~~l~~~~~v~~~la~~~~~  229 (232)
T TIGR00025       202 ----DTF-GAVRDLVVVLAFWVALAALAAIRLR  229 (232)
T ss_pred             ----Chh-hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                112 2678888999999988888876554

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.58  E-value=8.1e-17  Score=128.51  Aligned_cols=129  Identities=27%  Similarity=0.429  Sum_probs=119.5

Q ss_pred             eeeeccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Q 040800            2 FERERLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYL   81 (223)
Q Consensus         2 f~rE~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~   81 (223)
                      +.||+.++.|++.+|+++|.+.+++..++..+++..+.+.+.|++.+  ++..+++..++...++.++|.+++.++++.+
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~  159 (210)
T PF01061_consen   82 LERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPSFR  159 (210)
T ss_pred             cccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhhhh
Confidence            67999999999999999999999999999999999999999999766  6778888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhh
Q 040800           82 LGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEF  134 (223)
Q Consensus        82 ~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~  134 (223)
                      .+..+.+.+..+++++||.+.|.+.+|+  |..|+.+++|++|+.|++..++|
T Consensus       160 ~~~~~~~~~~~~~~~~sg~~~p~~~lP~--~~~~i~~~~P~~~~~~~~r~~~f  210 (210)
T PF01061_consen  160 DASAISSLILLLLFFLSGVFFPLSSLPS--WLRWISYLNPLTYAVEALRAALF  210 (210)
T ss_pred             hhhhhhhhcccccccceeeecchHHChH--HHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999997  44459999999999999988764

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=99.55  E-value=1.9e-13  Score=113.46  Aligned_cols=161  Identities=15%  Similarity=0.130  Sum_probs=126.4

Q ss_pred             eeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040800            3 ERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVA   74 (223)
Q Consensus         3 ~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~   74 (223)
                      .|||++|.+        ++..+++||.+.+....+++.++...+.+ ..|..+ ..+......++++..+++.++|++++
T Consensus        83 ~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~-~~g~~~-~~~~l~~~~~~ll~~l~~~~lg~~~a  160 (253)
T TIGR01291        83 ARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTA-TLGYIE-WWSLIYILPVIALTGLAFASLSMLVA  160 (253)
T ss_pred             HHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhch-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467777776        78999999999998888888776655554 334433 24455555666778888889999999


Q ss_pred             HhccchHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcC
Q 040800           75 SLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQ  154 (223)
Q Consensus        75 a~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~  154 (223)
                      .+.++.+.+..+.+.+..|++++||.+.|.+.||+ ++++ +.+++|++|+.|++....+++                  
T Consensus       161 ~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~-~lq~-i~~~nPlt~~v~~~R~~~~g~------------------  220 (253)
T TIGR01291       161 ALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLND-VIQG-MTHFLPLAHSIDDIRPVMLGG------------------  220 (253)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChH-HHHH-HHHHCcHHHHHHHHHHHHhCC------------------
Confidence            99999999998899999999999999999999999 4555 999999999999986654321                  


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040800          155 LELGYSKWVDLAILFGMVVVYRLVFLGIIKATE  187 (223)
Q Consensus       155 ~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~  187 (223)
                       +.. +.+.+++++.++.+++..++...++++.
T Consensus       221 -~~~-~~~~~~~~l~~~~vv~~~la~~~fr~~~  251 (253)
T TIGR01291       221 -PGT-QVGLHLGALCLYAVVPFFISAALLRRRL  251 (253)
T ss_pred             -CcH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence             111 2567889999999999998887766643

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=99.53  E-value=2e-13  Score=111.93  Aligned_cols=147  Identities=16%  Similarity=0.062  Sum_probs=120.9

Q ss_pred             chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 040800           12 GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQ   91 (223)
Q Consensus        12 ~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~~~~~   91 (223)
                      ++..|+++|.+.+.+..+++..+...+.+++.+.+.  ..+....+..++...+..++|.+++...+|.+.++.+.+.+.
T Consensus        88 ~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~~~  165 (236)
T TIGR01247        88 SRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSMLM  165 (236)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            578999999999999999999999988888777653  344545556666777889999999999999999999999999


Q ss_pred             HHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcCCccCchhHHHHHHHHHH
Q 040800           92 GMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAILFGM  171 (223)
Q Consensus        92 ~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~  171 (223)
                      .+..++||.+.|.+.+|+ ++++ +.+++|.+|+.|++.....++.                  ... +.+.+++++.++
T Consensus       166 ~~l~~lsG~~~P~~~~P~-~~~~-i~~~~P~~~~~~~~r~~~~~~~------------------~~~-~~~~~~~~l~~~  224 (236)
T TIGR01247       166 LPMFFLSGAFYPITTMPA-WMQG-LAKINPLTYAVDGARYYLAGVS------------------PTF-PLEQDLLVLTLL  224 (236)
T ss_pred             HHHHHHHHhhcCHHhCHH-HHHH-HHHHCcHHHHHHHHHHHHhCCC------------------ccc-chHHHHHHHHHH
Confidence            999999999999999999 4555 9999999999999765333211                  112 267899999999


Q ss_pred             HHHHHHHHHH
Q 040800          172 VVVYRLVFLG  181 (223)
Q Consensus       172 ~v~~~~la~~  181 (223)
                      ++++..++..
T Consensus       225 ~~~~~~l~~~  234 (236)
T TIGR01247       225 AVIFVGIAAV  234 (236)
T ss_pred             HHHHHHHHHH
Confidence            9999988865

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK15066 inner membrane transport permease; Provisional

Probab=99.34  E-value=7.3e-11  Score=98.15  Aligned_cols=155  Identities=15%  Similarity=0.132  Sum_probs=117.2

Q ss_pred             cchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 040800           11 YGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGI   90 (223)
Q Consensus        11 Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~~~~   90 (223)
                      .++..+.+++++.......++..+...+.+...|.++.  .........++........|++++.+.++.+....+.+.+
T Consensus       101 ~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~~  178 (257)
T PRK15066        101 VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIPTFV  178 (257)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            37888999999998888777777776666665576532  2333333434434444455899998888888888889999


Q ss_pred             HHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcCCccCchhHHHHHHHHH
Q 040800           91 QGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAILFG  170 (223)
Q Consensus        91 ~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~  170 (223)
                      ..+++.+||.+.|.+.+|+  |.+|+.+++|++|..|++......                   .+.. +.|.+++++++
T Consensus       179 ~~pl~flSgi~~p~~~lP~--~l~~i~~~nPlt~~v~~~R~~~~g-------------------~~~~-~~~~~l~~l~~  236 (257)
T PRK15066        179 LTPLTYLGGVFYSISLLPP--FWQGVSKLNPIVYMVNAFRYGFLG-------------------ISDV-PLWLAFAVLLV  236 (257)
T ss_pred             HHHHHHHcchhccHHhChH--HHHHHHHHCcHHHHHHHHHHHHcC-------------------CCCc-cHHHHHHHHHH
Confidence            9999999999999999998  544599999999999999754432                   1111 26789999999


Q ss_pred             HHHHHHHHHHHHHHhhhhc
Q 040800          171 MVVVYRLVFLGIIKATEKL  189 (223)
Q Consensus       171 ~~v~~~~la~~~l~~~~~~  189 (223)
                      +.+++..++...+|++++-
T Consensus       237 ~~~v~~~la~~~~~r~~~~  255 (257)
T PRK15066        237 FIVVLYLLAWYLLERGRGL  255 (257)
T ss_pred             HHHHHHHHHHHHHHhhccc
Confidence            9999999998887766543

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=99.33  E-value=6.1e-11  Score=98.32  Aligned_cols=148  Identities=9%  Similarity=0.006  Sum_probs=112.5

Q ss_pred             chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 040800           12 GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQ   91 (223)
Q Consensus        12 ~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~~~~~   91 (223)
                      ++..+.++|++.+....+++..+...+.+. .|.+.+..++.......++..+...++|++++.+.++.+.+..+.+.+.
T Consensus       100 ~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~lgl~la~l~~~~~~~~~i~~~~~  178 (253)
T TIGR03861       100 PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGALGLALSNLIRQLENFAGVMNFVI  178 (253)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            688899999999998888887666655543 3665443444444555566778888999999999999888888888999


Q ss_pred             HHHHhhcccccCCCCC---cchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcCCccCchhHHHHHHH
Q 040800           92 GMMILGGGFFQLPNDI---PKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAIL  168 (223)
Q Consensus        92 ~~~~l~sG~~~~~~~~---p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL  168 (223)
                      .+++.+||.+.|.+.+   |+  |..|+.+++|++|..|++.....++                      . .+..++.+
T Consensus       179 ~~l~flSgi~~p~~~~~~~p~--~l~~i~~~nPl~~~i~~~R~~~~g~----------------------~-~~~~~~~~  233 (253)
T TIGR03861       179 FPMFFLSSALYPLWKMQEAST--WLYWICALNPFTHAVELVRFALYGQ----------------------L-NLPALGWT  233 (253)
T ss_pred             HHHHHHhhHhhhhhhcccccH--HHHHHHHhCcHHHHHHHHHHHHhCC----------------------c-chhHHHHH
Confidence            9999999999999777   66  4445999999999999997543211                      1 34566778


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 040800          169 FGMVVVYRLVFLGIIKA  185 (223)
Q Consensus       169 ~~~~v~~~~la~~~l~~  185 (223)
                      .++.+++..++...+|+
T Consensus       234 ~~~~~v~~~~~~~~fr~  250 (253)
T TIGR03861       234 LGATTLFTLLAFWGFDP  250 (253)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            88888888888775544

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>TIGR01248 drrC daunorubicin resistance protein C

Probab=99.33  E-value=7.7e-12  Score=96.07  Aligned_cols=124  Identities=14%  Similarity=0.029  Sum_probs=93.5

Q ss_pred             eeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHH---HHHHHHHHHHHHHHHHHH
Q 040800            3 ERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFF---YFVLLLFACMMLVESLMM   71 (223)
Q Consensus         3 ~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~---~~~~~~~l~~~~~~~lg~   71 (223)
                      .+||++|++        ++..++++|.+......+++..+...+.+. .|++... .+.   ....+..+..+....+|.
T Consensus        13 ~~dr~~G~~~~l~~tP~~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~-~~~~~~~~~~~~~l~~~~f~~l~~   90 (152)
T TIGR01248        13 TIDREIGLLSRLWVLPIHRASALLARIIAETIRAFIGTILILAIALA-LGFRFRN-GVAAALLFLLIPSIFGIAFAALVM   90 (152)
T ss_pred             HHHHHhHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367777777        789999999999999999999988888854 4887653 333   233333444556666666


Q ss_pred             HHHHhccchHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHH
Q 040800           72 IVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFK  131 (223)
Q Consensus        72 ~i~a~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~  131 (223)
                      .++...++.+ +....+.+..|..++||.+.|.+.||+  |..|+.+++|.+|+.|++..
T Consensus        91 ~~a~~~~~~~-~~~~~~~v~~pl~flsg~~~P~~~mP~--wlq~ia~~~Plt~~~~~~R~  147 (152)
T TIGR01248        91 AMALRKEGRF-AMEALELAQAAAAFLNPGATPIKLFPD--WAQPLIAHQPISPAIEACAD  147 (152)
T ss_pred             HHHHHcCCHH-HHHHHHHHHHHHHHHhhhhcCHHhCcH--HHHHHHhhCCccHHHHHHHH
Confidence            6655555544 444567788899999999999999999  65569999999999999864

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=99.26  E-value=2.8e-10  Score=94.40  Aligned_cols=163  Identities=18%  Similarity=0.248  Sum_probs=127.5

Q ss_pred             eeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-
Q 040800            4 RERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVA-   74 (223)
Q Consensus         4 rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~-   74 (223)
                      +|++.|..        +...+++++.+.......+...+...+..++.|.. ...++........+..+...++|.+++ 
T Consensus       113 ~~~~~g~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~  191 (286)
T COG0842         113 REREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLST  191 (286)
T ss_pred             hHHhhCcHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666666        34678888888888888788777777777777743 345666677777778888888888666 


Q ss_pred             HhccchHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcC
Q 040800           75 SLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQ  154 (223)
Q Consensus        75 a~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~  154 (223)
                      ...++.+.+..+...+..+..+++|.+.|.+.+|.  |..|+.++.|.+|+.|++......+.                 
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~--~~~~i~~~~P~t~~~~~~~~~~~~~~-----------------  252 (286)
T COG0842         192 FAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPA--WLQGISYINPLTYAIDALRYVYLGGW-----------------  252 (286)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHccccCchhhhHH--HHHHHHHHccHHHHHHHHHHHHhCCC-----------------
Confidence            35566777888888999999999999999999998  54459999999999999976655322                 


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040800          155 LELGYSKWVDLAILFGMVVVYRLVFLGIIKATEK  188 (223)
Q Consensus       155 ~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~  188 (223)
                       ..+ +.+.+++++.++.+++.+++...++++++
T Consensus       253 -~~~-~~~~~~~~l~~~~~v~~~~~~~~~~~~~~  284 (286)
T COG0842         253 -RND-GIWISLLILLLFAVVFLLLGLLLLRRRRK  284 (286)
T ss_pred             -chh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence             112 27889999999999999999998887765

>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A

Probab=98.71  E-value=2.5e-09  Score=90.68  Aligned_cols=150  Identities=21%  Similarity=0.278  Sum_probs=0.0

Q ss_pred             eeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccc---cccchhHHHHHHHHHHHHHHHHHHHHH
Q 040800            3 ERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPG---LHKGYQHFFYFVLLLFACMMLVESLMM   71 (223)
Q Consensus         3 ~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g---~~~~~~~~~~~~~~~~l~~~~~~~lg~   71 (223)
                      .+||++|..        ++..|+++|.+..+...++..++...+   +.|   ++.  .++...++..++..++..++|.
T Consensus       183 ~~ek~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~  257 (344)
T PF12698_consen  183 VEEKESGTRERLLSSGVSPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPF--GNFLLLLLLLLLFSLAFISFGF  257 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhHhhhhhhHhhhcccCCHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCcc--cchHHHHHHHHHHHHHHHHHHH
Confidence            467666665        678999999999999999988877764   444   443  3566677888889999999999


Q ss_pred             HHHHhccchHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhh
Q 040800           72 IVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRD  151 (223)
Q Consensus        72 ~i~a~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~  151 (223)
                      +++.++++...+..++.++..+...++|...|.+.+|+ +.++ +.++.|.+|..+++....++                
T Consensus       258 ~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-i~~~~P~~~~~~~~~~~~~~----------------  319 (344)
T PF12698_consen  258 LISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPS-FLQW-ISSFLPFYWFIQGLRNIIYG----------------  319 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHH-HHHH-HHHHhhHHHHHHHHHHHHHh----------------
Confidence            99999999999888888887777788888888888998 4565 88999999998887544321                


Q ss_pred             hcCCccCchhHHHHHHHHHHHHHHHHHHH
Q 040800          152 TWQLELGYSKWVDLAILFGMVVVYRLVFL  180 (223)
Q Consensus       152 ~~~~~~~~~~~~~~~iL~~~~v~~~~la~  180 (223)
                         . .. ..+.++++++++.+++.+++.
T Consensus       320 ---~-~~-~~~~~~~~l~~~~~v~~~l~~  343 (344)
T PF12698_consen  320 ---D-WS-EIWISLIILLLFAVVYLLLAI  343 (344)
T ss_dssp             -----------------------------
T ss_pred             ---c-HH-HHHHHHHHHHHHHHHHHHHHh
Confidence               1 11 266788888888888887764

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=98.66  E-value=9.5e-07  Score=72.83  Aligned_cols=152  Identities=14%  Similarity=0.115  Sum_probs=96.7

Q ss_pred             eeeeccCCCc--------chHHHHHHHHHHHhhHHHHHHh--hhhhhhhccccc---ccchhHHHHHHHHHHHHHHHHHH
Q 040800            2 FERERLNGHY--------GATAFVVGNSFSAVPYLIIVSL--VPGAIVYYLPGL---HKGYQHFFYFVLLLFACMMLVES   68 (223)
Q Consensus         2 f~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~--i~~~i~y~~~g~---~~~~~~~~~~~~~~~l~~~~~~~   68 (223)
                      +-|||++|+.        +++.++++|.++......+...  +...+.....|.   +.+.+.+...++..++...+..+
T Consensus        73 ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a  152 (240)
T TIGR03518        73 FAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYTA  152 (240)
T ss_pred             HHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHH
Confidence            3489999998        7899999999999866554332  111111112222   12455666566666777788999


Q ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHhhcccccCCCCC--cchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHH
Q 040800           69 LMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDI--PKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGE  146 (223)
Q Consensus        69 lg~~i~a~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~--p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~  146 (223)
                      +|.++|++.+++..|..++........  .|... ..++  |+  +..|+.++||.+|..+... ..             
T Consensus       153 ig~~iSsl~~~q~~a~~~~~~~~~~l~--~~~~~-l~~~~~~~--~~~~l~~~sp~~~~~~~~~-g~-------------  213 (240)
T TIGR03518       153 IGLFASSLTENQIVAFIIAVFLCFLFY--FGFDG-LASLLWGG--SAYTISELGLSYHYESISR-GV-------------  213 (240)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHH--HHHHH-Hhhhcchh--HHHHHHHcCHHHHHHHHHc-Cc-------------
Confidence            999999999988887665544432222  22211 2233  55  5556999999888755441 11             


Q ss_pred             HHHhhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 040800          147 QILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKA  185 (223)
Q Consensus       147 ~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~  185 (223)
                              +     .+.++...+.+++++..++...+++
T Consensus       214 --------i-----~~~~~v~~~~~~~~~l~l~~~~~~~  239 (240)
T TIGR03518       214 --------I-----DSRDVIYFLSITVLFLALTKLQLKS  239 (240)
T ss_pred             --------c-----cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence                    1     2467777888888888888766554

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.42  E-value=2.5e-05  Score=65.22  Aligned_cols=153  Identities=12%  Similarity=0.044  Sum_probs=113.4

Q ss_pred             chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 040800           12 GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQ   91 (223)
Q Consensus        12 ~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~~~~~   91 (223)
                      ++..+.+++++.++....+...+.....-+..+. + ..++........+..+.+.++|+++|.++--..--..+.+.+.
T Consensus       106 p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~-~-s~~~l~~~~~l~~l~l~~~g~~l~~a~l~v~fRD~~~i~~~v~  183 (263)
T COG1682         106 PPLILPVARTLSRLFNFLIHLIIILIFLIILGVE-P-SWHWLLLLPALLLLILFSVGLGLILASLGVRFRDLGQILGVVL  183 (263)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C-cHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHH
Confidence            7888999999999887777765555544444443 3 3566666667777788888999999988766555556678888


Q ss_pred             HHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcCCccCchhHHHHHHHHHH
Q 040800           92 GMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAILFGM  171 (223)
Q Consensus        92 ~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~  171 (223)
                      .+.+..+|.+.|.+.+|+ .+++ +..+||+.|-.|......+.|...                     .+.+.....++
T Consensus       184 ~~~f~~sPIi~~~~~~p~-~~~~-~~~~NP~~~iie~~R~~~~~~~~~---------------------~~~~~~~~~~~  240 (263)
T COG1682         184 QLLFFLSPIIYPVSNLPE-QLRE-LVLLNPLTHIIESFRAPLLGGDVP---------------------DLHLLVYILLL  240 (263)
T ss_pred             HHHHHhCceeeehhhccH-HHHH-HHHHCcHHHHHHHHHHHHhCCCcc---------------------cHHHHHHHHHH
Confidence            999999999999999998 4666 999999999999997766543211                     23455566666


Q ss_pred             HHHHHHHHHHHHHhhhhc
Q 040800          172 VVVYRLVFLGIIKATEKL  189 (223)
Q Consensus       172 ~v~~~~la~~~l~~~~~~  189 (223)
                      .++...++...+++.+|+
T Consensus       241 ~li~l~vg~~~~~~~~~~  258 (263)
T COG1682         241 TLILLFVGLLLFRKFRKR  258 (263)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            777777777777776653

>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.24  E-value=2.2e-06  Score=61.38  Aligned_cols=48  Identities=15%  Similarity=0.331  Sum_probs=43.7

Q ss_pred             CHHHHHhhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 040800          144 DGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKLKPV  192 (223)
Q Consensus       144 ~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~~  192 (223)
                      +|+++|+..+++..++ .|+|++|+++|+++|.++.++++.+.+..+..
T Consensus        32 ~G~~YL~~~y~y~~sh-~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~   79 (103)
T PF06422_consen   32 SGDDYLEESYGYSYSH-RWRNFGILIAFWIFFIVLTLLATEFIKFEKSG   79 (103)
T ss_pred             eHHHHHhhhccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence            8999999779999997 99999999999999999999999998776664

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane

>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional

Probab=98.13  E-value=0.00011  Score=61.36  Aligned_cols=110  Identities=14%  Similarity=0.023  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCC
Q 040800           57 LLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEG  136 (223)
Q Consensus        57 ~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~  136 (223)
                      ...++..+.+.++|+++|++..-..-...+.+.+..+.+..+|.+.|.+.+|+ .+++ +.+.||+.+.+|+.....+++
T Consensus       153 ~~~ll~~l~~~glglils~l~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~-~~~~-il~~NPl~~~ie~~R~~~~~~  230 (264)
T PRK15176        153 EGMVIAWLLGLSFGYFCDALSERFPLVYKAVPVMLRPMFLISAVFYTANELPY-SLLS-IFSWNPLLHANEIVREGMFEG  230 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcH-HHHH-HHHHCcHHHHHHHHHHHHhcC
Confidence            33444666677888888777544333445567788889999999999999998 4565 889999999999998777643


Q ss_pred             CcccCCCCHHHHHhhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 040800          137 LKFDNNQDGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATEKL  189 (223)
Q Consensus       137 ~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~  189 (223)
                      ..                  .   .+.+.....++.++..+++....++.+.+
T Consensus       231 ~~------------------~---~~~~~~~~~~~~~~~l~~G~~~~~~~~~~  262 (264)
T PRK15176        231 YH------------------S---LYLEPFYPLAFSATLFLAGLIFHLICDTE  262 (264)
T ss_pred             cC------------------c---cccChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            21                  0   12233566677777777787766665543

>PF12679 ABC2_membrane_2: ABC-2 family transporter protein

Probab=98.09  E-value=0.00015  Score=60.30  Aligned_cols=165  Identities=16%  Similarity=0.244  Sum_probs=94.3

Q ss_pred             eeeccCCCc--------chHHHHHHHHHHHhhHHH---HHHhhhhh---hhhcccccccchhHHHHHHHHHHHHHH---H
Q 040800            3 ERERLNGHY--------GATAFVVGNSFSAVPYLI---IVSLVPGA---IVYYLPGLHKGYQHFFYFVLLLFACMM---L   65 (223)
Q Consensus         3 ~rE~~~g~Y--------~~~~y~lak~l~~~p~~~---v~~~i~~~---i~y~~~g~~~~~~~~~~~~~~~~l~~~---~   65 (223)
                      -+|+++|.-        ++..++++|.++.....+   +...+-..   ......|.+.+...+...........+   +
T Consensus        91 a~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (277)
T PF12679_consen   91 AGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLAVLV  170 (277)
T ss_pred             HhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence            467887765        799999999999988743   22222111   111223444455555544444433333   4


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccc-CCCCCcchhhh--hhhhhhcHHHHHHHHHHHhhhCCCcccCC
Q 040800           66 VESLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQ-LPNDIPKIFWK--YPLYYIVFHKYAYQGMFKNEFEGLKFDNN  142 (223)
Q Consensus        66 ~~~lg~~i~a~~~~~~~a~~~~~~~~~~~~l~sG~~~-~~~~~p~~~~~--~wl~~isp~~y~~~~l~~~~~~~~~~~c~  142 (223)
                      ..++|+++|++.++...|..++..+............ ..+......+.  ..+.+++|..+. +.......++.     
T Consensus       171 ~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~-----  244 (277)
T PF12679_consen  171 FISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSPF-NLLIGSILGGG-----  244 (277)
T ss_pred             HHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHHH-HHHHHHhhccc-----
Confidence            6899999999999888887776665444433333222 11111110011  115677776543 22222221110     


Q ss_pred             CCHHHHHhhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040800          143 QDGEQILRDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKAT  186 (223)
Q Consensus       143 ~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~  186 (223)
                                   +.+...|.+++.++++.+++..+++..+++|
T Consensus       245 -------------~~~~~~~~~~~~~~~~~~v~l~la~~~F~rr  275 (277)
T PF12679_consen  245 -------------FVWLSTWPSLLILLAYTLVFLALAYYRFQRR  275 (277)
T ss_pred             -------------cchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                         0001378899999999999999999776664

>COG1511 Predicted membrane protein [Function unknown]

Probab=97.72  E-value=0.00086  Score=64.26  Aligned_cols=158  Identities=17%  Similarity=0.181  Sum_probs=110.8

Q ss_pred             ccCCCcchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q 040800            6 RLNGHYGATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGII   85 (223)
Q Consensus         6 ~~~g~Y~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~   85 (223)
                      ..++.+....|++++....+.....+..+-....+++.|+...  +-+.+++..+....++..+-..+.+++.  ..+..
T Consensus       610 ~~~~~~~~~~~~~~~~~~~i~~~~~q~~i~~~~~~~~l~~~~~--~~~~~~~~~i~~s~~f~~ii~~lv~~~g--~~g~~  685 (780)
T COG1511         610 LSDGILNGRVYFFGKNLVFITLGLIQSLIVTLGLVLLLGVEVK--SPLLLVLFAIFSSVAFMIIIYLLVSLFG--NPGKF  685 (780)
T ss_pred             ccccccchHHHHHHhhhHHHHHHHHHHHHHHhcCeEEEEeccC--chhHHHHHHHHHHHHHHHHHHHHHHHhC--cchHH
Confidence            4677788999999999999999999999888888888887642  2333444444444455555444445554  45566


Q ss_pred             HHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcCCccCchhHHHH
Q 040800           86 TGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDL  165 (223)
Q Consensus        86 ~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~  165 (223)
                      +..++.+.+...+|-..|....|. +++. +...-|++|++..+....                   .+.... ..|.++
T Consensus       686 i~ivllvlq~~~~~G~~pi~~~~~-~~~~-l~~~lp~ty~v~~~r~~~-------------------~~~~~~-~~~~~~  743 (780)
T COG1511         686 IAIVLLVLQIAGSGGTFPIQLSPS-FFQI-LHPALPLTYAVNGFREVI-------------------GGPIPS-NLWSGL  743 (780)
T ss_pred             HHHHHHHHHHhccccccchhccHH-HHHH-HHHhccHHHHHHHhHHhh-------------------ccCchH-HHhhhH
Confidence            667778889999999999999998 6777 999999999966663221                   112222 277888


Q ss_pred             HHHHHHHHHHHHHH-HHHHHhhhhc
Q 040800          166 AILFGMVVVYRLVF-LGIIKATEKL  189 (223)
Q Consensus       166 ~iL~~~~v~~~~la-~~~l~~~~~~  189 (223)
                      +++..+.+++++.. ++.+....+.
T Consensus       744 ~~~~~~~i~~~~~~~~~~~~~~~~~  768 (780)
T COG1511         744 LALIGFLILFIIGGLFLKLPLDKKL  768 (780)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888777743 4444444433

>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]

Probab=97.32  E-value=0.022  Score=47.52  Aligned_cols=172  Identities=15%  Similarity=0.208  Sum_probs=111.7

Q ss_pred             eeeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhh--h-hhhccccccc---chhHHHHHHHHHHHHHHHHH
Q 040800            2 FERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPG--A-IVYYLPGLHK---GYQHFFYFVLLLFACMMLVE   67 (223)
Q Consensus         2 f~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~--~-i~y~~~g~~~---~~~~~~~~~~~~~l~~~~~~   67 (223)
                      +-+|+++|+-        ++..-+++|.+.-+....+..++..  . ......|...   +......+....++......
T Consensus        83 is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  162 (278)
T COG1277          83 ISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYGLVLL  162 (278)
T ss_pred             hhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHH
Confidence            4578888876        7899999999999877776666555  2 2233334332   33355677778888889999


Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHhhcccccC------CCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCC-Cccc
Q 040800           68 SLMMIVASLVPNYLLGIITGSGIQGMMILGGGFFQL------PNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEG-LKFD  140 (223)
Q Consensus        68 ~lg~~i~a~~~~~~~a~~~~~~~~~~~~l~sG~~~~------~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~-~~~~  140 (223)
                      +++.+++...++...+..++..+.....+..+....      ....|.  -.. +...+|..+..+......... .+..
T Consensus       163 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~  239 (278)
T COG1277         163 SISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPT--LNT-LSLLLPLYLLAELAFTILLQSGFSDS  239 (278)
T ss_pred             HHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh--hHH-HhccCHHHHHHHHhhhhccccccccc
Confidence            999999999999888777666654444433333211      111111  122 778889888888765544311 0000


Q ss_pred             CCCCHHHHHhhhcCCccC-chhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040800          141 NNQDGEQILRDTWQLELG-YSKWVDLAILFGMVVVYRLVFLGIIKATE  187 (223)
Q Consensus       141 c~~~g~~~L~~~~~~~~~-~~~~~~~~iL~~~~v~~~~la~~~l~~~~  187 (223)
                                 ..+.... ...|.+..++.++.+++..++++.+++|+
T Consensus       240 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~r~d  276 (278)
T COG1277         240 -----------ILTLNESLLLAWFNILILIIYILIFLSIAYLIFKRRD  276 (278)
T ss_pred             -----------cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence                       0111111 13788999999999999999999887764

>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.24  E-value=0.00067  Score=44.07  Aligned_cols=46  Identities=20%  Similarity=0.388  Sum_probs=40.0

Q ss_pred             CHHHHHhhhcCCccCc-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 040800          144 DGEQILRDTWQLELGY-SKWVDLAILFGMVVVYRLVFLGIIKATEKLK  190 (223)
Q Consensus       144 ~g~~~L~~~~~~~~~~-~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~  190 (223)
                      -|+++|+. .|+..+. +.|.++++|++++++|.++..++|.+.+...
T Consensus        12 lG~~vL~~-rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~~   58 (65)
T PF08370_consen   12 LGVAVLKS-RGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNPLG   58 (65)
T ss_pred             HHHHHHHH-cCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence            58999999 7776653 6999999999999999999999999987643

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].

>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised

Probab=97.21  E-value=0.0095  Score=52.47  Aligned_cols=137  Identities=15%  Similarity=0.137  Sum_probs=92.5

Q ss_pred             chHHHHHHHHHHHhhHHHHHHhhhhhhhhccccccc--ch--hHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 040800           12 GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHK--GY--QHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITG   87 (223)
Q Consensus        12 ~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~--~~--~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~   87 (223)
                      ++..+++-|.+......++.++.++.+. ...+++.  ..  +.|..+|....+...+.-...-.+.++.+.+-.  .+.
T Consensus       240 ~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m~a~g~~~e~~~~~i~~~~~--~~~  316 (382)
T PF12051_consen  240 KPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYMSAVGLANENVISIIGPPFM--PFW  316 (382)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHH
Confidence            8889999999999999999999988888 4444432  33  458888877766655543333333344433332  223


Q ss_pred             HHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcCCccCchhHHHHHH
Q 040800           88 SGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAI  167 (223)
Q Consensus        88 ~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~i  167 (223)
                      .+..++..+-+ .+.|.+-.|. +++| .+=. |++.++|++....|++.                   .. ....++++
T Consensus       317 ll~wvi~nv~~-~~~P~el~p~-fyr~-gya~-P~~n~~~~~r~I~fd~~-------------------~~-~lg~n~gi  372 (382)
T PF12051_consen  317 LLFWVILNVSS-TFYPLELSPG-FYRY-GYAM-PMHNIYEGLRVIFFDTC-------------------KG-QLGRNYGI  372 (382)
T ss_pred             HHHHHHHhccc-ccCChhhCcc-HHHH-hhhh-hHHHHHHHHHHheeCCC-------------------cc-cccchHHH
Confidence            33344455555 5679999998 6775 5555 99999999987755422                   11 27789999


Q ss_pred             HHHHHHHH
Q 040800          168 LFGMVVVY  175 (223)
Q Consensus       168 L~~~~v~~  175 (223)
                      |++|.++-
T Consensus       373 l~aw~~v~  380 (382)
T PF12051_consen  373 LFAWIVVN  380 (382)
T ss_pred             HHHHHHHH
Confidence            99998764

It is found in bacterial and eukaryotic proteins.

>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []

Probab=96.47  E-value=0.014  Score=47.39  Aligned_cols=91  Identities=16%  Similarity=0.128  Sum_probs=67.0

Q ss_pred             eeeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040800            2 FERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIV   73 (223)
Q Consensus         2 f~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i   73 (223)
                      |.+|+++|..        ++..++++|.++......+...+...+...+.|.+.  .+...+...+.+......++|.+.
T Consensus        68 f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~--~~~~~~~~~l~lgt~gl~~igtl~  145 (215)
T PF03379_consen   68 FAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPI--SSWPLLLLSLLLGTLGLAAIGTLL  145 (215)
T ss_pred             HHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHhHHHHHHHHHH
Confidence            6789999985        567899999999998888777777777777777753  456666777777778888888888


Q ss_pred             HHhccchHHHHHHHHHHHHHH
Q 040800           74 ASLVPNYLLGIITGSGIQGMM   94 (223)
Q Consensus        74 ~a~~~~~~~a~~~~~~~~~~~   94 (223)
                      +++.-+......+.++...|.
T Consensus       146 aal~~~~r~~~~Ll~lL~lPl  166 (215)
T PF03379_consen  146 AALAAGARGREILLPLLLLPL  166 (215)
T ss_pred             HHHHHhccccCHHHHHHHHHH
Confidence            888665555445555554443

These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane

>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=96.19  E-value=0.12  Score=42.38  Aligned_cols=163  Identities=10%  Similarity=0.007  Sum_probs=91.2

Q ss_pred             eeeccCCCc-----chHHHHHHHHHHHhhHHHHHHh---hhhhhhhccccc----ccchhHHHHHHHHHHHHHHHHHHHH
Q 040800            3 ERERLNGHY-----GATAFVVGNSFSAVPYLIIVSL---VPGAIVYYLPGL----HKGYQHFFYFVLLLFACMMLVESLM   70 (223)
Q Consensus         3 ~rE~~~g~Y-----~~~~y~lak~l~~~p~~~v~~~---i~~~i~y~~~g~----~~~~~~~~~~~~~~~l~~~~~~~lg   70 (223)
                      .+|.++|..     +|..|...+.-++.+......+   +-.+..+.+.+-    -.+......+...+.+....--.+-
T Consensus        85 ~~eV~~G~l~~~LLrPld~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~l~~~~l~~~~l~la~~~~~~F~i~  164 (268)
T COG4587          85 EKEVREGELSPRLLRPLDYLFHELAAHLGERASRGLPFLLVLLLIFALLYGAILQFLSPWTLYLFVLALALLFLLRFLIQ  164 (268)
T ss_pred             HHHHHcCeecHHhcCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666654     5667777776666655444422   222222332221    1233343333333333322222222


Q ss_pred             HHHHHh-ccchHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHH
Q 040800           71 MIVASL-VPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQIL  149 (223)
Q Consensus        71 ~~i~a~-~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L  149 (223)
                      ..+++. +.+ +-|+.+.-.....-.+.||.+.|.+..|+ +.+. +--..|+.|....=....               +
T Consensus       165 f~~~~~aFwt-~~as~l~~~~~~l~~f~sG~l~PL~~fP~-~v~~-il~ftPFpy~~y~P~~ll---------------v  226 (268)
T COG4587         165 FTFGLFAFWT-ERASSLGKFWWLLYAFLSGSLAPLAFFPD-WVRA-ILAFTPFPYLLYTPVMLL---------------V  226 (268)
T ss_pred             HHHHHHHhhc-cchhhHHHHHHHHHHHhccccchHHhChH-HHHH-HHHhCCchhhhccHHHHH---------------h
Confidence            233333 344 44566677777888999999999999999 3444 666667777644211111               1


Q ss_pred             hhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040800          150 RDTWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATE  187 (223)
Q Consensus       150 ~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~  187 (223)
                      ..   .+.+ ..++++++.+++..++.++.-...|+-.
T Consensus       227 Gk---~s~~-~il~al~v~~~Wl~im~~l~~~lWrrgl  260 (268)
T COG4587         227 GK---YSGA-QILKALLVQIGWLLIMWLLSRWLWRRGL  260 (268)
T ss_pred             cc---ccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11   2233 3889999999999999999887776644

>PF06182 ABC2_membrane_6: ABC-2 family transporter protein; InterPro: IPR010390 This family consists of a number of hypothetical bacterial proteins of unknown function

Probab=96.19  E-value=0.39  Score=38.99  Aligned_cols=151  Identities=13%  Similarity=0.043  Sum_probs=88.6

Q ss_pred             chHHHHHHHHHHHh-hHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 040800           12 GATAFVVGNSFSAV-PYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGI   90 (223)
Q Consensus        12 ~~~~y~lak~l~~~-p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~~~~   90 (223)
                      +...+.+++-+..- ...++...+.........+.+.+..++..+.+.+.+..+...++...+++++=-......+.   
T Consensus        72 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~i~~~~~~~~~~~~~l~~g~li~~~i~~~~~~laFw~~~~~~~~---  148 (229)
T PF06182_consen   72 NYLFYLLFRNLGPSSLGFLIVGIILLIYALIQLGIPWSPLNILLFILSLLLGFLINFSIFFIIGLLAFWFTESWGLS---  148 (229)
T ss_pred             CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH---
Confidence            45556666555543 33333343333333434567677778887777777777777777777766532222222222   


Q ss_pred             HHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhhhcCCccCchhHHHHHHHHH
Q 040800           91 QGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAILFG  170 (223)
Q Consensus        91 ~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~  170 (223)
                      .....+++|...|.+-.|+ +.+..+.++.|+.+....=.....                     +..+ ....++.-.+
T Consensus       149 ~i~~~l~sg~~~Pl~~fp~-~~~~il~~~lPf~~i~~~P~~~ll---------------------g~~~-~~~~~~~q~~  205 (229)
T PF06182_consen  149 YIFYSLLSGAIYPLSIFPG-WIQFILTFILPFAYISYVPARILL---------------------GKIS-PLFILLIQAI  205 (229)
T ss_pred             HHHHHHHHHHHccHHHhHH-HHHHHHHHHhhHHHHHHHHHHHHc---------------------CCCc-HHHHHHHHHH
Confidence            3344559999999999999 566656666899886443222111                     1111 2344444467


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 040800          171 MVVVYRLVFLGIIKATEK  188 (223)
Q Consensus       171 ~~v~~~~la~~~l~~~~~  188 (223)
                      +.+++..++.+..|+-.|
T Consensus       206 ~~~v~~~l~~~~w~~glr  223 (229)
T PF06182_consen  206 WILVLFLLSRLLWRKGLR  223 (229)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777777777776666443

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=95.98  E-value=0.39  Score=51.09  Aligned_cols=163  Identities=10%  Similarity=0.063  Sum_probs=94.6

Q ss_pred             chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 040800           12 GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSGIQ   91 (223)
Q Consensus        12 ~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~~~~~   91 (223)
                      +.+.|++|+.+..+...++.+++.+++.... .+ ....+++..++.++++.++..+++.++|+++.+...|..+++++.
T Consensus       692 ~~~~~w~sWfi~~~~~~~i~~~l~~~il~~~-~~-~~~s~~~~lfl~~~~y~~s~I~~~fliS~fFska~~A~~~~~li~  769 (2272)
T TIGR01257       692 SNAVIWCTWFLDSFSIMSMSIFLLTIFIMHG-RI-LHYSDPFILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIY  769 (2272)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ce-eecCChHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            7789999999998877777655544443221 11 123455667777888888999999999999999999998888876


Q ss_pred             HHHHhhcccc-cCCCCCcchhhhhhhhhhcHHHHHHHHHHHh--hhCCCcccCCCCHHHHHhhhcCCccCchhHHHHHHH
Q 040800           92 GMMILGGGFF-QLPNDIPKIFWKYPLYYIVFHKYAYQGMFKN--EFEGLKFDNNQDGEQILRDTWQLELGYSKWVDLAIL  168 (223)
Q Consensus        92 ~~~~l~sG~~-~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~--~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL  168 (223)
                      ....+--.+. .-.+.++. ..++.++-+||...++..-...  |-.+.....+.    +.+. -..+.+.+....+++|
T Consensus       770 f~~~lp~~~~~~~~~~~~~-~~~~~~sL~sp~af~~g~~~i~~~e~~~~G~~w~n----~~~~-~~~~d~~s~~~~~~ml  843 (2272)
T TIGR01257       770 FTLYLPHILCFAWQDRMTA-DLKTAVSLLSPVAFGFGTEYLVRFEEQGLGLQWSN----IGNS-PLEGDEFSFLLSMKMM  843 (2272)
T ss_pred             HHHHHHHHHHhhcccccCH-HHHHHHHhcCHHHHHHHHHHHHHHhhhCCCccccc----cccc-ccCCCCccHHHHHHHH
Confidence            5543322211 12344554 2344466777766665433332  22222221110    0000 0011111244556667


Q ss_pred             HHHHHHHHHHHHHH
Q 040800          169 FGMVVVYRLVFLGI  182 (223)
Q Consensus       169 ~~~~v~~~~la~~~  182 (223)
                      ++=++++.+++++.
T Consensus       844 ~~d~~lY~lL~~Yl  857 (2272)
T TIGR01257       844 LLDAALYGLLAWYL  857 (2272)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777777654

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.54  E-value=1.1  Score=36.58  Aligned_cols=143  Identities=14%  Similarity=0.171  Sum_probs=86.2

Q ss_pred             eccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhc---ccccccch--hHHHHHHHHHHHHHHHHHHHHH
Q 040800            5 ERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYY---LPGLHKGY--QHFFYFVLLLFACMMLVESLMM   71 (223)
Q Consensus         5 E~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~---~~g~~~~~--~~~~~~~~~~~l~~~~~~~lg~   71 (223)
                      |+++|..        +++..|++|.+.-+....+.+++.....+.   ..|...+.  ..++......++.+.-..++=.
T Consensus        78 Ehk~n~W~~ll~lPv~r~~~YlsK~~~vf~L~~l~~li~~~~i~~~gv~~g~~~s~~~~~~~~~~~~gll~alpl~~lQ~  157 (239)
T COG4200          78 EHKSNMWKHLLLLPVARWKVYLSKVFWVFILVALTSLILFISIWTVGVLYGGVKSFELAAAFTLLILGLLLALPLVALQF  157 (239)
T ss_pred             HhcCCCchhhheeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666665        689999999999988877776665555554   23443332  2333444455666666667777


Q ss_pred             HHHHhccchHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHHHhhhCCCcccCCCCHHHHHhh
Q 040800           72 IVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMFKNEFEGLKFDNNQDGEQILRD  151 (223)
Q Consensus        72 ~i~a~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~  151 (223)
                      .++.-++|...|..++...  |..+.    ...++.|.  |   +-|-+|..-.        +                 
T Consensus       158 wLsm~fknf~~al~igI~l--~a~fv----a~~~s~~~--~---~PW~~pi~~~--------~-----------------  201 (239)
T COG4200         158 WLSMRFKNFAVALVIGIFL--PALFV----ASAESLPV--W---LPWASPILPM--------F-----------------  201 (239)
T ss_pred             HHHHHHHhhhHhHHHHHhH--HHHHH----HhccccCc--c---ccchhhhhhh--------h-----------------
Confidence            7888888877777666555  32222    23344565  3   4455555411        1                 


Q ss_pred             hcCCccCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040800          152 TWQLELGYSKWVDLAILFGMVVVYRLVFLGIIKATE  187 (223)
Q Consensus       152 ~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~  187 (223)
                          +.+.+.-.++..+.+..+++...+++.+++++
T Consensus       202 ----~~~l~v~~~i~~~~v~~ll~~l~s~l~~~r~~  233 (239)
T COG4200         202 ----SGSLSVETGILFLGVLALLFLLSSFLFFKRKK  233 (239)
T ss_pred             ----ccccccchhHHHHHHHHHHHHHHHHHHHhhhc
Confidence                11111334666677777778888887776654

>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family

Probab=95.39  E-value=1.3  Score=36.55  Aligned_cols=77  Identities=13%  Similarity=0.109  Sum_probs=52.4

Q ss_pred             eeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhc----cc-ccccchhHHHHHHHHHHHHHHHHHHH
Q 040800            3 ERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYY----LP-GLHKGYQHFFYFVLLLFACMMLVESL   69 (223)
Q Consensus         3 ~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~----~~-g~~~~~~~~~~~~~~~~l~~~~~~~l   69 (223)
                      .+|+++|.|        ++..+++||.+.-....++...+...+...    +. +-+.+...+....+.+++.++....+
T Consensus        69 ~~E~~~~~~k~ll~~p~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~~sl~~~~l  148 (248)
T TIGR03733        69 EQEESAGNFKNLLSTTKSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLYII  148 (248)
T ss_pred             HHHHHhChHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            578888887        688999999998877776655543222221    11 12233455666666778888888899


Q ss_pred             HHHHHHhccc
Q 040800           70 MMIVASLVPN   79 (223)
Q Consensus        70 g~~i~a~~~~   79 (223)
                      +++++....+
T Consensus       149 ~l~ls~~~g~  158 (248)
T TIGR03733       149 HLFVSFAFGM  158 (248)
T ss_pred             HHHHHHHhCC
Confidence            9999888765

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.

>TIGR01190 ccmB heme exporter protein CcmB

Probab=94.95  E-value=0.13  Score=41.62  Aligned_cols=88  Identities=15%  Similarity=0.035  Sum_probs=63.2

Q ss_pred             eeeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040800            2 FERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIV   73 (223)
Q Consensus         2 f~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i   73 (223)
                      |.+|++||..        +....+++|.++......+.-.+...+.-.+.|++.  .....+.+.+.+.......+|-+.
T Consensus        65 F~~d~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~--~~~~~l~l~LllGt~~Ls~igtl~  142 (211)
T TIGR01190        65 FRDDFEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDV--PAWGALALTLLLGTPALSFLGAIG  142 (211)
T ss_pred             HHHHHhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999976        688999999999998877777776666666777753  334566677777778888888888


Q ss_pred             HHhccchHHHHHHHHHHH
Q 040800           74 ASLVPNYLLGIITGSGIQ   91 (223)
Q Consensus        74 ~a~~~~~~~a~~~~~~~~   91 (223)
                      +++.-+......+.+++.
T Consensus       143 aALt~g~r~~~~Ll~lL~  160 (211)
T TIGR01190       143 AALTVGLKRGGLLLSLLV  160 (211)
T ss_pred             HHHHHhccCCchHHHHHH
Confidence            887655443333444443

This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.

>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=94.32  E-value=1.8  Score=38.62  Aligned_cols=77  Identities=17%  Similarity=0.109  Sum_probs=52.0

Q ss_pred             chHHHHHHHHHHHhhHHHHHHhhhhhhhh---------cccc--cccchhHHHHHHHHHH-HHHHHHHHHHHHHHHhccc
Q 040800           12 GATAFVVGNSFSAVPYLIIVSLVPGAIVY---------YLPG--LHKGYQHFFYFVLLLF-ACMMLVESLMMIVASLVPN   79 (223)
Q Consensus        12 ~~~~y~lak~l~~~p~~~v~~~i~~~i~y---------~~~g--~~~~~~~~~~~~~~~~-l~~~~~~~lg~~i~a~~~~   79 (223)
                      |+..++.||+++-..+.+.+..+.....+         ...+  +...+..+..+..... ...+...++..++++.+.+
T Consensus       228 Sr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~l~a~l~~~a~~  307 (407)
T COG1668         228 SRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAGTGLALLPAYLLLFALSLFLLGLLLYAALAAFLGAMAGS  307 (407)
T ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            78999999999999999998776666662         1111  2223333333433333 3334455588899999999


Q ss_pred             hHHHHHHHH
Q 040800           80 YLLGIITGS   88 (223)
Q Consensus        80 ~~~a~~~~~   88 (223)
                      .+.|+....
T Consensus       308 ~k~aq~~~~  316 (407)
T COG1668         308 IKEAQTLIS  316 (407)
T ss_pred             HHHHHHHhh
Confidence            988888777

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=93.84  E-value=1.8  Score=46.35  Aligned_cols=77  Identities=13%  Similarity=0.016  Sum_probs=60.0

Q ss_pred             chHHHHHHHHHHHhhHHHHHHhhhhhhhhccc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 040800           12 GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLP--GLHKGYQHFFYFVLLLFACMMLVESLMMIVASLVPNYLLGIITGSG   89 (223)
Q Consensus        12 ~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~--g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i~a~~~~~~~a~~~~~~   89 (223)
                      ++.+|.++..+.++...++..+++.++.+.+-  ++ .+..++...++++++++.+...+..++|.++++...|......
T Consensus      1719 ~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~-~~~~~l~~~~lll~lyG~a~ip~tYl~SflF~~~~~A~~~~~~ 1797 (2272)
T TIGR01257      1719 SPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAY-TSPENLPALVALLMLYGWAVIPMMYPASFLFDVPSTAYVALSC 1797 (2272)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhh-cCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence            78999999999999988888777766655432  22 2335666777788999999999999999999998887655443

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PF12730 ABC2_membrane_4: ABC-2 family transporter protein

Probab=92.53  E-value=0.81  Score=35.77  Aligned_cols=85  Identities=21%  Similarity=0.382  Sum_probs=50.4

Q ss_pred             eeeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhh---ccccc-ccchhH----HHHHHHHHHHHHHH
Q 040800            2 FERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVY---YLPGL-HKGYQH----FFYFVLLLFACMML   65 (223)
Q Consensus         2 f~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y---~~~g~-~~~~~~----~~~~~~~~~l~~~~   65 (223)
                      +.+|+++|++        ++..++.+|.+......++..++...+.+   .+.+. +.+...    ...+.+...+....
T Consensus        70 ~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (232)
T PF12730_consen   70 FSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFLLLSLF  149 (232)
T ss_pred             HHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHHHHHH
Confidence            4578888876        78999999999998877666655333322   22221 122222    22333344444444


Q ss_pred             HHHHHHHHHHhccchHHHHHHH
Q 040800           66 VESLMMIVASLVPNYLLGIITG   87 (223)
Q Consensus        66 ~~~lg~~i~a~~~~~~~a~~~~   87 (223)
                      ...+ .+++.+.+|...+..+.
T Consensus       150 ~~~~-~~i~~~~~~~~~~i~~~  170 (232)
T PF12730_consen  150 ISLL-LFISSLFRNSIVAIIIS  170 (232)
T ss_pred             HHHH-HHHHHHHhhHHHHHHHH
Confidence            5555 77788888866554433

>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family

Probab=92.34  E-value=5.4  Score=32.73  Aligned_cols=114  Identities=12%  Similarity=0.166  Sum_probs=59.6

Q ss_pred             eeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhc---ccccc-cchhHHHHHHHHHHHHHHHHHHHH
Q 040800            3 ERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYY---LPGLH-KGYQHFFYFVLLLFACMMLVESLM   70 (223)
Q Consensus         3 ~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~---~~g~~-~~~~~~~~~~~~~~l~~~~~~~lg   70 (223)
                      .+|+++|.|        +....++||.+.-....++..+++....+.   +.+.. .+........+..++.++....+-
T Consensus        64 ~~E~~~~~~k~lls~pvs~~~~~~aK~l~~~~~~~~s~~i~~i~~~~~g~l~~~~~~~~~~~~~~~l~~~i~sl~~i~l~  143 (241)
T TIGR03732        64 KKEKKASNYRAILSLPVDLKKVWIAKILVIAIYLLISCIILFIGLVLIGFVIPPSNISIGQALLASLLIWLTSLWQIPLC  143 (241)
T ss_pred             HHHHhccCcceEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            578877776        678999999998877766665554432222   22322 122333444445555555556666


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHHHhhcccccCCCCCcchhhhhhhhhhcHHHHHHHHHH
Q 040800           71 MIVASLVPNYLLGIITGSGIQGMMILGGGFFQLPNDIPKIFWKYPLYYIVFHKYAYQGMF  130 (223)
Q Consensus        71 ~~i~a~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~~p~~~~~~wl~~isp~~y~~~~l~  130 (223)
                      ++++.-. +    +.....+.....++.|.+...+  +  .|     ++.|..|..+.+.
T Consensus       144 l~ls~~~-g----~~~si~ig~~~~li~g~~~~~~--~--~w-----~~~P~s~~~rl~~  189 (241)
T TIGR03732       144 LFLARKF-G----MFVSILVNLVLGLIFGIVLATK--S--FW-----WLFPYSWPSRLMC  189 (241)
T ss_pred             HHHHHHH-H----HHHHHHHHHHHHHHHHHHHHcc--C--Ce-----EEechHHHHHHHh
Confidence            6665333 2    2211112222233345543221  2  12     4568888877774

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.

>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]

Probab=91.01  E-value=0.9  Score=36.44  Aligned_cols=88  Identities=15%  Similarity=0.091  Sum_probs=63.6

Q ss_pred             eeeeccCCCc--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040800            2 FERERLNGHY--------GATAFVVGNSFSAVPYLIIVSLVPGAIVYYLPGLHKGYQHFFYFVLLLFACMMLVESLMMIV   73 (223)
Q Consensus         2 f~rE~~~g~Y--------~~~~y~lak~l~~~p~~~v~~~i~~~i~y~~~g~~~~~~~~~~~~~~~~l~~~~~~~lg~~i   73 (223)
                      |++|++||..        ....-+++|++++-..+..--++..-+.+.+.+++  ...+....+.+++.......+|-.-
T Consensus        71 F~~d~edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll~~~--~~~~~~~~ltLllGtp~ls~~ga~g  148 (221)
T COG2386          71 FRDDYEDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLLNMD--VGALGALALTLLLGTPALSFLGAVG  148 (221)
T ss_pred             HHHhhhcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCC--HhHHHHHHHHHHhcchHHHHHHHHH
Confidence            7889999987        46678899999999888887778888888888875  4566666767777766666777777


Q ss_pred             HHhccchHHHHHHHHHHH
Q 040800           74 ASLVPNYLLGIITGSGIQ   91 (223)
Q Consensus        74 ~a~~~~~~~a~~~~~~~~   91 (223)
                      +++.-+....-.+.+++.
T Consensus       149 aALtv~lrrgglLl~vlv  166 (221)
T COG2386         149 AALTVGLRRGGLLLSVLV  166 (221)
T ss_pred             HHHHhcCccCCchhhHHH
Confidence            666555444444444443

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=86.20  E-value=1.7  Score=31.97  Aligned_cols=27  Identities=11%  Similarity=0.173  Sum_probs=14.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040800          161 KWVDLAILFGMVVVYRLVFLGIIKATE  187 (223)
Q Consensus       161 ~~~~~~iL~~~~v~~~~la~~~l~~~~  187 (223)
                      .+..++++++.+.+..+++|++.|+++
T Consensus        67 ~~Ii~gv~aGvIg~Illi~y~irR~~K   93 (122)
T PF01102_consen   67 IGIIFGVMAGVIGIILLISYCIRRLRK   93 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             eehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            556666666666555555555433333

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00