Citrus Sinensis ID: 040804

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
MHGLTYLSPTPHDNTLVYLPHLFAKSPLFHFQKQTNFTVTIPSCRFSYGDEFGVLLVSPQPFRNFKKKRRSNFSTLLRASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEASASSQGKPKSLWEELAEVGEEFVEFLEKELNITDPETETNEEPRQSNPFSSSATENTESRMRNEAGKGSSIEESIDDIEATLAKLKKELGL
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccEEccccccccHHHHHHHHHHHHHHHccccccccccHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccEEEEEHHHHHHHccccEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcc
cccEEEEcccccccccccccccccccccEEEEEEEccccccccccEccccccccccccccccccccccccccEEEEEEHHccccHHHHccccccccHHHHHHHHHHHHHHHccccccccccHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccEEEEEEEHHHHHcccEEEEEEcccccccccccccccccccccccccccccEccccccccHHccHHHHHHHHHHHHHHccc
mhgltylsptphdntlvylphlfaksplfhfqkqtnftvtipscrfsygdefgvllvspqpfrnfkkkRRSNFSTLLrasrrespyevlgvapsatADEIKRAYRKLALKyhpdvnkeITSVFQIFGIQPNAEEKFMRIKHAYNTLLnsesrrkydsgnrtsdfsystgpsqnaqdeefygfgnflRDVQITIEDFFKDLQEEFQNWeasassqgkpkSLWEELAEVGEEFVEFLEKElnitdpetetneeprqsnpfsssatentesrmrneagkgssieESIDDIEATLAKLKKELGL
mhgltylsptphdNTLVYLPHLFAKSPLFHFQKQTNFTVTIPSCRFSYGDEFGVLLVspqpfrnfkkkrrsnfstllrasrrespyevlgvapsatadEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNtllnsesrrkydsgnRTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWeasassqgkpkSLWEELAEVGEEFVEFLEKELNitdpetetneeprqsnpfsssatentesrmrneagkgssieesiddIEATLAKLKKELGL
MHGLTYLSPTPHDNTLVYLPHLFAKSPLFHFQKQTNFTVTIPSCRFSYGDEFGVLLVSPQPFRNFKKKRRSNFSTLLRASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEASASSQGKPKSlweelaevgeefveflekelNITDPETETNEEPRQSNPFSSSATENTESRMRNEAGKGSSIEESIDDIEATLAKLKKELGL
***********HDNTLVYLPHLFAKSPLFHFQKQTNFTVTIPSCRFSYGDEFGVLLVSPQPFRN**********************EVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLL******************************EFYGFGNFLRDVQITIEDFFKDLQEEFQNW*************WEELAEVGEEFVEFLE****************************************************************
********PTPHDNTLVY***************************************************************RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSV********NAEEKFMRIKHAYNTLLNSESRRKYDSG********************FYGFGNFLRDVQITIEDF**************************ELAEVGEEFVEFLEKELNITDPETETNE************************************IEATLAKLKKELG*
MHGLTYLSPTPHDNTLVYLPHLFAKSPLFHFQKQTNFTVTIPSCRFSYGDEFGVLLVSPQPFRNFKKKRRSNFSTLLRASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRR*******************NAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQN*************LWEELAEVGEEFVEFLEKELNITDP***********************************IEESIDDIEATLAKLKKELGL
**GLTYLSPTPHDNTLVYLPHLFAKSPLFHFQKQTNFTVTIPSCRFSYGDEFGVLLVSPQPF****KKRRSNFSTLLRASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQE**************PKSLWEELAEVGEEFVEFLEKELNITDPETE**E*******************************ESIDDIEATLAKLKK*L**
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHGLTYLSPTPHDNTLVYLPHLFAKSPLFHFQKQTNFTVTIPSCRFSYGDEFGVLLVSPQPFRNFKKKRRSNFSTLLRASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEASASSQGKPKSLWEELAEVGEEFVEFLEKELNITDPETETNEEPRQSNPFSSSATENTESRMRNEAGKxxxxxxxxxxxxxxxxxxxxxLGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query300 2.2.26 [Sep-21-2011]
B5YAR4 390 Chaperone protein DnaJ OS yes no 0.34 0.261 0.394 4e-14
Q83CJ2 313 Curved DNA-binding protei yes no 0.203 0.194 0.527 1e-13
A9NDK6 313 Curved DNA-binding protei yes no 0.203 0.194 0.527 1e-13
A9KE65 313 Curved DNA-binding protei yes no 0.203 0.194 0.527 1e-13
Q9QYI7227 DnaJ homolog subfamily B yes no 0.463 0.612 0.335 2e-13
Q8DKR7 373 Chaperone protein DnaJ OS yes no 0.516 0.415 0.335 3e-13
B7KEJ8 375 Chaperone protein DnaJ OS yes no 0.526 0.421 0.329 3e-13
Q5UP23 398 DnaJ-like protein R260 OS N/A no 0.203 0.153 0.535 4e-13
Q3AF07 381 Chaperone protein DnaJ OS yes no 0.203 0.160 0.549 4e-13
C0ZB49 375 Chaperone protein DnaJ OS yes no 0.2 0.16 0.549 7e-13
>sp|B5YAR4|DNAJ_DICT6 Chaperone protein DnaJ OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=dnaJ PE=3 SV=1 Back     alignment and function desciption
 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 61/114 (53%), Gaps = 12/114 (10%)

Query: 86  YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNT 145
           YE+LGV  +AT DEIK+AYR+L  +YHPD+NK+           P+A EKF  I  AY  
Sbjct: 8   YEILGVPRNATQDEIKQAYRRLVRQYHPDLNKD-----------PSAHEKFKEINEAYEV 56

Query: 146 LLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKD 199
           L + + R +YD      DFS   G  Q       + FG+  R+ +   E+FF D
Sbjct: 57  LSDPQKRAQYDQFGHVGDFS-GYGDFQGGWQPGGFDFGDLGRNFEDIFENFFGD 109
Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) (taxid: 309799)
>sp|Q83CJ2|CBPA_COXBU Curved DNA-binding protein OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=cbpA PE=3 SV=1 Back     alignment and function description
>sp|A9NDK6|CBPA_COXBR Curved DNA-binding protein OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=cbpA PE=3 SV=1 Back     alignment and function description
>sp|A9KE65|CBPA_COXBN Curved DNA-binding protein OS=Coxiella burnetii (strain Dugway 5J108-111) GN=cbpA PE=3 SV=1 Back     alignment and function description
>sp|Q9QYI7|DNJB8_MOUSE DnaJ homolog subfamily B member 8 OS=Mus musculus GN=Dnajb8 PE=2 SV=1 Back     alignment and function description
>sp|Q8DKR7|DNAJ_THEEB Chaperone protein DnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2 Back     alignment and function description
>sp|B7KEJ8|DNAJ_CYAP7 Chaperone protein DnaJ OS=Cyanothece sp. (strain PCC 7424) GN=dnaJ PE=3 SV=1 Back     alignment and function description
>sp|Q5UP23|YR260_MIMIV DnaJ-like protein R260 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R260 PE=3 SV=1 Back     alignment and function description
>sp|Q3AF07|DNAJ_CARHZ Chaperone protein DnaJ OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dnaJ PE=3 SV=1 Back     alignment and function description
>sp|C0ZB49|DNAJ_BREBN Chaperone protein DnaJ OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dnaJ PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
224053623278 predicted protein [Populus trichocarpa] 0.906 0.978 0.611 5e-86
225434865282 PREDICTED: chaperone protein DnaJ isofor 0.913 0.971 0.619 3e-85
356550299297 PREDICTED: chaperone protein DnaJ-like i 0.926 0.936 0.548 2e-78
225434867271 PREDICTED: chaperone protein DnaJ isofor 0.876 0.970 0.591 1e-76
255559018266 chaperone protein DNAj, putative [Ricinu 0.85 0.958 0.579 8e-76
363807028286 uncharacterized protein LOC100812972 [Gl 0.813 0.853 0.582 1e-72
147860005242 hypothetical protein VITISV_006764 [Viti 0.71 0.880 0.661 2e-72
357454237292 Chaperone protein DnaJ [Medicago truncat 0.896 0.921 0.513 2e-71
356550297280 PREDICTED: chaperone protein DnaJ-like i 0.896 0.960 0.519 7e-71
449496665273 PREDICTED: chaperone protein DnaJ-like [ 0.75 0.824 0.618 3e-69
>gi|224053623|ref|XP_002297902.1| predicted protein [Populus trichocarpa] gi|222845160|gb|EEE82707.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  323 bits (829), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 187/306 (61%), Positives = 218/306 (71%), Gaps = 34/306 (11%)

Query: 1   MHGLTYLSPTPHDNTLVYLPHLFAKSPLFHFQKQTNFTVTIPSCRFSYGDEFGVLLVSPQ 60
           MHG T + PTPH ++L  L  L ++S L+    Q    ++ PSCR+SYG  F ++   P 
Sbjct: 1   MHGFT-VRPTPH-SSLFCLTGLSSRSLLYL---QNKAKLSTPSCRYSYGGGFSLIFFGPS 55

Query: 61  PFRNFKKKRRSNFSTLLRASRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEIT 120
            F    K RR    TLLRASRRESPYEVLGV+PSA   EIKRAYRKLALKYHPDVNKE  
Sbjct: 56  VFAPVFKNRRRYSHTLLRASRRESPYEVLGVSPSAPPGEIKRAYRKLALKYHPDVNKET- 114

Query: 121 SVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTG---PSQNAQD- 176
                     NA+EKFMRIKHAYNTLLNSESRRKYD+GN +S FSYS+G    S + QD 
Sbjct: 115 ----------NAQEKFMRIKHAYNTLLNSESRRKYDAGN-SSGFSYSSGQKTQSSSTQDE 163

Query: 177 EEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEASASSQGKPKSLWEELAEVGEEFVEFLE 236
           EEFYG G           DFF+DLQEEFQNWEASA SQGKPKSLWEELAE+GEEFVEFLE
Sbjct: 164 EEFYGLG-----------DFFRDLQEEFQNWEASAPSQGKPKSLWEELAEIGEEFVEFLE 212

Query: 237 KELNITDPETETNEEP--RQSNPFSSSATENTESRMRNEAGKGSSIEESIDDIEATLAKL 294
           KELNITD E E N+    ++ + FSSS+T+ T +  +NE GK SSIE++ID+IEATLAKL
Sbjct: 213 KELNITDTEFEGNKNDGFQEDDFFSSSSTKRTGNGAQNEDGKSSSIEDNIDEIEATLAKL 272

Query: 295 KKELGL 300
           K+ELGL
Sbjct: 273 KRELGL 278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225434865|ref|XP_002282911.1| PREDICTED: chaperone protein DnaJ isoform 2 [Vitis vinifera] gi|297746036|emb|CBI16092.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356550299|ref|XP_003543525.1| PREDICTED: chaperone protein DnaJ-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|225434867|ref|XP_002282790.1| PREDICTED: chaperone protein DnaJ isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255559018|ref|XP_002520532.1| chaperone protein DNAj, putative [Ricinus communis] gi|223540374|gb|EEF41945.1| chaperone protein DNAj, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|363807028|ref|NP_001242578.1| uncharacterized protein LOC100812972 [Glycine max] gi|255640270|gb|ACU20425.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|147860005|emb|CAN81046.1| hypothetical protein VITISV_006764 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357454237|ref|XP_003597399.1| Chaperone protein DnaJ [Medicago truncatula] gi|355486447|gb|AES67650.1| Chaperone protein DnaJ [Medicago truncatula] Back     alignment and taxonomy information
>gi|356550297|ref|XP_003543524.1| PREDICTED: chaperone protein DnaJ-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|449496665|ref|XP_004160193.1| PREDICTED: chaperone protein DnaJ-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
TAIR|locus:2174239268 AT5G59610 [Arabidopsis thalian 0.53 0.593 0.448 6.9e-31
TIGR_CMR|CHY_0416 381 CHY_0416 "chaperone protein dn 0.296 0.233 0.457 6.1e-14
UNIPROTKB|Q5T657155 DNAJB5 "DnaJ homolog subfamily 0.323 0.625 0.383 2.4e-12
UNIPROTKB|G3MZ88223 DNAJB9 "Uncharacterized protei 0.353 0.475 0.368 3.1e-12
MGI|MGI:1351618222 Dnajb9 "DnaJ (Hsp40) homolog, 0.39 0.527 0.335 3.1e-12
UNIPROTKB|Q83CJ2 313 cbpA "Curved DNA-binding prote 0.203 0.194 0.527 4.6e-12
TIGR_CMR|CBU_1123 313 CBU_1123 "curved DNA-binding p 0.203 0.194 0.527 4.6e-12
UNIPROTKB|O25668288 C694_05300 "Co-chaperone-curve 0.306 0.319 0.401 5.3e-12
FB|FBgn0038145 403 Droj2 "DnaJ-like-2" [Drosophil 0.283 0.210 0.421 1.1e-11
UNIPROTKB|Q74B05 313 GSU2406 "DnaJ domain protein" 0.383 0.367 0.392 1.1e-11
TAIR|locus:2174239 AT5G59610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 78/174 (44%), Positives = 106/174 (60%)

Query:   129 QPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR-TSDFSYSTGPSQNAQ-DEEFYGFGNFL 186
             + NA+EKF++IKHAY TL+NS+SRRKY S +R T   +  T    N+Q +E+FYG G   
Sbjct:   107 EANAQEKFLKIKHAYTTLINSDSRRKYGSDSRATGSSTGQTSRKGNSQVEEDFYGLG--- 163

Query:   187 RDVQITIEDFFKDLQEEFQNWEASASSQGKPKSXXXXXXXXXXXXXXXXXXXXNITDPET 246
                     DFFKDLQEE++NWEASASSQGKPKS                    NI+D + 
Sbjct:   164 --------DFFKDLQEEYKNWEASASSQGKPKSLWEELSEIGEEFVEFLEKELNISDEDN 215

Query:   247 ETNEEPRQSNPFSSSATENTESRMRNEAGKGSSIEESIDDIEATLAKLKKELGL 300
             E + +  +   F   +TE +  +  N +   +SIE++ID+IEATLA+LKK+LGL
Sbjct:   216 EGSSKNGERFDFEEGSTEKSSGK--NNSSTKNSIEDNIDEIEATLAQLKKDLGL 267
GO:0006457 "protein folding" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0031072 "heat shock protein binding" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
TIGR_CMR|CHY_0416 CHY_0416 "chaperone protein dnaJ" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q5T657 DNAJB5 "DnaJ homolog subfamily B member 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3MZ88 DNAJB9 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1351618 Dnajb9 "DnaJ (Hsp40) homolog, subfamily B, member 9" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q83CJ2 cbpA "Curved DNA-binding protein" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1123 CBU_1123 "curved DNA-binding protein" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|O25668 C694_05300 "Co-chaperone-curved DNA binding protein A (CbpA)" [Helicobacter pylori 26695 (taxid:85962)] Back     alignment and assigned GO terms
FB|FBgn0038145 Droj2 "DnaJ-like-2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q74B05 GSU2406 "DnaJ domain protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_I0625
hypothetical protein (278 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00130164
hypothetical protein (660 aa)
  •     0.501
grail3.0261001401
hypothetical protein (124 aa)
  •     0.500
eugene3.02610008
hypothetical protein (132 aa)
  •     0.500
eugene3.00860035
hypothetical protein (705 aa)
  •     0.500
eugene3.00120231
hypothetical protein (668 aa)
  •     0.500
estExt_fgenesh4_pm.C_LG_I0291
SubName- Full=Putative uncharacterized protein; (666 aa)
  •     0.500
estExt_fgenesh4_pg.C_1500058
hypothetical protein (706 aa)
  •     0.500
estExt_Genewise1_v1.C_LG_III0234
hypothetical protein (666 aa)
  •     0.500
gw1.XIII.1526.1
annotation not avaliable (81 aa)
  •     0.499
grail3.0009008001
hypothetical protein (572 aa)
  •     0.499

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
TIGR02349 354 TIGR02349, DnaJ_bact, chaperone protein DnaJ 1e-24
pfam0022663 pfam00226, DnaJ, DnaJ domain 2e-24
COG0484 371 COG0484, DnaJ, DnaJ-class molecular chaperone with 6e-24
smart0027160 smart00271, DnaJ, DnaJ molecular chaperone homolog 4e-21
PRK14291 382 PRK14291, PRK14291, chaperone protein DnaJ; Provis 8e-21
PRK14280 376 PRK14280, PRK14280, chaperone protein DnaJ; Provis 2e-20
PRK14293 374 PRK14293, PRK14293, chaperone protein DnaJ; Provis 5e-20
cd0625755 cd06257, DnaJ, DnaJ domain or J-domain 7e-20
PRK10767 371 PRK10767, PRK10767, chaperone protein DnaJ; Provis 2e-19
PRK14276 380 PRK14276, PRK14276, chaperone protein DnaJ; Provis 6e-19
PRK14281 397 PRK14281, PRK14281, chaperone protein DnaJ; Provis 2e-18
PRK14292 371 PRK14292, PRK14292, chaperone protein DnaJ; Provis 6e-18
PRK14298 377 PRK14298, PRK14298, chaperone protein DnaJ; Provis 2e-17
PRK14299291 PRK14299, PRK14299, chaperone protein DnaJ; Provis 2e-17
PRK14278 378 PRK14278, PRK14278, chaperone protein DnaJ; Provis 1e-16
PRK14301 373 PRK14301, PRK14301, chaperone protein DnaJ; Provis 2e-16
PRK14296 372 PRK14296, PRK14296, chaperone protein DnaJ; Provis 6e-16
PRK14277 386 PRK14277, PRK14277, chaperone protein DnaJ; Provis 8e-16
PRK14283 378 PRK14283, PRK14283, chaperone protein DnaJ; Provis 9e-16
PRK14284 391 PRK14284, PRK14284, chaperone protein DnaJ; Provis 1e-15
PRK14295 389 PRK14295, PRK14295, chaperone protein DnaJ; Provis 1e-15
PRK14287 371 PRK14287, PRK14287, chaperone protein DnaJ; Provis 2e-15
PRK14297 380 PRK14297, PRK14297, chaperone protein DnaJ; Provis 3e-15
PRK14294 366 PRK14294, PRK14294, chaperone protein DnaJ; Provis 7e-15
COG2214237 COG2214, CbpA, DnaJ-class molecular chaperone [Pos 2e-14
PRK10266306 PRK10266, PRK10266, curved DNA-binding protein Cbp 4e-14
PRK14289 386 PRK14289, PRK14289, chaperone protein DnaJ; Provis 9e-14
PRK14279 392 PRK14279, PRK14279, chaperone protein DnaJ; Provis 3e-13
PRK14282 369 PRK14282, PRK14282, chaperone protein DnaJ; Provis 1e-12
PRK14286 372 PRK14286, PRK14286, chaperone protein DnaJ; Provis 2e-12
PRK14290 365 PRK14290, PRK14290, chaperone protein DnaJ; Provis 4e-12
PRK14285 365 PRK14285, PRK14285, chaperone protein DnaJ; Provis 5e-12
TIGR03835 871 TIGR03835, termin_org_DnaJ, terminal organelle ass 8e-11
PTZ00037 421 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov 2e-10
COG5407 610 COG5407, SEC63, Preprotein translocase subunit Sec 2e-09
PRK14300 372 PRK14300, PRK14300, chaperone protein DnaJ; Provis 4e-09
PRK09430267 PRK09430, djlA, Dna-J like membrane chaperone prot 4e-09
PRK14288 369 PRK14288, PRK14288, chaperone protein DnaJ; Provis 9e-09
COG5269 379 COG5269, ZUO1, Ribosome-associated chaperone zuoti 2e-05
COG1076174 COG1076, DjlA, DnaJ-domain-containing proteins 1 [ 8e-04
PTZ00100116 PTZ00100, PTZ00100, DnaJ chaperone protein; Provis 0.003
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ Back     alignment and domain information 
 Score =  101 bits (254), Expect = 1e-24
 Identities = 42/115 (36%), Positives = 52/115 (45%), Gaps = 19/115 (16%)

Query: 86  YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNT 145
           YE+LGV+  A+ +EIK+AYRKLA KYHPD NK+             AEEKF  I  AY  
Sbjct: 3   YEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD-----------KEAEEKFKEINEAYEV 51

Query: 146 LLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDL 200
           L + E R +YD            G        +   FG+F         D F D 
Sbjct: 52  LSDPEKRAQYDQFGHAGFNGGGGGGGGGFNGFDIGFFGDF--------GDIFGDF 98

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain Back     alignment and domain information
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain Back     alignment and domain information
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain Back     alignment and domain information
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ Back     alignment and domain information
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional Back     alignment and domain information
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 300
COG0484 371 DnaJ DnaJ-class molecular chaperone with C-termina 99.97
PRK14296 372 chaperone protein DnaJ; Provisional 99.91
KOG0712 337 consensus Molecular chaperone (DnaJ superfamily) [ 99.91
PRK14288 369 chaperone protein DnaJ; Provisional 99.91
PRK14286 372 chaperone protein DnaJ; Provisional 99.9
PRK14282 369 chaperone protein DnaJ; Provisional 99.89
PRK14279 392 chaperone protein DnaJ; Provisional 99.89
PRK14276 380 chaperone protein DnaJ; Provisional 99.89
PRK14297 380 chaperone protein DnaJ; Provisional 99.89
PRK14285 365 chaperone protein DnaJ; Provisional 99.89
PRK14287 371 chaperone protein DnaJ; Provisional 99.89
PRK14301 373 chaperone protein DnaJ; Provisional 99.89
PTZ00037 421 DnaJ_C chaperone protein; Provisional 99.88
PRK14277 386 chaperone protein DnaJ; Provisional 99.88
PRK14298 377 chaperone protein DnaJ; Provisional 99.88
PRK14294 366 chaperone protein DnaJ; Provisional 99.88
PRK14291 382 chaperone protein DnaJ; Provisional 99.88
KOG0713 336 consensus Molecular chaperone (DnaJ superfamily) [ 99.88
PRK14280 376 chaperone protein DnaJ; Provisional 99.88
PRK14283 378 chaperone protein DnaJ; Provisional 99.88
PRK10767 371 chaperone protein DnaJ; Provisional 99.88
PRK14284 391 chaperone protein DnaJ; Provisional 99.88
PRK14278 378 chaperone protein DnaJ; Provisional 99.87
PRK14295 389 chaperone protein DnaJ; Provisional 99.87
TIGR02349 354 DnaJ_bact chaperone protein DnaJ. This model repre 99.87
PRK14281 397 chaperone protein DnaJ; Provisional 99.86
PRK14290 365 chaperone protein DnaJ; Provisional 99.86
PRK14300 372 chaperone protein DnaJ; Provisional 99.85
PRK14292 371 chaperone protein DnaJ; Provisional 99.84
PRK14289 386 chaperone protein DnaJ; Provisional 99.84
PRK14293 374 chaperone protein DnaJ; Provisional 99.84
PRK14299291 chaperone protein DnaJ; Provisional 99.81
KOG0717 508 consensus Molecular chaperone (DnaJ superfamily) [ 99.79
KOG0715288 consensus Molecular chaperone (DnaJ superfamily) [ 99.78
PRK10266 306 curved DNA-binding protein CbpA; Provisional 99.76
PF0022664 DnaJ: DnaJ domain; InterPro: IPR001623 The prokary 99.76
KOG0716279 consensus Molecular chaperone (DnaJ superfamily) [ 99.73
KOG0719264 consensus Molecular chaperone (DnaJ superfamily) [ 99.73
KOG0691296 consensus Molecular chaperone (DnaJ superfamily) [ 99.68
KOG0718 546 consensus Molecular chaperone (DnaJ superfamily) [ 99.68
PTZ00341 1136 Ring-infected erythrocyte surface antigen; Provisi 99.66
smart0027160 DnaJ DnaJ molecular chaperone homology domain. 99.66
cd0625755 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho 99.63
PHA03102153 Small T antigen; Reviewed 99.58
TIGR03835 871 termin_org_DnaJ terminal organelle assembly protei 99.56
COG2214237 CbpA DnaJ-class molecular chaperone [Posttranslati 99.55
KOG0721230 consensus Molecular chaperone (DnaJ superfamily) [ 99.54
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 99.54
COG5269 379 ZUO1 Ribosome-associated chaperone zuotin [Transla 99.52
PRK05014171 hscB co-chaperone HscB; Provisional 99.52
PRK01356166 hscB co-chaperone HscB; Provisional 99.48
PRK00294173 hscB co-chaperone HscB; Provisional 99.48
PRK03578176 hscB co-chaperone HscB; Provisional 99.46
KOG0720490 consensus Molecular chaperone (DnaJ superfamily) [ 99.43
PTZ00100116 DnaJ chaperone protein; Provisional 99.39
PRK09430267 djlA Dna-J like membrane chaperone protein; Provis 99.38
KOG0722329 consensus Molecular chaperone (DnaJ superfamily) [ 99.38
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 99.35
KOG0714306 consensus Molecular chaperone (DnaJ superfamily) [ 99.31
PHA02624 647 large T antigen; Provisional 99.22
PRK01773173 hscB co-chaperone HscB; Provisional 99.18
COG5407 610 SEC63 Preprotein translocase subunit Sec63 [Intrac 99.07
TIGR00714157 hscB Fe-S protein assembly co-chaperone HscB. This 99.05
KOG1150250 consensus Predicted molecular chaperone (DnaJ supe 98.85
KOG0568342 consensus Molecular chaperone (DnaJ superfamily) [ 98.45
KOG1789 2235 consensus Endocytosis protein RME-8, contains DnaJ 98.3
KOG0723112 consensus Molecular chaperone (DnaJ superfamily) [ 98.13
COG1076174 DjlA DnaJ-domain-containing proteins 1 [Posttransl 97.34
KOG3192168 consensus Mitochondrial J-type chaperone [Posttran 97.3
COG1076174 DjlA DnaJ-domain-containing proteins 1 [Posttransl 96.45
KOG0431453 consensus Auxilin-like protein and related protein 96.34
PF03656127 Pam16: Pam16; InterPro: IPR005341 The Pam16 protei 95.11
KOG0724 335 consensus Zuotin and related molecular chaperones 85.65
PF1344662 RPT: A repeated domain in UCH-protein 85.3
PF11833194 DUF3353: Protein of unknown function (DUF3353); In 83.19
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.97  E-value=1.2e-31  Score=254.89  Aligned_cols=155  Identities=34%  Similarity=0.421  Sum_probs=120.0

Q ss_pred             CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804           81 RRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR  160 (300)
Q Consensus        81 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~  160 (300)
                      ..+|||+||||+++||.+|||+|||+||++||||+|+.          +++|+++|++|++||+|||||++|+.||+++.
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g----------~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~   71 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPG----------DKEAEEKFKEINEAYEVLSDPEKRAAYDQFGH   71 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----------CHHHHHHHHHHHHHHHHhCCHHHHHHhhccCc
Confidence            36899999999999999999999999999999999994          38899999999999999999999999999996


Q ss_pred             CCCCCCCCCCCCCCcccccccCCCcccccccchhHHhhhHHHHHHHhhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 040804          161 TSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDLQEEFQNWEASASSQGKPKSLWEELAEVGEEFVEFLEKELN  240 (300)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~f~g~g~~~~~~~~~~~~~f~~~~~~~~~~~a~~~~~~kp~d~~eel~~~~eef~~~~ek~~~  240 (300)
                      ....  ..+. ...   .|.+||.       .+.|+|..++..-..-+.......+..|++..+...++|.+.+.++.++
T Consensus        72 ~~~~--~gg~-gg~---g~~~fgg-------~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~  138 (371)
T COG0484          72 AGFK--AGGF-GGF---GFGGFGG-------DFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIR  138 (371)
T ss_pred             cccc--cCCc-CCC---CcCCCCC-------CHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEe
Confidence            5432  1110 000   2222222       5677777777410000011123446778999999999999999999999


Q ss_pred             ccccCccCCCCCCccCcc
Q 040804          241 ITDPETETNEEPRQSNPF  258 (300)
Q Consensus       241 i~r~~~C~~c~g~~~~~~  258 (300)
                      +.+.+.|++|+|.....-
T Consensus       139 ~~~~~~C~~C~GsGak~g  156 (371)
T COG0484         139 VTRSVTCSTCHGSGAKPG  156 (371)
T ss_pred             cceeeECCcCCCCCCCCC
Confidence            999999999999866654

>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] Back     alignment and domain information
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional Back     alignment and domain information
>smart00271 DnaJ DnaJ molecular chaperone homology domain Back     alignment and domain information
>cd06257 DnaJ DnaJ domain or J-domain Back     alignment and domain information
>PHA03102 Small T antigen; Reviewed Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05014 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK01356 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK00294 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK03578 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00100 DnaJ chaperone protein; Provisional Back     alignment and domain information
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional Back     alignment and domain information
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02624 large T antigen; Provisional Back     alignment and domain information
>PRK01773 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB Back     alignment and domain information
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only] Back     alignment and domain information
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) [] Back     alignment and domain information
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13446 RPT: A repeated domain in UCH-protein Back     alignment and domain information
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
2lo1_A71 Nmr Structure Of The Protein Bc008182, A Dnaj-Like 1e-12
2cug_A88 Solution Structure Of The J Domain Of The Pseudo Dn 2e-11
2och_A73 J-domain Of Dnj-12 From Caenorhabditis Elegans Leng 9e-11
2ctr_A88 Solution Structure Of J-Domain From Human Dnaj Subf 2e-10
1hdj_A77 Human Hsp40 (Hdj-1), Nmr Length = 77 4e-10
2ctw_A109 Solution Structure Of J-Domain From Mouse Dnaj Subf 4e-10
2dn9_A79 Solution Structure Of J-Domain From The Dnaj Homolo 5e-10
2ctp_A78 Solution Structure Of J-Domain From Human Dnaj Subf 6e-10
1xbl_A107 Nmr Structure Of The J-Domain (Residues 2-76) In Th 8e-10
1bq0_A103 J-Domain (Residues 1-77) Of The Escherichia Coli N- 8e-10
2lgw_A99 Solution Structure Of The J Domain Of Hsj1a Length 5e-09
3apo_A 780 Crystal Structure Of Full-Length Erdj5 Length = 780 6e-09
3apq_A210 Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt 8e-09
2l6l_A155 Solution Structure Of Human J-Protein Co-Chaperone, 1e-08
2dmx_A92 Solution Structure Of The J Domain Of Dnaj Homolog 2e-08
2ej7_A82 Solution Structure Of The Dnaj Domain Of The Human 2e-08
1bqz_A77 J-Domain (Residues 1-77) Of The Escherichia Coli N- 3e-08
3lz8_A329 Structure Of A Putative Chaperone Dnaj From Klebsie 1e-07
2y4u_A450 Crystal Structure Of Human P58(Ipk) In Space Group 2e-07
2kqx_A73 Nmr Structure Of The J-Domain (Residues 2-72) In Th 2e-07
2y4t_A450 Crystal Structure Of The Human Co-Chaperone P58(Ipk 2e-07
2o37_A92 J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S 5e-07
1wjz_A94 Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P 1e-06
2yua_A99 Solution Structure Of The Dnaj Domain From Human Wi 1e-06
2ys8_A90 Solution Structure Of The Dnaj-Like Domain From Hum 3e-04
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71 Back     alignment and structure 
Iteration: 1

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 13/74 (17%)
Query: 86  YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNT 145
           Y+VLGV P+AT +E+K+AYRKLALKYHPD N             PN  EKF +I  AY  
Sbjct: 9   YDVLGVKPNATQEELKKAYRKLALKYHPDKN-------------PNEGEKFKQISQAYEV 55
Query: 146 LLNSESRRKYDSGN 159
           L +++ R  YD G 
Sbjct: 56  LSDAKKRELYDKGG 69
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88 Back     alignment and structure
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73 Back     alignment and structure
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88 Back     alignment and structure
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77 Back     alignment and structure
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109 Back     alignment and structure
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79 Back     alignment and structure
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78 Back     alignment and structure
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107 Back     alignment and structure
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103 Back     alignment and structure
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99 Back     alignment and structure
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780 Back     alignment and structure
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210 Back     alignment and structure
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155 Back     alignment and structure
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92 Back     alignment and structure
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82 Back     alignment and structure
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77 Back     alignment and structure
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329 Back     alignment and structure
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450 Back     alignment and structure
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73 Back     alignment and structure
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450 Back     alignment and structure
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92 Back     alignment and structure
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94 Back     alignment and structure
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99 Back     alignment and structure
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras- Associated Protein Rap1 Length = 90 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
3lz8_A 329 Putative chaperone DNAJ; structure genomics, struc 7e-30
2l6l_A155 DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, 1e-28
1hdj_A77 Human HSP40, HDJ-1; molecular chaperone; NMR {Homo 8e-26
2cug_A88 Mkiaa0962 protein; DNAJ-like domain, structural ge 1e-25
2ctp_A78 DNAJ homolog subfamily B member 12; J-domain, chap 3e-25
3apq_A210 DNAJ homolog subfamily C member 10; thioredoxin fo 5e-25
2och_A73 Hypothetical protein DNJ-12; HSP40, J-domain, chap 1e-24
2yua_A99 Williams-beuren syndrome chromosome region 18 prot 3e-24
2ctr_A88 DNAJ homolog subfamily B member 9; J-domain, chape 6e-24
1wjz_A94 1700030A21RIK protein; J-domain, DNAJ like protein 6e-24
2o37_A92 Protein SIS1; HSP40, J-domain, cochaperone, APC900 1e-23
2ys8_A90 RAB-related GTP-binding protein RABJ; DNAJ domain, 1e-23
2ctq_A112 DNAJ homolog subfamily C member 12; J-domain, chap 2e-23
2dn9_A79 DNAJ homolog subfamily A member 3; J-domain, TID1, 2e-23
2ctw_A109 DNAJ homolog subfamily C member 5; J-domain, chape 5e-23
2ej7_A82 HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati 6e-23
2dmx_A92 DNAJ homolog subfamily B member 8; DNAJ J domain, 7e-23
2lgw_A99 DNAJ homolog subfamily B member 2; J domain, HSJ1A 3e-22
1bq0_A103 DNAJ, HSP40; chaperone, heat shock, protein foldin 6e-22
2qsa_A109 DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s 2e-21
2pf4_E174 Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, 2e-21
3apo_A 780 DNAJ homolog subfamily C member 10; PDI family, th 5e-20
1gh6_A114 Large T antigen; tumor suppressor, oncoprotein, an 1e-19
1iur_A88 KIAA0730 protein; DNAJ like domain, riken structur 2e-18
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 1e-16
3hho_A174 CO-chaperone protein HSCB homolog; structural geno 1e-13
1faf_A79 Large T antigen; J domain, HPD motif, anti-paralle 9e-13
1fpo_A171 HSC20, chaperone protein HSCB; molecular chaperone 1e-12
1n4c_A182 Auxilin; four helix bundle, protein binding; NMR { 2e-10
2guz_A71 Mitochondrial import inner membrane translocase su 3e-10
3uo3_A181 J-type CO-chaperone JAC1, mitochondrial; structura 9e-10
3ag7_A106 Putative uncharacterized protein F9E10.5; J-domain 2e-09
3bvo_A207 CO-chaperone protein HSCB, mitochondrial precurso; 2e-09
2qwo_B92 Putative tyrosine-protein phosphatase auxilin; cha 9e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329 Back     alignment and structure
 Score =  114 bits (287), Expect = 7e-30
 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 21/116 (18%)

Query: 85  PYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYN 144
            Y +LGV P+     IK AYR+LA KYHPDV+KE            +AE KF  +  A+ 
Sbjct: 30  YYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-----------NDAEAKFKDLAEAWE 78

Query: 145 TLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKDL 200
            L + + R +YD   +    +      Q    E+ Y   +F        +D F  +
Sbjct: 79  VLKDEQRRAEYDQLWQ--HRNDPGFGRQRQTHEQSYSQQDF--------DDIFSSM 124
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155 Back     alignment and structure
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77 Back     alignment and structure
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88 Back     alignment and structure
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78 Back     alignment and structure
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210 Back     alignment and structure
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73 Back     alignment and structure
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 Back     alignment and structure
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94 Back     alignment and structure
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92 Back     alignment and structure
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90 Back     alignment and structure
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112 Back     alignment and structure
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109 Back     alignment and structure
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82 Back     alignment and structure
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99 Back     alignment and structure
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103 Back     alignment and structure
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109 Back     alignment and structure
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174 Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 Back     alignment and structure
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114 Back     alignment and structure
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79 Back     alignment and structure
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171 Back     alignment and structure
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182 Back     alignment and structure
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71 Back     alignment and structure
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181 Back     alignment and structure
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106 Back     alignment and structure
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207 Back     alignment and structure
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
2dn9_A79 DNAJ homolog subfamily A member 3; J-domain, TID1, 99.84
2ctp_A78 DNAJ homolog subfamily B member 12; J-domain, chap 99.83
1hdj_A77 Human HSP40, HDJ-1; molecular chaperone; NMR {Homo 99.83
2ctr_A88 DNAJ homolog subfamily B member 9; J-domain, chape 99.82
2cug_A88 Mkiaa0962 protein; DNAJ-like domain, structural ge 99.82
2ej7_A82 HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati 99.82
2yua_A99 Williams-beuren syndrome chromosome region 18 prot 99.82
2och_A73 Hypothetical protein DNJ-12; HSP40, J-domain, chap 99.82
2dmx_A92 DNAJ homolog subfamily B member 8; DNAJ J domain, 99.81
1wjz_A94 1700030A21RIK protein; J-domain, DNAJ like protein 99.81
1bq0_A103 DNAJ, HSP40; chaperone, heat shock, protein foldin 99.81
2lgw_A99 DNAJ homolog subfamily B member 2; J domain, HSJ1A 99.8
2ctw_A109 DNAJ homolog subfamily C member 5; J-domain, chape 99.8
2ctq_A112 DNAJ homolog subfamily C member 12; J-domain, chap 99.79
2o37_A92 Protein SIS1; HSP40, J-domain, cochaperone, APC900 99.79
2ys8_A90 RAB-related GTP-binding protein RABJ; DNAJ domain, 99.76
3lz8_A 329 Putative chaperone DNAJ; structure genomics, struc 99.76
2qsa_A109 DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s 99.74
3apq_A210 DNAJ homolog subfamily C member 10; thioredoxin fo 99.73
2l6l_A155 DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, 99.73
1gh6_A114 Large T antigen; tumor suppressor, oncoprotein, an 99.72
1faf_A79 Large T antigen; J domain, HPD motif, anti-paralle 99.71
3hho_A174 CO-chaperone protein HSCB homolog; structural geno 99.71
3bvo_A207 CO-chaperone protein HSCB, mitochondrial precurso; 99.71
1fpo_A171 HSC20, chaperone protein HSCB; molecular chaperone 99.7
1iur_A88 KIAA0730 protein; DNAJ like domain, riken structur 99.68
2pf4_E174 Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, 99.67
1n4c_A182 Auxilin; four helix bundle, protein binding; NMR { 99.65
2guz_A71 Mitochondrial import inner membrane translocase su 99.64
2qwo_B92 Putative tyrosine-protein phosphatase auxilin; cha 99.62
3ag7_A106 Putative uncharacterized protein F9E10.5; J-domain 99.61
3uo3_A181 J-type CO-chaperone JAC1, mitochondrial; structura 99.6
3apo_A 780 DNAJ homolog subfamily C member 10; PDI family, th 99.56
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 99.05
2guz_B65 Mitochondrial import inner membrane translocase su 98.97
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 89.1
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
Probab=99.84  E-value=3.8e-21  Score=145.11  Aligned_cols=72  Identities=42%  Similarity=0.719  Sum_probs=65.8

Q ss_pred             CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCC
Q 040804           80 SRRESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGN  159 (300)
Q Consensus        80 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~  159 (300)
                      ....|+|+||||+++|+.++||+|||+|+++||||+++.          .+.+.++|++|++||+||+||.+|+.||..+
T Consensus         4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~----------~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g   73 (79)
T 2dn9_A            4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKD----------DPKAKEKFSQLAEAYEVLSDEVKRKQYDAYG   73 (79)
T ss_dssp             SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSS----------CTTHHHHHHHHHHHHHHHHSHHHHHHHHHSC
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----------CHHHHHHHHHHHHHHHHHCCHHHHHHHHhcc
Confidence            346799999999999999999999999999999999875          3568999999999999999999999999987


Q ss_pred             CC
Q 040804          160 RT  161 (300)
Q Consensus       160 ~~  161 (300)
                      ..
T Consensus        74 ~~   75 (79)
T 2dn9_A           74 SG   75 (79)
T ss_dssp             CC
T ss_pred             Cc
Confidence            53
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Back     alignment and structure
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Back     alignment and structure
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Back     alignment and structure
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Back     alignment and structure
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Back     alignment and structure
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Back     alignment and structure
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Back     alignment and structure
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Back     alignment and structure
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Back     alignment and structure
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Back     alignment and structure
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Back     alignment and structure
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Back     alignment and structure
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Back     alignment and structure
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Back     alignment and structure
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 300
d1nz6a_98 a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T 1e-16
d1wjza_94 a.2.3.1 (A:) CSL-type zinc finger-containing prote 3e-16
d1xbla_75 a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain 9e-15
d1fpoa176 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma 1e-14
d1iura_88 a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human 4e-14
d1fafa_79 a.2.3.1 (A:) Large T antigen, the N-terminal J dom 6e-14
d1hdja_77 a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9 3e-13
d1gh6a_114 a.2.3.1 (A:) Large T antigen, the N-terminal J dom 3e-10
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98 Back     information, alignment and structure

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.5 bits (175), Expect = 1e-16
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 12/98 (12%)

Query: 63  RNFKKKRRSNFSTLLRASRR-----ESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNK 117
             + + +  N   LL          E+ ++ +G+A   T +++K+ YRK  L  HPD   
Sbjct: 8   LEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKAT 67

Query: 118 EITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKY 155
                      +  A+  FM +  A++   N   +  Y
Sbjct: 68  GQPY-------EQYAKMIFMELNDAWSEFENQGQKPLY 98
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 Back     information, alignment and structure
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75 Back     information, alignment and structure
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76 Back     information, alignment and structure
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79 Back     information, alignment and structure
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77 Back     information, alignment and structure
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
d1xbla_75 DnaJ chaperone, N-terminal (J) domain {Escherichia 99.87
d1hdja_77 HSP40 {Human (Homo sapiens) [TaxId: 9606]} 99.84
d1wjza_94 CSL-type zinc finger-containing protein 3 (J-domai 99.82
d1gh6a_114 Large T antigen, the N-terminal J domain {Simian v 99.81
d1fafa_79 Large T antigen, the N-terminal J domain {Murine p 99.75
d1fpoa176 HSC20 (HSCB), N-terminal (J) domain {Escherichia c 99.74
d1nz6a_98 Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} 99.64
d1iura_88 Hypothetical protein KIAA0730 {Human (Homo sapiens 99.64
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=4.8e-23  Score=152.82  Aligned_cols=69  Identities=45%  Similarity=0.779  Sum_probs=64.3

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCccccchhhhhcCCCchhHHHHHHHHHHHHHhhchhhhhhhcCCCC
Q 040804           82 RESPYEVLGVAPSATADEIKRAYRKLALKYHPDVNKEITSVFQIFGIQPNAEEKFMRIKHAYNTLLNSESRRKYDSGNR  160 (300)
Q Consensus        82 ~~d~Y~iLgv~~~as~~eIK~aYr~l~k~~HPDk~~~~~~~~~~~~~~~~a~~~f~~I~~AY~vLsd~~~R~~YD~~~~  160 (300)
                      .+|||+||||+++||.+|||+|||+|+++||||++++          .+.+.++|+.|++||+||+||.+|+.||..|.
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~----------~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~   70 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG----------DKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH   70 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTT----------TCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTT
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCC----------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCc
Confidence            5799999999999999999999999999999999875          36678899999999999999999999999874
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Back     information, alignment and structure
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Back     information, alignment and structure
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure