Citrus Sinensis ID: 040805

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540
Protein Sequence
MNRKLCFTLFTLSVLVLCAGLALATKDPELKQCKHQCRARQQYDEKQKEQCARTCEEYYKEKEQRERHREGESEEEKEWGGRHEWMNPGEPAEKHLRQCQRECDRQEEGGQQRALCRFRCQEKYRREKEGEGGQHNTQEEEEEEEGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSRWHQQQQGRAYE
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccccccHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccHHcccccccEEEccccEEEEEcccccccHHccccccEEEEEEEEcccEEccccccccccEEEEEEccEEEEEEEcccEEEEEEccccEEEEccccEEEEEEcccccEEEEEEEEEcccccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccEEEEcHHHHHHHcccccccccccccccccccccccccccccccccccEEEEcccccccccccccEEEEEEEccccccccccccccEEEEEEEEccEEEEEEcccccccccccccccccccccccccEEEEEEEEccccEEEEcccccEEEEEcccccEEEEEEEEcccccccccccccHHHHHcccHHHHHHHccccHHHHHHHHHcccccEEEEccccHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHcccHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccEEEEEHccHHHccccccccccccccccccccccccccEEEEEccEEEEEEcccccccHHHcccccEEEEEEEEcccEEEEEEEEccEEEEEEEEcEEEEEEEEccEEEEEEEEcccEEEEccccEEEEEEccccccEEEEEEEEcccccccccEEEcccccccccHHHHccHHHHHHHHcccHHHHHcccccccccccEEEcHHHHHHcccHccccccccccccccccccEccccccEEEccEEEEEEcccccHHHHHHccEEEEEEEcccEEEEEEEEcccEEEEEEEEccEEEEEEcccccEEEccccccEcEEEEccccEEEEEEEEEccccEEEEccccEEEEEEcccccEEEEEEEEccccccccccccccHHHHHccHHHHHHHccccHHHHHHHHHcccccEEEcccccccccccccccc
Coil and Loop (DISEMBL)
MNRKLCFTLFTLSVLVLCAGLalatkdpelkqCKHQCRARQQYDEKQKEQCARTCEEYYKEKEQrerhregeseeekewggrhewmnpgepaeKHLRQCQRECDRQEEGGQQRALCRFRCQEKYrrekegeggqhntqeeeeeeegdeessrvtsqhgrvaflpkFTQRSKLLRGLEKYRLGIlianpqtfvtpthldadavffvswGQGTITVIREnnresynvkrgdiirvpsgntfyvtntdddeKLYIVKFIKsinlpgqyeafygaggenpesFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSrsqegpsiwpfagesrgtfnlfgkrpshsnnfgelfeadsndfrpledlditvsyaniskgamaapfynsrsTKVAVVVAGdgyieiacphvsrssserrhqgsstreegsaTYHKVSSrirtdsayivpaghpvvtVASQNNNLEVVCFEInaegnirfplagRNKIFKVMESEAKELAFNTRADEVervfgnqdqdwffkgpsrwhqqqqgraye
Flexible Loop (DISEMBL)
MNRKLCFTLFTLSVLVLCAGLALATKDPELKQCKHQCRARQQYDEKQKEQCARTCEEYYkekeqrerhregeseeekewggrhewmnpgEPAEKHLRQCQRECDrqeeggqqralCRFRCQEKyrrekegeggqhntqeeeeeeegdeessrvtsqhgrvaflpkftqrsKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTItvirennresynvkrgdiirvpsgntfyvtntdddekLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSrsqegpsiwpFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGamaapfynsrSTKVAVVVAGDGYIEIacphvsrssserrhqgsstreegsatyhkVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNqdqdwffkgpsrwhqqqqgraye
Low Complexity Region (SEG)
MNRKLCFTLFTLSVLVLCAGLALATKDPELKQCKHQCRARQQYDEKQKEQCARTCeeyykekeqrerhregeseeekewggrheWMNPGEPAEKHLRQCQRECDRQEEGGQQRALCRFRCQekyrrekegeggqhntqeeeeeeegdeeSSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSRWHQQQQGRAYE
Disordered region (IsUnstruct)
****LCFTLFTLSVLVLCAGLALATKDPEL**C******************************************************************************************************************************VAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLF**************************IWPFAG***GTFNLF***********ELFEA**NDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPH*****************************IRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKG**************
Disordered Region (DISOPRED)
***KLCFTLFTLSVLVLCAGLALA********************************************************************************************************************************VTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKT*******************************************SRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIAC**************************KVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEV*****N***********************
Disordered Region (DISEMBL)
MNRKLCFTLFTLSVLVLCAGLALATKDPELK********************ARTCEEY***********************RHEWMNPGEPAE******************QRALCRFRCQEKY********************************HGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQD********************GPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPH***************************SRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKG**************
Disordered Region (DISPRO)
*NRKLCFTLFTLSVLVLCAGLALATKDPELKQCKHQCRARQQYD*KQ***CARTCEEYYK*************************************QCQRECD******QQRALCRFRCQE*****************EEEEEEGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALS****************GTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFK***************
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNRKLCFTLFTLSVLVLCAGLALATKDPELKQCKHQCRARQQYDEKQKEQCARTCEEYYKEKEQRERHREGESEEEKEWGGRHEWMNPGEPAEKHLRQCQRECDRQEEGGQQRALCRFRCQEKYRREKEGEGGQHNTQEEEEEEEGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSRWHQQQQGRAYE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	540	2.2.26 [Sep-21-2011]
Q9SPL5	666	Vicilin-like antimicrobia	N/A	no	0.938	0.761	0.418	1e-110
Q9SPL4	666	Vicilin-like antimicrobia	N/A	no	0.937	0.759	0.412	1e-106
Q9SPL3	625	Vicilin-like antimicrobia	N/A	no	0.937	0.809	0.412	1e-104
P15590	573	Globulin-1 S allele OS=Ze	N/A	no	0.687	0.647	0.408	6e-86
Q04672	524	Sucrose-binding protein O	no	no	0.675	0.696	0.400	4e-82
P09799	605	Vicilin GC72-A OS=Gossypi	N/A	no	0.951	0.849	0.342	2e-76
P09801	588	Vicilin C72 OS=Gossypium	N/A	no	0.920	0.845	0.350	3e-76
Q43358	525	Vicilin OS=Theobroma caca	N/A	no	0.679	0.699	0.373	2e-69
P13915	571	Convicilin OS=Pisum sativ	N/A	no	0.661	0.625	0.357	4e-59
P13916	605	Beta-conglycinin, alpha c	no	no	0.688	0.614	0.320	3e-56

>sp|Q9SPL5|AMP21_MACIN Vicilin-like antimicrobial peptides 2-1 OS=Macadamia integrifolia GN=AMP2-1 PE=2 SV=1

 Score =  398 bits (1022), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/537 (41%), Positives = 333/537 (62%), Gaps = 30/537 (5%)

Query: 26  KDPE--LKQCKHQCRARQQYDEKQKEQCARTCEEYY-KEK-EQRERHREGESEEEKEWGG 81
           +DP+   +QC+  C+ R++ + +  + C + CE  Y KEK +Q++R+ E + E+E+++  
Sbjct: 120 RDPQQQYEQCQKHCQ-RRETEPRHMQTCQQRCERRYEKEKRKQQKRYEEQQREDEEKYEE 178

Query: 82  R-HEWMNPGEPAEKHLRQCQRECDRQEEGGQQRALCRFRCQEKYRREKEGEGGQHNTQ-- 138
           R  E  N  +P ++    C+R C++QE   +Q+  C+ RC+E+ R+   G G   N Q  
Sbjct: 179 RMKEEDNKRDPQQREYEDCRRRCEQQE--PRQQHQCQLRCREQQRQHGRG-GDMMNPQRG 235

Query: 139 -----EEEEEEEGDEE--------SSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILI 185
                EE EEE+ D          S+R  ++ G ++ L  F  RSKLLR L+ YRL +L 
Sbjct: 236 GSGRYEEGEEEQSDNPYYFDERSLSTRFRTEEGHISVLENFYGRSKLLRALKNYRLVLLE 295

Query: 186 ANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245
           ANP  FV PTHLDADA+  V  G+G + +I  +NRESYN++ GD+IR+P+G TFY+ N D
Sbjct: 296 ANPNAFVLPTHLDADAILLVIGGRGALKMIHHDNRESYNLECGDVIRIPAGTTFYLINRD 355

Query: 246 DDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQ 305
           ++E+L+I KF+++I+ PGQY+ F+ AGG+NPE +L  FS EILE+A  T+ + L  V  Q
Sbjct: 356 NNERLHIAKFLQTISTPGQYKEFFPAGGQNPEPYLSTFSKEILEAALNTQTEKLRGVFGQ 415

Query: 306 QDQGAMVKASKQQIRALSRSQEGPSIWPF--AGE-SRGTFNLFGKRPSHSNNFGELFEAD 362
           Q +G +++AS++QIR L+R       W     GE SRG +NLF KRP +SN +G+ +E  
Sbjct: 416 QREGVIIRASQEQIRELTRDDSESRHWHIRRGGESSRGPYNLFNKRPLYSNKYGQAYEVK 475

Query: 363 SNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSER 422
             D+R L+D+D++V  AN+++G+M  PF+N+RSTKV VV +G+  +E+ACPH+S     R
Sbjct: 476 PEDYRQLQDMDLSVFIANVTQGSMMGPFFNTRSTKVVVVASGEADVEMACPHLSGRHGGR 535

Query: 423 RHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIR 482
                   EE    Y +V +R+    A +V AGHPVV V+S N NL +  F INA+ N  
Sbjct: 536 GGGKRHEEEE-DVHYEQVRARLSKREAIVVLAGHPVVFVSSGNENLLLFAFGINAQNNHE 594

Query: 483 FPLAGRNK-IFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSRWHQQQQGRA 538
             LAGR + + + +E +A ELAF     EVE  F +QDQ  FF GP R HQQQ  R+
Sbjct: 595 NFLAGRERNVLQQIEPQAMELAFAAPRKEVEESFNSQDQSIFFPGP-RQHQQQSPRS 650

Antimicrobial peptides 2b, 2c and 2d have antibacterial and antifungal activity against a range of species.
Macadamia integrifolia (taxid: 60698)

>sp|Q9SPL4|AMP22_MACIN Vicilin-like antimicrobial peptides 2-2 OS=Macadamia integrifolia GN=AMP2-2 PE=2 SV=1

 Score =  385 bits (990), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/538 (41%), Positives = 333/538 (61%), Gaps = 32/538 (5%)

Query: 26  KDPE--LKQCKHQCRARQQYDEKQKEQCARTCEEYY-KEK-EQRERHREGESEEEKEWGG 81
           +DP+   +QC+ +C+ R + + +  + C + CE  Y KEK +Q++R+ E + E+E+++  
Sbjct: 120 RDPQQQYEQCQERCQ-RHETEPRHMQTCQQRCERRYEKEKRKQQKRYEEQQREDEEKYEE 178

Query: 82  R-HEWMNPGEPAEKHLRQCQRECDRQEEGGQQRALCRFRCQEKYRREKEGEGGQH-NTQ- 138
           R  E  N  +P ++    C+R C++QE     R   + + + + ++ + G GG   N Q 
Sbjct: 179 RMKEEDNKRDPQQREYEDCRRRCEQQEP----RQQYQCQRRCREQQRQHGRGGDLINPQR 234

Query: 139 ------EEEEEEEGDEE--------SSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGIL 184
                 EE EE++ D          S+R  ++ G ++ L  F  RSKLLR L+ YRL +L
Sbjct: 235 GGSGRYEEGEEKQSDNPYYFDERSLSTRFRTEEGHISVLENFYGRSKLLRALKNYRLVLL 294

Query: 185 IANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNT 244
            ANP  FV PTHLDADA+  V+ G+G + +I  +NRESYN++ GD+IR+P+G TFY+ N 
Sbjct: 295 EANPNAFVLPTHLDADAILLVTGGRGALKMIHRDNRESYNLECGDVIRIPAGTTFYLINR 354

Query: 245 DDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLF 304
           D++E+L+I KF+++I+ PGQY+ F+ AGG+NPE +L  FS EILE+A  T+ + L  VL 
Sbjct: 355 DNNERLHIAKFLQTISTPGQYKEFFPAGGQNPEPYLSTFSKEILEAALNTQAERLRGVLG 414

Query: 305 QQDQGAMVKASKQQIRALSRSQEGPSIWPF--AGE-SRGTFNLFGKRPSHSNNFGELFEA 361
           QQ +G ++ AS++QIR L+R       W     GE SRG +NLF KRP +SN +G+ +E 
Sbjct: 415 QQREGVIISASQEQIRELTRDDSESRRWHIRRGGESSRGPYNLFNKRPLYSNKYGQAYEV 474

Query: 362 DSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSE 421
              D+R L+D+D++V  ANI++G+M  PF+N+RSTKV VV +G+  +E+ACPH+S     
Sbjct: 475 KPEDYRQLQDMDVSVFIANITQGSMMGPFFNTRSTKVVVVASGEADVEMACPHLSGRHGG 534

Query: 422 RRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNI 481
           RR       EE    Y +V +R+    A +VP GHPVV V+S N NL +  F INA+ N 
Sbjct: 535 RRGGKRHEEEE-DVHYEQVKARLSKREAIVVPVGHPVVFVSSGNENLLLFAFGINAQNNH 593

Query: 482 RFPLAGRNK-IFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSRWHQQQQGRA 538
              LAGR + + + +E +A ELAF     EVE +F +QD+  FF GP R HQQQ  R+
Sbjct: 594 ENFLAGRERNVLQQIEPQAMELAFAAPRKEVEELFNSQDESIFFPGP-RQHQQQSSRS 650

Antimicrobial peptides 2b, 2c and 2d have antibacterial and antifungal activity against a range of species.

Macadamia integrifolia (taxid: 60698)

>sp|Q9SPL3|AMP23_MACIN Vicilin-like antimicrobial peptides 2-3 (Fragment) OS=Macadamia integrifolia GN=AMP2-3 PE=1 SV=1

 Score =  378 bits (971), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 222/538 (41%), Positives = 334/538 (62%), Gaps = 32/538 (5%)

Query: 26  KDPE--LKQCKHQCRARQQYDEKQKEQCARTCEEYY-KEK-EQRERHREGESEEEKEWGG 81
           +DP+   +QC+ +C+ R++ + +  + C + CE  Y KEK +Q++R+ E + E+E+++  
Sbjct: 79  RDPQQQYEQCQKRCQ-RRETEPRHMQICQQRCERRYEKEKRKQQKRYEEQQREDEEKYEE 137

Query: 82  R-HEWMNPGEPAEKHLRQCQRECDRQEEGGQQRALCRFRCQEKYRREKEGEGGQ-HNTQ- 138
           R  E  N  +P ++    C+R C++QE     R   + + + + ++ + G GG   N Q 
Sbjct: 138 RMKEGDNKRDPQQREYEDCRRHCEQQEP----RLQYQCQRRCQEQQRQHGRGGDLMNPQR 193

Query: 139 ------EEEEEEEGDEE--------SSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGIL 184
                 EE EE++ D          S+R  ++ G ++ L  F  RSKLLR L+ YRL +L
Sbjct: 194 GGSGRYEEGEEKQSDNPYYFDERSLSTRFRTEEGHISVLENFYGRSKLLRALKNYRLVLL 253

Query: 185 IANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNT 244
            ANP  FV PTHLDADA+  V  G+G + +I  +NRESYN++ GD+IR+P+G TFY+ N 
Sbjct: 254 EANPNAFVLPTHLDADAILLVIGGRGALKMIHRDNRESYNLECGDVIRIPAGTTFYLINR 313

Query: 245 DDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLF 304
           D++E+L+I KF+++I+ PGQY+ F+ AGG+NPE +L  FS EILE+A  T+ + L  VL 
Sbjct: 314 DNNERLHIAKFLQTISTPGQYKEFFPAGGQNPEPYLSTFSKEILEAALNTQTERLRGVLG 373

Query: 305 QQDQGAMVKASKQQIRALSRSQEGPSIWPF--AGE-SRGTFNLFGKRPSHSNNFGELFEA 361
           QQ +G +++AS++QIR L+R       W     GE SRG +NLF KRP +SN +G+ +E 
Sbjct: 374 QQREGVIIRASQEQIRELTRDDSESRRWHIRRGGESSRGPYNLFNKRPLYSNKYGQAYEV 433

Query: 362 DSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSE 421
              D+R L+D+D++V  ANI++G+M  PF+N+RSTKV VV +G+  +E+ACPH+S     
Sbjct: 434 KPEDYRQLQDMDVSVFIANITQGSMMGPFFNTRSTKVVVVASGEADVEMACPHLS-GRHG 492

Query: 422 RRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNI 481
            R  G    EE    Y +V +R+    A +V AGHPVV V+S N NL +  F INA+ N 
Sbjct: 493 GRGGGKRHEEEEEVHYEQVRARLSKREAIVVLAGHPVVFVSSGNENLLLFAFGINAQNNH 552

Query: 482 RFPLAGRNK-IFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSRWHQQQQGRA 538
              LAGR + + + +E +A ELAF     EVE +F +QD+  FF GP R HQQQ  R+
Sbjct: 553 ENFLAGRERNVLQQIEPQAMELAFAASRKEVEELFNSQDESIFFPGP-RQHQQQSPRS 609

Antimicrobial peptides 2b, 2c and 2d have antibacterial and antifungal activity against a range of species.

Macadamia integrifolia (taxid: 60698)

>sp|P15590|GLB1_MAIZE Globulin-1 S allele OS=Zea mays GN=GLB1 PE=1 SV=2

 Score =  318 bits (815), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 160/392 (40%), Positives = 246/392 (62%), Gaps = 21/392 (5%)

Query: 156 QHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVI 215
           + G +  L  F + S+LLRG+  YR+ +L ANP++FV P+H DA  + +V+ G+G +T I
Sbjct: 118 EQGSLRVLRPFDEVSRLLRGIRDYRVAVLEANPRSFVVPSHTDAHCIGYVAEGEGVVTTI 177

Query: 216 RENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGEN 275
               R SY +K+G +   P+G   Y+ NTD  +KL I K + +I++PG+++ F+G GG N
Sbjct: 178 ENGERRSYTIKQGHVFVAPAGAVTYLANTDGRKKLVITKILHTISVPGEFQFFFGPGGRN 237

Query: 276 PESFLRAFSWEILESAFKTKRDSLERVLFQ--QDQGAMVKASKQQIRALSRSQ----EGP 329
           PESFL +FS  I  +A+KT  D LER+  +  QD+G +V+A+++Q R L R       GP
Sbjct: 238 PESFLSSFSKSIQRAAYKTSSDRLERLFGRHGQDKGIIVRATEEQTRELRRHASEGGHGP 297

Query: 330 SIWPFA--GESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMA 387
             WP    GESRG ++L  +RPS +N  G+L+EAD+  F  L + D++VS+ANI+ G+M+
Sbjct: 298 H-WPLPPFGESRGPYSLLDQRPSIANQHGQLYEADARSFHDLAEHDVSVSFANITAGSMS 356

Query: 388 APFYNSRSTKVAVVVAGDGYIEIACPH-VSRSSSERRHQGSSTREEGSAT---------- 436
           AP YN+RS K+A V  G GY EI CPH  S+     R +G   R E              
Sbjct: 357 APLYNTRSFKIAYVPNGKGYAEIVCPHRQSQGGESERERGKGRRSEEEEESSEEQEEVGQ 416

Query: 437 -YHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVM 495
            YH + +R+   +A++VPAGHP V VAS+++NL++VCFE++A+ N +  LAG + + + +
Sbjct: 417 GYHTIRARLSPGTAFVVPAGHPFVAVASRDSNLQIVCFEVHADRNEKVFLAGADNVLQKL 476

Query: 496 ESEAKELAFNTRADEVERVFGNQDQDWFFKGP 527
           +  AK L+F ++A+EV+ V G++ +  F  GP
Sbjct: 477 DRVAKALSFASKAEEVDEVLGSRREKGFLPGP 508

Zea mays (taxid: 4577)

>sp|Q04672|SBP_SOYBN Sucrose-binding protein OS=Glycine max GN=SBP PE=1 SV=1

 Score =  306 bits (783), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 151/377 (40%), Positives = 249/377 (66%), Gaps = 12/377 (3%)

Query: 143 EEEGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAV 202
           EE+ D E+ RV ++ GR+  L KFT++SKLL+G+E +RL IL A   TFV+P H D++ V
Sbjct: 113 EEDKDFET-RVETEGGRIRVLKKFTEKSKLLQGIENFRLAILEARAHTFVSPRHFDSEVV 171

Query: 203 FFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYI--VKFIKSIN 260
           FF   G+  + ++ E+  E   ++ GD+I +P+G   Y+ N D+++KL++  +    S++
Sbjct: 172 FFNIKGRAVLGLVSESETEKITLEPGDMIHIPAGTPLYIVNRDENDKLFLAMLHIPVSVS 231

Query: 261 LPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIR 320
            PG++E F+  GG +PES L AFSW +L++A +T +  LE V  QQ++G++ + S++Q+R
Sbjct: 232 TPGKFEEFFAPGGRDPESVLSAFSWNVLQAALQTPKGKLENVFDQQNEGSIFRISREQVR 291

Query: 321 ALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRP--LEDLDITVSY 378
           AL+ +++  S WPF GES+  FN+F KRP+ SN +G L E   +D     L+ L++ +++
Sbjct: 292 ALAPTKKS-SWWPFGGESKPQFNIFSKRPTISNGYGRLTEVGPDDDEKSWLQRLNLMLTF 350

Query: 379 ANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYH 438
            NI++ +M+   YNS +TK+A+V+ G G+++I+CPH+S  SS       S  ++ S +YH
Sbjct: 351 TNITQRSMSTIHYNSHATKIALVIDGRGHLQISCPHMSSRSS------HSKHDKSSPSYH 404

Query: 439 KVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESE 498
           ++SS ++    ++VP GHP VT+AS   NL ++CFE+NA  N +F  AG++ I   +++ 
Sbjct: 405 RISSDLKPGMVFVVPPGHPFVTIASNKENLLMICFEVNARDNKKFTFAGKDNIVSSLDNV 464

Query: 499 AKELAFNTRADEVERVF 515
           AKELAFN  ++ V  VF
Sbjct: 465 AKELAFNYPSEMVNGVF 481

Plays a role in sucrose transport.

Glycine max (taxid: 3847)

>sp|P09799|VCLA_GOSHI Vicilin GC72-A OS=Gossypium hirsutum PE=3 SV=1

 Score =  287 bits (734), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 196/572 (34%), Positives = 310/572 (54%), Gaps = 58/572 (10%)

Query: 5   LCFTLFTLSVLVLCAGLALATK----DPELKQCKHQCRARQQYDEK---QKEQCARTCEE 57
           L F+LF LS  +LC+      +    DP+  Q    CR R Q + +   ++++C    E 
Sbjct: 11  LLFSLF-LSFGLLCSAKDFPGRRSEDDPQ--QRYEDCRKRCQLETRGQTEQDKCEDRSET 67

Query: 58  YYKEKEQRERH---------REGESEEEK------EWGGRHEW-MNPGEPAEKHLRQCQR 101
             KE++QR+           R+   +EE+      E   R ++     +  +K  ++CQ+
Sbjct: 68  QLKEEQQRDGEDPQRRYQDCRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKECQQ 127

Query: 102 ECDRQEEGGQQRALCRFRCQEKYRREK-EGEGGQHNTQEEEEEEEGDEESSR-------- 152
            C  QE+  +++  C   C+E+Y+ +  +GE      +EEEEE +  E+  R        
Sbjct: 128 RCQWQEQRPERKQQCVKECREQYQEDPWKGERENKWREEEEEESDEGEQQQRNNPYYFHR 187

Query: 153 ------VTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVS 206
                    +HG    L +F  +  LLRG+ ++R+ IL ANP TFV P H DA+ ++ V+
Sbjct: 188 RSFQERFREEHGNFRVLQRFADKHHLLRGINEFRIAILEANPNTFVLPHHCDAEKIYVVT 247

Query: 207 WGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYE 266
            G+GT+T +   N+ESYNV  G ++R+P+G+T Y+ N D+ EKL I    + +N PGQ++
Sbjct: 248 NGRGTVTFVTHENKESYNVVPGVVVRIPAGSTVYLANQDNREKLTIAVLHRPVNNPGQFQ 307

Query: 267 AFYGAGGENPESFLRAFSWEILESAFKTKRDSLERV-------LFQQDQGAMVKASKQQI 319
            F+ AG ENP+S+LR FS EILE+ F T+ + L+ +         QQ QG   KAS++QI
Sbjct: 308 KFFPAGQENPQSYLRIFSREILEAVFNTRSEQLDELPGGRQSHRRQQGQGMFRKASQEQI 367

Query: 320 RALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDF-RPLEDLDITVSY 378
           RALS+    P      G     FNL  + P +SN  G  +EA   +F + L ++D +V  
Sbjct: 368 RALSQGATSPRG---KGSEGYAFNLLSQTPRYSNQNGRFYEACPRNFQQQLREVDSSVVA 424

Query: 379 ANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSE-----RRHQGSSTREEG 433
             I+KG++  P YNS++T V +V  G+G++E+ CPH+SR SS+        Q     E  
Sbjct: 425 FEINKGSIFVPHYNSKATFVVLVTEGNGHVEMVCPHLSRQSSDWSSREEEEQEEQEVERR 484

Query: 434 SATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEI-NAEGNIRFPLAGRNKIF 492
           S  Y +V +++ T + ++VPAGHPV  VASQN +L ++ F + N + N R  +AG+    
Sbjct: 485 SGQYKRVRAQLSTGNLFVVPAGHPVTFVASQNEDLGLLGFGLYNGQDNKRIFVAGKTNNV 544

Query: 493 KVMESEAKELAFNTRADEVERVFGNQDQDWFF 524
           +  + +AKELAF   +  V+ VF N  Q+ +F
Sbjct: 545 RQWDRQAKELAFGVESRLVDEVFNNNPQESYF 576

Seed storage protein.

Gossypium hirsutum (taxid: 3635)

>sp|P09801|VCLB_GOSHI Vicilin C72 OS=Gossypium hirsutum PE=2 SV=1

 Score =  286 bits (732), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 207/591 (35%), Positives = 309/591 (52%), Gaps = 94/591 (15%)

Query: 5   LCFTLFTLSVLVLCAGLALATK--DPELKQCKHQCRARQQYD---EKQKEQCARTCEEYY 59
           L F+LF LS  +LC+      +  D +  +    CR R ++D   +K+++QC  +C+  Y
Sbjct: 11  LLFSLF-LSFGLLCSAKDFPGRRGDDDPPKRYEDCRRRCEWDTRGQKEQQQCEESCKSQY 69

Query: 60  KEKEQRERHREGESEEEKEWGGRHEWMNPGEPAEKHLRQCQRECDRQEE----GGQQRAL 115
            EK+Q++RHR                  P +P  ++  +CQ+EC +QEE      QQR L
Sbjct: 70  GEKDQQQRHR------------------PEDPQRRY-EECQQECRQQEERQRPQCQQRCL 110

Query: 116 ---------------------------------CRFRCQEKYRREKEGEGGQHNTQEEEE 142
                                            C   C+E+Y+        +   +EEE 
Sbjct: 111 KRFEQEQQQSQRQFQECQQHCHQQEQRPERKQQCVRECRERYQENPWRREREEEAEEEET 170

Query: 143 EEEGDEES------------SRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQT 190
           EE   E+S            SR   +HG    L +F  R  +LRG+ ++RL IL ANP T
Sbjct: 171 EEGEQEQSHNPFHFHRRSFQSRFREEHGNFRVLQRFASRHPILRGINEFRLSILEANPNT 230

Query: 191 FVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKL 250
           FV P H DA+ ++ V+ G+GT+T +   N+ESYNV  G ++RVP+G+T Y+ N D+ EKL
Sbjct: 231 FVLPHHCDAEKIYLVTNGRGTLTFLTHENKESYNVVPGVVVRVPAGSTVYLANQDNKEKL 290

Query: 251 YIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVL------- 303
            I    + +N P Q+E F+ AG + P+S+LRAFS EILE AF T+ + L+ +        
Sbjct: 291 IIAVLHRPVNNPRQFEEFFPAGSQRPQSYLRAFSREILEPAFNTRSEQLDELFGGRQSHR 350

Query: 304 FQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADS 363
            QQ QG   KAS++QIRAL  SQE  S    +GE R  FNL  + P +SN  G  +EA  
Sbjct: 351 RQQGQGMFRKASQEQIRAL--SQEATSPREKSGE-RFAFNLLYRTPRYSNQNGRFYEACP 407

Query: 364 NDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSS--- 420
            +FR L D+++TVS   +++G++  P YNS++T V +V  G+GY+E+  PH+ R SS   
Sbjct: 408 REFRQLSDINVTVSALQLNQGSIFVPHYNSKATFVVLVNEGNGYVEMVSPHLPRQSSFEE 467

Query: 421 --ERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF----- 473
             E++ +     E  S  Y K+ S++     ++VPA  PV  VASQN NL +  F     
Sbjct: 468 EEEQQQEQEQEEERRSGQYRKIRSQLSRGDIFVVPANFPVTFVASQNQNLRMTGFGLYNQ 527

Query: 474 EINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFF 524
            IN + N R  +AG+    +  +S+AKELAF   +  V+ +F N  Q+ +F
Sbjct: 528 NINPDHNQRIFVAGKINHVRQWDSQAKELAFGVSSRLVDEIFNNNPQESYF 578

Seed storage protein.

Gossypium hirsutum (taxid: 3635)

>sp|Q43358|VCL_THECC Vicilin OS=Theobroma cacao GN=CSV PE=2 SV=1

 Score =  263 bits (672), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 149/399 (37%), Positives = 222/399 (55%), Gaps = 32/399 (8%)

Query: 119 RCQEKYRREKEGEGGQHNTQEEE--EEEEGDEES------------SRVTSQHGRVAFLP 164
           +C E+Y+ ++ GE   ++  ++   EEEEG + +            +R   + G    L 
Sbjct: 108 KCWEQYKEQERGEHENYHNHKKNRSEEEEGQQRNNPYYFPKRRSFQTRFRDEEGNFKILQ 167

Query: 165 KFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYN 224
           +F + S  L+G+  YRL +  ANP TF+ P H DA+A++FV+ G+GTIT +   N+ESYN
Sbjct: 168 RFAENSPPLKGINDYRLAMFEANPNTFILPHHCDAEAIYFVTNGKGTITFVTHENKESYN 227

Query: 225 VKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFS 284
           V+RG ++ VP+G+T YV + D+ EKL I      +N PG+YE F+ AG   PES+  AFS
Sbjct: 228 VQRGTVVSVPAGSTVYVVSQDNQEKLTIAVLALPVNSPGKYELFFPAGNNKPESYYGAFS 287

Query: 285 WEILESAFKTKRDSLERVL--------FQQDQGAMVKASKQQIRALSRSQEGPSIWPFAG 336
           +E+LE+ F T+R+ LE +L         Q  QG   KA  +QIRA+S+    P      G
Sbjct: 288 YEVLETVFNTQREKLEEILEEQRGQKRQQGQQGMFRKAKPEQIRAISQQATSPR---HRG 344

Query: 337 ESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRST 396
             R   NL  + P +SN  G  FEA   DF   +++D+ VS   +++GA+  P YNS++T
Sbjct: 345 GERLAINLLSQSPVYSNQNGRFFEACPEDFSQFQNMDVAVSAFKLNQGAIFVPHYNSKAT 404

Query: 397 KVAVVVAGDGYIEIACPHVSRSS-------SERRHQGSSTREEGSATYHKVSSRIRTDSA 449
            V  V  G GY ++ACPH+SR S        +RR Q   + EE    + +V + +     
Sbjct: 405 FVVFVTDGYGYAQMACPHLSRQSQGSQSGRQDRREQEEESEEETFGEFQQVKAPLSPGDV 464

Query: 450 YIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGR 488
           ++ PAGH V   AS++  L  V F +NA+ N R  LAGR
Sbjct: 465 FVAPAGHAVTFFASKDQPLNAVAFGLNAQNNQRIFLAGR 503

Theobroma cacao (taxid: 3641)

>sp|P13915|CVCA_PEA Convicilin OS=Pisum sativum GN=CVCA PE=1 SV=1

 Score =  229 bits (584), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 139/389 (35%), Positives = 207/389 (53%), Gaps = 32/389 (8%)

Query: 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITV 214
           +++G +  L +F +RS L   L+ YRL    A P T   P H+DAD +  V  G+  +TV
Sbjct: 168 NENGHIRRLQRFDKRSDLFENLQNYRLVEYRAKPHTIFLPQHIDADLILVVLNGKAILTV 227

Query: 215 IRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGE 274
           +  N+R SYN++RGD I++P+G T Y+ N DD+E L +V F+  +N PG++EAF     E
Sbjct: 228 LSPNDRNSYNLERGDTIKIPAGTTSYLVNQDDEEDLRVVDFVIPVNRPGKFEAF--GLSE 285

Query: 275 NPESFLRAFSWEILESAFKTKRDSLERVLFQ------------------QDQGAMVKASK 316
           N   +LR FS  ILE++  TK +++E+VL +                  +++ A++K S+
Sbjct: 286 NKNQYLRGFSKNILEASLNTKYETIEKVLLEEQEKKPQQLRDRKRTQQGEERDAIIKVSR 345

Query: 317 QQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRP-LEDLDIT 375
           +QI  L +  +  S      E    FNL   +P +SN FG+LFE       P L+DLDI 
Sbjct: 346 EQIEELRKLAKSSSKKSLPSEFE-PFNLRSHKPEYSNKFGKLFEITPEKKYPQLQDLDIL 404

Query: 376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSA 435
           VS   I+KGA+  P YNSR+  V +V  G G +E+          +   Q    R+E + 
Sbjct: 405 VSCVEINKGALMLPHYNSRAIVVLLVNEGKGNLELL-------GLKNEQQEREDRKERNN 457

Query: 436 TYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGR-NKIFKV 494
              +  +R+      I+PAGHPV   AS N NL  + F INA+ N R  L+G  + +   
Sbjct: 458 EVQRYEARLSPGDVVIIPAGHPVAISASSNLNL--LGFGINAKNNQRNFLSGSDDNVISQ 515

Query: 495 MESEAKELAFNTRADEVERVFGNQDQDWF 523
           +E+  KEL F   + EV R+  NQ Q  F
Sbjct: 516 IENPVKELTFPGSSQEVNRLIKNQKQSHF 544

Seed storage protein.

Pisum sativum (taxid: 3888)

>sp|P13916|GLCA_SOYBN Beta-conglycinin, alpha chain OS=Glycine max PE=2 SV=2

 Score =  219 bits (559), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 127/396 (32%), Positives = 216/396 (54%), Gaps = 24/396 (6%)

Query: 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITV 214
           +Q+GR+  L +F QRS  L+ L  YR+    + P T + P H DAD +  +  G   +++
Sbjct: 209 NQYGRIRVLQRFNQRSPQLQNLRDYRILEFNSKPNTLLLPNHADADYLIVILNGTAILSL 268

Query: 215 IRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGE 274
           +  ++R+SY ++ GD +RVPSG T+YV N D++E L ++     +N PG++E+F+ +  E
Sbjct: 269 VNNDDRDSYRLQSGDALRVPSGTTYYVVNPDNNENLRLITLAIPVNKPGRFESFFLSSTE 328

Query: 275 NPESFLRAFSWEILESAFKTKRDSLERVLFQQDQG-----------AMVKASKQQIRALS 323
             +S+L+ FS  ILE+++ TK + + +VLF +++G            +V+ SK+QIRALS
Sbjct: 329 AQQSYLQGFSRNILEASYDTKFEEINKVLFSREEGQQQGEQRLQESVIVEISKEQIRALS 388

Query: 324 RSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISK 383
           +  +  S    + E +  FNL  + P +SN  G+ FE        L DLDI +S  ++++
Sbjct: 389 KRAKSSSRKTISSEDK-PFNLRSRDPIYSNKLGKFFEITPEKNPQLRDLDIFLSIVDMNE 447

Query: 384 GAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSR 443
           GA+  P +NS++  + V+  GD  IE+      +   ++  Q    R        K  + 
Sbjct: 448 GALLLPHFNSKAIVILVINEGDANIELVGLKEQQQEQQQEEQPLEVR--------KYRAE 499

Query: 444 IRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKEL 502
           +     +++PAG+PVV  A+  +NL      INAE N R  LAG ++ +   + S+ +EL
Sbjct: 500 LSEQDIFVIPAGYPVVVNAT--SNLNFFAIGINAENNQRNFLAGSQDNVISQIPSQVQEL 557

Query: 503 AFNTRADEVERVFGNQDQDWFFKG-PSRWHQQQQGR 537
           AF   A  VE++  NQ + +F    P +  +  +GR
Sbjct: 558 AFPGSAQAVEKLLKNQRESYFVDAQPKKKEEGNKGR 593

Seed storage protein. Accumulates during seed development and is hydrolyzed after germination to provide a carbon and nitrogen source for the developing seedling.

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	540
21914823	538	vicilin-like protein [Anacardium occiden	0.955	0.959	0.572	1e-179
21666498	536	vicilin-like protein [Anacardium occiden	0.955	0.962	0.570	1e-179
133711974	519	vicilin [Pistacia vera]	0.927	0.965	0.598	1e-178
255567546	560	nucleolar protein nop56, putative [Ricin	0.944	0.910	0.516	1e-141
19338630	448	48-kDa glycoprotein precursor [Corylus a	0.811	0.977	0.505	1e-131
13183177	585	7S globulin [Sesamum indicum]	0.887	0.818	0.48	1e-127
296085227	1361	unnamed protein product [Vitis vinifera]	0.912	0.362	0.453	1e-120
359479703	520	PREDICTED: vicilin-like antimicrobial pe	0.912	0.948	0.453	1e-120
359479651	562	PREDICTED: vicilin-like antimicrobial pe	0.925	0.889	0.421	1e-114
75207036	666	RecName: Full=Vicilin-like antimicrobial	0.938	0.761	0.418	1e-108

>gi|21914823|gb|AAM73730.2|AF395894_1 vicilin-like protein [Anacardium occidentale]

 Score =  635 bits (1639), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 317/554 (57%), Positives = 415/554 (74%), Gaps = 38/554 (6%)

Query: 4   KLCFTLFTLSVLVLCAGLALATKDPELKQCKHQCRARQQYDEKQKEQCARTCEEYYKEKE 63
           K  F+LF +SVLVLC G ALA  DPELKQCKHQC+ ++QYDE+QKEQC + CE+YYKEK+
Sbjct: 6   KFSFSLFLVSVLVLCLGFALAKIDPELKQCKHQCKVQRQYDEQQKEQCVKECEKYYKEKK 65

Query: 64  QRERHREGESEEEKEWG-GRHEWMNPGEPAEKHLRQCQRECDRQEEGGQQRALCRFRCQE 122
            RER      EEE+EWG G  +  +  EPAEKHL QC R+C+RQE GGQQ+ LCRFRCQE
Sbjct: 66  GREREH---EEEEEEWGTGGVDEPSTHEPAEKHLSQCMRQCERQE-GGQQKQLCRFRCQE 121

Query: 123 KYRREKEGEGGQHNTQEEEEEE----------------EGDEESSRVTSQHGRVAFLPKF 166
           +Y++E+    GQHN + E++E+                E ++ +++V ++ G+V  LPKF
Sbjct: 122 RYKKER----GQHNYKREDDEDEDEDEAEEEDENPYVFEDEDFTTKVKTEQGKVVLLPKF 177

Query: 167 TQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVK 226
           TQ+SKLL  LEKYRL +L+ANPQ FV P+H+DAD++FFVSWG+GTIT I EN RES NV+
Sbjct: 178 TQKSKLLHALEKYRLAVLVANPQAFVVPSHMDADSIFFVSWGRGTITKILENKRESINVR 237

Query: 227 RGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWE 286
           +GDI+ + SG  FY+ N D++EKLY+V+F++ +NLPG +E F+G GGENPESF RAFSWE
Sbjct: 238 QGDIVSISSGTPFYIANNDENEKLYLVQFLRPVNLPGHFEVFHGPGGENPESFYRAFSWE 297

Query: 287 ILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLFG 346
           ILE+A KT +D+LE++  +QDQG ++KASK+QIRA+SR  EGP IWPF  ES G+F LF 
Sbjct: 298 ILEAALKTSKDTLEKLFEKQDQGTIMKASKEQIRAMSRRGEGPKIWPFTEESTGSFKLFK 357

Query: 347 KRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDG 406
           K PS SN +G+LFEA+  D+ PLE LD+ VSYANI+KG M+ PFYNSR+TK+A+VV+G+G
Sbjct: 358 KDPSQSNKYGQLFEAERIDYPPLEKLDMVVSYANITKGGMSVPFYNSRATKIAIVVSGEG 417

Query: 407 YIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNN 466
            +EIACPH+S S S               +Y K+ +RIR D+ +IVPAGHP  TVAS N 
Sbjct: 418 CVEIACPHLSSSKSS------------HPSYKKLRARIRKDTVFIVPAGHPFATVASGNE 465

Query: 467 NLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKG 526
           NLE+VCFE+NAEGNIR+ LAG+  I KVME EAKELAF    +EV++VFG QD+++FF+G
Sbjct: 466 NLEIVCFEVNAEGNIRYTLAGKKNIIKVMEKEAKELAFKMEGEEVDKVFGKQDEEFFFQG 525

Query: 527 PSRWHQQQQGRAYE 540
           P  W ++++GRA E
Sbjct: 526 PE-WRKEKEGRADE 538

Source: Anacardium occidentale

Species: Anacardium occidentale

Genus: Anacardium

Family: Anacardiaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21666498|gb|AAM73729.1|AF395893_1 vicilin-like protein [Anacardium occidentale]

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 316/554 (57%), Positives = 415/554 (74%), Gaps = 38/554 (6%)

Query: 4   KLCFTLFTLSVLVLCAGLALATKDPELKQCKHQCRARQQYDEKQKEQCARTCEEYYKEKE 63
           K  F+LF +SVLVLC G ALA  DPELKQCKHQC+ ++QYDE+QKEQC + CE+YYKEK+
Sbjct: 4   KFSFSLFLVSVLVLCLGFALAKIDPELKQCKHQCKVQRQYDEQQKEQCVKECEKYYKEKK 63

Query: 64  QRERHREGESEEEKEWG-GRHEWMNPGEPAEKHLRQCQRECDRQEEGGQQRALCRFRCQE 122
            RER      EEE+EWG G  +  +  EPAEKHL QC R+C+RQE GGQQ+ LCRFRCQE
Sbjct: 64  GREREH---EEEEEEWGTGGVDEPSTHEPAEKHLSQCMRQCERQE-GGQQKQLCRFRCQE 119

Query: 123 KYRREKEGEGGQHNTQEEEEEE----------------EGDEESSRVTSQHGRVAFLPKF 166
           +Y++E+    GQHN + E++E+                E ++ +++V ++ G+V  LPKF
Sbjct: 120 RYKKER----GQHNYKREDDEDEDEDEAEEEDENPYVFEDEDFTTKVKTEQGKVVLLPKF 175

Query: 167 TQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVK 226
           TQ+SKLL  LEKYRL +L+ANPQ FV P+H+DAD++FFVSWG+GTIT I EN RES NV+
Sbjct: 176 TQKSKLLHALEKYRLAVLVANPQAFVVPSHMDADSIFFVSWGRGTITKILENKRESINVR 235

Query: 227 RGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWE 286
           +GDI+ + SG  FY+ N D++EKLY+V+F++ +NLPG +E F+G GGENPESF RAFSWE
Sbjct: 236 QGDIVSISSGTPFYIANNDENEKLYLVQFLRPVNLPGHFEVFHGPGGENPESFYRAFSWE 295

Query: 287 ILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLFG 346
           ILE+A KT +D+LE++  +QDQG ++KASK+Q+RA+SR  EGP IWPF  ES G+F LF 
Sbjct: 296 ILEAALKTSKDTLEKLFEKQDQGTIMKASKEQVRAMSRRGEGPKIWPFTEESTGSFKLFK 355

Query: 347 KRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDG 406
           K PS SN +G+LFEA+  D+ PLE LD+ VSYANI+KG M+ PFYNSR+TK+A+VV+G+G
Sbjct: 356 KDPSQSNKYGQLFEAERIDYPPLEKLDMVVSYANITKGGMSVPFYNSRATKIAIVVSGEG 415

Query: 407 YIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNN 466
            +EIACPH+S S S               +Y K+ +RIR D+ +IVPAGHP  TVAS N 
Sbjct: 416 CVEIACPHLSSSKSS------------HPSYKKLRARIRKDTVFIVPAGHPFATVASGNE 463

Query: 467 NLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKG 526
           NLE+VCFE+NAEGNIR+ LAG+  I KVME EAKELAF    +EV++VFG QD+++FF+G
Sbjct: 464 NLEIVCFEVNAEGNIRYTLAGKKNIIKVMEKEAKELAFKMEGEEVDKVFGKQDEEFFFQG 523

Query: 527 PSRWHQQQQGRAYE 540
           P  W ++++GRA E
Sbjct: 524 PE-WRKEKEGRADE 536

Source: Anacardium occidentale

Species: Anacardium occidentale

Genus: Anacardium

Family: Anacardiaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|133711974|gb|ABO36677.1| vicilin [Pistacia vera]

 Score =  632 bits (1631), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 317/530 (59%), Positives = 409/530 (77%), Gaps = 29/530 (5%)

Query: 27  DPELKQCKHQCRARQQYDEKQKEQCARTCEEYYKEKEQRERHREGESEEEKEWG---GRH 83
           DPELKQCKHQC+ ++QYDE+QKEQCA+ CE+YYKEK+ RE+    E EEE+EWG   GR 
Sbjct: 3   DPELKQCKHQCKVQRQYDEEQKEQCAKGCEKYYKEKKGREQ----EEEEEEEWGSGRGRG 58

Query: 84  EWMNPGEPAEKHLRQCQRECDRQEEGGQQRALCRFRCQEKYRREKEGEGGQHNTQEEEEE 143
           +  +  EP EK L QC ++C+RQ+ GGQQ+ LCRFRCQEKY++E+       + +EEEE 
Sbjct: 59  DEFSTHEPGEKRLSQCMKQCERQD-GGQQKQLCRFRCQEKYKKERREHSYSRDEEEEEEG 117

Query: 144 E-------------EGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQT 190
           +             E +  ++RV ++ G+V  LPKFT+RSKLLRGLEKYRL  L+ANPQ 
Sbjct: 118 DEEQEEEDENPYVFEDEHFTTRVKTEQGKVVVLPKFTKRSKLLRGLEKYRLAFLVANPQA 177

Query: 191 FVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKL 250
           FV P H+DAD++FFVSWG+GTIT IREN RES NVK+GDIIR+ +G  FY+ NTD++EKL
Sbjct: 178 FVVPNHMDADSIFFVSWGRGTITKIRENKRESMNVKQGDIIRIRAGTPFYIVNTDENEKL 237

Query: 251 YIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGA 310
           YIVK ++ +NLPG YE F+G GGENPESF RAFS E+LE+A KT RD LE++  +QD+GA
Sbjct: 238 YIVKLLQPVNLPGHYEVFHGPGGENPESFYRAFSREVLEAALKTPRDKLEKLFEKQDEGA 297

Query: 311 MVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLE 370
           +VKASK+QIRA+SR  EGPSIWPF G+S GTFNLF K PS SNN+G+LFE++  D+ PL+
Sbjct: 298 IVKASKEQIRAMSRRGEGPSIWPFTGKSTGTFNLFKKDPSQSNNYGQLFESEFKDYPPLQ 357

Query: 371 DLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTR 430
           +LDI VSY NI+KG M+ PFYNSR+TK+A+VV+G+G +EIACPH+S S        +S +
Sbjct: 358 ELDIMVSYVNITKGGMSGPFYNSRATKIAIVVSGEGRLEIACPHLSSSK-------NSGQ 410

Query: 431 EEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNK 490
           E+   +Y K+SS IRTDS ++VPAGHP VTVAS N NLE++CFE+NAEGNIR+ LAG+  
Sbjct: 411 EKSGPSYKKLSSSIRTDSVFVVPAGHPFVTVASGNQNLEILCFEVNAEGNIRYTLAGKKN 470

Query: 491 IFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSRWHQQQQGRAYE 540
           I +VME EAKELAF T+ +EV++VFG QD+++FF+GP +W Q QQGRA E
Sbjct: 471 IIEVMEKEAKELAFKTKGEEVDKVFGKQDEEFFFQGP-KWRQHQQGRADE 519

Source: Pistacia vera

Species: Pistacia vera

Genus: Pistacia

Family: Anacardiaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567546|ref|XP_002524752.1| nucleolar protein nop56, putative [Ricinus communis] gi|223535936|gb|EEF37595.1| nucleolar protein nop56, putative [Ricinus communis]

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 294/569 (51%), Positives = 379/569 (66%), Gaps = 59/569 (10%)

Query: 11  TLSVLVLCAG-LALATKDPELKQCKHQCRARQQYDEKQKEQCARTCEEYYKEKEQRERHR 69
            L V VL  G LA AT DPELKQCKHQC+ ++QY E QK QC R CEEYY+EKE+    R
Sbjct: 8   VLFVFVLFTGTLAQATTDPELKQCKHQCKVQRQYGEDQKRQCMRRCEEYYREKERERERR 67

Query: 70  EGESEE-------------EKEWGGRHEWMNPGEPAEKHLRQCQRECDRQEEGGQQRALC 116
           EGE E              E +W      ++     EK LR+CQR+C+RQE  GQQR LC
Sbjct: 68  EGEGEGEGEGGGRGSGHREEDDWD-----VSSTTDPEKRLRECQRQCERQE--GQQRTLC 120

Query: 117 RFRCQEKYRREKEGEGGQHNTQEEEEEE-----------------------EGDEESSRV 153
           R RCQE Y RE+E E      + E   E                       + D+ + +V
Sbjct: 121 RRRCQESYEREREREEEGGRGEREHGREKGGGRGGKEEETNEEAEENPYVFDTDQFTEKV 180

Query: 154 TSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTIT 213
            ++HG ++ LP+FT++SKLLRG+E YR+GIL ANPQTFV P+H DADAV  V+ G+GT+T
Sbjct: 181 RTEHGSISVLPRFTKKSKLLRGIENYRVGILKANPQTFVAPSHWDADAVLVVAKGRGTVT 240

Query: 214 VIRENN-RESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAG 272
           +I E   + S+N++ GD++RV +G   YV N DD+EKLYI+ FI+ +NLPG++EAF  AG
Sbjct: 241 LIHEEGEKRSFNIEVGDVMRVRAGTPVYVINRDDNEKLYIINFIQPVNLPGEFEAFRAAG 300

Query: 273 GENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALS-RSQEGPSI 331
           G   ESF  AFSWE+LE+AFKT R  +E+ L  Q Q A+VKASK+QI+A++ R QEG +I
Sbjct: 301 GREDESFYNAFSWELLEAAFKTDRRRIEQ-LITQKQEAIVKASKEQIQAMTHRDQEGGTI 359

Query: 332 WPFAGESRGT-FNLFGKRPSHSNNFGELFEADSNDFR-PLEDLDITVSYANISKGAMAAP 389
           WPF GES G  FNL  KRP  SNN G+LFEA  ND +  L+DLD+ +S+ANI++G+MA P
Sbjct: 360 WPFGGESSGAPFNLLHKRPVQSNNHGQLFEARPNDHKEQLQDLDLMISFANITRGSMAGP 419

Query: 390 FYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSA 449
            YNSR+TK+A+V  G+GY+E+ACPH+S  S    HQG         TY +V SR+R  + 
Sbjct: 420 LYNSRATKIAIVTQGEGYMEMACPHLSGGSE---HQGRK-----GQTYGRVRSRLRPGTV 471

Query: 450 YIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRAD 509
           +IVPAGHPV TVAS NNNL V+CFE+NA+GNIR+ LAGRN I +  E EAKELAF  RA 
Sbjct: 472 FIVPAGHPVATVASPNNNLAVLCFEVNAQGNIRYTLAGRNNIVRRWEREAKELAFGVRAR 531

Query: 510 EVERVFGNQDQDWFFKGPSRWHQQQQGRA 538
           EV+ VF +Q++ +FF GP R  Q+ QGRA
Sbjct: 532 EVDEVFESQNEVFFFPGPRR--QEWQGRA 558

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19338630|gb|AAL86739.1|AF441864_1 48-kDa glycoprotein precursor [Corylus avellana]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/465 (50%), Positives = 325/465 (69%), Gaps = 27/465 (5%)

Query: 86  MNPGEPAEKHLRQCQREC-DRQEEGGQQRALCRFRCQEKYRREKEGEGGQHNTQEEEEEE 144
           M P E  E  L++C+ +C D ++   QQR   +  C+EK R  ++ EG        +E+E
Sbjct: 1   MLPKEDPE--LKKCKHKCRDERQFDEQQRRDGKQICEEKARERQQEEGNSSEESYGKEQE 58

Query: 145 EG-----DEE-SSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLD 198
           E      DE   SRV ++ GRV  L  FT+RS+LL G+E +RL IL ANP TF++P H D
Sbjct: 59  ENPYVFQDEHFESRVKTEEGRVQVLENFTKRSRLLSGIENFRLAILEANPHTFISPAHFD 118

Query: 199 ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKS 258
           A+ V FV+ G+ TIT++RE  RES+NV+ GDIIR+P+G   Y+ N D++EKL+IVK ++ 
Sbjct: 119 AELVLFVAKGRATITMVREEKRESFNVEHGDIIRIPAGTPVYMINRDENEKLFIVKILQP 178

Query: 259 INLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQ 318
           ++ PG +EAFYGAGGE+PESF RAFSWE+LE+A K +R+ LE+V  +Q +G++VKAS+++
Sbjct: 179 VSAPGHFEAFYGAGGEDPESFYRAFSWEVLEAALKVRREQLEKVFGEQSKGSIVKASREK 238

Query: 319 IRALSRSQEGPS-IWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVS 377
           IRALS+ +EGP  IWPF GES G  NL  K PS SN FG L+EA  +D + L+DLD+ VS
Sbjct: 239 IRALSQHEEGPPRIWPFGGESSGPINLLHKHPSQSNQFGRLYEAHPDDHKQLQDLDLMVS 298

Query: 378 YANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY 437
           +ANI+KG+MA P+YNSR+TK++VVV G+G+ E+ACPH+S S               S +Y
Sbjct: 299 FANITKGSMAGPYYNSRATKISVVVEGEGFFEMACPHLSSS---------------SGSY 343

Query: 438 HKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMES 497
            K+S+R+R    ++ PAGHPV  +ASQNNNL+V+CFE+NA GN RFPLAG+  I    E 
Sbjct: 344 QKISARLRRGVVFVAPAGHPVAVIASQNNNLQVLCFEVNAHGNSRFPLAGKGNIVNEFER 403

Query: 498 EAKELAFNTRADEVERVFGNQDQDWFFKGPSRWHQQ--QQGRAYE 540
           +AKELAFN  + EVER+F NQDQ +FF GP++  ++  + GRA+E
Sbjct: 404 DAKELAFNLPSREVERIFKNQDQAFFFPGPNKQQEEGGRGGRAFE 448

Source: Corylus avellana

Species: Corylus avellana

Genus: Corylus

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13183177|gb|AAK15089.1|AF240006_1 7S globulin [Sesamum indicum]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/525 (48%), Positives = 354/525 (67%), Gaps = 46/525 (8%)

Query: 30  LKQCKHQCRARQQYDEKQKEQCARTCEEYYKEKEQRERHREGESEEEKEWGGRHEWMNPG 89
           L++C   C   QQ+ E Q+E+C R C+E Y    QRE+             GR +  NP 
Sbjct: 89  LRECSRGCE--QQHGE-QREECLRRCQEEY----QREK-------------GRQDDDNPT 128

Query: 90  EPAEKHLRQCQRECDRQEEGGQQRALCRFRCQEKYRREKEG-EGGQHNTQEEEEEEEGD- 147
           +P EK  +QC+ +C RQ EGG        R +E+  RE++G EGG+    E  E EE   
Sbjct: 129 DP-EKQYQQCRLQCRRQGEGGGFSREHCERRREEKYREQQGREGGRGEMYEGREREEEQE 187

Query: 148 -----------EESSRVT---SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVT 193
                      E+   +T   +QHGR+  L KFT RS+LLRG+E YR+ IL A PQTF+ 
Sbjct: 188 EQGRGRIPYVFEDQHFITGFRTQHGRMRVLQKFTDRSELLRGIENYRVAILEAEPQTFIV 247

Query: 194 PTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIV 253
           P H DA++V FV+ G+GTI+++R++ RES N+K+GDI+++ +G T Y+ N D++E+L + 
Sbjct: 248 PNHWDAESVVFVAKGRGTISLVRQDRRESLNIKQGDILKINAGTTAYLINRDNNERLVLA 307

Query: 254 KFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVK 313
           K ++ ++ PG++E F+GAGGENPESF ++FS EILE+AF T+RD L+R+  QQ QG +VK
Sbjct: 308 KLLQPVSTPGEFELFFGAGGENPESFFKSFSDEILEAAFNTRRDRLQRIFGQQRQGVIVK 367

Query: 314 ASKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLD 373
           AS++Q+RA+SR +EG  IWPF GES+GT N++ +RP+HSN +G+L E D++ +R L DLD
Sbjct: 368 ASEEQVRAMSRHEEG-GIWPFGGESKGTINIYQQRPTHSNQYGQLHEVDASQYRQLRDLD 426

Query: 374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEG 433
           +TVS ANI++GAM AP YNS++TK+A+VV G+GY E+ACPH+SRS     +QG +    G
Sbjct: 427 LTVSLANITQGAMTAPHYNSKATKIALVVDGEGYFEMACPHMSRSRGS--YQGET---RG 481

Query: 434 SATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFK 493
             +Y +V+SR+   +  I+PAGHP V VAS N NL+V+CFE+NA  N +FPLAGR  +  
Sbjct: 482 RPSYQRVASRLTRGTVVIIPAGHPFVAVASSNQNLQVLCFEVNANNNEKFPLAGRRNVMN 541

Query: 494 VMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSRWHQQQQGRA 538
            +E EAKELAF   A EVE V  +Q +++FFKGP    QQQQGRA
Sbjct: 542 QLEREAKELAFGMPAREVEEVSRSQQEEFFFKGP---RQQQQGRA 583

Source: Sesamum indicum

Species: Sesamum indicum

Genus: Sesamum

Family: Pedaliaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085227|emb|CBI28722.3| unnamed protein product [Vitis vinifera]

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/532 (45%), Positives = 330/532 (62%), Gaps = 39/532 (7%)

Query: 2   NRKLCFTLFTLSVLVLCAGLAL--ATKDPELKQCKHQCRARQQYDEKQKEQCARTCEEYY 59
           N K  F  F      L   L+L  A +DPEL+QCKHQCR +QQ  E+Q  +C   CE+YY
Sbjct: 62  NAKFPFAFFLCCTFCLWVALSLVAAQEDPELQQCKHQCRVQQQVSERQSGECEHKCEDYY 121

Query: 60  KEKEQRERHREGESEEEKEWGGRHEWMNPGEPAEKHLRQCQRECDRQEEGGQQRALCRFR 119
                RE H                   P    EK L+QC+++C+  + G +QR  C   
Sbjct: 122 -----REHH------------------GPVVDPEKQLQQCRKQCELLQPG-RQREQCHQE 157

Query: 120 CQEKYRREKEGEGGQHNTQEEEEEEEGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKY 179
           CQEKY +++  EGG+   +        D+  + + +  G V  L  F +RS+LLRGL+ Y
Sbjct: 158 CQEKYDQQQLEEGGEEEEENNPYVFR-DQHFAFLRTNQGEVKILEMFDRRSRLLRGLKNY 216

Query: 180 RLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTF 239
           R   L ANPQTFV PTH DA+ V FV  GQGTIT++ +  R S+ ++ GDI+R+P+G T 
Sbjct: 217 RFICLEANPQTFVVPTHYDAEIVGFVCSGQGTITMVCQGKRISFRIRIGDIVRIPAGITL 276

Query: 240 YVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSL 299
           ++ N+  ++KL I  F+  + +PG++E F+GA GENP+SF RAFS ++L SAFK +  +L
Sbjct: 277 HLINSHKNQKLRIAYFLLPVGIPGRFEPFHGAAGENPQSFYRAFSPKLLSSAFKVEEGTL 336

Query: 300 ERVLFQQDQGAMVKASKQQIRALSRSQEGPS--IWPF-AGES-RGTFNLFGKRPSHSNNF 355
           ERV  QQ +G  +KAS +QI+ALS  Q G +  IWPF +GES R  FNL  K PS  NN+
Sbjct: 337 ERVFQQQTKGHFIKASGEQIQALSGGQHGEAAGIWPFTSGESKRPVFNLLNKDPSVCNNY 396

Query: 356 GELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHV 415
           G L EAD+ DFR L+D+DI +SYANI++  M  PF+NSRST VA V+ G+GY+E+ CPH+
Sbjct: 397 GRLHEADAEDFRQLKDMDIEISYANITQEGMMGPFFNSRSTMVAAVLEGEGYLEMVCPHL 456

Query: 416 SRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEI 475
             S  +++ QG+      S  Y KVSS +R  + ++VPAGHP+  VA  + NLE+VCF I
Sbjct: 457 --SGEKQQQQGA------SPIYQKVSSSLRRGTLFVVPAGHPIAIVAGTSWNLEIVCFGI 508

Query: 476 NAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGP 527
           NAE N R PLAG+  +   +E EAKELAF   A EV++VF  Q ++ FF GP
Sbjct: 509 NAENNRREPLAGKGNVVNGLEKEAKELAFALPAREVDKVFRKQKEELFFPGP 560

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479703|ref|XP_003632338.1| PREDICTED: vicilin-like antimicrobial peptides 2-1-like [Vitis vinifera]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/532 (45%), Positives = 330/532 (62%), Gaps = 39/532 (7%)

Query: 2   NRKLCFTLFTLSVLVLCAGLAL--ATKDPELKQCKHQCRARQQYDEKQKEQCARTCEEYY 59
           N K  F  F      L   L+L  A +DPEL+QCKHQCR +QQ  E+Q  +C   CE+YY
Sbjct: 5   NAKFPFAFFLCCTFCLWVALSLVAAQEDPELQQCKHQCRVQQQVSERQSGECEHKCEDYY 64

Query: 60  KEKEQRERHREGESEEEKEWGGRHEWMNPGEPAEKHLRQCQRECDRQEEGGQQRALCRFR 119
                RE H                   P    EK L+QC+++C+  + G +QR  C   
Sbjct: 65  -----REHH------------------GPVVDPEKQLQQCRKQCELLQPG-RQREQCHQE 100

Query: 120 CQEKYRREKEGEGGQHNTQEEEEEEEGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKY 179
           CQEKY +++  EGG+   +        D+  + + +  G V  L  F +RS+LLRGL+ Y
Sbjct: 101 CQEKYDQQQLEEGGEEEEENNPYVFR-DQHFAFLRTNQGEVKILEMFDRRSRLLRGLKNY 159

Query: 180 RLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTF 239
           R   L ANPQTFV PTH DA+ V FV  GQGTIT++ +  R S+ ++ GDI+R+P+G T 
Sbjct: 160 RFICLEANPQTFVVPTHYDAEIVGFVCSGQGTITMVCQGKRISFRIRIGDIVRIPAGITL 219

Query: 240 YVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSL 299
           ++ N+  ++KL I  F+  + +PG++E F+GA GENP+SF RAFS ++L SAFK +  +L
Sbjct: 220 HLINSHKNQKLRIAYFLLPVGIPGRFEPFHGAAGENPQSFYRAFSPKLLSSAFKVEEGTL 279

Query: 300 ERVLFQQDQGAMVKASKQQIRALSRSQEGPS--IWPF-AGES-RGTFNLFGKRPSHSNNF 355
           ERV  QQ +G  +KAS +QI+ALS  Q G +  IWPF +GES R  FNL  K PS  NN+
Sbjct: 280 ERVFQQQTKGHFIKASGEQIQALSGGQHGEAAGIWPFTSGESKRPVFNLLNKDPSVCNNY 339

Query: 356 GELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHV 415
           G L EAD+ DFR L+D+DI +SYANI++  M  PF+NSRST VA V+ G+GY+E+ CPH+
Sbjct: 340 GRLHEADAEDFRQLKDMDIEISYANITQEGMMGPFFNSRSTMVAAVLEGEGYLEMVCPHL 399

Query: 416 SRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEI 475
             S  +++ QG+      S  Y KVSS +R  + ++VPAGHP+  VA  + NLE+VCF I
Sbjct: 400 --SGEKQQQQGA------SPIYQKVSSSLRRGTLFVVPAGHPIAIVAGTSWNLEIVCFGI 451

Query: 476 NAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGP 527
           NAE N R PLAG+  +   +E EAKELAF   A EV++VF  Q ++ FF GP
Sbjct: 452 NAENNRREPLAGKGNVVNGLEKEAKELAFALPAREVDKVFRKQKEELFFPGP 503

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479651|ref|XP_003632318.1| PREDICTED: vicilin-like antimicrobial peptides 2-1-like [Vitis vinifera]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/546 (42%), Positives = 340/546 (62%), Gaps = 46/546 (8%)

Query: 21  LALATKDPELKQCKHQCRARQQYDEKQKEQCARTCEEYYKEKEQRERHREGESEEEKEWG 80
           LA+A  DPEL+ CK QCR   ++  +Q+ +C + CE+Y+ +         G         
Sbjct: 25  LAVANVDPELQLCKSQCRTYHEFSHRQRRECEQKCEDYHGQNHGEGEGEGGGGSRI---- 80

Query: 81  GRHEWMNPGEPAEKHLRQCQRECDRQEEGGQQRALCRFRCQEKYRREKEGEGGQHNTQEE 140
                +N     EK L+QCQ++C+RQ E  QQ+  CR +CQ+ Y R++  EG     Q  
Sbjct: 81  ----VLNSNTDPEKQLQQCQKQCERQRE--QQKEQCRRQCQDTYERQRGEEGKGGGGQSG 134

Query: 141 EEEE---------------------------EGDEESSRVTSQHGRVAFLPKFTQRSKLL 173
           E++E                           +    ++ + +  GR+  L +F QRS+LL
Sbjct: 135 EKDEQGRQQEQGQEQEQEQGQEQQEQNPYVFQDQHYTASLETNEGRIKILQRFHQRSRLL 194

Query: 174 RGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRV 233
           RGL+ YR   L ANPQTFV P HLDA+AV +V+ G+GT++++ +  RES+N+K+GDI+R+
Sbjct: 195 RGLKNYRFVYLEANPQTFVLPAHLDAEAVVYVASGRGTLSLVSQGKRESFNIKQGDIVRI 254

Query: 234 PSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFK 293
            +G T Y+ N D ++KL I K ++ + LP +++ FYG  GENP+SF RAFS E+L SA K
Sbjct: 255 RAGTTIYMINRDKNKKLRIAKLLQPVALPDEFQPFYGPAGENPQSFYRAFSEELLSSALK 314

Query: 294 TKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPF---AGESRGTFNLFGKRPS 350
            ++D ++RV+ QQ++G +VKAS+QQI+ALS+ +E   ++PF   + ES+  FNL  K PS
Sbjct: 315 VEQDRVQRVIKQQNKGVIVKASEQQIQALSQREES-GMFPFPFGSTESKRVFNLLSKEPS 373

Query: 351 HSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEI 410
            SN +G L EAD+N+F+ L+D+DI VSY+NI+KG+M  PF+N+R+TK+AVVV G+GY+E+
Sbjct: 374 ISNRYGRLHEADANEFQQLQDMDIAVSYSNITKGSMEGPFFNTRATKIAVVVKGEGYMEM 433

Query: 411 ACPHVS-----RSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQN 465
           ACPHVS     +  S    +    ++  S  Y ++SS ++    ++VPAGHP++ VA  N
Sbjct: 434 ACPHVSQQQQGQGQSTGEQRREQQQQSASPHYQRLSSPLKRGMLFVVPAGHPLIVVAGNN 493

Query: 466 NNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFK 525
            NLE+VCF++NAE N R  LAG   I   +E EAKELAF+  A EV+ VF  Q++ WFF 
Sbjct: 494 RNLEIVCFDVNAENNRRESLAGDKNIVNALEKEAKELAFSIPAREVDEVFAKQNEWWFFP 553

Query: 526 GPSRWH 531
           GP   H
Sbjct: 554 GPRGGH 559

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75207036|sp|Q9SPL5.1|AMP21_MACIN RecName: Full=Vicilin-like antimicrobial peptides 2-1; AltName: Full=MiAMP2; Contains: RecName: Full=Antimicrobial peptide 2a; AltName: Full=MiAMP2a; Contains: RecName: Full=Antimicrobial peptide 2b; AltName: Full=MiAMP2b; Contains: RecName: Full=Antimicrobial peptide 2c-1; AltName: Full=MiAMP2c-1; Contains: RecName: Full=Antimicrobial peptide 2c-2; AltName: Full=MiAMP2c-2; Contains: RecName: Full=Antimicrobial peptide 2c-3; AltName: Full=MiAMP2c-3; Contains: RecName: Full=Antimicrobial peptide 2d; AltName: Full=MiAMP2d; Flags: Precursor gi|5852872|gb|AAD54244.1|AF161883_1 vicilin precursor [Macadamia integrifolia]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/537 (41%), Positives = 333/537 (62%), Gaps = 30/537 (5%)

Query: 26  KDPE--LKQCKHQCRARQQYDEKQKEQCARTCEEYY-KEK-EQRERHREGESEEEKEWGG 81
           +DP+   +QC+  C+ R++ + +  + C + CE  Y KEK +Q++R+ E + E+E+++  
Sbjct: 120 RDPQQQYEQCQKHCQ-RRETEPRHMQTCQQRCERRYEKEKRKQQKRYEEQQREDEEKYEE 178

Query: 82  R-HEWMNPGEPAEKHLRQCQRECDRQEEGGQQRALCRFRCQEKYRREKEGEGGQHNTQ-- 138
           R  E  N  +P ++    C+R C++QE   +Q+  C+ RC+E+ R+   G G   N Q  
Sbjct: 179 RMKEEDNKRDPQQREYEDCRRRCEQQE--PRQQHQCQLRCREQQRQHGRG-GDMMNPQRG 235

Query: 139 -----EEEEEEEGDEE--------SSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILI 185
                EE EEE+ D          S+R  ++ G ++ L  F  RSKLLR L+ YRL +L 
Sbjct: 236 GSGRYEEGEEEQSDNPYYFDERSLSTRFRTEEGHISVLENFYGRSKLLRALKNYRLVLLE 295

Query: 186 ANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD 245
           ANP  FV PTHLDADA+  V  G+G + +I  +NRESYN++ GD+IR+P+G TFY+ N D
Sbjct: 296 ANPNAFVLPTHLDADAILLVIGGRGALKMIHHDNRESYNLECGDVIRIPAGTTFYLINRD 355

Query: 246 DDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQ 305
           ++E+L+I KF+++I+ PGQY+ F+ AGG+NPE +L  FS EILE+A  T+ + L  V  Q
Sbjct: 356 NNERLHIAKFLQTISTPGQYKEFFPAGGQNPEPYLSTFSKEILEAALNTQTEKLRGVFGQ 415

Query: 306 QDQGAMVKASKQQIRALSRSQEGPSIWPF--AGE-SRGTFNLFGKRPSHSNNFGELFEAD 362
           Q +G +++AS++QIR L+R       W     GE SRG +NLF KRP +SN +G+ +E  
Sbjct: 416 QREGVIIRASQEQIRELTRDDSESRHWHIRRGGESSRGPYNLFNKRPLYSNKYGQAYEVK 475

Query: 363 SNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSER 422
             D+R L+D+D++V  AN+++G+M  PF+N+RSTKV VV +G+  +E+ACPH+S     R
Sbjct: 476 PEDYRQLQDMDLSVFIANVTQGSMMGPFFNTRSTKVVVVASGEADVEMACPHLSGRHGGR 535

Query: 423 RHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIR 482
                   EE    Y +V +R+    A +V AGHPVV V+S N NL +  F INA+ N  
Sbjct: 536 GGGKRHEEEE-DVHYEQVRARLSKREAIVVLAGHPVVFVSSGNENLLLFAFGINAQNNHE 594

Query: 483 FPLAGRNK-IFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSRWHQQQQGRA 538
             LAGR + + + +E +A ELAF     EVE  F +QDQ  FF GP R HQQQ  R+
Sbjct: 595 NFLAGRERNVLQQIEPQAMELAFAAPRKEVEESFNSQDQSIFFPGP-RQHQQQSPRS 650

Source: Macadamia integrifolia

Species: Macadamia integrifolia

Genus: Macadamia

Family: Proteaceae

Order: Proteales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	540
UNIPROTKB|Q9SPL4	666	AMP2-2 "Vicilin-like antimicro	0.716	0.581	0.470	8.1e-104
UNIPROTKB|Q9SPL3	625	AMP2-3 "Vicilin-like antimicro	0.716	0.619	0.468	3.1e-102
UNIPROTKB|Q9SPL5	666	AMP2-1 "Vicilin-like antimicro	0.716	0.581	0.465	8e-102
TAIR|locus:2094404	486	PAP85 [Arabidopsis thaliana (t	0.698	0.775	0.329	4.3e-54
TAIR|locus:2056568	511	AT2G28490 [Arabidopsis thalian	0.253	0.268	0.309	9.7e-23
TAIR|locus:2046273	707	AT2G18540 "AT2G18540" [Arabido	0.611	0.466	0.230	3.8e-18
TAIR|locus:2115390	522	AT4G36700 "AT4G36700" [Arabido	0.307	0.318	0.227	2.8e-14
UNIPROTKB|Q9XHP0	459	Q9XHP0 "11S globulin seed stor	0.205	0.241	0.238	8e-07
TAIR|locus:2065516	356	AT2G28680 "AT2G28680" [Arabido	0.375	0.570	0.219	0.00026
TAIR|locus:2026545	356	AT1G07750 "AT1G07750" [Arabido	0.220	0.334	0.261	0.00039

UNIPROTKB|Q9SPL4 AMP2-2 "Vicilin-like antimicrobial peptides 2-2" [Macadamia integrifolia (taxid:60698)]

 Score = 929 (332.1 bits), Expect = 8.1e-104, Sum P(3) = 8.1e-104
 Identities = 185/393 (47%), Positives = 261/393 (66%)

Query:   150 SSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQ 209
             S+R  ++ G ++ L  F  RSKLLR L+ YRL +L ANP  FV PTHLDADA+  V+ G+
Sbjct:   260 STRFRTEEGHISVLENFYGRSKLLRALKNYRLVLLEANPNAFVLPTHLDADAILLVTGGR 319

Query:   210 GTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFY 269
             G + +I  +NRESYN++ GD+IR+P+G TFY+ N D++E+L+I KF+++I+ PGQY+ F+
Sbjct:   320 GALKMIHRDNRESYNLECGDVIRIPAGTTFYLINRDNNERLHIAKFLQTISTPGQYKEFF 379

Query:   270 GAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGP 329
              AGG+NPE +L  FS EILE+A  T+ + L  VL QQ +G ++ AS++QIR L+R     
Sbjct:   380 PAGGQNPEPYLSTFSKEILEAALNTQAERLRGVLGQQREGVIISASQEQIRELTRDDSES 439

Query:   330 SIWPF--AGES-RGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAM 386
               W     GES RG +NLF KRP +SN +G+ +E    D+R L+D+D++V  ANI++G+M
Sbjct:   440 RRWHIRRGGESSRGPYNLFNKRPLYSNKYGQAYEVKPEDYRQLQDMDVSVFIANITQGSM 499

Query:   387 AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRT 446
               PF+N+RSTKV VV +G+  +E+ACPH+S     RR  G    EE    Y +V +R+  
Sbjct:   500 MGPFFNTRSTKVVVVASGEADVEMACPHLSGRHGGRRG-GKRHEEEEDVHYEQVKARLSK 558

Query:   447 DSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNK-IFKVMESEAKELAFN 505
               A +VP GHPVV V+S N NL +  F INA+ N    LAGR + + + +E +A ELAF 
Sbjct:   559 REAIVVPVGHPVVFVSSGNENLLLFAFGINAQNNHENFLAGRERNVLQQIEPQAMELAFA 618

Query:   506 TRADEVERVFGNQDQDWFFKGPSRWHQQQQGRA 538
                 EVE +F +QD+  FF GP R HQQQ  R+
Sbjct:   619 APRKEVEELFNSQDESIFFPGP-RQHQQQSSRS 650

GO:0050832 "defense response to fungus" evidence=ISS

UNIPROTKB|Q9SPL3 AMP2-3 "Vicilin-like antimicrobial peptides 2-3" [Macadamia integrifolia (taxid:60698)]

 Score = 913 (326.5 bits), Expect = 3.1e-102, Sum P(3) = 3.1e-102
 Identities = 184/393 (46%), Positives = 260/393 (66%)

Query:   150 SSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQ 209
             S+R  ++ G ++ L  F  RSKLLR L+ YRL +L ANP  FV PTHLDADA+  V  G+
Sbjct:   219 STRFRTEEGHISVLENFYGRSKLLRALKNYRLVLLEANPNAFVLPTHLDADAILLVIGGR 278

Query:   210 GTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFY 269
             G + +I  +NRESYN++ GD+IR+P+G TFY+ N D++E+L+I KF+++I+ PGQY+ F+
Sbjct:   279 GALKMIHRDNRESYNLECGDVIRIPAGTTFYLINRDNNERLHIAKFLQTISTPGQYKEFF 338

Query:   270 GAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGP 329
              AGG+NPE +L  FS EILE+A  T+ + L  VL QQ +G +++AS++QIR L+R     
Sbjct:   339 PAGGQNPEPYLSTFSKEILEAALNTQTERLRGVLGQQREGVIIRASQEQIRELTRDDSES 398

Query:   330 SIWPF--AGES-RGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAM 386
               W     GES RG +NLF KRP +SN +G+ +E    D+R L+D+D++V  ANI++G+M
Sbjct:   399 RRWHIRRGGESSRGPYNLFNKRPLYSNKYGQAYEVKPEDYRQLQDMDVSVFIANITQGSM 458

Query:   387 AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRT 446
               PF+N+RSTKV VV +G+  +E+ACPH+S     R   G    EE    Y +V +R+  
Sbjct:   459 MGPFFNTRSTKVVVVASGEADVEMACPHLSGRHGGRGG-GKRHEEEEEVHYEQVRARLSK 517

Query:   447 DSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNK-IFKVMESEAKELAFN 505
               A +V AGHPVV V+S N NL +  F INA+ N    LAGR + + + +E +A ELAF 
Sbjct:   518 REAIVVLAGHPVVFVSSGNENLLLFAFGINAQNNHENFLAGRERNVLQQIEPQAMELAFA 577

Query:   506 TRADEVERVFGNQDQDWFFKGPSRWHQQQQGRA 538
                 EVE +F +QD+  FF GP R HQQQ  R+
Sbjct:   578 ASRKEVEELFNSQDESIFFPGP-RQHQQQSPRS 609

GO:0043245 "extraorganismal space" evidence=NAS

GO:0045735 "nutrient reservoir activity" evidence=NAS

GO:0050832 "defense response to fungus" evidence=IDA

UNIPROTKB|Q9SPL5 AMP2-1 "Vicilin-like antimicrobial peptides 2-1" [Macadamia integrifolia (taxid:60698)]

 Score = 907 (324.3 bits), Expect = 8.0e-102, Sum P(3) = 8.0e-102
 Identities = 183/393 (46%), Positives = 258/393 (65%)

Query:   150 SSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQ 209
             S+R  ++ G ++ L  F  RSKLLR L+ YRL +L ANP  FV PTHLDADA+  V  G+
Sbjct:   260 STRFRTEEGHISVLENFYGRSKLLRALKNYRLVLLEANPNAFVLPTHLDADAILLVIGGR 319

Query:   210 GTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFY 269
             G + +I  +NRESYN++ GD+IR+P+G TFY+ N D++E+L+I KF+++I+ PGQY+ F+
Sbjct:   320 GALKMIHHDNRESYNLECGDVIRIPAGTTFYLINRDNNERLHIAKFLQTISTPGQYKEFF 379

Query:   270 GAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGP 329
              AGG+NPE +L  FS EILE+A  T+ + L  V  QQ +G +++AS++QIR L+R     
Sbjct:   380 PAGGQNPEPYLSTFSKEILEAALNTQTEKLRGVFGQQREGVIIRASQEQIRELTRDDSES 439

Query:   330 SIWPF--AGES-RGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAM 386
               W     GES RG +NLF KRP +SN +G+ +E    D+R L+D+D++V  AN+++G+M
Sbjct:   440 RHWHIRRGGESSRGPYNLFNKRPLYSNKYGQAYEVKPEDYRQLQDMDLSVFIANVTQGSM 499

Query:   387 AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRT 446
               PF+N+RSTKV VV +G+  +E+ACPH+S     R   G    EE    Y +V +R+  
Sbjct:   500 MGPFFNTRSTKVVVVASGEADVEMACPHLSGRHGGRGG-GKRHEEEEDVHYEQVRARLSK 558

Query:   447 DSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNK-IFKVMESEAKELAFN 505
               A +V AGHPVV V+S N NL +  F INA+ N    LAGR + + + +E +A ELAF 
Sbjct:   559 REAIVVLAGHPVVFVSSGNENLLLFAFGINAQNNHENFLAGRERNVLQQIEPQAMELAFA 618

Query:   506 TRADEVERVFGNQDQDWFFKGPSRWHQQQQGRA 538
                 EVE  F +QDQ  FF GP R HQQQ  R+
Sbjct:   619 APRKEVEESFNSQDQSIFFPGP-RQHQQQSPRS 650

GO:0050832 "defense response to fungus" evidence=ISS

TAIR|locus:2094404 PAP85 [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 130/395 (32%), Positives = 208/395 (52%)

Query:   155 SQHGRVAFLPKFTQRSK-LLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTIT 213
             S+ G V  LPKFT+ +  L RG+E YR  ++   P TF  P HLDADAVF V  G+G I 
Sbjct:    77 SKEGFVRVLPKFTKHAPALFRGIENYRFSLVEMEPTTFFVPHHLDADAVFIVLQGKGVIE 136

Query:   214 VIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGG 273
              + +  +ES+++ +GD++R+PSG T ++TNT+    L + +    +N PG Y+ ++ A  
Sbjct:   137 FVTDKTKESFHITKGDVVRIPSGVTNFITNTNQTVPLRLAQITVPVNNPGNYKDYFPAAS 196

Query:   274 ENPESFLRAFSWEILESAFKTKRDSLERVLFQQD---QGAMVKASKQQIRALSRSQEGPS 330
             +  +S+   F+ E+L ++F    + L R++ +     QG + + S  QI+ L+     PS
Sbjct:   197 QFQQSYFNGFTKEVLSTSFNVPEELLGRLVTRSKEIGQGIIRRISPDQIKELAEHATSPS 256

Query:   331 IWPFAGESRGT----------FNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYAN 380
                 A + +            FNLF   P +SN+FG   EA   ++  L+DL I  ++AN
Sbjct:   257 NKHKAKKEKEEDKDLRTLWTPFNLFAIDPIYSNDFGHFHEAHPKNYNQLQDLHIAAAWAN 316

Query:   381 ISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPH-VSRSSSERRHQGSSTREEGSATYHK 439
             +++G++  P +NS++T V  V  G    E+A P+   R   +   QG    E+ S   HK
Sbjct:   317 MTQGSLFLPHFNSKTTFVTFVENGCARFEMATPYKFQRGQQQWPGQGQEEEEDMSENVHK 376

Query:   440 VSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEA 499
             V SR+     +IVPAGHP  T+ SQ+ +   V F I A  + R  LAG   +   +   A
Sbjct:   377 VVSRVCKGEVFIVPAGHPF-TILSQDQDFIAVGFGIYATNSKRTFLAGEENLLSNLNPAA 435

Query:   500 KELAFNTRADEVERVFGNQDQDWFFKGPSRWHQQQ 534
               + F   +   E++F +Q+  +F   P+   QQQ
Sbjct:   436 TRVTFGVGSKVAEKLFTSQNYSYF--APTSRSQQQ 468

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009845 "seed germination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

TAIR|locus:2056568 AT2G28490 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 9.7e-23, Sum P(3) = 9.7e-23
 Identities = 44/142 (30%), Positives = 73/142 (51%)

Query:   174 RGLEK-YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIR 232
             R +EK   +G L   P+T   P +LD+  + F+  G+ T+ VI ++      +K GDI  
Sbjct:   111 RIIEKPMHIGFLTMEPKTLFVPQYLDSSLLIFIRQGEATLGVICKDEFGERKLKAGDIYW 170

Query:   233 VPSGNTFYVTNTDDDEKLYIVKFIKSINLPG--QYEAFYGAGGENPESFLRAFSWEILES 290
             +P+G+ FY+ NT   ++L+++  I      G   ++ FY  GG  P S L  F    L S
Sbjct:   171 IPAGSVFYLHNTGLGQRLHVICSIDPTQSLGFETFQPFYIGGG--PSSVLAGFDPHTLTS 228

Query:   291 AFKTKRDSLERVLFQQDQGAMV 312
             AF      L++++  Q +G +V
Sbjct:   229 AFNVSLPELQQMMMSQFRGPIV 250

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2046273 AT2G18540 "AT2G18540" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 3.8e-18, P = 3.8e-18
 Identities = 84/364 (23%), Positives = 160/364 (43%)

Query:   179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNT 238
             Y +  +   P   + P  L +D VFFV  G G +  I E +     ++RGD+ R+ SG  
Sbjct:    70 YHIQFITLEPNALLLPLLLHSDMVFFVHTGTGILNWIDEESERKLELRRGDVFRLRSGTV 129

Query:   239 FYVTNTDDDEKLYIVKFI-KSINLP--GQYEAFYGAG-GENPESFLRAFSWEILESAFKT 294
             FYV ++++  ++Y +  + K +N P  G Y +      G +  +   AF+  + E   + 
Sbjct:   130 FYV-HSNEKLRVYAIFNVGKCLNDPCLGAYSSVRDLLLGFDDRTLRSAFA--VPEDILRK 186

Query:   295 KRDSLERVLF------QQDQGAMVKASKQQIRALSRSQEGPS----IWPFAGESRG---T 341
              RD+ +  L        + QG      + ++  L  S E  +    + P    ++    T
Sbjct:   187 IRDATKPPLIVNALPRNRTQGLEEDKWQSRLVRLFVSVEDVTDHLAMKPIVDTNKKKSRT 246

Query:   342 FNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVV 401
             FN+F + P   NN G     D  D   L+     V   N++KG+M  P +N  + ++++V
Sbjct:   247 FNVFEEDPDFENNNGRSIVVDEKDLDALKGSRFGVFMVNLTKGSMIGPHWNPSACEISIV 306

Query:   402 VAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTV 461
             + G+G + +       S    R   S   EEG                ++VP  HP+  +
Sbjct:   307 LEGEGMVRVVNQQSLSSCKNDRKSESFMVEEGDV--------------FVVPKFHPMAQM 352

Query:   462 ASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQD 521
             + +N++   + F  +A+ N    L G++ + KV++ +   ++FN   + ++ +   Q + 
Sbjct:   353 SFENSSFVFMGFSTSAKTNHPQFLVGQSSVLKVLDRDVVAVSFNLSNETIKGLLKAQKES 412

Query:   522 WFFK 525
               F+
Sbjct:   413 VIFE 416

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA

TAIR|locus:2115390 AT4G36700 "AT4G36700" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
 Identities = 41/180 (22%), Positives = 84/180 (46%)

Query:   341 TFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAV 400
             TFN+F   P   + +G     +  D + L+   + VS  N+++G+M  P +N  + ++++
Sbjct:   264 TFNVFESEPDFESPYGRTITINRKDLKVLKGSMVGVSMVNLTQGSMMGPHWNPWACEISI 323

Query:   401 VVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVT 460
             V+ G G + +      RSS       S+T  E       V  ++     + VP  HP+  
Sbjct:   324 VLKGAGMVRVL-----RSSIS-----SNTSSECK----NVRFKVEEGDIFAVPRLHPMAQ 369

Query:   461 VASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQ 520
             ++  N++L  V F  +A+ N    LAG +   ++++ +    + N  +  ++ + G Q +
Sbjct:   370 MSFNNDSLVFVGFTTSAKNNEPQFLAGEDSALRMLDRQVLAASLNVSSVTIDGLLGAQKE 429

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS

UNIPROTKB|Q9XHP0 Q9XHP0 "11S globulin seed storage protein 2" [Sesamum indicum (taxid:4182)]

 Score = 107 (42.7 bits), Expect = 8.0e-07, Sum P(4) = 8.0e-07
 Identities = 31/130 (23%), Positives = 68/130 (52%)

Query:   215 IRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSIN-----LPGQYEAFY 269
             +R+ +++ + +++GDI+ +PSG   +  N D  E L  V  I  +N     L  ++ AFY
Sbjct:   137 VRDLHQKVHRLRQGDIVAIPSGAAHWCYN-DGSEDLVAVS-INDVNHLSNQLDQKFRAFY 194

Query:   270 GAGG---------ENPESF---LRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQ 317
              AGG         +  ++F    RAF  E+L  AF   ++++ R+  ++++  ++  +++
Sbjct:   195 LAGGVPRSGEQEQQARQTFHNIFRAFDAELLSEAFNVPQETIRRMQSEEEERGLIVMARE 254

Query:   318 QIRALSRSQE 327
             ++  +   +E
Sbjct:   255 RMTFVRPDEE 264

GO:0042735 "protein body" evidence=NAS

GO:0045735 "nutrient reservoir activity" evidence=NAS

GO:0051259 "protein oligomerization" evidence=NAS

TAIR|locus:2065516 AT2G28680 "AT2G28680" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 0.00026, Sum P(2) = 0.00026
 Identities = 49/223 (21%), Positives = 93/223 (41%)

Query:   194 PTHLDADAVFFVSWGQGTI-TVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEK--L 250
             P + D+  V +V  G GT   V+ E   +   +K+GD I +P G   +  N +D E   L
Sbjct:    52 PRYSDSPKVAYVLQGAGTAGIVLPEKEEKVIAIKKGDSIALPFGVVTWWFNNEDTELVVL 111

Query:   251 YIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGA 310
             ++ +  K  +  GQ+  FY  G          FS E +  A+     ++++++  Q    
Sbjct:   112 FLGETHKG-HKAGQFTDFYLTGSNG---IFTGFSTEFVGRAWDLDETTVKKLVGSQTGNG 167

Query:   311 MVKASKQQIRALSRSQEGPSIWPFAGESRG-TFN-LFGKRPSHSNNFGELFEADSNDFRP 368
             +VK        +  S + P   P  G+ +G   N L         + G +   ++ +   
Sbjct:   168 IVK--------VDASLKMPE--PKKGDRKGFVLNCLEAPLDVDIKDGGRVVVLNTKNLPL 217

Query:   369 LEDLDITVSYANISKGAMAAPFYNSRST-KVAVVVAGDGYIEI 410
             + ++        I   +M +P ++  S  +V  +V G G ++I
Sbjct:   218 VGEVGFGADLVRIDGHSMCSPGFSCDSALQVTYIVGGSGRVQI 260

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS

TAIR|locus:2026545 AT1G07750 "AT1G07750" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 0.00039, Sum P(2) = 0.00039
 Identities = 33/126 (26%), Positives = 58/126 (46%)

Query:   191 FVTPTHLDADAVFFVSWGQGTI-TVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEK 249
             F  P + D+  V +V  G GT   V+ E   +   +K+GD I +P G   +  N +D E 
Sbjct:    49 FAVPRYSDSSKVAYVLQGSGTAGIVLPEKEEKVIAIKQGDSIALPFGVVTWWFNNEDPEL 108

Query:   250 --LYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQD 307
               L++ +  K  +  GQ+  FY  G          FS E +  A+    +++++++  Q 
Sbjct:   109 VILFLGETHKG-HKAGQFTEFYLTG---TNGIFTGFSTEFVGRAWDLDENTVKKLVGSQT 164

Query:   308 QGAMVK 313
                +VK
Sbjct:   165 GNGIVK 170

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS

GO:0005507 "copper ion binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023755001 SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (520 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	540
smart00835	146	smart00835, Cupin_1, Cupin	1e-41
pfam00190	139	pfam00190, Cupin_1, Cupin	1e-22
pfam00190	139	pfam00190, Cupin_1, Cupin	7e-16
smart00835	146	smart00835, Cupin_1, Cupin	9e-10
pfam04702	147	pfam04702, Vicilin_N, Vicilin N terminal region	2e-06
PLN00212	493	PLN00212, PLN00212, glutelin; Provisional	9e-04
COG0662	127	COG0662, {ManC}, Mannose-6-phosphate isomerase [Ca	0.002
pfam11699	85	pfam11699, Mif2, Mif2/CENP-C like	0.002
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.002

>gnl|CDD|214845 smart00835, Cupin_1, Cupin

 Score =  146 bits (370), Expect = 1e-41
 Identities = 54/168 (32%), Positives = 75/168 (44%), Gaps = 22/168 (13%)

Query: 345 FGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAG 404
              RP  SN  G L EAD  +F  L  L I+ +  N+  G M  P Y+ R+T++  VV G
Sbjct: 1   LEPRPDFSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRG 60

Query: 405 DGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQ 464
           +G + +  P+                           +R+R    ++VP GHP   V S 
Sbjct: 61  EGRVGVVDPN---------------------GNKVYDARLREGDVFVVPQGHPHFQVNSG 99

Query: 465 NNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVE 512
           + NLE V F  N   N RF LAGRN + + +  E    AF   A+EV 
Sbjct: 100 DENLEFVAFNTNDP-NRRFFLAGRNSVLRGLPPEVLAAAFGVSAEEVR 146

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 146

>gnl|CDD|215780 pfam00190, Cupin_1, Cupin

 Score = 93.5 bits (233), Expect = 1e-22
 Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 22/160 (13%)

Query: 342 FNLFGKRPSHSNNFGELFEADSNDFRPLEDL-DITVSYANISKGAMAAPFYNSRSTKVAV 400
           FNL    P  ++  G L  A+ N+   L  L    V    I  G +  P Y+  +T++  
Sbjct: 1   FNLLEPSPVFNSEGGRLETANPNNLPGLLGLAGSAVRRDLIEPGGLLLPHYHPNATEILY 60

Query: 401 VVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVT 460
           V+ G G +    P                   G   +H+   ++R    ++VPAG     
Sbjct: 61  VLQGRGRVGFVVPG-----------------CGFRVFHQ---KLREGDVFVVPAGFAHWQ 100

Query: 461 VASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAK 500
             S +  LE+V F+ N   N   P     + F +  +EA+
Sbjct: 101 YNSGDPGLELVAFDTNNPANQ-LPREVLARAFFLAGNEAR 139

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 139

>gnl|CDD|215780 pfam00190, Cupin_1, Cupin

 Score = 74.2 bits (183), Expect = 7e-16
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 10/138 (7%)

Query: 147 DEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTP-THLDADAVFFV 205
            E S    S+ GR+            L GL    +   +  P   + P  H +A  + +V
Sbjct: 4   LEPSPVFNSEGGRLETA--NPNNLPGLLGLAGSAVRRDLIEPGGLLLPHYHPNATEILYV 61

Query: 206 SWGQGTITVIRENN---RESYNVKRGDIIRVPSGNTFYVTNTDDD-EKLYIVKFI---KS 258
             G+G +  +            ++ GD+  VP+G   +  N+ D   +L           
Sbjct: 62  LQGRGRVGFVVPGCGFRVFHQKLREGDVFVVPAGFAHWQYNSGDPGLELVAFDTNNPANQ 121

Query: 259 INLPGQYEAFYGAGGENP 276
           +       AF+ AG E  
Sbjct: 122 LPREVLARAFFLAGNEAR 139

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 139

>gnl|CDD|214845 smart00835, Cupin_1, Cupin

 Score = 56.9 bits (138), Expect = 9e-10
 Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 18/159 (11%)

Query: 147 DEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIAN--PQTFVTP-THLDADAVF 203
            E     +++ GR+               L    +     N  P   + P  H  A  + 
Sbjct: 1   LEPRPDFSNEGGRL-----READPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELL 55

Query: 204 FVSWGQGTITVIRENNRE--SYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINL 261
           +V  G+G + V+  N  +     ++ GD+  VP G+  +  N+  DE L  V F  + N 
Sbjct: 56  YVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNS-GDENLEFVAF--NTND 112

Query: 262 PGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLE 300
           P +   F+ AG  +    LR    E+L +AF    + + 
Sbjct: 113 PNRR--FFLAGRNS---VLRGLPPEVLAAAFGVSAEEVR 146

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 146

>gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 19/133 (14%)

Query: 31  KQCKHQCRARQQYDEKQKEQCARTCEEYYKEKEQRERHRE-----------GESEEEKEW 79
           +QC+ +C   +   +++++QC R C+E YKE++Q++R RE              ++ +  
Sbjct: 14  EQCQRRCEQ-ETRGQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEPR 72

Query: 80  GGRHEWMNPGEPAEKHLRQ-------CQRECDRQEEGGQQRALCRFRCQEKYRREKEGEG 132
                        EK  +Q       CQ+ C +QE+  +++  C+  C+E+Y+    GEG
Sbjct: 73  HRPTCQQRCERRYEKEQQQQQRQYQECQQRCQQQEQRPRRQQQCQRECREQYQEHGRGEG 132

Query: 133 GQHNTQEEEEEEE 145
              N + EEE  E
Sbjct: 133 ENINQEGEEERSE 145

This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147

>gnl|CDD|215106 PLN00212, PLN00212, glutelin; Provisional

 Score = 41.7 bits (98), Expect = 9e-04
 Identities = 72/381 (18%), Positives = 145/381 (38%), Gaps = 72/381 (18%)

Query: 204 FVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDE--KLYIVKFIKSINL 261
           F++ GQ      R+ +++ +  ++GD++ +P+G   +  N  D     LY+     + N 
Sbjct: 131 FLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQ 190

Query: 262 --PGQYEAFYGAGGENPE--------------SFLRAFSWEILESAFKTKRDSLERVLFQ 305
             P Q E F  AG  N +              +    FS E+L  A        +R+  Q
Sbjct: 191 LEPRQRE-FLLAGNNNRQQQVYGRSIEQHSGQNIFSGFSTELLSEALGINAQVAKRLQSQ 249

Query: 306 QDQ-GAMVK-----------ASKQQIRA------------LSRSQEGPSIWPFAGESRGT 341
            DQ G +++            ++QQ +A              +SQ+    W    E+  T
Sbjct: 250 NDQRGEIIRVKNGLQLLQPTLTQQQEQAQQQQQRLYQQVQYQQSQQTSGRWNGLDENFCT 309

Query: 342 FNLFG--KRPSHSNNF----GELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRS 395
             +    + PS ++ +    G +   +S  F  L  + ++ +  N+ + A+ +PF+N  +
Sbjct: 310 IKVRLNIENPSRADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNA 369

Query: 396 TKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAG 455
             V  +  G   +++             + G +            +  +R     I+P  
Sbjct: 370 HSVVYITQGRARVQVV-----------SNNGKTV----------FNGVLRPGQLLIIPQH 408

Query: 456 HPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVF 515
           +  V   ++    + + F+ NA   +   +AG+N IF+ +  +    A+    +E  R+ 
Sbjct: 409 Y-AVLKKAEREGCQYIAFKTNANAMVSH-IAGKNSIFRALPVDVIANAYRISREEARRLK 466

Query: 516 GNQDQDWFFKGPSRWHQQQQG 536
            N+  +     P    Q  QG
Sbjct: 467 NNRGDELGAFTPRFQQQSYQG 487

Length = 493

>gnl|CDD|223734 COG0662, {ManC}, Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 177 EKYRLGILIANPQT-FVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPS 235
           ++Y +  ++  P        H   D  ++V  G G +T+      E   VK GD + +P+
Sbjct: 34  DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI----GGEEVEVKAGDSVYIPA 89

Query: 236 GNTFYVTNT 244
           G    V NT
Sbjct: 90  GTPHRVRNT 98

Length = 127

>gnl|CDD|152135 pfam11699, Mif2, Mif2/CENP-C like

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 182 GILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFY 240
           GIL   P     P +      VF+V  G+  +TV    +  S+ + +G + +VP GN + 
Sbjct: 15  GILDLPPGAEKKPKNSKKMTMVFYVIQGRVEVTV----HETSFVIGKGGVFQVPRGNEYS 70

Query: 241 VTNTDDDE 248
           + N  + E
Sbjct: 71  IANIGNKE 78

Mif2 is a yeast DNA-binding kinetochore protein which is orthologous to mammalian CENP-C, the inner-kinetochore centromere (CEN) binding protein. Mif2 binds in the CDEIII region of the budding-yeast centromere, and has been shown to recruit a substantial subset of all inner and outer kinetochore proteins. Mif2 adopts a cupin fold and is extremely similar both in polypeptide chain conformation and in dimer geometry to the dimerisation domain of a bacterial transcription factor. The Mif2 dimer appears to be part of an enhanceosome-like structure that nucleates kinetochore assembly in budding yeast. Length = 85

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 12/118 (10%)

Query: 44  DEKQKEQCARTCEEYYKEKEQRERHREGESE----EEKEWGGRHEWMNPGEPAEKHLRQC 99
           D K+ E    T  E  +++++ E     + E    E  E    HE        ++H  Q 
Sbjct: 760 DRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQS 819

Query: 100 QRECDRQE---EGGQQRALCRFRCQEKYRR-----EKEGEGGQHNTQEEEEEEEGDEE 149
           + + D  E   E G+Q      + + K            +GG    +EEEEEEE +EE
Sbjct: 820 ETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEE 877

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	540
PLN00212	493	glutelin; Provisional	100.0
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	100.0
PLN00212	493	glutelin; Provisional	99.94
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	99.94
smart00835	146	Cupin_1 Cupin. This family represents the conserve	99.88
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	99.87
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	99.81
smart00835	146	Cupin_1 Cupin. This family represents the conserve	99.78
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	99.71
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	99.56
PRK11171	266	hypothetical protein; Provisional	99.52
PF04702	147	Vicilin_N: Vicilin N terminal region; InterPro: IP	99.29
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	99.27
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	99.22
PF04702	147	Vicilin_N: Vicilin N terminal region; InterPro: IP	99.14
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	99.12
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	99.07
PRK13290	125	ectC L-ectoine synthase; Reviewed	98.92
PRK04190	191	glucose-6-phosphate isomerase; Provisional	98.91
PRK04190	191	glucose-6-phosphate isomerase; Provisional	98.9
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	98.9
COG1917	131	Uncharacterized conserved protein, contains double	98.9
COG3837	161	Uncharacterized conserved protein, contains double	98.85
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	98.79
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	98.74
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	98.64
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	98.57
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	98.57
PRK11171	266	hypothetical protein; Provisional	98.56
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	98.52
COG1917	131	Uncharacterized conserved protein, contains double	98.51
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	98.48
PRK13290	125	ectC L-ectoine synthase; Reviewed	98.47
COG3837	161	Uncharacterized conserved protein, contains double	98.39
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	98.37
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	98.36
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	98.23
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	98.19
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	98.18
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	98.17
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	98.14
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	98.12
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	98.08
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	98.06
COG3257	264	GlxB Uncharacterized protein, possibly involved in	98.05
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	98.03
COG4297	163	Uncharacterized protein containing double-stranded	98.02
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	98.0
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	97.99
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	97.99
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	97.9
COG1791	181	Uncharacterized conserved protein, contains double	97.89
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	97.78
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	97.62
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	97.53
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	97.49
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	97.49
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	97.41
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	97.4
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	97.33
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	97.32
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	97.26
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	97.26
COG1791	181	Uncharacterized conserved protein, contains double	97.26
PRK13500	312	transcriptional activator RhaR; Provisional	97.26
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	97.25
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	97.24
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	97.15
PRK13501	290	transcriptional activator RhaR; Provisional	97.14
COG4297	163	Uncharacterized protein containing double-stranded	97.14
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	97.08
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	97.05
PRK13503	278	transcriptional activator RhaS; Provisional	96.98
COG3450	116	Predicted enzyme of the cupin superfamily [General	96.95
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	96.95
PRK13502	282	transcriptional activator RhaR; Provisional	96.82
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	96.82
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	96.79
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	96.79
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	96.75
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	96.71
PRK13501	290	transcriptional activator RhaR; Provisional	96.62
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	96.52
PRK15131	389	mannose-6-phosphate isomerase; Provisional	96.51
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	96.44
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	96.43
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	96.42
PRK13500	312	transcriptional activator RhaR; Provisional	96.4
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	96.31
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	96.3
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	96.23
PRK13502	282	transcriptional activator RhaR; Provisional	96.22
KOG2107	179	consensus Uncharacterized conserved protein, conta	96.07
PRK10572	290	DNA-binding transcriptional regulator AraC; Provis	96.02
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	95.73
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	95.67
PRK13503	278	transcriptional activator RhaS; Provisional	95.65
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	95.55
PF12852	186	Cupin_6: Cupin	95.53
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	95.37
TIGR01015	429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	95.36
COG1482	312	ManA Phosphomannose isomerase [Carbohydrate transp	95.36
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	95.33
PRK05341	438	homogentisate 1,2-dioxygenase; Provisional	95.23
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	95.19
COG1898	173	RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela	95.08
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	95.01
COG3450	116	Predicted enzyme of the cupin superfamily [General	94.88
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	94.81
COG1741	276	Pirin-related protein [General function prediction	94.72
KOG2107	179	consensus Uncharacterized conserved protein, conta	94.22
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	94.04
PLN02288	394	mannose-6-phosphate isomerase	94.04
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	93.38
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	93.21
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	93.12
PRK00924	276	5-keto-4-deoxyuronate isomerase; Provisional	92.66
PF05995	175	CDO_I: Cysteine dioxygenase type I; InterPro: IPR0	92.44
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	92.23
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	91.86
PF05118	163	Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxyl	91.84
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	91.69
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	91.67
COG3257	264	GlxB Uncharacterized protein, possibly involved in	91.56
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	90.91
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	90.81
PRK15131	389	mannose-6-phosphate isomerase; Provisional	90.81
PF13759	101	2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB	90.7
PF12852	186	Cupin_6: Cupin	90.47
TIGR02466	201	conserved hypothetical protein. This family consis	90.43
KOG3706	629	consensus Uncharacterized conserved protein [Funct	90.3
COG1898	173	RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela	89.92
PF14861	31	Antimicrobial21: Plant antimicrobial peptide	89.88
PRK05341	438	homogentisate 1,2-dioxygenase; Provisional	88.79
PLN02288	394	mannose-6-phosphate isomerase	88.47
PRK09685	302	DNA-binding transcriptional activator FeaR; Provis	87.9
TIGR01015	429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	87.87
PLN02658	435	homogentisate 1,2-dioxygenase	87.85
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	87.73
PLN02658	435	homogentisate 1,2-dioxygenase	87.4
PF11142	63	DUF2917: Protein of unknown function (DUF2917); In	86.54
KOG3995	279	consensus 3-hydroxyanthranilate oxygenase HAAO [Am	85.27
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	84.67
COG3542	162	Uncharacterized conserved protein [Function unknow	84.41
COG2850	383	Uncharacterized conserved protein [Function unknow	84.2
PF06865	94	DUF1255: Protein of unknown function (DUF1255); In	83.57
KOG3706	629	consensus Uncharacterized conserved protein [Funct	83.16
PRK10579	94	hypothetical protein; Provisional	82.64
PF06172	139	Cupin_5: Cupin superfamily (DUF985); InterPro: IPR	82.6
PF05118	163	Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxyl	81.73
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	81.41
PF09313	82	DUF1971: Domain of unknown function (DUF1971); Int	80.91
PF02678	107	Pirin: Pirin; InterPro: IPR003829 This entry repre	80.86
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	80.66

>PLN00212 glutelin; Provisional

Probab=100.00  E-value=2.1e-70  Score=588.18  Aligned_cols=347  Identities=18%  Similarity=0.336  Sum_probs=301.2

Q ss_pred             ceeecCCceEEEeccCcccccccc--ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEE-----
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESY-----  223 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~--Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~-----  223 (540)
                      .+|++|+|.++.|   |+++++|+  |++.+|+   +|+|+|+++|||++|++++||++|+|++|+|.|||+++|     
T Consensus        56 ~ri~se~G~~E~~---~~~~~q~~caGv~~~R~---~i~p~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~  129 (493)
T PLN00212         56 RKVRSEAGVTEYF---DEKNEQFQCTGVFVIRR---VIEPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQ  129 (493)
T ss_pred             hhhcccCceeeec---CCCChhhcccceEEEEE---EecCCcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcc
Confidence            4889999999885   78899999  9998888   999999999999999999999999999999999988774     


Q ss_pred             ---------------------eeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCC----CCcccccccCCCCC---
Q 040805          224 ---------------------NVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINL----PGQYEAFYGAGGEN---  275 (540)
Q Consensus       224 ---------------------~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~----pg~~~~f~LaG~~~---  275 (540)
                                           +|++||||+||||++||++|+| ++++++|++++++|.    +..++.|||||+.+   
T Consensus       130 ~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~G-d~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~  208 (493)
T PLN00212        130 QFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDG-DAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQ  208 (493)
T ss_pred             cccccccccccccccccccceEeccCCEEEECCCCeEEEEeCC-CCcEEEEEEEeccccccccCCCcceeeccCCCcccc
Confidence                                 8999999999999999999998 568999999988774    22457999999975   


Q ss_pred             -----------cccccccCCHHHHHHhcCCCHHHHHHHhccCC-CCcEEEccchhhhccCCCCC----------------
Q 040805          276 -----------PESFLRAFSWEILESAFKTKRDSLERVLFQQD-QGAMVKASKQQIRALSRSQE----------------  327 (540)
Q Consensus       276 -----------~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~-~g~Iv~~~~e~l~~l~~~~~----------------  327 (540)
                                 +.|||+||++++|++||||+.+++++|+++++ .|.||+++. .++.++|..+                
T Consensus       209 ~~~~~~~~~~~~~nifsGF~~e~La~Afnv~~e~~~klq~~~d~rG~IVrv~~-~l~~~~P~~~~~~e~~~~~~~~~~~~  287 (493)
T PLN00212        209 QVYGRSIEQHSGQNIFSGFSTELLSEALGINAQVAKRLQSQNDQRGEIIRVKN-GLQLLQPTLTQQQEQAQQQQQRLYQQ  287 (493)
T ss_pred             ccccccccccccCchhhcCCHHHHHHHHCCCHHHHHHHhccccCCccEEEECC-CcccCCCchhhhhHHHHhhhhccccc
Confidence                       35799999999999999999999999998875 599999975 4554444320                


Q ss_pred             ------CCCcCC-CCCCCC-ceeEcC------CCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccC
Q 040805          328 ------GPSIWP-FAGESR-GTFNLF------GKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNS  393 (540)
Q Consensus       328 ------~~s~~~-~~~~~~-~~fnL~------~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~  393 (540)
                            ..+.|. .+..++ -+++|.      +..|+|++.+|+++++++.+||+|+.++|++.+++|.||||++||||+
T Consensus       288 ~~~~~~~~~~~~~ngleEt~c~~rlr~Ni~~p~~ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~  367 (493)
T PLN00212        288 VQYQQSQQTSGRWNGLDENFCTIKVRLNIENPSRADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNV  367 (493)
T ss_pred             chhhhccccccCCCCccccccccccccccCCccccCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecC
Confidence                  000011 111111 144444      346689999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805          394 RSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       394 ~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F  473 (540)
                      ||++|+||++|+|+++||++++.                     ++|+.+|++|||||||+||+|++.|+ ++++.|++|
T Consensus       368 nA~eI~yV~rG~g~vqvV~~~g~---------------------~vf~~~L~~GdvfVVPqg~~v~~~A~-~egfe~v~F  425 (493)
T PLN00212        368 NAHSVVYITQGRARVQVVSNNGK---------------------TVFNGVLRPGQLLIIPQHYAVLKKAE-REGCQYIAF  425 (493)
T ss_pred             CCCEEEEEeecceEEEEEcCCCC---------------------EEEEEEEcCCCEEEECCCCeEEEeec-CCceEEEEe
Confidence            99999999999999999998763                     68999999999999999999999887 678999999


Q ss_pred             EecCCCCccccccccccccccCCHHHHHHHcCCCHHHHHHhhcCCCCceEEcCCC
Q 040805          474 EINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPS  528 (540)
Q Consensus       474 ~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~  528 (540)
                      ++++ ++..++|||++|+|++||.+||++||+++.++|++|+.++++++|+.+|.
T Consensus       426 ~tna-~~~~s~laG~~Sv~~alp~eVla~Af~is~eea~~lk~n~~~e~~~~~p~  479 (493)
T PLN00212        426 KTNA-NAMVSHIAGKNSIFRALPVDVIANAYRISREEARRLKNNRGDELGAFTPR  479 (493)
T ss_pred             ecCC-CccccccccHHHHHHhCCHHHHHHHcCCCHHHHHHHHhcccCceeecCCC
Confidence            9998 67899999999999999999999999999999999999987776666664

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=100.00  E-value=2.6e-43  Score=370.70  Aligned_cols=314  Identities=12%  Similarity=0.142  Sum_probs=251.5

Q ss_pred             cCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecC-CceEEeeCCCcEEEE
Q 040805          155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIREN-NRESYNVKRGDIIRV  233 (540)
Q Consensus       155 ~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~-~~~~~~l~~GDv~~i  233 (540)
                      ..+|+++.++  ..+.|.|.+++.+++   ++.||++..||||.+.||+||++|++++++++++ ..+.+.|++||+|+|
T Consensus        48 ~~gG~~~~~~--~~~lP~l~~ls~~~~---~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~f  122 (367)
T TIGR03404        48 ENGGWAREVT--VRDLPISTAIAGVNM---RLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYF  122 (367)
T ss_pred             ccCceEEEeC--hhhccCcccccceEE---EEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEE
Confidence            3799999984  333455555555555   9999999999999999999999999999999864 445568999999999


Q ss_pred             CCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEE
Q 040805          234 PSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVK  313 (540)
Q Consensus       234 PaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~  313 (540)
                      |+|.+|++.|.+  +.+.++.+|++..... ...+.+      .++|+++|++||+++|+++.+++++|++.+  -+|+.
T Consensus       123 P~g~~H~~~n~~--~~~~~l~vf~~~~f~~-~~~~~~------~~~l~~~p~~Vla~~f~l~~~~~~~l~~~~--~~~~~  191 (367)
T TIGR03404       123 PPGIPHSLQGLD--EGCEFLLVFDDGNFSE-DGTFLV------TDWLAHTPKDVLAKNFGVPESAFDNLPLKE--LYIFP  191 (367)
T ss_pred             CCCCeEEEEECC--CCeEEEEEeCCcccCC-cceeeH------HHHHHhCCHHHHHHHhCCCHHHHHhccccC--ceEEe
Confidence            999999999985  3578888887655322 123343      268888999999999999999999999776  48886


Q ss_pred             cc-chhhhccCCCCCCCCcCCCCCCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCccccccc
Q 040805          314 AS-KQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYN  392 (540)
Q Consensus       314 ~~-~e~l~~l~~~~~~~s~~~~~~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h  392 (540)
                      +. +..+..-...    + ........+.|++.+..| +...+|+++.+++.+||+++  +++++.++|.||+|+.||||
T Consensus       192 ~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~p-~~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H  263 (367)
T TIGR03404       192 GTVPGPLDQEAVT----G-PAGEVPGPFTYHLSEQKP-KQVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWH  263 (367)
T ss_pred             cCCCCccccccCc----C-CCCCCCccEEEEhhhCCc-eecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeC
Confidence            62 2222111110    1 111223346789999999 67889999999999999988  59999999999999999999


Q ss_pred             CCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEE
Q 040805          393 SRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVC  472 (540)
Q Consensus       393 ~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~  472 (540)
                      ++++||.||++|+++++|+++++.                      .....|++||+++||+|++|++.|.|+++++|++
T Consensus       264 ~~~~E~~yvl~G~~~~~v~d~~g~----------------------~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~  321 (367)
T TIGR03404       264 PNADEWQYFIQGQARMTVFAAGGN----------------------ARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLE  321 (367)
T ss_pred             cCCCeEEEEEEEEEEEEEEecCCc----------------------EEEEEECCCCEEEECCCCeEEEEECCCCCEEEEE
Confidence            999999999999999999998762                      2335799999999999999999999999999998


Q ss_pred             EEecCCCCccccccccccccccCCHHHHHHHcCCCHHHHHHhhcCC
Q 040805          473 FEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQ  518 (540)
Q Consensus       473 F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e~v~kl~~~q  518 (540)
                      +..+. .+...-|   +++|+.+|++||+++|+++.+.+++|++.+
T Consensus       322 if~s~-~~~~i~l---~~~l~~~p~~vl~~~~~~~~~~~~~l~~~~  363 (367)
T TIGR03404       322 VFKAD-RFADVSL---NQWLALTPPQLVAAHLNLDDEVIDSLKKEK  363 (367)
T ss_pred             EECCC-CCceeEH---HHHHhhCCHHHHHHHhCcCHHHHHhccccC
Confidence            75444 3333334   588999999999999999999999998764

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>PLN00212 glutelin; Provisional

Probab=99.94  E-value=4.2e-26  Score=246.11  Aligned_cols=180  Identities=17%  Similarity=0.233  Sum_probs=141.2

Q ss_pred             EcCCCCC--cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCC--
Q 040805          343 NLFGKRP--SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRS--  418 (540)
Q Consensus       343 nL~~~~P--~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~--  418 (540)
                      +|....|  .+.+++|.+..|| .+.++|+|+|+++.+++|.|+||++|||| ||++|+||++|+|++++|.|+|+.-  
T Consensus        48 ~l~a~ep~~ri~se~G~~E~~~-~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~  125 (493)
T PLN00212         48 RLQAFEPLRKVRSEAGVTEYFD-EKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQ  125 (493)
T ss_pred             ccccCCCchhhcccCceeeecC-CCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhh
Confidence            3444455  5788999888888 66899999999999999999999999997 9999999999999999999988631  


Q ss_pred             cccc---cccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEE-EEecCC------CCcccccccc
Q 040805          419 SSER---RHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVC-FEINAE------GNIRFPLAGR  488 (540)
Q Consensus       419 ~~~~---~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~-F~~~a~------~~~~~~LAG~  488 (540)
                      +.+.   ...+++.++.. +..+++ .+|++||||+||+|++||++|+|++++++|+ +++++.      ++..|||||+
T Consensus       126 ~~~~~~~~~~~~~~~~~~-d~hqkv-~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~  203 (493)
T PLN00212        126 QQFQQFLTEGQSQSQKFR-DEHQKI-HQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGN  203 (493)
T ss_pred             hhcccccccccccccccc-cccccc-eEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCC
Confidence            1100   00001111122 233555 6999999999999999999999999987765 666653      2358999996


Q ss_pred             -----------------ccccccCCHHHHHHHcCCCHHHHHHhhcCCCC-ceEEcC
Q 040805          489 -----------------NKIFKVMESEAKELAFNTRADEVERVFGNQDQ-DWFFKG  526 (540)
Q Consensus       489 -----------------~svl~~~~~evla~AF~vs~e~v~kl~~~q~e-~~f~~~  526 (540)
                                       .|||++|++++|+.||||+.+++++|+..++. ..|+.-
T Consensus       204 ~~~~~~~~~~~~~~~~~~nifsGF~~e~La~Afnv~~e~~~klq~~~d~rG~IVrv  259 (493)
T PLN00212        204 NNRQQQVYGRSIEQHSGQNIFSGFSTELLSEALGINAQVAKRLQSQNDQRGEIIRV  259 (493)
T ss_pred             CccccccccccccccccCchhhcCCHHHHHHHHCCCHHHHHHHhccccCCccEEEE
Confidence                             36999999999999999999999999977643 566654

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=99.94  E-value=2.6e-26  Score=211.92  Aligned_cols=139  Identities=31%  Similarity=0.524  Sum_probs=115.4

Q ss_pred             eEcCCCCCcccCCCceEEEecCCCCCCCccc-cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcc
Q 040805          342 FNLFGKRPSHSNNFGELFEADSNDFRPLEDL-DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSS  420 (540)
Q Consensus       342 fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l-~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~  420 (540)
                      |||.+.+|+|++++|+++.+++.++|+|..+ ++++.++.|+||||++|||| +|++|+||++|+|+++||+|++++.  
T Consensus         1 fn~~~~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~--   77 (144)
T PF00190_consen    1 FNLREPRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQE--   77 (144)
T ss_dssp             EETCSSSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSS--
T ss_pred             CCCCCCCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccc--
Confidence            7999999999999999999999999965554 66677778899999999999 9999999999999999999987410  


Q ss_pred             cccccCCCccccCCccceEEee--eeCCCcEEEECCCCeEEEEecC-CCCEEEEEEEecCCCCccccccccccccccCCH
Q 040805          421 ERRHQGSSTREEGSATYHKVSS--RIRTDSAYIVPAGHPVVTVASQ-NNNLEVVCFEINAEGNIRFPLAGRNKIFKVMES  497 (540)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~--~l~~GDV~vVPaG~~h~~~n~~-~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~  497 (540)
                                     ..+.+..  +|++|||++||+|++||++|++ ++.+.+++|++++..+.             +|+
T Consensus        78 ---------------~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~-------------l~~  129 (144)
T PF00190_consen   78 ---------------EFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ-------------LPP  129 (144)
T ss_dssp             ---------------EEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE-------------SSH
T ss_pred             ---------------cceeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc-------------CCc
Confidence                           0123333  5999999999999999999998 56677888988864332             899


Q ss_pred             HHHHHHcCCCHHHH
Q 040805          498 EAKELAFNTRADEV  511 (540)
Q Consensus       498 evla~AF~vs~e~v  511 (540)
                      +|++++|+++.+++
T Consensus       130 ~v~~~~F~~~~~~~  143 (144)
T PF00190_consen  130 EVLAKAFFLSGEEV  143 (144)
T ss_dssp             HHHHHHEESSHHHH
T ss_pred             HHHHHhcCCCcCcC
Confidence            99999999999875

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>smart00835 Cupin_1 Cupin

Probab=99.88  E-value=7.6e-22  Score=182.62  Aligned_cols=142  Identities=38%  Similarity=0.634  Sum_probs=129.6

Q ss_pred             CCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCC
Q 040805          348 RPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGS  427 (540)
Q Consensus       348 ~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~  427 (540)
                      +|.|+|++|++..+++.++|.+++.++.+..++|.||++..||||+++.++.||++|++.+.+.++.+.           
T Consensus         4 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~-----------   72 (146)
T smart00835        4 RPDFSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGN-----------   72 (146)
T ss_pred             cccccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCC-----------
Confidence            457899999999999999999999999999999999999999999999999999999999999887542           


Q ss_pred             CccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCCHHHHHHHcCCC
Q 040805          428 STREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTR  507 (540)
Q Consensus       428 ~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs  507 (540)
                                ++....|++||+++||+|.+|++.|.+++++.+++|.+++ .+.+++++|.+++|.+|+++|++.+|+++
T Consensus        73 ----------~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (146)
T smart00835       73 ----------KVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVAFNTND-PNRRFFLAGRNSVLRGLPPEVLAAAFGVS  141 (146)
T ss_pred             ----------eEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEEEecCC-CCceeEeecccchhhcCCHHHHHHHhCcC
Confidence                      4556789999999999999999999888999999987765 56788899989999999999999999999


Q ss_pred             HHHH
Q 040805          508 ADEV  511 (540)
Q Consensus       508 ~e~v  511 (540)
                      ++++
T Consensus       142 ~~~~  145 (146)
T smart00835      142 AEEV  145 (146)
T ss_pred             hHHc
Confidence            9875

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=99.87  E-value=1.1e-21  Score=181.20  Aligned_cols=131  Identities=24%  Similarity=0.409  Sum_probs=104.8

Q ss_pred             cccceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCC------ce
Q 040805          148 EESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENN------RE  221 (540)
Q Consensus       148 ~f~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~------~~  221 (540)
                      ....+|++++|+++.|+..  +.|.+.++..+++.++.|+||++++||||+|++|+||++|+|++++|.+++      ..
T Consensus         5 ~~~~~~~~~~G~~~~~~~~--~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~   82 (144)
T PF00190_consen    5 EPRPRVSNEGGRIREADSE--DFPILLGLNGVAVRRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDF   82 (144)
T ss_dssp             SSSEEEEETTEEEEEESTT--TSHCHHHHTTEEEEEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEE
T ss_pred             CCCCcccCCCEEEEEEChh--hCcceecccceEEEeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceee
Confidence            4567999999999999643  336566777788888899999999999999999999999999999999986      24


Q ss_pred             EEe--eCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHH
Q 040805          222 SYN--VKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSL  299 (540)
Q Consensus       222 ~~~--l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v  299 (540)
                      ..+  |++||||+||+|++||++|++++ +...+.++++.+.+               +.   +|++||+++|+++.+++
T Consensus        83 ~~~v~l~~Gdv~~vP~G~~h~~~n~~~~-~~~~~~~f~~~~~~---------------~~---l~~~v~~~~F~~~~~~~  143 (144)
T PF00190_consen   83 SQKVRLKAGDVFVVPAGHPHWIINDGDD-EALVLIIFDTNNPP---------------NQ---LPPEVLAKAFFLSGEEV  143 (144)
T ss_dssp             EEEEEEETTEEEEE-TT-EEEEEECSSS-SEEEEEEEEESSTT---------------GE---SSHHHHHHHEESSHHHH
T ss_pred             eceeeeecccceeeccceeEEEEcCCCC-CCEEEEEEECCCCc---------------cc---CCcHHHHHhcCCCcCcC
Confidence            455  99999999999999999999844 45555566444322               11   89999999999998864

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=99.81  E-value=6.3e-19  Score=186.15  Aligned_cols=154  Identities=14%  Similarity=0.159  Sum_probs=125.6

Q ss_pred             CceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCC
Q 040805          339 RGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRS  418 (540)
Q Consensus       339 ~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~  418 (540)
                      ..+|++..+++.   .+|++++++..+||+|+.  |++.+++|.|||++.|||| .+.||+||++|++++++++.++   
T Consensus        37 ~~~~~~~~~~~~---~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH-~~~E~~yVl~G~~~v~~~d~~g---  107 (367)
T TIGR03404        37 KWSFSDSHNRLE---NGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWH-KEAEWAYVLYGSCRITAVDENG---  107 (367)
T ss_pred             eeeeccccCccc---cCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccC-CCceEEEEEeeEEEEEEEcCCC---
Confidence            357877777753   789999999999999985  8999999999999999999 5679999999999999998765   


Q ss_pred             cccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEE-EEecC-CCCccccccccccccccCC
Q 040805          419 SSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVC-FEINA-EGNIRFPLAGRNKIFKVME  496 (540)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~-F~~~a-~~~~~~~LAG~~svl~~~~  496 (540)
                                         +.+...|++||+++||+|.+|++.|.+ ++.+++. |+... ..+..+.+   +++|+.+|
T Consensus       108 -------------------~~~~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~---~~~l~~~p  164 (367)
T TIGR03404       108 -------------------RNYIDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLV---TDWLAHTP  164 (367)
T ss_pred             -------------------cEEEeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeH---HHHHHhCC
Confidence                               456568999999999999999999984 5667655 53321 01112222   46787899


Q ss_pred             HHHHHHHcCCCHHHHHHhhcCCCCceEEcC
Q 040805          497 SEAKELAFNTRADEVERVFGNQDQDWFFKG  526 (540)
Q Consensus       497 ~evla~AF~vs~e~v~kl~~~q~e~~f~~~  526 (540)
                      .+||+++|+++.+++++|++  ++.+|+++
T Consensus       165 ~~Vla~~f~l~~~~~~~l~~--~~~~~~~~  192 (367)
T TIGR03404       165 KDVLAKNFGVPESAFDNLPL--KELYIFPG  192 (367)
T ss_pred             HHHHHHHhCCCHHHHHhccc--cCceEEec
Confidence            99999999999999999986  45788866

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>smart00835 Cupin_1 Cupin

Probab=99.78  E-value=5.3e-18  Score=156.95  Aligned_cols=137  Identities=26%  Similarity=0.432  Sum_probs=113.3

Q ss_pred             eeecCCceEEEeccCccccccccccccceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCC--ceEEeeCCC
Q 040805          152 RVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENN--RESYNVKRG  228 (540)
Q Consensus       152 ~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~--~~~~~l~~G  228 (540)
                      .|++++|.+++|...+  .|.+++. .+.+..+++.||+...|||| ++++++||++|++.+.+..+++  ..++.+++|
T Consensus         6 ~~~~~~g~~~~~~~~~--~~~~~~~-~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~G   82 (146)
T smart00835        6 DFSNEGGRLREADPTN--FPALNGL-GISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREG   82 (146)
T ss_pred             cccCCCceEEEeCchh--CcccccC-ceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCC
Confidence            5899999999996432  3677643 46677779999999999997 5899999999999999877643  347899999


Q ss_pred             cEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHH
Q 040805          229 DIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSL  299 (540)
Q Consensus       229 Dv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v  299 (540)
                      |+++||+|+.||+.|.+ +++++++++.  +++|.  ..||++|..   ++|++|+++||+++|+++.+++
T Consensus        83 D~~~ip~g~~H~~~n~~-~~~~~~l~~~--~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  145 (146)
T smart00835       83 DVFVVPQGHPHFQVNSG-DENLEFVAFN--TNDPN--RRFFLAGRN---SVLRGLPPEVLAAAFGVSAEEV  145 (146)
T ss_pred             CEEEECCCCEEEEEcCC-CCCEEEEEEe--cCCCC--ceeEeeccc---chhhcCCHHHHHHHhCcChHHc
Confidence            99999999999999987 5789998643  34443  468888864   8999999999999999999875

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=99.71  E-value=6.3e-17  Score=155.95  Aligned_cols=192  Identities=15%  Similarity=0.122  Sum_probs=144.1

Q ss_pred             CHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCC-CCCCceeEcCCCCCcccCCCceEEEec
Q 040805          284 SWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFA-GESRGTFNLFGKRPSHSNNFGELFEAD  362 (540)
Q Consensus       284 ~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~-~~~~~~fnL~~~~P~~~n~~G~~~~~~  362 (540)
                      +..++.+.|+++.+++..+..++.  +|.+.+..+  .+....++.+  ... .+....|.|....|..+  +|.+....
T Consensus         2 ~~~~~~~~~~vd~~~~~~~p~~~~--~i~~~~~~~--~l~~d~~~~~--~~~~~~~~~~yel~~~~~~~~--~g~L~~~~   73 (209)
T COG2140           2 PKLFEPKNFGVDVRTGKLLPLKQV--YIKRGSDPG--GLYADEDAYS--MLRKKEDDFVYELLESEPGER--GGDLRLDV   73 (209)
T ss_pred             CceeccccccchhhhhhcCCccce--eEEeccCCc--ccccCHHHHH--HhcCCCCceEEEeeccccccc--CCeEEEEe
Confidence            466788999999999888877763  676654321  2211110101  111 23456889999999775  99999888


Q ss_pred             CCCCCCCccccceEEEEEEcCCCcccccccCCCcE--EEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEE
Q 040805          363 SNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTK--VAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKV  440 (540)
Q Consensus       363 ~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~e--i~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (540)
                      ...+|.-     +.+.+.++||+|++.||||+|++  |.||++|+|.+.|..+++                      +..
T Consensus        74 t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G----------------------~~~  126 (209)
T COG2140          74 TRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEG----------------------EAR  126 (209)
T ss_pred             eccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCC----------------------cEE
Confidence            8888864     56778999999999999999999  999999999999999986                      355


Q ss_pred             eeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCCHHHHHHHcCCCHHHHHHh
Q 040805          441 SSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERV  514 (540)
Q Consensus       441 ~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e~v~kl  514 (540)
                      ..++++||+++||.++.|+++|+|+++|+|+...-++ ....   +....++.+++..+++..|+.+....+.+
T Consensus       127 v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~-~~~~---y~~~~~~~~~~~~~~~~~~~~~~~~~D~p  196 (209)
T COG2140         127 VIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPAD-AGQD---YDLIAWLGGMPPVLVENGLNKNPKYVDVP  196 (209)
T ss_pred             EEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCC-CCce---eeeeehhccCCceeeccccccCcccccCc
Confidence            6799999999999999999999999999987643332 1222   22245667788999999998877655544

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=99.56  E-value=9.1e-13  Score=133.51  Aligned_cols=194  Identities=14%  Similarity=0.173  Sum_probs=129.5

Q ss_pred             ccceeeeeeeCCCccc-ccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEE
Q 040805          177 EKYRLGILIANPQTFV-TPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK  254 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~-~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~  254 (540)
                      ..+-+-++++.||+-. .|+++ ..++++||++|++.+.+    +..++.|++||.+++|+|..|.+.|.+ +++++++.
T Consensus        56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~----~g~~~~L~~Gd~~y~pa~~~H~~~N~~-~~~a~~l~  130 (260)
T TIGR03214        56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTA----EGETHELREGGYAYLPPGSKWTLANAQ-AEDARFFL  130 (260)
T ss_pred             CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCCEEEEECC-CCCEEEEE
Confidence            4455566799998754 34444 45899999999999887    567889999999999999999999987 56898887


Q ss_pred             EeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCC
Q 040805          255 FIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPF  334 (540)
Q Consensus       255 i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~  334 (540)
                      +-.....        +.|          +                      .....|| .+..+   +.+.         
T Consensus       131 v~k~y~~--------~~g----------~----------------------~~~~~vv-g~~~d---v~~~---------  157 (260)
T TIGR03214       131 YKKRYQP--------VEG----------L----------------------HAPELVV-GNEKD---IEPE---------  157 (260)
T ss_pred             EEeeeEE--------cCC----------C----------------------CCCCeee-cCHHH---CCcc---------
Confidence            6532211        111          0                      0000111 11111   1110         


Q ss_pred             CCCCCceeEcCCCCCcccCCCc-eEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcC
Q 040805          335 AGESRGTFNLFGKRPSHSNNFG-ELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACP  413 (540)
Q Consensus       335 ~~~~~~~fnL~~~~P~~~n~~G-~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p  413 (540)
                                    | +....| .++.+-+.++   .. ++.+..++|.||+-...|.|-.-.+..||++|+|.+.+   
T Consensus       158 --------------~-~~g~~~~~~~~llp~~~---~~-~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~---  215 (260)
T TIGR03214       158 --------------P-YEGMDDVILTTLLPKEL---AF-DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNL---  215 (260)
T ss_pred             --------------c-cCCCCcEEEEEeCchhc---CC-CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEE---
Confidence                          0 111111 2323322222   22 57788899999999985433334467799999999964   


Q ss_pred             CCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEE
Q 040805          414 HVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFE  474 (540)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~  474 (540)
                      ++                      +.  ..|.+||+++||+|.+||+.|.|++++.+|-..
T Consensus       216 ~g----------------------~~--~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~yk  252 (260)
T TIGR03214       216 DN----------------------NW--VPVEAGDYIWMGAYCPQACYAGGRGEFRYLLYK  252 (260)
T ss_pred             CC----------------------EE--EEecCCCEEEECCCCCEEEEecCCCcEEEEEEc
Confidence            22                      22  379999999999999999999999999998773

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>PRK11171 hypothetical protein; Provisional

Probab=99.52  E-value=3e-12  Score=130.21  Aligned_cols=194  Identities=15%  Similarity=0.167  Sum_probs=131.3

Q ss_pred             ceeeeeeeCCCccccccc-c-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          179 YRLGILIANPQTFVTPTH-L-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~Ph~-~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      +-+.++++.||+-...++ + ..++++||++|++.+.+    +..++.|++||.+++|++.+|.+.|.+ +++++++++.
T Consensus        61 ~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~----~g~~~~L~~GDsi~~p~~~~H~~~N~g-~~~a~~l~v~  135 (266)
T PRK11171         61 FSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL----EGKTHALSEGGYAYLPPGSDWTLRNAG-AEDARFHWIR  135 (266)
T ss_pred             EEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCCEEEEECC-CCCEEEEEEE
Confidence            344556999998654444 3 46899999999999987    566899999999999999999999998 5689998876


Q ss_pred             ecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCC
Q 040805          257 KSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAG  336 (540)
Q Consensus       257 ~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~  336 (540)
                      ......        .          ++.         .+             ..||.-. .++.   +.           
T Consensus       136 ~~y~~~--------~----------~~~---------~p-------------~~~~~~~-~d~~---~~-----------  160 (266)
T PRK11171        136 KRYEPV--------E----------GHE---------AP-------------EAFVGNE-SDIE---PI-----------  160 (266)
T ss_pred             cCCeEc--------C----------CCC---------CC-------------CeEecch-hccc---cc-----------
Confidence            322210        0          000         01             0122110 0110   00           


Q ss_pred             CCCceeEcCCCCCcccCCCc-eEE--EecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcC
Q 040805          337 ESRGTFNLFGKRPSHSNNFG-ELF--EADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACP  413 (540)
Q Consensus       337 ~~~~~fnL~~~~P~~~n~~G-~~~--~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p  413 (540)
                                  + +...-| .+.  .+.+.+.    ..++.+..++|.||+-...|-|....+.+||++|++.+.+   
T Consensus       161 ------------~-~~g~~g~~~~~~~~~p~~~----~~~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~---  220 (266)
T PRK11171        161 ------------P-MPGTDGVWATTRLVDPEDL----RFDMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL---  220 (266)
T ss_pred             ------------c-cCCCCCeEEEEEeeCchhc----CCCcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE---
Confidence                        0 111112 121  2222111    2246788999999999988534567799999999999974   


Q ss_pred             CCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEec
Q 040805          414 HVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEIN  476 (540)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~  476 (540)
                      ++                      +.  ..|.+||++.+|++.+|++.|.+++++.++.+..-
T Consensus       221 ~~----------------------~~--~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k~~  259 (266)
T PRK11171        221 NN----------------------DW--VEVEAGDFIWMRAYCPQACYAGGPGPFRYLLYKDV  259 (266)
T ss_pred             CC----------------------EE--EEeCCCCEEEECCCCCEEEECCCCCcEEEEEEccc
Confidence            22                      22  47999999999999999999999999999998433

>PF04702 Vicilin_N: Vicilin N terminal region; InterPro: IPR006792 This region is found in plant seed storage proteins, N-terminal to the Cupin domain (IPR006045 from INTERPRO)

Probab=99.29  E-value=1.1e-11  Score=112.05  Aligned_cols=81  Identities=38%  Similarity=0.966  Sum_probs=61.4

Q ss_pred             cCCch--hHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhccCCCCCCCCCCchHHHHHHHHHH
Q 040805           25 TKDPE--LKQCKHQCRARQQYDEKQKEQCARTCEEYYKEKEQRERHREGESEEEKEWGGRHEWMNPGEPAEKHLRQCQRE  102 (540)
Q Consensus        25 ~~dp~--~~~c~~~c~~~~~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~c~~~  102 (540)
                      .+||.  |.+|.++|.++.+ +.+++++|..+|+..|++++++++.+                  ..|| .++|..|..+
T Consensus         6 ~~DPqq~y~qCq~rC~~q~~-g~r~q~qC~~RCE~q~~E~q~~~r~r------------------~~dP-qr~ye~Cqq~   65 (147)
T PF04702_consen    6 PRDPQQQYEQCQRRCQRQER-GQRQQQQCQQRCEEQYEEEQRRQRGR------------------EEDP-QRRYEQCQQR   65 (147)
T ss_pred             ccChHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHhhhccCC------------------ccCH-HHHHHHHHHH
Confidence            47995  9999999999998 99999999999999999988776322                  1356 6666666666


Q ss_pred             HhhhcccchhhHHHHHHHHHHHHhh
Q 040805          103 CDRQEEGGQQRALCRFRCQEKYRRE  127 (540)
Q Consensus       103 c~~~~~~~~q~~~c~~rc~~~~~~~  127 (540)
                      |+++.+  ++.++|.+||+.+|+++
T Consensus        66 Cqrq~~--r~~~~C~qrCe~qye~e   88 (147)
T PF04702_consen   66 CQRQEP--RQQQQCQQRCEEQYEKE   88 (147)
T ss_pred             HHHhch--HHhHHHHHHHHHHHHHH
Confidence            666663  56666666666666644

In Macadamia integrifolia (Macadamia nut) (Q9SPL4 from SWISSPROT), this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro [].

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=99.27  E-value=1.7e-11  Score=118.62  Aligned_cols=127  Identities=19%  Similarity=0.328  Sum_probs=99.6

Q ss_pred             CceEEEeccCccccccccccccceeeeeeeCCCcccccccc-CCCe--EEEEEeeEEEEEEEecC-CceEEeeCCCcEEE
Q 040805          157 HGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHL-DADA--VFFVSWGQGTITVIREN-NRESYNVKRGDIIR  232 (540)
Q Consensus       157 ~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~-~A~e--i~yV~~G~g~ig~V~~~-~~~~~~l~~GDv~~  232 (540)
                      +|.++.-     .++.++|.   --+++.+.||++..-||| ++++  |+||++|+|.+.+-.++ ...+..+++||+++
T Consensus        66 ~g~L~~~-----~t~~~pGs---~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iy  137 (209)
T COG2140          66 GGDLRLD-----VTRIFPGS---AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIY  137 (209)
T ss_pred             CCeEEEE-----eeccCCCc---cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEE
Confidence            8888884     24677875   245568999999999987 7887  99999999999998876 44688999999999


Q ss_pred             ECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHH
Q 040805          233 VPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERV  302 (540)
Q Consensus       233 iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l  302 (540)
                      ||+|..|++.|+| +++|+++.++. .+..   ..+.+      ..++.+.+.-+++..|+.+....+.+
T Consensus       138 VPp~~gH~t~N~G-d~pLvf~~v~~-~~~~---~~y~~------~~~~~~~~~~~~~~~~~~~~~~~D~p  196 (209)
T COG2140         138 VPPGYGHYTINTG-DEPLVFLNVYP-ADAG---QDYDL------IAWLGGMPPVLVENGLNKNPKYVDVP  196 (209)
T ss_pred             eCCCcceEeecCC-CCCEEEEEEEe-CCCC---ceeee------eehhccCCceeeccccccCcccccCc
Confidence            9999999999999 57999999883 3322   22222      25777888888888887776555543

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=99.22  E-value=8.3e-11  Score=106.71  Aligned_cols=80  Identities=25%  Similarity=0.460  Sum_probs=70.2

Q ss_pred             ccceeeeeeeCCCccc-cccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805          177 EKYRLGILIANPQTFV-TPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~-~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i  255 (540)
                      ..++++.+.++||+-. +++|++.+|++||++|+|.+.+    +...+.|++||+++||+|++|++.|+| +.+|.++.+
T Consensus        34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~----~~~~~~v~~gd~~~iP~g~~H~~~N~G-~~~L~liei  108 (127)
T COG0662          34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI----GGEEVEVKAGDSVYIPAGTPHRVRNTG-KIPLVLIEV  108 (127)
T ss_pred             CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE----CCEEEEecCCCEEEECCCCcEEEEcCC-CcceEEEEE
Confidence            4678888899999875 6666679999999999999998    678899999999999999999999999 579999998


Q ss_pred             eecCCC
Q 040805          256 IKSINL  261 (540)
Q Consensus       256 ~~~~~~  261 (540)
                      ..+.+.
T Consensus       109 ~~p~~~  114 (127)
T COG0662         109 QSPPYL  114 (127)
T ss_pred             ecCCcC
Confidence            866554

>PF04702 Vicilin_N: Vicilin N terminal region; InterPro: IPR006792 This region is found in plant seed storage proteins, N-terminal to the Cupin domain (IPR006045 from INTERPRO)

Probab=99.14  E-value=1.7e-10  Score=104.38  Aligned_cols=78  Identities=35%  Similarity=0.922  Sum_probs=68.3

Q ss_pred             CCch--hHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhccCCCCCCCCCCchHHHHHHHHHHH
Q 040805           26 KDPE--LKQCKHQCRARQQYDEKQKEQCARTCEEYYKEKEQRERHREGESEEEKEWGGRHEWMNPGEPAEKHLRQCQREC  103 (540)
Q Consensus        26 ~dp~--~~~c~~~c~~~~~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~c~~~c  103 (540)
                      .||.  |+.|...|+.+.   .+++.+|.++|+..|.+.+++                         | .++|..|+++|
T Consensus        53 ~dPqr~ye~Cqq~Cqrq~---~r~~~~C~qrCe~qye~eq~~-------------------------p-qkqy~eCqr~C  103 (147)
T PF04702_consen   53 EDPQRRYEQCQQRCQRQE---PRQQQQCQQRCEEQYEKEQQQ-------------------------P-QKQYEECQRRC  103 (147)
T ss_pred             cCHHHHHHHHHHHHHHhc---hHHhHHHHHHHHHHHHHHHhh-------------------------H-HHHHHHHHHHH
Confidence            5894  999999999986   588999999999999886433                         3 89999999999


Q ss_pred             hhhcccchhhHHHHHHHHHHHHhhhccCC
Q 040805          104 DRQEEGGQQRALCRFRCQEKYRREKEGEG  132 (540)
Q Consensus       104 ~~~~~~~~q~~~c~~rc~~~~~~~~~~~~  132 (540)
                      +.+.-+.+.+.+|+.||+++|++++++++
T Consensus       104 e~QeQ~~r~qqQCq~rC~eqy~E~~~r~e  132 (147)
T PF04702_consen  104 EEQEQGPRRQQQCQRRCEEQYQEQQGRGE  132 (147)
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHhhcccc
Confidence            99987779999999999999999885554

In Macadamia integrifolia (Macadamia nut) (Q9SPL4 from SWISSPROT), this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro [].

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=99.12  E-value=3e-10  Score=91.15  Aligned_cols=69  Identities=29%  Similarity=0.484  Sum_probs=60.1

Q ss_pred             eeeeCCCccccccccCCC-eEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          183 ILIANPQTFVTPTHLDAD-AVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       183 ~~~l~Pggl~~Ph~~~A~-ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      ++++.||+...+|+|... +++||++|++.+.+    +...+.|++||++++|+|..|.+.|.+ +++++++.|+
T Consensus         2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~----~~~~~~l~~Gd~~~i~~~~~H~~~n~~-~~~~~~l~V~   71 (71)
T PF07883_consen    2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV----DGERVELKPGDAIYIPPGVPHQVRNPG-DEPARFLVVY   71 (71)
T ss_dssp             EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE----TTEEEEEETTEEEEEETTSEEEEEEES-SSEEEEEEEE
T ss_pred             EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE----ccEEeEccCCEEEEECCCCeEEEEECC-CCCEEEEEEC
Confidence            568899998778877666 99999999998885    455899999999999999999999998 5689998775

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=99.07  E-value=9.3e-09  Score=107.37  Aligned_cols=233  Identities=20%  Similarity=0.280  Sum_probs=129.2

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      .+...+-.|.||....||-|.+..|.||++|+|..++|   +.+.+.+++||+|++|.++.|...|.+ +++++++.++|
T Consensus        80 tl~a~~q~l~pGe~~~~HRht~sAl~~vveG~G~~t~V---~g~~~~~~~gD~~~tP~w~wH~H~n~~-d~~~~wld~lD  155 (335)
T TIGR02272        80 SLYAGLQLILPGEVAPSHRHTQSALRFIVEGKGAFTAV---DGERTTMHPGDFIITPSWTWHDHGNPG-DEPMIWLDGLD  155 (335)
T ss_pred             hHHhhhEEeCCCCCCCccccccceEEEEEEcCceEEEE---CCEEEeeeCCCEEEeCCCeeEecccCC-CCcEEEEecCC
Confidence            34455567899999999999999999999999965665   446799999999999999999999987 56777765442


Q ss_pred             cCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCc---CCC
Q 040805          258 SINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSI---WPF  334 (540)
Q Consensus       258 ~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~---~~~  334 (540)
                         .| .+ .++-+      +++-..+.+.-. .-.-+.+... ..    .+.++.+..     ....  ..+.   |++
T Consensus       156 ---~P-l~-~~l~~------~f~e~~~~~~~~-~~~~~~~~~~-~~----g~~l~P~~~-----~~~~--~~sP~~~ypw  211 (335)
T TIGR02272       156 ---IP-LV-QLFDC------SFAEGYPEDQQP-VTRPEGDSLA-RY----GHNMLPVRH-----KRSD--RSSPIFNYPY  211 (335)
T ss_pred             ---HH-HH-HhhCc------ceeccccccccc-cccCCcchhh-hc----ccCcccccc-----ccCC--CCCCceecCc
Confidence               12 01 00100      111111110000 0000000000 00    001111110     0000  0000   111


Q ss_pred             CCCCCceeEcCC--CCCcccCCCc-eEEEecCCCCCC-CccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEE
Q 040805          335 AGESRGTFNLFG--KRPSHSNNFG-ELFEADSNDFRP-LEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEI  410 (540)
Q Consensus       335 ~~~~~~~fnL~~--~~P~~~n~~G-~~~~~~~~~~p~-L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~v  410 (540)
                      .....   .|..  .........| .+..+|+.+-+- +..  |+.....|.+|....||=| .+..|.||++|+|++.|
T Consensus       212 ~~~~~---aL~~~~~~~~~~~~~g~~l~y~NP~TG~~~~pt--i~~~~q~L~~G~~t~~~r~-T~s~Vf~VieG~G~s~i  285 (335)
T TIGR02272       212 ERSRE---ALDDLTRTGEWDPWHGLKLRYVNPATGGYPMPT--IGAFIQLLPKGFRTATYRS-TDATVFCVVEGRGQVRI  285 (335)
T ss_pred             HHHHH---HHHHHHhccCCCCCceEEEEEeCCCCCCCcchh--HHHHHhccCCCCCCCCccc-cccEEEEEEeCeEEEEE
Confidence            00000   0100  0001112234 456667655443 333  4444566777777777764 56689999999999987


Q ss_pred             EcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805          411 ACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       411 v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F  473 (540)
                         ++                      +++  +.++||+|+||..+.|...|+  ++..++.|
T Consensus       286 ---g~----------------------~~~--~W~~gD~f~vPsW~~~~h~a~--~da~Lf~~  319 (335)
T TIGR02272       286 ---GD----------------------AVF--RFSPKDVFVVPSWHPVRFEAS--DDAVLFSF  319 (335)
T ss_pred             ---CC----------------------EEE--EecCCCEEEECCCCcEecccC--CCeEEEEe
Confidence               22                      344  799999999999988876665  34544455

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=98.92  E-value=8.2e-09  Score=93.62  Aligned_cols=76  Identities=11%  Similarity=0.150  Sum_probs=62.3

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEE-EEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTIT-VIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig-~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      ++.+..++++||+....|+++..+++||++|++++. +   ++.+++.|.+||++++|++.+|++.|+   +++++|+++
T Consensus        34 ~~~~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i---~~g~~~~L~aGD~i~~~~~~~H~~~N~---e~~~~l~v~  107 (125)
T PRK13290         34 GFSFHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDL---ATGEVHPIRPGTMYALDKHDRHYLRAG---EDMRLVCVF  107 (125)
T ss_pred             CEEEEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEc---CCCEEEEeCCCeEEEECCCCcEEEEcC---CCEEEEEEE
Confidence            344555699999977667666578999999999888 4   225789999999999999999999996   479999998


Q ss_pred             ecC
Q 040805          257 KSI  259 (540)
Q Consensus       257 ~~~  259 (540)
                      .|.
T Consensus       108 tP~  110 (125)
T PRK13290        108 NPP  110 (125)
T ss_pred             CCC
Confidence            543

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=98.91  E-value=1.7e-08  Score=97.78  Aligned_cols=85  Identities=11%  Similarity=0.182  Sum_probs=71.6

Q ss_pred             CCCccccceEEEEEEcCCCc------ccccccCCCc--EEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccce
Q 040805          367 RPLEDLDITVSYANISKGAM------AAPFYNSRST--KVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYH  438 (540)
Q Consensus       367 p~L~~l~isv~~~~L~pggm------~~PH~h~~A~--ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~  438 (540)
                      |.++.-++.+..+.|.||..      ..+|||++++  ||.||++|+|.+.+-...+                      .
T Consensus        61 ~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G----------------------~  118 (191)
T PRK04190         61 PEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEG----------------------E  118 (191)
T ss_pred             CCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCC----------------------c
Confidence            34556689999999999995      6679998665  9999999999999876644                      1


Q ss_pred             EEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805          439 KVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       439 ~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F  473 (540)
                      .....+++||+++||+|+.|.++|.++++|++++.
T Consensus       119 ~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~v  153 (191)
T PRK04190        119 ARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLAC  153 (191)
T ss_pred             EEEEEECCCCEEEECCCCcEEeEECCCCCEEEEEE
Confidence            23357999999999999999999999999999875

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=98.90  E-value=1e-08  Score=99.32  Aligned_cols=78  Identities=17%  Similarity=0.250  Sum_probs=66.1

Q ss_pred             cceeeeeeeCCCcc------cccccc---CCCeEEEEEeeEEEEEEEecC-CceEEeeCCCcEEEECCCCeEEEEeCCCC
Q 040805          178 KYRLGILIANPQTF------VTPTHL---DADAVFFVSWGQGTITVIREN-NRESYNVKRGDIIRVPSGNTFYVTNTDDD  247 (540)
Q Consensus       178 ~~rl~~~~l~Pggl------~~Ph~~---~A~ei~yV~~G~g~ig~V~~~-~~~~~~l~~GDv~~iPaG~~h~~~N~g~~  247 (540)
                      .+++++.+|.||.+      ..+|||   +.+|++||++|+|.+-+-+.. ....+.+++||+++||+|++|.+.|+| +
T Consensus        67 ~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G-~  145 (191)
T PRK04190         67 DLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNTG-D  145 (191)
T ss_pred             ceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEECC-C
Confidence            46788889999986      556887   345999999999998875443 345789999999999999999999998 6


Q ss_pred             ccEEEEEEe
Q 040805          248 EKLYIVKFI  256 (540)
Q Consensus       248 e~l~~v~i~  256 (540)
                      ++|++++++
T Consensus       146 epl~fl~v~  154 (191)
T PRK04190        146 EPLVFLACY  154 (191)
T ss_pred             CCEEEEEEE
Confidence            799999988

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=98.90  E-value=7.8e-09  Score=104.94  Aligned_cols=78  Identities=15%  Similarity=0.136  Sum_probs=67.0

Q ss_pred             cceeeeeeeCCCccccc-cccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          178 KYRLGILIANPQTFVTP-THLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~P-h~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      ++.+++++++||+.... |||..++.+||++|+|++.+    +.+.+.|.+||+++||+|.+||++|+| +++|++| +.
T Consensus       178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~----~g~~~~V~~GD~i~i~~~~~h~~~~~G-~~~~~~l-~y  251 (260)
T TIGR03214       178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNL----DNNWVPVEAGDYIWMGAYCPQACYAGG-RGEFRYL-LY  251 (260)
T ss_pred             CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEE----CCEEEEecCCCEEEECCCCCEEEEecC-CCcEEEE-EE
Confidence            56677799999999764 55678899999999999887    667899999999999999999999999 5799998 56


Q ss_pred             ecCCC
Q 040805          257 KSINL  261 (540)
Q Consensus       257 ~~~~~  261 (540)
                      ++.|.
T Consensus       252 kd~nr  256 (260)
T TIGR03214       252 KDMNR  256 (260)
T ss_pred             ccccC
Confidence            66775

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.90  E-value=7.2e-09  Score=93.98  Aligned_cols=77  Identities=18%  Similarity=0.355  Sum_probs=65.9

Q ss_pred             cccceeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEE
Q 040805          176 LEKYRLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK  254 (540)
Q Consensus       176 i~~~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~  254 (540)
                      -.++.+..++++||+....|.|+ .+..+||++|++++.+    ....+.+++||+++||+|++||+.|.++. ++.+|+
T Consensus        40 ~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~----~g~~~~l~~Gd~i~ip~g~~H~~~a~~~~-~~~~l~  114 (131)
T COG1917          40 GENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL----EGEKKELKAGDVIIIPPGVVHGLKAVEDE-PMVLLL  114 (131)
T ss_pred             CceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEe----cCCceEecCCCEEEECCCCeeeeccCCCC-ceeEEE
Confidence            35667778899999998888887 8899999999999998    36789999999999999999999998744 467777


Q ss_pred             Eee
Q 040805          255 FIK  257 (540)
Q Consensus       255 i~~  257 (540)
                      ++.
T Consensus       115 v~~  117 (131)
T COG1917         115 VFP  117 (131)
T ss_pred             Eee
Confidence            763

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.85  E-value=9.2e-09  Score=95.09  Aligned_cols=79  Identities=20%  Similarity=0.337  Sum_probs=68.1

Q ss_pred             ccccceeeeeeeCCCccc-ccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCC--CeEEEEeCCCCccE
Q 040805          175 GLEKYRLGILIANPQTFV-TPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSG--NTFYVTNTDDDEKL  250 (540)
Q Consensus       175 Gi~~~rl~~~~l~Pggl~-~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG--~~h~~~N~g~~e~l  250 (540)
                      |+..+.+.+..++||+.. ++||| .-+|++|||+|++++-+    +...+.|++||++.+|||  +.|.++|++ +..+
T Consensus        38 Gl~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~----d~~e~~lrpGD~~gFpAG~~~aHhliN~s-~~~~  112 (161)
T COG3837          38 GLKRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE----DGGETRLRPGDSAGFPAGVGNAHHLINRS-DVIL  112 (161)
T ss_pred             ChhhcccceEEeCCCCccccccccccCceEEEEEcCceEEEE----CCeeEEecCCceeeccCCCcceeEEeecC-CceE
Confidence            888888999999999864 78887 56899999999997766    556789999999999999  999999998 5689


Q ss_pred             EEEEEeec
Q 040805          251 YIVKFIKS  258 (540)
Q Consensus       251 ~~v~i~~~  258 (540)
                      +++++-+.
T Consensus       113 ~yL~vG~r  120 (161)
T COG3837         113 RYLEVGTR  120 (161)
T ss_pred             EEEEeccc
Confidence            99988743

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=98.79  E-value=3.4e-08  Score=79.16  Aligned_cols=69  Identities=13%  Similarity=0.296  Sum_probs=60.3

Q ss_pred             EEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCe
Q 040805          378 YANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHP  457 (540)
Q Consensus       378 ~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~  457 (540)
                      +++|.||+...+|+|+..+++.||++|++.+. +..                        +.  ..|++||+++||+|.+
T Consensus         2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~~------------------------~~--~~l~~Gd~~~i~~~~~   54 (71)
T PF07883_consen    2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VDG------------------------ER--VELKPGDAIYIPPGVP   54 (71)
T ss_dssp             EEEEETTEEEEEEEESSEEEEEEEEESEEEEE-ETT------------------------EE--EEEETTEEEEEETTSE
T ss_pred             EEEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ecc------------------------EE--eEccCCEEEEECCCCe
Confidence            57899999999999988889999999999998 432                        22  4799999999999999


Q ss_pred             EEEEecCCCCEEEEEE
Q 040805          458 VVTVASQNNNLEVVCF  473 (540)
Q Consensus       458 h~~~n~~~e~l~~v~F  473 (540)
                      |.+.|.+++++.++.+
T Consensus        55 H~~~n~~~~~~~~l~V   70 (71)
T PF07883_consen   55 HQVRNPGDEPARFLVV   70 (71)
T ss_dssp             EEEEEESSSEEEEEEE
T ss_pred             EEEEECCCCCEEEEEE
Confidence            9999998889888764

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.74  E-value=9.9e-08  Score=96.44  Aligned_cols=255  Identities=16%  Similarity=0.186  Sum_probs=150.4

Q ss_pred             eeecCCceEEEeccCccccccccccc----cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCC
Q 040805          152 RVTSQHGRVAFLPKFTQRSKLLRGLE----KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKR  227 (540)
Q Consensus       152 ~~~~e~G~i~~l~~f~~~~~~L~Gi~----~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~  227 (540)
                      ++..+.|.-|++  + -.+|-|+|-+    .+-.++=-|.||-..+.|-|+.+.+.||++|+|..++|+..   ...+++
T Consensus        64 li~~~~a~RRvi--~-L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHsqsAlRFvveG~Ga~T~VdGe---r~~M~~  137 (351)
T COG3435          64 LISAREAVRRVI--Y-LENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHNQSALRFVVEGKGAYTVVDGE---RTPMEA  137 (351)
T ss_pred             ccCcccceeEEE--E-ecCCCCCCcccccHHHHhhhheecCcccCCcccccccceEEEEeccceeEeecCc---eeeccC
Confidence            455666666666  2 3356677432    12234445789998777779999999999999999998643   467999


Q ss_pred             CcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCC
Q 040805          228 GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQD  307 (540)
Q Consensus       228 GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~  307 (540)
                      ||.|..|+++-|.-.|.| ++|++++--+|-   |  +-.++-+      .+|.-++.+...-.-...            
T Consensus       138 GDfilTP~w~wHdHgn~g-~eP~iWlDgLDi---p--lv~~l~~------gFfe~~~e~~q~v~~~~~------------  193 (351)
T COG3435         138 GDFILTPAWTWHDHGNEG-TEPCIWLDGLDI---P--LVNSLGA------GFFEEHPEEQQPVTRPEG------------  193 (351)
T ss_pred             CCEEEccCceeccCCCCC-CCceEEEcccch---H--HHHhhcc------cccccCchhcCcccCCCC------------
Confidence            999999999999999997 689988754431   1  1111111      233333333322111111            


Q ss_pred             CCcEEEccchhhhccCCCCCC-CCc---CCCCCCCC---ceeEcCCCCCcccCCCceEEEecCCC--CCCCccccceEEE
Q 040805          308 QGAMVKASKQQIRALSRSQEG-PSI---WPFAGESR---GTFNLFGKRPSHSNNFGELFEADSND--FRPLEDLDITVSY  378 (540)
Q Consensus       308 ~g~Iv~~~~e~l~~l~~~~~~-~s~---~~~~~~~~---~~fnL~~~~P~~~n~~G~~~~~~~~~--~p~L~~l~isv~~  378 (540)
                       ..+-+... .++.++..... .|.   +++.....   .-..+....| +  ++-.+..+|+.+  .+.-   -|++.+
T Consensus       194 -d~~ar~~~-~~rP~~~r~~~~~SPlf~Y~w~~t~eAL~~la~~e~~dp-~--dG~~~ryvNP~TGg~~mp---tI~a~m  265 (351)
T COG3435         194 -DSLARYGP-GMRPLRHRWGKPYSPLFNYAWDRTREALERLARLEEPDP-F--DGYKMRYVNPVTGGYAMP---TIGAFM  265 (351)
T ss_pred             -CchhhcCC-CccccccCCCCCCCcccccccccHHHHHHHHHhccCCCC-C--CcceEEEecCCCCCCcCc---hHHHHH
Confidence             12222111 22222111000 010   11100000   0011122333 1  223455555443  1211   366666


Q ss_pred             EEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeE
Q 040805          379 ANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPV  458 (540)
Q Consensus       379 ~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h  458 (540)
                      --|.||-..-||-|+++ .|.-|++|+|++.|=.                         ++|  ..++||+||||.=+.|
T Consensus       266 qlL~~Gf~~~~~r~t~s-~iy~V~eGsg~~~Ig~-------------------------~rf--~~~~~D~fvVPsW~~~  317 (351)
T COG3435         266 QLLPPGFHGKAHRHTDS-TIYHVVEGSGYTIIGG-------------------------ERF--DWSAGDIFVVPSWAWH  317 (351)
T ss_pred             HhcCCcccCCceeccCC-EEEEEEecceeEEECC-------------------------EEe--eccCCCEEEccCccee
Confidence            77888888899988766 5788999999986522                         344  6889999999999999


Q ss_pred             EEEecCCCCEEEEEE
Q 040805          459 VTVASQNNNLEVVCF  473 (540)
Q Consensus       459 ~~~n~~~e~l~~v~F  473 (540)
                      -..|+ .++..+.||
T Consensus       318 ~~~~g-s~da~LFsf  331 (351)
T COG3435         318 EHVNG-SEDAVLFSF  331 (351)
T ss_pred             ecccC-CcceEEEec
Confidence            98887 567777787

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.64  E-value=2.6e-07  Score=83.85  Aligned_cols=79  Identities=13%  Similarity=0.190  Sum_probs=69.2

Q ss_pred             ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      ...++.++.+.||+-..+|.|...+++.||++|+|.+.+=.                         +.  ..|++||+++
T Consensus        34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~-------------------------~~--~~v~~gd~~~   86 (127)
T COG0662          34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGG-------------------------EE--VEVKAGDSVY   86 (127)
T ss_pred             CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECC-------------------------EE--EEecCCCEEE
Confidence            36889999999999999999999999999999999998541                         22  3699999999


Q ss_pred             ECCCCeEEEEecCCCCEEEEEEEecC
Q 040805          452 VPAGHPVVTVASQNNNLEVVCFEINA  477 (540)
Q Consensus       452 VPaG~~h~~~n~~~e~l~~v~F~~~a  477 (540)
                      ||+|.+|.+.|.|+.+|.+++....+
T Consensus        87 iP~g~~H~~~N~G~~~L~liei~~p~  112 (127)
T COG0662          87 IPAGTPHRVRNTGKIPLVLIEVQSPP  112 (127)
T ss_pred             ECCCCcEEEEcCCCcceEEEEEecCC
Confidence            99999999999999999999875443

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=98.57  E-value=5.1e-07  Score=84.54  Aligned_cols=87  Identities=21%  Similarity=0.352  Sum_probs=71.7

Q ss_pred             cCCceEEEeccCccccccccccccceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEE
Q 040805          155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRV  233 (540)
Q Consensus       155 ~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~i  233 (540)
                      -..|+.++|...          ..|.+-.++++||..+..++| +.+|..+|++|.|.+.+    +...+.|.+||+++|
T Consensus        49 rpWG~~~~l~~~----------~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~----~~~~~~~~~g~sv~I  114 (151)
T PF01050_consen   49 RPWGSYEVLDEG----------EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL----DDEEFTLKEGDSVYI  114 (151)
T ss_pred             cCCcEEEEEEcc----------CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE----CCEEEEEcCCCEEEE
Confidence            356889998421          235555669999988777754 78999999999999998    677899999999999


Q ss_pred             CCCCeEEEEeCCCCccEEEEEEe
Q 040805          234 PSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       234 PaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      |+|..|.+.|.| +.+|.+|-+-
T Consensus       115 p~g~~H~i~n~g-~~~L~~IEVq  136 (151)
T PF01050_consen  115 PRGAKHRIENPG-KTPLEIIEVQ  136 (151)
T ss_pred             CCCCEEEEECCC-CcCcEEEEEe
Confidence            999999999998 5689998765

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=98.57  E-value=3.5e-07  Score=87.99  Aligned_cols=70  Identities=17%  Similarity=0.175  Sum_probs=59.6

Q ss_pred             eeeeCCCcccc-ccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          183 ILIANPQTFVT-PTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       183 ~~~l~Pggl~~-Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      +.++.||+... ++||...|++||++|++.+.+    +...+.|.+||.++||++++|.+.|.+ +++++++++..
T Consensus       111 ~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~----~~~~~~l~~Gd~~~~~~~~~H~~~n~~-~~~~~~l~~~~  181 (185)
T PRK09943        111 FETYQPGTTTGERIKHQGEEIGTVLEGEIVLTI----NGQDYHLVAGQSYAINTGIPHSFSNTS-AGICRIISAHT  181 (185)
T ss_pred             EEEccCCCCcccccccCCcEEEEEEEeEEEEEE----CCEEEEecCCCEEEEcCCCCeeeeCCC-CCCeEEEEEeC
Confidence            34789998654 455778999999999999887    557899999999999999999999987 56898888764

>PRK11171 hypothetical protein; Provisional

Probab=98.56  E-value=3.6e-07  Score=93.13  Aligned_cols=77  Identities=16%  Similarity=0.164  Sum_probs=65.8

Q ss_pred             ceeeeeeeCCCccccc-cccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          179 YRLGILIANPQTFVTP-THLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~P-h~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      +-+.+++|+||+-... ||+...+.+||++|++.+.+    +...+.|.+||++++|++.+|++.|+| +++++++. ++
T Consensus       184 ~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~----~~~~~~l~~GD~i~~~~~~~h~~~N~g-~~~~~yl~-~k  257 (266)
T PRK11171        184 MHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL----NNDWVEVEAGDFIWMRAYCPQACYAGG-PGPFRYLL-YK  257 (266)
T ss_pred             cEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCCEEEECCC-CCcEEEEE-Ec
Confidence            4566679999988766 46788999999999999987    678899999999999999999999998 57899884 55


Q ss_pred             cCCC
Q 040805          258 SINL  261 (540)
Q Consensus       258 ~~~~  261 (540)
                      +.|.
T Consensus       258 ~~nr  261 (266)
T PRK11171        258 DVNR  261 (266)
T ss_pred             cccc
Confidence            6765

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=98.52  E-value=4.9e-07  Score=99.18  Aligned_cols=76  Identities=14%  Similarity=0.285  Sum_probs=64.6

Q ss_pred             ccceeeeeeeCCCcccccc-ccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805          177 EKYRLGILIANPQTFVTPT-HLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~Ph-~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i  255 (540)
                      .++-+.+++++||+...+| |++.+|++||++|++++.+    +.+++.|++||.++||+|.+|.+.|++ ++++++|++
T Consensus       374 ~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~----dg~~~~l~~GDsi~ip~~~~H~~~N~g-~~~~~~i~v  448 (468)
T TIGR01479       374 DRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI----GDETLLLTENESTYIPLGVIHRLENPG-KIPLELIEV  448 (468)
T ss_pred             CCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEE----CCEEEEecCCCEEEECCCCcEEEEcCC-CCCEEEEEE
Confidence            3566777799999876555 4567788899999999987    567899999999999999999999998 579999998


Q ss_pred             ee
Q 040805          256 IK  257 (540)
Q Consensus       256 ~~  257 (540)
                      ..
T Consensus       449 ~~  450 (468)
T TIGR01479       449 QS  450 (468)
T ss_pred             Ec
Confidence            74

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.51  E-value=7e-07  Score=80.93  Aligned_cols=77  Identities=16%  Similarity=0.285  Sum_probs=64.6

Q ss_pred             ccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcE
Q 040805          370 EDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSA  449 (540)
Q Consensus       370 ~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV  449 (540)
                      ...++.+..+.+.||+-...|.||-...++||++|++++++-.+                         .  ..|++||+
T Consensus        39 ~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~-------------------------~--~~l~~Gd~   91 (131)
T COG1917          39 EGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEGE-------------------------K--KELKAGDV   91 (131)
T ss_pred             CCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecCC-------------------------c--eEecCCCE
Confidence            45578899999999999999999877799999999999997622                         1  36999999


Q ss_pred             EEECCCCeEEEEecCCCCEEEEEE
Q 040805          450 YIVPAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       450 ~vVPaG~~h~~~n~~~e~l~~v~F  473 (540)
                      ++||+|..|+..|.++..+.+|+.
T Consensus        92 i~ip~g~~H~~~a~~~~~~~~l~v  115 (131)
T COG1917          92 IIIPPGVVHGLKAVEDEPMVLLLV  115 (131)
T ss_pred             EEECCCCeeeeccCCCCceeEEEE
Confidence            999999999999987766454443

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=98.48  E-value=7.3e-07  Score=97.79  Aligned_cols=77  Identities=16%  Similarity=0.269  Sum_probs=63.9

Q ss_pred             cceeeeeeeCCCccc-cccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          178 KYRLGILIANPQTFV-TPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~-~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      .+.+..+++.||+-. +|.|++.+|.+||++|++.+++    +.+++.|.+||.++||+|.+|.+.|+| +++|++|++.
T Consensus       384 ~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~i----dg~~~~L~~GDSi~ip~g~~H~~~N~g-~~~l~iI~V~  458 (478)
T PRK15460        384 RYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTI----DGDIKLLGENESIYIPLGATHCLENPG-KIPLDLIEVR  458 (478)
T ss_pred             cEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEE----CCEEEEecCCCEEEECCCCcEEEEcCC-CCCEEEEEEE
Confidence            344555699999754 3444566799999999999998    667899999999999999999999998 5799999987


Q ss_pred             ecC
Q 040805          257 KSI  259 (540)
Q Consensus       257 ~~~  259 (540)
                      .+.
T Consensus       459 ~g~  461 (478)
T PRK15460        459 SGS  461 (478)
T ss_pred             cCC
Confidence            544

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=98.47  E-value=1.6e-06  Score=78.63  Aligned_cols=76  Identities=16%  Similarity=0.257  Sum_probs=62.7

Q ss_pred             ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      .++++.+++|.||+-...|+|.. .++.||++|++.+.++.. +                      +.  ..|.+||+++
T Consensus        33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~-g----------------------~~--~~L~aGD~i~   86 (125)
T PRK13290         33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLAT-G----------------------EV--HPIRPGTMYA   86 (125)
T ss_pred             CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCC-C----------------------EE--EEeCCCeEEE
Confidence            46789999999999888899865 589999999999985431 1                      22  3799999999


Q ss_pred             ECCCCeEEEEecCCCCEEEEEEEe
Q 040805          452 VPAGHPVVTVASQNNNLEVVCFEI  475 (540)
Q Consensus       452 VPaG~~h~~~n~~~e~l~~v~F~~  475 (540)
                      +|++.+|.+.|.  +++++++..+
T Consensus        87 ~~~~~~H~~~N~--e~~~~l~v~t  108 (125)
T PRK13290         87 LDKHDRHYLRAG--EDMRLVCVFN  108 (125)
T ss_pred             ECCCCcEEEEcC--CCEEEEEEEC
Confidence            999999999997  6898887633

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.39  E-value=1.5e-06  Score=80.60  Aligned_cols=80  Identities=14%  Similarity=0.217  Sum_probs=67.2

Q ss_pred             cceEEEEEEcCCCcc-cccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          373 DITVSYANISKGAMA-APFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       373 ~isv~~~~L~pggm~-~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      ++++....+.||+-. .+|||+.-.|++||++|++.+.+=.  +                         ...|++||++-
T Consensus        41 ~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~--~-------------------------e~~lrpGD~~g   93 (161)
T COG3837          41 RFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDG--G-------------------------ETRLRPGDSAG   93 (161)
T ss_pred             hcccceEEeCCCCccccccccccCceEEEEEcCceEEEECC--e-------------------------eEEecCCceee
Confidence            578888999999985 7899999999999999999875311  1                         13699999999


Q ss_pred             ECCC--CeEEEEecCCCCEEEEEEEecCCC
Q 040805          452 VPAG--HPVVTVASQNNNLEVVCFEINAEG  479 (540)
Q Consensus       452 VPaG--~~h~~~n~~~e~l~~v~F~~~a~~  479 (540)
                      +|+|  .+|.++|.++..+.+++..+.+..
T Consensus        94 FpAG~~~aHhliN~s~~~~~yL~vG~r~~~  123 (161)
T COG3837          94 FPAGVGNAHHLINRSDVILRYLEVGTREPD  123 (161)
T ss_pred             ccCCCcceeEEeecCCceEEEEEecccccc
Confidence            9999  899999998889999998666533

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=98.37  E-value=2.9e-06  Score=78.01  Aligned_cols=85  Identities=20%  Similarity=0.360  Sum_probs=54.9

Q ss_pred             cccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEec-----CCceEEeeCCCcEEEECCCCeEEEEeCCC
Q 040805          172 LLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRE-----NNRESYNVKRGDIIRVPSGNTFYVTNTDD  246 (540)
Q Consensus       172 ~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~-----~~~~~~~l~~GDv~~iPaG~~h~~~N~g~  246 (540)
                      ++-|+..+-+=+=++.||.-+++|-|..+|+++|++|+|++-+-..     |...++.+-+++.|.||.+.+|-+.|+++
T Consensus        37 ~~hGmkevEVwlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e  116 (167)
T PF02041_consen   37 LLHGMKEVEVWLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNE  116 (167)
T ss_dssp             HHH--SSEEEEEEEE-TT-B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---S
T ss_pred             hhcCceeeeEEeeeecCCCCCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCC
Confidence            4446666656566899999999999999999999999998887754     46678999999999999999999999997


Q ss_pred             CccEEEEEEe
Q 040805          247 DEKLYIVKFI  256 (540)
Q Consensus       247 ~e~l~~v~i~  256 (540)
                      .++|.++.+.
T Consensus       117 ~eDlqvlVii  126 (167)
T PF02041_consen  117 HEDLQVLVII  126 (167)
T ss_dssp             SS-EEEEEEE
T ss_pred             CcceEEEEEe
Confidence            7899998776

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.36  E-value=1.8e-06  Score=76.43  Aligned_cols=79  Identities=19%  Similarity=0.217  Sum_probs=64.4

Q ss_pred             ccccceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCc-eEEeeCCCcEEEECCCCeEEEEeCCCCccEEE
Q 040805          175 GLEKYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNR-ESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYI  252 (540)
Q Consensus       175 Gi~~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~-~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~  252 (540)
                      |.+.+-+.+++|.||+-.--|+| .-+..+||++|++.+-+  .+.. +...+++||.|+||+|++|--+|.. ++++..
T Consensus        42 Gas~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~--G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S-~ep~s~  118 (142)
T COG4101          42 GASGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWY--GNRLEEHAEVGPGDFFYIPPGVPHQPANLS-TEPLSA  118 (142)
T ss_pred             ccceeeEEEEeeCCCccccccccccccEEEEEEeceeeeee--ccceeeeEEecCCCeEEcCCCCCCcccccC-CCCeEE
Confidence            67778888999999999877776 57788999999998766  1122 3568899999999999999999997 788887


Q ss_pred             EEEe
Q 040805          253 VKFI  256 (540)
Q Consensus       253 v~i~  256 (540)
                      +..-
T Consensus       119 vIaR  122 (142)
T COG4101         119 VIAR  122 (142)
T ss_pred             EEEc
Confidence            6443

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=98.23  E-value=4.6e-05  Score=73.33  Aligned_cols=76  Identities=9%  Similarity=0.223  Sum_probs=61.4

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      .+.+....+.||+-..+++|....|++||++|++.+.+-   +                      +.  ..|.+||.++|
T Consensus       106 ~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~---~----------------------~~--~~l~~Gd~~~~  158 (185)
T PRK09943        106 TLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTIN---G----------------------QD--YHLVAGQSYAI  158 (185)
T ss_pred             eeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEEC---C----------------------EE--EEecCCCEEEE
Confidence            456677789999976655555779999999999998752   2                      23  37999999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEEEe
Q 040805          453 PAGHPVVTVASQNNNLEVVCFEI  475 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F~~  475 (540)
                      |++.+|.+.|.+++++.++++.+
T Consensus       159 ~~~~~H~~~n~~~~~~~~l~~~~  181 (185)
T PRK09943        159 NTGIPHSFSNTSAGICRIISAHT  181 (185)
T ss_pred             cCCCCeeeeCCCCCCeEEEEEeC
Confidence            99999999998888998888743

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=98.19  E-value=1.1e-05  Score=68.49  Aligned_cols=71  Identities=27%  Similarity=0.474  Sum_probs=55.4

Q ss_pred             cceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEE
Q 040805          178 KYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIV  253 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v  253 (540)
                      .+..++++|.|++.-.|..+ +..-++||++|...+++    ...++.+.+||+|.||+|-...+.|.+ +++++++
T Consensus        11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti----~~~~f~v~~G~~F~VP~gN~Y~i~N~~-~~~a~Lf   82 (85)
T PF11699_consen   11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTI----HETSFVVTKGGSFQVPRGNYYSIKNIG-NEEAKLF   82 (85)
T ss_dssp             S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEE----TTEEEEEETT-EEEE-TT-EEEEEE-S-SS-EEEE
T ss_pred             CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEE----cCcEEEEeCCCEEEECCCCEEEEEECC-CCcEEEE
Confidence            45677889999999888886 67788999999999999    667899999999999999999999998 4567664

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=98.18  E-value=8.7e-06  Score=76.69  Aligned_cols=65  Identities=18%  Similarity=0.307  Sum_probs=50.9

Q ss_pred             cccccccCCCeEEEEEeeEEEEEEEecCCceE-EeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          191 FVTPTHLDADAVFFVSWGQGTITVIRENNRES-YNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       191 l~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~-~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      +...|.|..+|+.||+.|+|.+.+...++... ..+++||+|+||+|+.||+.-+ .+..+.++-+|
T Consensus        84 f~~EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~-~~~~i~aiRlF  149 (157)
T PF03079_consen   84 FFEEHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLG-ESPYIKAIRLF  149 (157)
T ss_dssp             HCS-EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEES-TTSSEEEEEEE
T ss_pred             hheeEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcC-CCCcEEEEEee
Confidence            45788899999999999999999998877765 7899999999999999999765 45678888777

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=98.17  E-value=2.7e-05  Score=73.02  Aligned_cols=90  Identities=13%  Similarity=0.208  Sum_probs=75.6

Q ss_pred             CCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCcccc
Q 040805          353 NNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREE  432 (540)
Q Consensus       353 n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~  432 (540)
                      ...|+...++..       -++.+-++++.||..+..|+|..-++.-+|++|.|.+.+   ++                 
T Consensus        49 rpWG~~~~l~~~-------~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~---~~-----------------  101 (151)
T PF01050_consen   49 RPWGSYEVLDEG-------EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL---DD-----------------  101 (151)
T ss_pred             cCCcEEEEEEcc-------CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE---CC-----------------
Confidence            356777777632       257799999999999999999999999999999999985   22                 


Q ss_pred             CCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEec
Q 040805          433 GSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEIN  476 (540)
Q Consensus       433 ~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~  476 (540)
                           +.  ..|.+||.+.||+|..|.+.|.++.+|+|+.+-+.
T Consensus       102 -----~~--~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq~G  138 (151)
T PF01050_consen  102 -----EE--FTLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQTG  138 (151)
T ss_pred             -----EE--EEEcCCCEEEECCCCEEEEECCCCcCcEEEEEecC
Confidence                 22  36999999999999999999998999999987443

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=98.14  E-value=1.7e-05  Score=76.35  Aligned_cols=78  Identities=26%  Similarity=0.385  Sum_probs=52.4

Q ss_pred             cceeeeeeeCCCcc------cccccc-C------CCeEEEEEeeEEEEEEEecCC-----ceEEeeCCCcEEEECCCCeE
Q 040805          178 KYRLGILIANPQTF------VTPTHL-D------ADAVFFVSWGQGTITVIRENN-----RESYNVKRGDIIRVPSGNTF  239 (540)
Q Consensus       178 ~~rl~~~~l~Pggl------~~Ph~~-~------A~ei~yV~~G~g~ig~V~~~~-----~~~~~l~~GDv~~iPaG~~h  239 (540)
                      +++..+.+|.||.+      +--||| .      .+|+++|++|+|.+=+-.+.+     -....+++||+++||+|.+|
T Consensus        49 ~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH  128 (182)
T PF06560_consen   49 NLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAH  128 (182)
T ss_dssp             -EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EE
T ss_pred             eEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceE
Confidence            46788889999964      345554 3      689999999999998877665     23468899999999999999


Q ss_pred             EEEeCCCCccEEEEEEe
Q 040805          240 YVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       240 ~~~N~g~~e~l~~v~i~  256 (540)
                      -.+|+| +++|++.++.
T Consensus       129 ~tIN~g-~~~L~~~~~~  144 (182)
T PF06560_consen  129 RTINTG-DEPLVFAAWV  144 (182)
T ss_dssp             EEEE-S-SS-EEEEEEE
T ss_pred             EEEECC-CCcEEEEEEE
Confidence            999998 6799998887

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=98.12  E-value=1.6e-05  Score=87.41  Aligned_cols=88  Identities=14%  Similarity=0.143  Sum_probs=72.1

Q ss_pred             CCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccC
Q 040805          354 NFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEG  433 (540)
Q Consensus       354 ~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~  433 (540)
                      ..|....+..       +-++.+..++|.||+-..+|+|+...++.||++|++.+.+=.                     
T Consensus       363 pWG~~~~~~~-------~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg---------------------  414 (468)
T TIGR01479       363 PWGKYDSIDQ-------GDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGD---------------------  414 (468)
T ss_pred             CCCceEEEec-------CCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECC---------------------
Confidence            4665544442       236889999999999989999999999999999999997421                     


Q ss_pred             CccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEe
Q 040805          434 SATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEI  475 (540)
Q Consensus       434 ~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~  475 (540)
                          +.  ..|++||.++||+|.+|.+.|.+++++++++..+
T Consensus       415 ----~~--~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~  450 (468)
T TIGR01479       415 ----ET--LLLTENESTYIPLGVIHRLENPGKIPLELIEVQS  450 (468)
T ss_pred             ----EE--EEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEc
Confidence                22  3799999999999999999999999999988744

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=98.08  E-value=3e-05  Score=74.68  Aligned_cols=89  Identities=16%  Similarity=0.258  Sum_probs=53.7

Q ss_pred             CCCccccceEEEEEEcCCC------cccccccCC------CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCC
Q 040805          367 RPLEDLDITVSYANISKGA------MAAPFYNSR------STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGS  434 (540)
Q Consensus       367 p~L~~l~isv~~~~L~pgg------m~~PH~h~~------A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~  434 (540)
                      ..|+..+|......|.||-      |.--|||+.      -+|+-+|++|+|.+-+-.+.+..                .
T Consensus        43 ~~~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~----------------~  106 (182)
T PF06560_consen   43 EWLQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDD----------------V  106 (182)
T ss_dssp             -------EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-------------------
T ss_pred             ccceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCc----------------c
Confidence            3455567777888888875      567799998      88999999999999988876510                0


Q ss_pred             ccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805          435 ATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       435 ~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F  473 (540)
                      .  +.+.-.+.+||+++||.|++|..+|.++++|.+...
T Consensus       107 ~--~~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~~~~  143 (182)
T PF06560_consen  107 G--DVIAVEAKPGDVVYIPPGYAHRTINTGDEPLVFAAW  143 (182)
T ss_dssp             ----EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred             e--eEEEEEeCCCCEEEECCCceEEEEECCCCcEEEEEE
Confidence            0  344568999999999999999999999999998754

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=98.06  E-value=2.6e-05  Score=77.10  Aligned_cols=76  Identities=17%  Similarity=0.199  Sum_probs=57.8

Q ss_pred             cccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805          176 LEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       176 i~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i  255 (540)
                      -+.+..+++.++-..  .|++++.+|+.||++|+.++.+    +..++.+++||+++||+|..|.+.+.+   ..+++++
T Consensus       154 ~s~m~aGf~~~~~~s--f~wtl~~dEi~YVLEGe~~l~I----dG~t~~l~pGDvlfIPkGs~~hf~tp~---~aRflyV  224 (233)
T PRK15457        154 GSSMAAGFMQWENAF--FPWTLNYDEIDMVLEGELHVRH----EGETMIAKAGDVMFIPKGSSIEFGTPS---SVRFLYV  224 (233)
T ss_pred             CCceeeEEEEEecCc--cceeccceEEEEEEEeEEEEEE----CCEEEEeCCCcEEEECCCCeEEecCCC---CeeEEEE
Confidence            356777788888644  4677899999999999999998    578999999999999999994334433   4555555


Q ss_pred             eecCC
Q 040805          256 IKSIN  260 (540)
Q Consensus       256 ~~~~~  260 (540)
                      ..|.+
T Consensus       225 ~~Pa~  229 (233)
T PRK15457        225 AWPAN  229 (233)
T ss_pred             EecCc
Confidence            54443

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=98.05  E-value=0.00048  Score=67.27  Aligned_cols=185  Identities=16%  Similarity=0.194  Sum_probs=122.4

Q ss_pred             eeeeCCCc-cccccc-cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCC
Q 040805          183 ILIANPQT-FVTPTH-LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSIN  260 (540)
Q Consensus       183 ~~~l~Pgg-l~~Ph~-~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~  260 (540)
                      ++++.|+| .-.|-- ..++.++||++|+..+.+    ...++.|++|+..++|+|..+-+.|.. .++.+|-.+-....
T Consensus        65 ive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~----~G~th~l~eggyaylPpgs~~~~~N~~-~~~~rfhw~rk~Y~  139 (264)
T COG3257          65 IVELHPNGGSQRPEGDEGAETFLFVVSGEITVKA----EGKTHALREGGYAYLPPGSGWTLRNAQ-KEDSRFHWIRKRYQ  139 (264)
T ss_pred             eEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEE----cCeEEEeccCCeEEeCCCCcceEeecc-CCceEEEEEeecce
Confidence            34788887 444544 368999999999998887    667899999999999999999999986 34566554432111


Q ss_pred             CCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCCCCCc
Q 040805          261 LPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGESRG  340 (540)
Q Consensus       261 ~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~~~~  340 (540)
                                                           .++-   -+..+.|+--.+    ++.+     +          
T Consensus       140 -------------------------------------~VdG---~~~P~~~~~Ne~----ei~~-----~----------  160 (264)
T COG3257         140 -------------------------------------PVEG---VQAPELVSGNES----EIEP-----S----------  160 (264)
T ss_pred             -------------------------------------eecC---ccCCcceecChh----hCCC-----C----------
Confidence                                                 0110   011112221111    1111     1          


Q ss_pred             eeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcc---cccccCCCcEEEEEEeceEEEEEEcCCCCC
Q 040805          341 TFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMA---APFYNSRSTKVAVVVAGDGYIEIACPHVSR  417 (540)
Q Consensus       341 ~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~---~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~  417 (540)
                              |--..++-+.+.++++++.    .||.|..+++.|||..   +-|+-   .-=+||++|+|...+=..    
T Consensus       161 --------~m~gtdg~~attv~P~d~r----~Dmhv~ivsFePGa~ip~aEtHvm---EHGlyvLeGk~vYrLn~d----  221 (264)
T COG3257         161 --------PMEGTDGVIATTVLPKELR----FDMHVHIVSFEPGASIPYAETHVM---EHGLYVLEGKGVYRLNNN----  221 (264)
T ss_pred             --------CCCCCCCeEEEeeCccccC----cceEEEEEEecCCcccchhhhhhh---hcceEEEecceEEeecCc----
Confidence                    1001233355566766542    4899999999999974   44541   125899999998763211    


Q ss_pred             CcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805          418 SSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F  473 (540)
                                           -  -.|.+||.+.+-|..|-+.++.|...+.++-.
T Consensus       222 ---------------------w--v~V~aGD~mwm~A~cpQacyagG~g~frYLly  254 (264)
T COG3257         222 ---------------------W--VPVEAGDYIWMGAYCPQACYAGGRGAFRYLLY  254 (264)
T ss_pred             ---------------------e--EEeecccEEEeeccChhhhccCCCCceEEEEE
Confidence                                 1  37999999999999999999998877777655

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=98.03  E-value=1.5e-05  Score=76.10  Aligned_cols=59  Identities=12%  Similarity=0.206  Sum_probs=50.6

Q ss_pred             CCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          187 NPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       187 ~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      -||.-.--|++..+|++|+++|...|.+++.+......|++||+|+||+|++|......
T Consensus        42 Gpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~~  100 (177)
T PRK13264         42 GPNARTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQREA  100 (177)
T ss_pred             cCCcccccccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccCC
Confidence            56655555777899999999999999999876667899999999999999999997743

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=98.02  E-value=1.3e-05  Score=72.73  Aligned_cols=60  Identities=20%  Similarity=0.324  Sum_probs=50.3

Q ss_pred             ccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCE
Q 040805          389 PFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNL  468 (540)
Q Consensus       389 PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l  468 (540)
                      -|||++|+|++.|++|++.+++=.++++                      .+  .+.+|||++||+|..|.-..+ +-++
T Consensus        58 HHYHs~aHEVl~vlrgqA~l~iGG~~G~----------------------el--~v~~GDvlliPAGvGH~rl~s-S~DF  112 (163)
T COG4297          58 HHYHSGAHEVLGVLRGQAGLQIGGADGQ----------------------EL--EVGEGDVLLIPAGVGHCRLHS-SADF  112 (163)
T ss_pred             ccccCCcceEEEEecceeEEEecCCCCc----------------------ee--eecCCCEEEEecCcccccccC-CCCe
Confidence            4999999999999999999999988873                      33  689999999999999986544 4567


Q ss_pred             EEEEE
Q 040805          469 EVVCF  473 (540)
Q Consensus       469 ~~v~F  473 (540)
                      .+++-
T Consensus       113 ~VvGa  117 (163)
T COG4297         113 QVVGA  117 (163)
T ss_pred             EEEcc
Confidence            77753

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=98.00  E-value=3.3e-05  Score=68.09  Aligned_cols=67  Identities=22%  Similarity=0.350  Sum_probs=48.3

Q ss_pred             CCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecC
Q 040805          188 PQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSI  259 (540)
Q Consensus       188 Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~  259 (540)
                      |+-...||||+.-+|.||++|.+++.+    +...+.|++||+++||+|.+|.+.-.+ ++++..+.+..+.
T Consensus        12 ~~~~~~~h~h~~~~i~~v~~G~~~~~~----~~~~~~l~~g~~~li~p~~~H~~~~~~-~~~~~~~~i~~~~   78 (136)
T PF02311_consen   12 PNFEFPPHWHDFYEIIYVLSGEGTLHI----DGQEYPLKPGDLFLIPPGQPHSYYPDS-NEPWEYYWIYFSP   78 (136)
T ss_dssp             TT-SEEEETT-SEEEEEEEEE-EEEEE----TTEEEEE-TT-EEEE-TTS-EEEEE-T-TSEEEEEEEEE--
T ss_pred             CCCccCCEECCCEEEEEEeCCEEEEEE----CCEEEEEECCEEEEecCCccEEEecCC-CCCEEEEEEEECH
Confidence            555668999999999999999999987    677899999999999999999998876 3467776666433

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=97.99  E-value=2.2e-05  Score=73.83  Aligned_cols=59  Identities=19%  Similarity=0.281  Sum_probs=47.9

Q ss_pred             CCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          187 NPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       187 ~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      -||.-.--|.+..+|++||++|...|-+++.+......|++||+++||+|++|......
T Consensus        36 Gpn~R~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~~   94 (159)
T TIGR03037        36 GPNARTDFHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPA   94 (159)
T ss_pred             CCCCCcccccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccCC
Confidence            33333333445689999999999999988877667899999999999999999998754

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=97.99  E-value=3.6e-05  Score=84.62  Aligned_cols=78  Identities=14%  Similarity=0.158  Sum_probs=67.5

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      ++.+.+++|.||+-..+|+|....|+.||++|++.+++=.                         +.  ..|.+||.+.|
T Consensus       384 ~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg-------------------------~~--~~L~~GDSi~i  436 (478)
T PRK15460        384 RYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDG-------------------------DI--KLLGENESIYI  436 (478)
T ss_pred             cEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECC-------------------------EE--EEecCCCEEEE
Confidence            6788999999999888888888889999999999998532                         22  47999999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEEEecC
Q 040805          453 PAGHPVVTVASQNNNLEVVCFEINA  477 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F~~~a  477 (540)
                      |+|.+|.+.|.+++++++++.-+.+
T Consensus       437 p~g~~H~~~N~g~~~l~iI~V~~g~  461 (478)
T PRK15460        437 PLGATHCLENPGKIPLDLIEVRSGS  461 (478)
T ss_pred             CCCCcEEEEcCCCCCEEEEEEEcCC
Confidence            9999999999999999999875443

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=97.90  E-value=7.6e-05  Score=66.26  Aligned_cols=77  Identities=16%  Similarity=0.239  Sum_probs=63.1

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      +|-+..++|.||+-.--|.|-+-...+||+.|++.+-.-+- .                       -+...+.+||.|+|
T Consensus        45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~r-L-----------------------E~ha~~~pGDf~Yi  100 (142)
T COG4101          45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNR-L-----------------------EEHAEVGPGDFFYI  100 (142)
T ss_pred             eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccc-e-----------------------eeeEEecCCCeEEc
Confidence            67889999999999999999888889999999998753221 1                       23356899999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEE
Q 040805          453 PAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F  473 (540)
                      |+|.||--.|.+++++..|.-
T Consensus       101 PpgVPHqp~N~S~ep~s~vIa  121 (142)
T COG4101         101 PPGVPHQPANLSTEPLSAVIA  121 (142)
T ss_pred             CCCCCCcccccCCCCeEEEEE
Confidence            999999887777888876654

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=97.89  E-value=6.1e-05  Score=70.85  Aligned_cols=64  Identities=22%  Similarity=0.384  Sum_probs=54.4

Q ss_pred             ccccccCCCeEEEEEeeEEEEEEEecCCc-eEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          192 VTPTHLDADAVFFVSWGQGTITVIRENNR-ESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       192 ~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~-~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      .--|+|..+|+.|++.|.|.+++..++++ ....+.+||++.||+|+-||+--+. +..++.|-+|
T Consensus        88 ~~EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~-~~~f~AvRlF  152 (181)
T COG1791          88 LQEHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTE-SPNFKAVRLF  152 (181)
T ss_pred             HHHhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccC-CCcEEEEEEe
Confidence            45677889999999999999999998854 5678899999999999999997765 4568888777

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=97.78  E-value=8.5e-05  Score=61.21  Aligned_cols=59  Identities=31%  Similarity=0.398  Sum_probs=45.8

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEE
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYV  241 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~  241 (540)
                      .+..+++...||.+..+ | ..+|++||++|+++|+.   ....+.+|++||++++|+|+..-+
T Consensus         6 ~~~~g~w~~~pg~~~~~-~-~~~E~~~vleG~v~it~---~~G~~~~~~aGD~~~~p~G~~~~w   64 (74)
T PF05899_consen    6 VFSAGVWECTPGKFPWP-Y-PEDEFFYVLEGEVTITD---EDGETVTFKAGDAFFLPKGWTGTW   64 (74)
T ss_dssp             SEEEEEEEEECEEEEEE-E-SSEEEEEEEEEEEEEEE---TTTEEEEEETTEEEEE-TTEEEEE
T ss_pred             CEEEEEEEECCceeEee-C-CCCEEEEEEEeEEEEEE---CCCCEEEEcCCcEEEECCCCEEEE
Confidence            35677889999886433 3 44999999999998774   355679999999999999986554

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=97.62  E-value=0.00037  Score=65.74  Aligned_cols=70  Identities=13%  Similarity=0.171  Sum_probs=51.0

Q ss_pred             CcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecC
Q 040805          385 AMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQ  464 (540)
Q Consensus       385 gm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~  464 (540)
                      -+...|.|. ..||-||+.|+|.+.|...+.                      .-++-.+.+||+++||+|..||...+.
T Consensus        83 ~f~~EH~H~-deEvR~i~~G~g~Fdvr~~~~----------------------~wiri~~e~GDli~vP~g~~HrF~~~~  139 (157)
T PF03079_consen   83 KFFEEHTHE-DEEVRYIVDGSGYFDVRDGDD----------------------VWIRILCEKGDLIVVPAGTYHRFTLGE  139 (157)
T ss_dssp             HHCS-EEES-S-EEEEEEECEEEEEEE-TTC----------------------EEEEEEEETTCEEEE-TT--EEEEEST
T ss_pred             hhheeEecC-hheEEEEeCcEEEEEEEcCCC----------------------EEEEEEEcCCCEEecCCCCceeEEcCC
Confidence            456789985 479999999999999997754                      234457899999999999999998876


Q ss_pred             CCCEEEEEEEecC
Q 040805          465 NNNLEVVCFEINA  477 (540)
Q Consensus       465 ~e~l~~v~F~~~a  477 (540)
                      +..+..+=|+++.
T Consensus       140 ~~~i~aiRlF~~~  152 (157)
T PF03079_consen  140 SPYIKAIRLFKDE  152 (157)
T ss_dssp             TSSEEEEEEESSC
T ss_pred             CCcEEEEEeecCC
Confidence            6677777665553

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=97.53  E-value=0.00023  Score=73.70  Aligned_cols=65  Identities=20%  Similarity=0.155  Sum_probs=57.8

Q ss_pred             ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      +.+++++-.-.|..+..+|||+.-+|.||++|.+.+.+    +..++.+.+||+++||+|.+|.+...+
T Consensus        24 ~~~~~~~~~~~~~~m~~~HwH~e~Ei~yv~~G~~~~~i----~g~~~~l~~Gd~ili~s~~~H~~~~~~   88 (302)
T PRK10371         24 EYQRLEIEFRPPHIMPTSHWHGQVEVNVPFDGDVEYLI----NNEKVQINQGHITLFWACTPHQLTDPG   88 (302)
T ss_pred             CCceeEEEeeCCCCCCCCCccccEEEEEecCCcEEEEE----CCEEEEEcCCcEEEEecCCcccccccC
Confidence            67888888889999999999999999999999998776    567899999999999999999876544

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=97.49  E-value=0.00049  Score=64.41  Aligned_cols=75  Identities=21%  Similarity=0.325  Sum_probs=51.4

Q ss_pred             ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      ..+..++++++...  .|+..+-+|+.||++|+..+.+    ..+++..++|||++||+|+..-+.-.+   ..+++.+.
T Consensus        75 ~~l~~Gf~~le~~~--f~wtl~YDEi~~VlEG~L~i~~----~G~~~~A~~GDvi~iPkGs~I~fst~~---~a~~~Yv~  145 (152)
T PF06249_consen   75 PRLSAGFMELEKTS--FPWTLTYDEIKYVLEGTLEISI----DGQTVTAKPGDVIFIPKGSTITFSTPD---YARFFYVT  145 (152)
T ss_dssp             -SSEEEEEEEEEEE--EEEE-SSEEEEEEEEEEEEEEE----TTEEEEEETT-EEEE-TT-EEEEEEEE---EEEEEEEE
T ss_pred             CceeeEEEEEeCCC--ccEEeecceEEEEEEeEEEEEE----CCEEEEEcCCcEEEECCCCEEEEecCC---CEEEEEEE
Confidence            35677888888743  4655799999999999877664    467899999999999999877764432   45555555


Q ss_pred             ecCC
Q 040805          257 KSIN  260 (540)
Q Consensus       257 ~~~~  260 (540)
                      .|.|
T Consensus       146 yPa~  149 (152)
T PF06249_consen  146 YPAN  149 (152)
T ss_dssp             ESTT
T ss_pred             CCCc
Confidence            4543

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=97.49  E-value=0.00043  Score=66.22  Aligned_cols=66  Identities=14%  Similarity=0.210  Sum_probs=50.5

Q ss_pred             cCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEE
Q 040805          382 SKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTV  461 (540)
Q Consensus       382 ~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~  461 (540)
                      .||.-..-|+|+ +.|+.|+++|...+.|++.+.                       .-+..|++||+|+||+|.+|...
T Consensus        42 Gpn~r~d~H~~~-tdE~FyqleG~~~l~v~d~g~-----------------------~~~v~L~eGd~fllP~gvpHsP~   97 (177)
T PRK13264         42 GPNARTDFHYDP-GEEFFYQLEGDMYLKVQEDGK-----------------------RRDVPIREGEMFLLPPHVPHSPQ   97 (177)
T ss_pred             cCCcccccccCC-CceEEEEECCeEEEEEEcCCc-----------------------eeeEEECCCCEEEeCCCCCcCCc
Confidence            566667779975 799999999999999998531                       12357999999999999999876


Q ss_pred             ecCCCCEEEEEE
Q 040805          462 ASQNNNLEVVCF  473 (540)
Q Consensus       462 n~~~e~l~~v~F  473 (540)
                      +.  ++...+.+
T Consensus        98 r~--~~tv~Lvi  107 (177)
T PRK13264         98 RE--AGSIGLVI  107 (177)
T ss_pred             cC--CCeEEEEE
Confidence            64  33444444

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=97.41  E-value=0.0012  Score=57.94  Aligned_cols=63  Identities=16%  Similarity=0.344  Sum_probs=42.6

Q ss_pred             CCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEe
Q 040805          383 KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVA  462 (540)
Q Consensus       383 pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n  462 (540)
                      ++-.+.|||| +-.+|.||++|.+.+.+ .-                        +.  ..|++||+++||+|.+|....
T Consensus        12 ~~~~~~~h~h-~~~~i~~v~~G~~~~~~-~~------------------------~~--~~l~~g~~~li~p~~~H~~~~   63 (136)
T PF02311_consen   12 PNFEFPPHWH-DFYEIIYVLSGEGTLHI-DG------------------------QE--YPLKPGDLFLIPPGQPHSYYP   63 (136)
T ss_dssp             TT-SEEEETT--SEEEEEEEEE-EEEEE-TT------------------------EE--EEE-TT-EEEE-TTS-EEEEE
T ss_pred             CCCccCCEEC-CCEEEEEEeCCEEEEEE-CC------------------------EE--EEEECCEEEEecCCccEEEec
Confidence            4556789997 48899999999999853 21                        22  379999999999999999888


Q ss_pred             cCCCCEEEEEE
Q 040805          463 SQNNNLEVVCF  473 (540)
Q Consensus       463 ~~~e~l~~v~F  473 (540)
                      .+++++....+
T Consensus        64 ~~~~~~~~~~i   74 (136)
T PF02311_consen   64 DSNEPWEYYWI   74 (136)
T ss_dssp             -TTSEEEEEEE
T ss_pred             CCCCCEEEEEE
Confidence            76667765444

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=97.40  E-value=0.00059  Score=69.24  Aligned_cols=52  Identities=17%  Similarity=0.139  Sum_probs=45.1

Q ss_pred             ccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          190 TFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       190 gl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      ....||||+..+|+||++|.+.+.+    +..++.+.+||+++||+|..|......
T Consensus        34 ~~~~~H~H~~~ei~~v~~G~~~~~i----~~~~~~l~~g~l~~i~p~~~H~~~~~~   85 (278)
T PRK10296         34 SVSGLHQHDYYEFTLVLTGRYYQEI----NGKRVLLERGDFVFIPLGSHHQSFYEF   85 (278)
T ss_pred             cCCCCcccccEEEEEEEeceEEEEE----CCEEEEECCCcEEEeCCCCccceeeeC
Confidence            3457999999999999999998887    566899999999999999999775543

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=97.33  E-value=0.00051  Score=68.07  Aligned_cols=71  Identities=10%  Similarity=0.035  Sum_probs=58.9

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      ..++.++.+.||+.++.|.|...|+++|++|.-    .+.    ...+.+||++.+|+|..|...+.+ ++++.++++.+
T Consensus       126 ~~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f----~de----~g~y~~Gd~i~~p~~~~H~p~a~~-~~~Cicl~v~d  196 (215)
T TIGR02451       126 NARVRLLYIEAGQSIPQHTHKGFELTLVLHGAF----SDE----TGVYGVGDFEEADGSVQHQPRTVS-GGDCLCLAVLD  196 (215)
T ss_pred             CcEEEEEEECCCCccCCCcCCCcEEEEEEEEEE----EcC----CCccCCCeEEECCCCCCcCcccCC-CCCeEEEEEec
Confidence            357888999999998888888999999999983    222    246899999999999999999986 45788887774

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=97.32  E-value=0.0013  Score=55.91  Aligned_cols=72  Identities=15%  Similarity=0.176  Sum_probs=53.2

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      .++...+.|.||+.=.|.-.-+.+-+.||++|...|+|-..                         .  ..+.+||+|.|
T Consensus        11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~-------------------------~--f~v~~G~~F~V   63 (85)
T PF11699_consen   11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHET-------------------------S--FVVTKGGSFQV   63 (85)
T ss_dssp             S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTE-------------------------E--EEEETT-EEEE
T ss_pred             CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCc-------------------------E--EEEeCCCEEEE
Confidence            48899999999999999887788889999999999986332                         2  36999999999


Q ss_pred             CCCCeEEEEecCCCCEEEE
Q 040805          453 PAGHPVVTVASQNNNLEVV  471 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v  471 (540)
                      |+|-...+.|.++++..+.
T Consensus        64 P~gN~Y~i~N~~~~~a~Lf   82 (85)
T PF11699_consen   64 PRGNYYSIKNIGNEEAKLF   82 (85)
T ss_dssp             -TT-EEEEEE-SSS-EEEE
T ss_pred             CCCCEEEEEECCCCcEEEE
Confidence            9999999999887766543

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=97.26  E-value=0.0019  Score=64.12  Aligned_cols=61  Identities=7%  Similarity=0.162  Sum_probs=49.1

Q ss_pred             ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      -.|++.+..+....+   .|+.+-.||.||++|+..+.+   ++                      +.  ..+.+||+++
T Consensus       155 s~m~aGf~~~~~~sf---~wtl~~dEi~YVLEGe~~l~I---dG----------------------~t--~~l~pGDvlf  204 (233)
T PRK15457        155 SSMAAGFMQWENAFF---PWTLNYDEIDMVLEGELHVRH---EG----------------------ET--MIAKAGDVMF  204 (233)
T ss_pred             CceeeEEEEEecCcc---ceeccceEEEEEEEeEEEEEE---CC----------------------EE--EEeCCCcEEE
Confidence            358889999987553   399999999999999999987   23                      23  3699999999


Q ss_pred             ECCCCeEEEEe
Q 040805          452 VPAGHPVVTVA  462 (540)
Q Consensus       452 VPaG~~h~~~n  462 (540)
                      ||+|..|....
T Consensus       205 IPkGs~~hf~t  215 (233)
T PRK15457        205 IPKGSSIEFGT  215 (233)
T ss_pred             ECCCCeEEecC
Confidence            99999954433

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=97.26  E-value=0.0016  Score=61.46  Aligned_cols=53  Identities=11%  Similarity=0.202  Sum_probs=41.7

Q ss_pred             ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEec
Q 040805          387 AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS  463 (540)
Q Consensus       387 ~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~  463 (540)
                      ..-|.|+ +.++.||++|+..+.+...+.                     .+.  ..|++||+|+||+|.+|...+.
T Consensus        41 ~d~H~~~-tdE~FyqleG~~~l~v~d~g~---------------------~~~--v~L~eGd~flvP~gvpHsP~r~   93 (159)
T TIGR03037        41 TDFHDDP-GEEFFYQLKGEMYLKVTEEGK---------------------RED--VPIREGDIFLLPPHVPHSPQRP   93 (159)
T ss_pred             cccccCC-CceEEEEEcceEEEEEEcCCc---------------------EEE--EEECCCCEEEeCCCCCcccccC
Confidence            3344443 889999999999999887632                     123  4799999999999999988775

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=97.26  E-value=0.0019  Score=60.99  Aligned_cols=68  Identities=18%  Similarity=0.229  Sum_probs=55.8

Q ss_pred             ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCC
Q 040805          387 AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNN  466 (540)
Q Consensus       387 ~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e  466 (540)
                      ..=|.| ...||-|++.|.|.+.|..+++                      +.+.-.+.+||.+.||+|.-||.--+.+.
T Consensus        88 ~~EH~H-~d~EvRy~vaG~GiF~v~~~d~----------------------~~~~i~c~~gDLI~vP~gi~HwFtlt~~~  144 (181)
T COG1791          88 LQEHLH-TDDEVRYFVAGEGIFDVHSPDG----------------------KVYQIRCEKGDLISVPPGIYHWFTLTESP  144 (181)
T ss_pred             HHHhcc-CCceEEEEEecceEEEEECCCC----------------------cEEEEEEccCCEEecCCCceEEEEccCCC
Confidence            345776 6889999999999999999987                      34556789999999999999998777666


Q ss_pred             CEEEEEEEecC
Q 040805          467 NLEVVCFEINA  477 (540)
Q Consensus       467 ~l~~v~F~~~a  477 (540)
                      ++..|-+++++
T Consensus       145 ~f~AvRlF~~~  155 (181)
T COG1791         145 NFKAVRLFTEP  155 (181)
T ss_pred             cEEEEEEeeCC
Confidence            77777666665

>PRK13500 transcriptional activator RhaR; Provisional

Probab=97.26  E-value=0.00092  Score=69.46  Aligned_cols=56  Identities=20%  Similarity=0.350  Sum_probs=48.6

Q ss_pred             eCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          186 ANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       186 l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      --|.....||||+.-+|+||++|.|.+.+    +...+.+.+||+++||+|.+|.+....
T Consensus        55 ~~~~~~~~~H~H~~~el~~v~~G~g~~~v----~~~~~~l~~Gdl~~I~~~~~H~~~~~~  110 (312)
T PRK13500         55 RYPQDVFAEHTHDFCELVIVWRGNGLHVL----NDRPYRITRGDLFYIHADDKHSYASVN  110 (312)
T ss_pred             CCCCCCCCccccceEEEEEEEcCeEEEEE----CCEEEeecCCeEEEECCCCeecccccC
Confidence            34555668999999999999999999887    667899999999999999999987654

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=97.25  E-value=0.0041  Score=56.08  Aligned_cols=76  Identities=11%  Similarity=0.135  Sum_probs=65.9

Q ss_pred             ceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeec
Q 040805          179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKS  258 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~  258 (540)
                      +.+-..+|.||+-..-||-|-=|-+|+++|+|.|..+..  ..++.|++|.++++-+--.|++....   +|+++|+|+|
T Consensus        35 FS~h~T~i~aGtet~~~YknHlEAvyci~G~Gev~~~~~--G~~~~i~pGt~YaLd~hD~H~lra~~---dm~~vCVFnP  109 (126)
T PF06339_consen   35 FSFHETTIYAGTETHIHYKNHLEAVYCIEGEGEVEDLDT--GEVHPIKPGTMYALDKHDRHYLRAKT---DMRLVCVFNP  109 (126)
T ss_pred             EEEEEEEEeCCCeeEEEecCceEEEEEEeceEEEEEccC--CcEEEcCCCeEEecCCCccEEEEecC---CEEEEEEcCC
Confidence            567777999999988888888899999999998888653  46899999999999999999998753   7999999965


Q ss_pred             C
Q 040805          259 I  259 (540)
Q Consensus       259 ~  259 (540)
                      .
T Consensus       110 p  110 (126)
T PF06339_consen  110 P  110 (126)
T ss_pred             C
Confidence            4

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=97.24  E-value=0.00092  Score=56.96  Aligned_cols=58  Identities=17%  Similarity=0.241  Sum_probs=45.9

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN  243 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N  243 (540)
                      ..++.++.+.||+.++.|.|...+.+|||+|...    +.+    .++.+||.++.|+|+.|-..-
T Consensus        23 g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~----d~~----~~~~~G~~~~~p~g~~h~~~s   80 (91)
T PF12973_consen   23 GERVSLLRLEPGASLPRHRHPGGEEILVLEGELS----DGD----GRYGAGDWLRLPPGSSHTPRS   80 (91)
T ss_dssp             TEEEEEEEE-TTEEEEEEEESS-EEEEEEECEEE----ETT----CEEETTEEEEE-TTEEEEEEE
T ss_pred             cCEEEEEEECCCCCcCccCCCCcEEEEEEEEEEE----ECC----ccCCCCeEEEeCCCCccccCc
Confidence            4578888999999988888999999999999764    222    356999999999999999985

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=97.15  E-value=0.0038  Score=57.79  Aligned_cols=98  Identities=14%  Similarity=0.236  Sum_probs=56.5

Q ss_pred             CCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeC
Q 040805          366 FRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIR  445 (540)
Q Consensus       366 ~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  445 (540)
                      +..++  .+.|-+-+|.||+-..+|=| ...||.||++|+|..-+..++...     .|             +.-...+-
T Consensus        38 ~hGmk--evEVwlQTfAPG~~TPiHRH-sCEEVFvVLkG~GTl~l~~~~~~~-----pG-------------~pqef~~~   96 (167)
T PF02041_consen   38 LHGMK--EVEVWLQTFAPGSATPIHRH-SCEEVFVVLKGSGTLYLASSHEKY-----PG-------------KPQEFPIF   96 (167)
T ss_dssp             HH--S--SEEEEEEEE-TT-B--EEEE-SS-EEEEEEE--EEEEE--SSSSS--------------------S-EEEEE-
T ss_pred             hcCce--eeeEEeeeecCCCCCCCccc-cccEEEEEEecceEEEEecccccC-----CC-------------CceEEEec
Confidence            34555  47889999999999999998 577999999999999998665321     00             11224788


Q ss_pred             CCcEEEECCCCeEEEEecC-CCCEEEEEEEecCCCCcccccc
Q 040805          446 TDSAYIVPAGHPVVTVASQ-NNNLEVVCFEINAEGNIRFPLA  486 (540)
Q Consensus       446 ~GDV~vVPaG~~h~~~n~~-~e~l~~v~F~~~a~~~~~~~LA  486 (540)
                      +++.|.||.+-+|-+.|++ .++|.++.....  .+.+.|+-
T Consensus        97 pnSTf~IPvn~~HQv~NT~e~eDlqvlViiSr--pPvkvf~y  136 (167)
T PF02041_consen   97 PNSTFHIPVNDAHQVWNTNEHEDLQVLVIISR--PPVKVFIY  136 (167)
T ss_dssp             TTEEEEE-TT--EEEE---SSS-EEEEEEEES--SS--EEEE
T ss_pred             CCCeEEeCCCCcceeecCCCCcceEEEEEecC--CCeEEEEe
Confidence            9999999999999999987 488998776333  46666654

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>PRK13501 transcriptional activator RhaR; Provisional

Probab=97.14  E-value=0.0013  Score=67.30  Aligned_cols=55  Identities=16%  Similarity=0.277  Sum_probs=47.3

Q ss_pred             CCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          187 NPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       187 ~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      .+..-..||||+.-+++||++|++++.+    +...+.+.+||+++||+|.+|++...+
T Consensus        26 ~~~~~~~~H~H~~~ei~~i~~G~~~~~i----~~~~~~l~~g~~~~I~p~~~H~~~~~~   80 (290)
T PRK13501         26 YPQETFVEHTHQFCEIVIVWRGNGLHVL----NDHPYRITCGDVFYIQAADHHSYESVH   80 (290)
T ss_pred             CCCCCCccccccceeEEEEecCceEEEE----CCeeeeecCCeEEEEcCCCcccccccC
Confidence            3444457899999999999999999988    567899999999999999999987643

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=97.14  E-value=0.0012  Score=60.20  Aligned_cols=66  Identities=17%  Similarity=0.221  Sum_probs=48.6

Q ss_pred             CCcccc-cccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          188 PQTFVT-PTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       188 Pggl~~-Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      .|+++. +||| +|.|++.|++|++.+-+=.+ +.....+.+||+++||||+-|.-.-.  +-++.++..+
T Consensus        51 ~g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~-~G~el~v~~GDvlliPAGvGH~rl~s--S~DF~VvGaY  118 (163)
T COG4297          51 RGGVFNYHHYHSGAHEVLGVLRGQAGLQIGGA-DGQELEVGEGDVLLIPAGVGHCRLHS--SADFQVVGAY  118 (163)
T ss_pred             cccccccccccCCcceEEEEecceeEEEecCC-CCceeeecCCCEEEEecCcccccccC--CCCeEEEccc
Confidence            344443 4444 79999999999998877333 33567899999999999999986443  3467777655

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=97.08  E-value=0.0034  Score=58.22  Aligned_cols=75  Identities=19%  Similarity=0.290  Sum_probs=55.0

Q ss_pred             ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      +.+.+++..++|  -..|+..+-+++-||++|+..|.+    ..++..-++||||+||.|.-.-+--++  + ++++.+.
T Consensus        98 ~~l~aG~m~~~~--~tf~wtl~yDe~d~VlEGrL~V~~----~g~tv~a~aGDvifiPKgssIefst~g--e-a~flyvt  168 (176)
T COG4766          98 SRLGAGLMEMKN--TTFPWTLNYDEIDYVLEGRLHVRI----DGRTVIAGAGDVIFIPKGSSIEFSTTG--E-AKFLYVT  168 (176)
T ss_pred             Cccccceeeecc--ccCcceecccceeEEEeeeEEEEE----cCCeEecCCCcEEEecCCCeEEEeccc--e-EEEEEEE
Confidence            445566667788  346888899999999999987665    334667899999999999877775554  2 6665555


Q ss_pred             ecCC
Q 040805          257 KSIN  260 (540)
Q Consensus       257 ~~~~  260 (540)
                      .|.|
T Consensus       169 yPan  172 (176)
T COG4766         169 YPAN  172 (176)
T ss_pred             cccc
Confidence            4543

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=97.05  E-value=0.0016  Score=68.47  Aligned_cols=74  Identities=11%  Similarity=0.080  Sum_probs=62.5

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      .|.+..-.|.||-...||=| ++..|-||++|+|-.++|+.                        +++  .+++||+|++
T Consensus        80 tl~a~~q~l~pGe~~~~HRh-t~sAl~~vveG~G~~t~V~g------------------------~~~--~~~~gD~~~t  132 (335)
T TIGR02272        80 SLYAGLQLILPGEVAPSHRH-TQSALRFIVEGKGAFTAVDG------------------------ERT--TMHPGDFIIT  132 (335)
T ss_pred             hHHhhhEEeCCCCCCCcccc-ccceEEEEEEcCceEEEECC------------------------EEE--eeeCCCEEEe
Confidence            57778888999999999987 56789999999997777765                        344  7899999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEE
Q 040805          453 PAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F  473 (540)
                      |.++.|.-.|.+++++.|+.+
T Consensus       133 P~w~wH~H~n~~d~~~~wld~  153 (335)
T TIGR02272       133 PSWTWHDHGNPGDEPMIWLDG  153 (335)
T ss_pred             CCCeeEecccCCCCcEEEEec
Confidence            999999988888888777554

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PRK13503 transcriptional activator RhaS; Provisional

Probab=96.98  E-value=0.00097  Score=67.31  Aligned_cols=54  Identities=24%  Similarity=0.388  Sum_probs=46.5

Q ss_pred             CCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          188 PQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       188 Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      |.....+|||+.-+|+||++|.+++.+    +...+.+++||+++||+|..|.+.+.+
T Consensus        24 ~~~~~~~H~H~~~ei~~v~~G~~~~~i----~~~~~~l~~g~~~~i~~~~~h~~~~~~   77 (278)
T PRK13503         24 PQAAFPEHHHDFHEIVIVEHGTGIHVF----NGQPYTLSGGTVCFVRDHDRHLYEHTD   77 (278)
T ss_pred             ccccccccccCceeEEEEecCceeeEe----cCCcccccCCcEEEECCCccchhhhcc
Confidence            445567899999999999999999887    556899999999999999999877654

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=96.95  E-value=0.0026  Score=56.96  Aligned_cols=57  Identities=25%  Similarity=0.328  Sum_probs=45.6

Q ss_pred             eeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEE
Q 040805          180 RLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYV  241 (540)
Q Consensus       180 rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~  241 (540)
                      -.+++...||.+.  .....+|.+|+|+|++.++   +++.+...|++||++++|+|+.--+
T Consensus        46 ~~GiWe~TpG~~r--~~y~~~E~chil~G~v~~T---~d~Ge~v~~~aGD~~~~~~G~~g~W  102 (116)
T COG3450          46 ETGIWECTPGKFR--VTYDEDEFCHILEGRVEVT---PDGGEPVEVRAGDSFVFPAGFKGTW  102 (116)
T ss_pred             eEeEEEecCccce--EEcccceEEEEEeeEEEEE---CCCCeEEEEcCCCEEEECCCCeEEE
Confidence            4567888999872  2235699999999998655   6778899999999999999986544

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=96.95  E-value=0.0048  Score=57.33  Aligned_cols=62  Identities=11%  Similarity=0.283  Sum_probs=42.5

Q ss_pred             eeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCC
Q 040805          185 IANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDD  246 (540)
Q Consensus       185 ~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~  246 (540)
                      .=-||.-.-=|.-..+|++|.++|...+.++..+......|++||+|.+|++++|.=+-..+
T Consensus        39 VGGPN~R~DyHine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHsP~R~~~  100 (151)
T PF06052_consen   39 VGGPNQRTDYHINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHSPQRPAD  100 (151)
T ss_dssp             EESSB--SSEEE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EEEEE-TT
T ss_pred             EcCCCCCCccccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCCCcCCCC
Confidence            33444433333346899999999999999999988888999999999999999999877653

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>PRK13502 transcriptional activator RhaR; Provisional

Probab=96.82  E-value=0.0026  Score=64.54  Aligned_cols=56  Identities=20%  Similarity=0.353  Sum_probs=47.9

Q ss_pred             eCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          186 ANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       186 l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      ..|+-...+|||+.-+++||++|.+++.+    +..++.+++||+++||+|.+|.+...+
T Consensus        25 ~~~~~~~~~H~h~~~~l~~v~~G~~~~~i----~~~~~~l~~g~l~li~~~~~H~~~~~~   80 (282)
T PRK13502         25 RYPQDVFAEHTHEFCELVMVWRGNGLHVL----NERPYRITRGDLFYIRAEDKHSYTSVN   80 (282)
T ss_pred             CCCCCCCCccccceEEEEEEecCcEEEEE----CCEEEeecCCcEEEECCCCcccccccC
Confidence            35555568899999999999999999887    667899999999999999999986544

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=96.82  E-value=0.016  Score=52.96  Aligned_cols=99  Identities=11%  Similarity=0.190  Sum_probs=57.3

Q ss_pred             ceeecCCceEEEeccCccccccccccccceeeeeeeCCCcc-cccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCC
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTF-VTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRG  228 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl-~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~G  228 (540)
                      ..+..+-|.+.++.+++.  .-+ .+  -|+=++.-.|++. .-.|+| ...++++|++|+..+.+-+.....++.|..-
T Consensus         9 ~~~~D~RG~L~~~e~~~~--ipf-~i--~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~   83 (131)
T PF05523_consen    9 KKISDERGSLSVIERFDD--IPF-EI--KRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEP   83 (131)
T ss_dssp             -EEEETTEEEEEEETTTS--SSS------EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--T
T ss_pred             CceeCCCCcEEEEeccCC--CCC-Cc--cEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEEEECCC
Confidence            345677899999976632  122 22  2443343344544 677766 6899999999999999766666678888666


Q ss_pred             -cEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          229 -DIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       229 -Dv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                       ..+.||+|+.|-+.|.++  .++++.+.
T Consensus        84 ~~~L~Ippg~w~~~~~~s~--~svlLv~a  110 (131)
T PF05523_consen   84 NKGLYIPPGVWHGIKNFSE--DSVLLVLA  110 (131)
T ss_dssp             TEEEEE-TT-EEEEE---T--T-EEEEEE
T ss_pred             CeEEEECCchhhHhhccCC--CcEEEEEc
Confidence             499999999999999974  36666554

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=96.79  E-value=0.0028  Score=64.37  Aligned_cols=53  Identities=8%  Similarity=0.048  Sum_probs=45.4

Q ss_pred             CccccccccC-CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          189 QTFVTPTHLD-ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       189 ggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      +....||||+ .-+++||++|.+.+.+    +...+.+++||+++||+|.+|.+....
T Consensus        33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~----~~~~~~l~~g~~~ii~~~~~H~~~~~~   86 (287)
T TIGR02297        33 GRNMPVHFHDRYYQLHYLTEGSIALQL----DEHEYSEYAPCFFLTPPSVPHGFVTDL   86 (287)
T ss_pred             CCCCCCcccccceeEEEEeeCceEEEE----CCEEEEecCCeEEEeCCCCccccccCC
Confidence            3457899997 6899999999998777    446899999999999999999987654

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=96.79  E-value=0.014  Score=52.74  Aligned_cols=76  Identities=14%  Similarity=0.238  Sum_probs=66.5

Q ss_pred             cccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEE
Q 040805          371 DLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAY  450 (540)
Q Consensus       371 ~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~  450 (540)
                      ++|+|+-...|.+|.-...|| .|--|-+|+++|+|.++.+..+                       ++  ..+++|.++
T Consensus        32 gmGFS~h~T~i~aGtet~~~Y-knHlEAvyci~G~Gev~~~~~G-----------------------~~--~~i~pGt~Y   85 (126)
T PF06339_consen   32 GMGFSFHETTIYAGTETHIHY-KNHLEAVYCIEGEGEVEDLDTG-----------------------EV--HPIKPGTMY   85 (126)
T ss_pred             CCCEEEEEEEEeCCCeeEEEe-cCceEEEEEEeceEEEEEccCC-----------------------cE--EEcCCCeEE
Confidence            568999999999999999999 7999999999999999987642                       22  479999999


Q ss_pred             EECCCCeEEEEecCCCCEEEEEEE
Q 040805          451 IVPAGHPVVTVASQNNNLEVVCFE  474 (540)
Q Consensus       451 vVPaG~~h~~~n~~~e~l~~v~F~  474 (540)
                      +.-+-=.|++.+..  +|.++|.+
T Consensus        86 aLd~hD~H~lra~~--dm~~vCVF  107 (126)
T PF06339_consen   86 ALDKHDRHYLRAKT--DMRLVCVF  107 (126)
T ss_pred             ecCCCccEEEEecC--CEEEEEEc
Confidence            99999999999874  89999853

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=96.75  E-value=0.018  Score=52.63  Aligned_cols=98  Identities=13%  Similarity=0.082  Sum_probs=56.3

Q ss_pred             cccCCCceEEEecCCCCCCCccccceEEEEEEcCCC-cccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCC
Q 040805          350 SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGA-MAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSS  428 (540)
Q Consensus       350 ~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pgg-m~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~  428 (540)
                      .+...-|.+..+...+...+.  =-.+..+.-.|+| .+.-|+|...+++++|++|+..+.+-+....            
T Consensus        10 ~~~D~RG~L~~~e~~~~ipf~--i~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~------------   75 (131)
T PF05523_consen   10 KISDERGSLSVIERFDDIPFE--IKRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREE------------   75 (131)
T ss_dssp             EEEETTEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-E------------
T ss_pred             ceeCCCCcEEEEeccCCCCCC--ccEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCc------------
Confidence            455668888888866433332  1234555334444 4999999999999999999999986654321            


Q ss_pred             ccccCCccceEEeeeeCCC-cEEEECCCCeEEEEecCCCCEEEEEE
Q 040805          429 TREEGSATYHKVSSRIRTD-SAYIVPAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       429 ~~~~~~~~~~~~~~~l~~G-DV~vVPaG~~h~~~n~~~e~l~~v~F  473 (540)
                               +.+  .|... .++.||+|+.|.+.+.+. +..++++
T Consensus        76 ---------~~~--~L~~~~~~L~Ippg~w~~~~~~s~-~svlLv~  109 (131)
T PF05523_consen   76 ---------EEF--ILDEPNKGLYIPPGVWHGIKNFSE-DSVLLVL  109 (131)
T ss_dssp             ---------EEE--EE--TTEEEEE-TT-EEEEE---T-T-EEEEE
T ss_pred             ---------EEE--EECCCCeEEEECCchhhHhhccCC-CcEEEEE
Confidence                     223  45444 699999999999988754 4666666

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=96.71  E-value=0.0057  Score=50.32  Aligned_cols=59  Identities=15%  Similarity=0.236  Sum_probs=43.0

Q ss_pred             ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805          374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP  453 (540)
Q Consensus       374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP  453 (540)
                      +++..-..+||.+..+ |  ..+|++||++|++.++.-  ++                      ..  ..|++||++++|
T Consensus         7 ~~~g~w~~~pg~~~~~-~--~~~E~~~vleG~v~it~~--~G----------------------~~--~~~~aGD~~~~p   57 (74)
T PF05899_consen    7 FSAGVWECTPGKFPWP-Y--PEDEFFYVLEGEVTITDE--DG----------------------ET--VTFKAGDAFFLP   57 (74)
T ss_dssp             EEEEEEEEECEEEEEE-E--SSEEEEEEEEEEEEEEET--TT----------------------EE--EEEETTEEEEE-
T ss_pred             EEEEEEEECCceeEee-C--CCCEEEEEEEeEEEEEEC--CC----------------------CE--EEEcCCcEEEEC
Confidence            5566777788775433 4  349999999999988743  33                      23  379999999999


Q ss_pred             CCCeEEEE
Q 040805          454 AGHPVVTV  461 (540)
Q Consensus       454 aG~~h~~~  461 (540)
                      +|+...+.
T Consensus        58 ~G~~~~w~   65 (74)
T PF05899_consen   58 KGWTGTWE   65 (74)
T ss_dssp             TTEEEEEE
T ss_pred             CCCEEEEE
Confidence            99977554

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>PRK13501 transcriptional activator RhaR; Provisional

Probab=96.62  E-value=0.0063  Score=62.23  Aligned_cols=55  Identities=13%  Similarity=0.190  Sum_probs=43.2

Q ss_pred             CCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEe
Q 040805          383 KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVA  462 (540)
Q Consensus       383 pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n  462 (540)
                      +..-+.|||| +-.+|+||++|.|.+.|   ++                      +.  ..+.+||+++||+|.+|.+..
T Consensus        27 ~~~~~~~H~H-~~~ei~~i~~G~~~~~i---~~----------------------~~--~~l~~g~~~~I~p~~~H~~~~   78 (290)
T PRK13501         27 PQETFVEHTH-QFCEIVIVWRGNGLHVL---ND----------------------HP--YRITCGDVFYIQAADHHSYES   78 (290)
T ss_pred             CCCCCccccc-cceeEEEEecCceEEEE---CC----------------------ee--eeecCCeEEEEcCCCcccccc
Confidence            3334669998 68899999999999885   22                      22  379999999999999998765


Q ss_pred             cCC
Q 040805          463 SQN  465 (540)
Q Consensus       463 ~~~  465 (540)
                      .++
T Consensus        79 ~~~   81 (290)
T PRK13501         79 VHD   81 (290)
T ss_pred             cCC
Confidence            433

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=96.52  E-value=0.0085  Score=50.99  Aligned_cols=59  Identities=15%  Similarity=0.150  Sum_probs=46.8

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      +..+..+.+.||+.+..|.|+ ..+.+||++|+...+    +                           .++.+||.++.
T Consensus        23 g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~d~----~---------------------------~~~~~G~~~~~   70 (91)
T PF12973_consen   23 GERVSLLRLEPGASLPRHRHP-GGEEILVLEGELSDG----D---------------------------GRYGAGDWLRL   70 (91)
T ss_dssp             TEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEEET----T---------------------------CEEETTEEEEE
T ss_pred             cCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEEEC----C---------------------------ccCCCCeEEEe
Confidence            578999999999999999985 567779999988742    1                           24689999999


Q ss_pred             CCCCeEEEEec
Q 040805          453 PAGHPVVTVAS  463 (540)
Q Consensus       453 PaG~~h~~~n~  463 (540)
                      |+|..|...+.
T Consensus        71 p~g~~h~~~s~   81 (91)
T PF12973_consen   71 PPGSSHTPRSD   81 (91)
T ss_dssp             -TTEEEEEEES
T ss_pred             CCCCccccCcC
Confidence            99999988853

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=96.51  E-value=0.076  Score=57.29  Aligned_cols=60  Identities=15%  Similarity=0.238  Sum_probs=40.2

Q ss_pred             ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805          374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP  453 (540)
Q Consensus       374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP  453 (540)
                      ..+..+.+..+....   ......|++|++|++.+.  . ++                      ..  ..|++|++++||
T Consensus       321 F~~~~~~l~~~~~~~---~~~~~~Illv~~G~~~i~--~-~~----------------------~~--~~l~~G~~~fip  370 (389)
T PRK15131        321 FAFSLHDLSDQPTTL---SQQSAAILFCVEGEAVLW--K-GE----------------------QQ--LTLKPGESAFIA  370 (389)
T ss_pred             cEEEEEEECCceEEe---cCCCcEEEEEEcceEEEE--e-CC----------------------eE--EEECCCCEEEEe
Confidence            445555555442222   235778999999999874  2 22                      12  369999999999


Q ss_pred             CCCeEEEEec
Q 040805          454 AGHPVVTVAS  463 (540)
Q Consensus       454 aG~~h~~~n~  463 (540)
                      ++...+.+.+
T Consensus       371 a~~~~~~~~g  380 (389)
T PRK15131        371 ANESPVTVSG  380 (389)
T ss_pred             CCCccEEEec
Confidence            9988776643

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=96.44  E-value=0.1  Score=54.20  Aligned_cols=60  Identities=18%  Similarity=0.244  Sum_probs=39.8

Q ss_pred             ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805          374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP  453 (540)
Q Consensus       374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP  453 (540)
                      .++.++.+... +..  .+.++..|++|++|++.+..  . +                      ..  ..|++|++++||
T Consensus       235 F~~~~~~~~~~-~~~--~~~~~~~il~v~~G~~~i~~--~-~----------------------~~--~~l~~G~~~~ip  284 (302)
T TIGR00218       235 FSVYKWDISGK-AEF--IQQQSALILSVLEGSGRIKS--G-G----------------------KT--LPLKKGESFFIP  284 (302)
T ss_pred             eEEEEEEeCCc-eee--ccCCCcEEEEEEcceEEEEE--C-C----------------------EE--EEEecccEEEEc
Confidence            45566666543 211  12457789999999998852  2 1                      12  368999999999


Q ss_pred             CCCeEEEEec
Q 040805          454 AGHPVVTVAS  463 (540)
Q Consensus       454 aG~~h~~~n~  463 (540)
                      ++...+.+.+
T Consensus       285 a~~~~~~i~g  294 (302)
T TIGR00218       285 AHLGPFTIEG  294 (302)
T ss_pred             cCCccEEEEe
Confidence            9996665543

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=96.43  E-value=0.01  Score=61.57  Aligned_cols=63  Identities=17%  Similarity=0.124  Sum_probs=48.6

Q ss_pred             eEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC
Q 040805          375 TVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA  454 (540)
Q Consensus       375 sv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa  454 (540)
                      +.+.....|..|..+||| +--+|.||++|.+.+.+   ++                      +.  ..|.+||+++||+
T Consensus        27 ~~~~~~~~~~~m~~~HwH-~e~Ei~yv~~G~~~~~i---~g----------------------~~--~~l~~Gd~ili~s   78 (302)
T PRK10371         27 RLEIEFRPPHIMPTSHWH-GQVEVNVPFDGDVEYLI---NN----------------------EK--VQINQGHITLFWA   78 (302)
T ss_pred             eeEEEeeCCCCCCCCCcc-ccEEEEEecCCcEEEEE---CC----------------------EE--EEEcCCcEEEEec
Confidence            344555667889999998 67899999999987664   22                      22  3699999999999


Q ss_pred             CCeEEEEecCC
Q 040805          455 GHPVVTVASQN  465 (540)
Q Consensus       455 G~~h~~~n~~~  465 (540)
                      |.+|.+...++
T Consensus        79 ~~~H~~~~~~~   89 (302)
T PRK10371         79 CTPHQLTDPGN   89 (302)
T ss_pred             CCcccccccCC
Confidence            99998765443

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=96.42  E-value=0.017  Score=58.54  Aligned_cols=51  Identities=14%  Similarity=0.209  Sum_probs=41.2

Q ss_pred             CCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEe
Q 040805          384 GAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVA  462 (540)
Q Consensus       384 ggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n  462 (540)
                      +....|||| +..+|+||++|.+.+.+   ++                      +.  ..+.+||+++||+|..|....
T Consensus        33 ~~~~~~H~H-~~~ei~~v~~G~~~~~i---~~----------------------~~--~~l~~g~l~~i~p~~~H~~~~   83 (278)
T PRK10296         33 ESVSGLHQH-DYYEFTLVLTGRYYQEI---NG----------------------KR--VLLERGDFVFIPLGSHHQSFY   83 (278)
T ss_pred             hcCCCCccc-ccEEEEEEEeceEEEEE---CC----------------------EE--EEECCCcEEEeCCCCccceee
Confidence            445689998 78899999999999875   22                      23  379999999999999996643

>PRK13500 transcriptional activator RhaR; Provisional

Probab=96.40  E-value=0.0083  Score=62.34  Aligned_cols=55  Identities=13%  Similarity=0.151  Sum_probs=42.9

Q ss_pred             CCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEe
Q 040805          383 KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVA  462 (540)
Q Consensus       383 pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n  462 (540)
                      |.....|||| +..+|+||++|.|.+.+=.                         +.  ..+.+|||++||+|.+|.+..
T Consensus        57 ~~~~~~~H~H-~~~el~~v~~G~g~~~v~~-------------------------~~--~~l~~Gdl~~I~~~~~H~~~~  108 (312)
T PRK13500         57 PQDVFAEHTH-DFCELVIVWRGNGLHVLND-------------------------RP--YRITRGDLFYIHADDKHSYAS  108 (312)
T ss_pred             CCCCCCcccc-ceEEEEEEEcCeEEEEECC-------------------------EE--EeecCCeEEEECCCCeecccc
Confidence            4444689998 5899999999999975322                         12  379999999999999998765


Q ss_pred             cCC
Q 040805          463 SQN  465 (540)
Q Consensus       463 ~~~  465 (540)
                      ..+
T Consensus       109 ~~~  111 (312)
T PRK13500        109 VND  111 (312)
T ss_pred             cCC
Confidence            443

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=96.31  E-value=0.011  Score=59.95  Aligned_cols=64  Identities=13%  Similarity=0.188  Sum_probs=47.1

Q ss_pred             CCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEe
Q 040805          383 KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVA  462 (540)
Q Consensus       383 pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n  462 (540)
                      -+....||||.+--+|+||++|.+.+.+   ++                      +.  ..+.+||+++||+|.+|.+..
T Consensus        32 ~~~~~~~H~H~~~~~l~~~~~G~~~~~~---~~----------------------~~--~~l~~g~~~ii~~~~~H~~~~   84 (287)
T TIGR02297        32 FGRNMPVHFHDRYYQLHYLTEGSIALQL---DE----------------------HE--YSEYAPCFFLTPPSVPHGFVT   84 (287)
T ss_pred             cCCCCCCcccccceeEEEEeeCceEEEE---CC----------------------EE--EEecCCeEEEeCCCCcccccc
Confidence            3456899998657899999999998664   12                      22  379999999999999998766


Q ss_pred             cCCCCEEEEEE
Q 040805          463 SQNNNLEVVCF  473 (540)
Q Consensus       463 ~~~e~l~~v~F  473 (540)
                      ..+....++.|
T Consensus        85 ~~~~~~~~i~i   95 (287)
T TIGR02297        85 DLDADGHVLTV   95 (287)
T ss_pred             CCCcceEEEEe
Confidence            54433333443

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=96.30  E-value=0.015  Score=57.66  Aligned_cols=69  Identities=7%  Similarity=-0.006  Sum_probs=56.8

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      +..+..++|.||+-+..|.| ...|+.+|++|.-.    +..                           ..+.+||++.+
T Consensus       126 ~~~v~Ll~i~pG~~~p~H~H-~G~E~tlVLeG~f~----de~---------------------------g~y~~Gd~i~~  173 (215)
T TIGR02451       126 NARVRLLYIEAGQSIPQHTH-KGFELTLVLHGAFS----DET---------------------------GVYGVGDFEEA  173 (215)
T ss_pred             CcEEEEEEECCCCccCCCcC-CCcEEEEEEEEEEE----cCC---------------------------CccCCCeEEEC
Confidence            35788999999999999999 67789999999932    221                           24789999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEE
Q 040805          453 PAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F  473 (540)
                      |.|..|...+.+++++..++.
T Consensus       174 p~~~~H~p~a~~~~~Cicl~v  194 (215)
T TIGR02451       174 DGSVQHQPRTVSGGDCLCLAV  194 (215)
T ss_pred             CCCCCcCcccCCCCCeEEEEE
Confidence            999999999987777776654

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=96.23  E-value=0.0056  Score=61.92  Aligned_cols=206  Identities=14%  Similarity=0.107  Sum_probs=88.2

Q ss_pred             ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEE
Q 040805          175 GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK  254 (540)
Q Consensus       175 Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~  254 (540)
                      |.+.+||   .+.+|-..+||+|+++..+||++|....+   .......-|.+|..+..|+|..|+....++ ..|.++-
T Consensus        35 g~~~~~v---kf~~g~~~pph~H~~~~~~~Vi~G~~~~~---~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~-~~~~~~e  107 (251)
T PF14499_consen   35 GPSGMRV---KFPAGFSSPPHIHNADYRGTVISGELHNG---DPKAAAMWLPAGSYWFQPAGEPHITAAEGE-TNLLFIE  107 (251)
T ss_dssp             S-EEEEE---EE-TT-EE--BEESS-EEEEEEESEEEET---TEE-----E-TTEEEEE-TT-EEEETTS-E-E-EEEEE
T ss_pred             CcceEEE---EcCCCccCCCcceeeeEEEEEEEeEEEcC---CCcccceecCCCceEeccCCCceeeeccCc-cEEEEEE
Confidence            6677777   88888888999999999999999975443   112234569999999999999999877652 2344432


Q ss_pred             EeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCC
Q 040805          255 FIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPF  334 (540)
Q Consensus       255 i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~  334 (540)
                      +   .+-|  |.   +               .=.+.||.-.+.-+..     +...|+=...++|.           |-.
T Consensus       108 ~---g~gp--~~---v---------------~p~~~~~~~~e~p~n~-----~~~~ivwld~~dl~-----------W~~  148 (251)
T PF14499_consen  108 I---GEGP--YD---V---------------KPSEEAFDNGERPINV-----DKDNIVWLDASDLE-----------WIS  148 (251)
T ss_dssp             ----S-----EE---------------------------SS--TT-------GGG-EEEEECCCS-------------EE
T ss_pred             e---CCCc--cc---c---------------cccccccccccccccc-----ccccceEeccccCC-----------ccc
Confidence            2   2211  11   0               0011222211111111     12344444332221           210


Q ss_pred             CCCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCC
Q 040805          335 AGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPH  414 (540)
Q Consensus       335 ~~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~  414 (540)
                                  .+| ....+=.+..+..+  |.  +-.+...++.|-.|---.+|+|+ ..+=+|||+|....++-.-.
T Consensus       149 ------------~~~-~~~~g~~~a~Lwgd--~~--~g~~~gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~~~  210 (251)
T PF14499_consen  149 ------------APP-GPPPGAQIAFLWGD--PN--TGQYTGLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYGAS  210 (251)
T ss_dssp             -------------SS-STT-SEEEEEEEE---TT--S-EE-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEEE
T ss_pred             ------------cCC-CCCCcceEEEEecC--CC--CCceeeEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeecccC
Confidence                        000 00111133333322  11  11244556666666667888875 66889999999887532211


Q ss_pred             CCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEE
Q 040805          415 VSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEV  470 (540)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~  470 (540)
                      .                         ...|.+|.-|.-|....|-+.++ +++..|
T Consensus       211 ~-------------------------~~~L~~GSYf~s~~~~~H~~~~~-e~~~vl  240 (251)
T PF14499_consen  211 N-------------------------FGTLDPGSYFGSPGHITHGIFIT-EDECVL  240 (251)
T ss_dssp             T-------------------------TEEEEE-TT-EE--E------EE-SS-EEE
T ss_pred             C-------------------------CccccCCcccccCCccccccccc-CCCEEE
Confidence            1                         14689999999999999987644 444444

>PRK13502 transcriptional activator RhaR; Provisional

Probab=96.22  E-value=0.017  Score=58.64  Aligned_cols=64  Identities=14%  Similarity=0.137  Sum_probs=47.6

Q ss_pred             ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805          374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP  453 (540)
Q Consensus       374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP  453 (540)
                      +.+..-...|.-...|||| +..+|+||++|.+.+.+=.                         +.  ..|.+||+++||
T Consensus        18 ~~~~~~~~~~~~~~~~H~h-~~~~l~~v~~G~~~~~i~~-------------------------~~--~~l~~g~l~li~   69 (282)
T PRK13502         18 QAVTVADRYPQDVFAEHTH-EFCELVMVWRGNGLHVLNE-------------------------RP--YRITRGDLFYIR   69 (282)
T ss_pred             CceEEecCCCCCCCCcccc-ceEEEEEEecCcEEEEECC-------------------------EE--EeecCCcEEEEC
Confidence            3333444455555789998 5889999999999988522                         22  379999999999


Q ss_pred             CCCeEEEEecCC
Q 040805          454 AGHPVVTVASQN  465 (540)
Q Consensus       454 aG~~h~~~n~~~  465 (540)
                      +|.+|.+...++
T Consensus        70 ~~~~H~~~~~~~   81 (282)
T PRK13502         70 AEDKHSYTSVND   81 (282)
T ss_pred             CCCcccccccCC
Confidence            999998765433

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=96.07  E-value=0.0094  Score=56.04  Aligned_cols=56  Identities=21%  Similarity=0.366  Sum_probs=46.8

Q ss_pred             ccccccccCCCeEEEEEeeEEEEEEEecCCce-EEeeCCCcEEEECCCCeEEEEeCC
Q 040805          190 TFVTPTHLDADAVFFVSWGQGTITVIRENNRE-SYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       190 gl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~-~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      .|+.+|-|.-++|-||+.|.|..-+-+-+... ..-+++||+|++|||+-|-+.-+.
T Consensus        84 ~FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~  140 (179)
T KOG2107|consen   84 SFFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTP  140 (179)
T ss_pred             HHHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCc
Confidence            46788989999999999999998886655544 457899999999999999986654

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional

Probab=96.02  E-value=0.029  Score=57.17  Aligned_cols=77  Identities=18%  Similarity=0.329  Sum_probs=51.3

Q ss_pred             cccccccccc---ceeeeeeeCCCccc-----cccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEE
Q 040805          169 RSKLLRGLEK---YRLGILIANPQTFV-----TPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFY  240 (540)
Q Consensus       169 ~~~~L~Gi~~---~rl~~~~l~Pggl~-----~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~  240 (540)
                      .+|+++|-..   .-.++..+.|++-.     -|+-++.-.+.||++|.+.+-+    +...+.+++||+|+||+|++|.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~r~~~~~~~~i~~~~~G~~~~~~----~~~~~~~~~g~~i~i~p~~~h~   86 (290)
T PRK10572         11 NNPLLPGYSFNAHLVAGLTPIEAGGYLDFFIDRPLGMKGYILNLTIRGQGVIFN----GGRAFVCRPGDLLLFPPGEIHH   86 (290)
T ss_pred             CCcCCCCCCcceeeeecccccccCCccceeeecCCCccceEEEEEEeccEEEec----CCeeEecCCCCEEEECCCCcee
Confidence            4577776311   11122344566543     2334456678899999998754    4457999999999999999998


Q ss_pred             EEeCCCCcc
Q 040805          241 VTNTDDDEK  249 (540)
Q Consensus       241 ~~N~g~~e~  249 (540)
                      +....+...
T Consensus        87 ~~~~~~~~~   95 (290)
T PRK10572         87 YGRHPDSDE   95 (290)
T ss_pred             eccCCCCCc
Confidence            776543333

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=95.73  E-value=0.036  Score=52.07  Aligned_cols=61  Identities=11%  Similarity=0.224  Sum_probs=44.0

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      .|++.+++|...   ...|..+-+||-||++|+..+.  .. +                      +++  ..++|||++|
T Consensus        76 ~l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~--~~-G----------------------~~~--~A~~GDvi~i  125 (152)
T PF06249_consen   76 RLSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEIS--ID-G----------------------QTV--TAKPGDVIFI  125 (152)
T ss_dssp             SSEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEE--ET-T----------------------EEE--EEETT-EEEE
T ss_pred             ceeeEEEEEeCC---CccEEeecceEEEEEEeEEEEE--EC-C----------------------EEE--EEcCCcEEEE
Confidence            588899999874   4569899999999999976665  33 3                      455  4679999999


Q ss_pred             CCCCeEEEEec
Q 040805          453 PAGHPVVTVAS  463 (540)
Q Consensus       453 PaG~~h~~~n~  463 (540)
                      |+|.-+.+-..
T Consensus       126 PkGs~I~fst~  136 (152)
T PF06249_consen  126 PKGSTITFSTP  136 (152)
T ss_dssp             -TT-EEEEEEE
T ss_pred             CCCCEEEEecC
Confidence            99998876443

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=95.67  E-value=0.021  Score=57.86  Aligned_cols=72  Identities=18%  Similarity=0.246  Sum_probs=45.8

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      |-+..++.+.+|=...||+| +++.-+||++|....+     ..                     +.-..-|.+|.-+..
T Consensus        35 g~~~~~vkf~~g~~~pph~H-~~~~~~~Vi~G~~~~~-----~~---------------------~a~~~~l~~Gsy~~~   87 (251)
T PF14499_consen   35 GPSGMRVKFPAGFSSPPHIH-NADYRGTVISGELHNG-----DP---------------------KAAAMWLPAGSYWFQ   87 (251)
T ss_dssp             S-EEEEEEE-TT-EE--BEE-SS-EEEEEEESEEEET-----TE---------------------E-----E-TTEEEEE
T ss_pred             CcceEEEEcCCCccCCCcce-eeeEEEEEEEeEEEcC-----CC---------------------cccceecCCCceEec
Confidence            77889999999999999998 7999999999975552     11                     222246999999999


Q ss_pred             CCCCeEEEEecCCCCEEEE
Q 040805          453 PAGHPVVTVASQNNNLEVV  471 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v  471 (540)
                      |+|.+|+..+.++..+.|+
T Consensus        88 PaG~~h~~~~~~~~~~~~~  106 (251)
T PF14499_consen   88 PAGEPHITAAEGETNLLFI  106 (251)
T ss_dssp             -TT-EEEETTS-EE-EEEE
T ss_pred             cCCCceeeeccCccEEEEE
Confidence            9999998777766556665

>PRK13503 transcriptional activator RhaS; Provisional

Probab=95.65  E-value=0.027  Score=56.83  Aligned_cols=54  Identities=9%  Similarity=0.028  Sum_probs=43.1

Q ss_pred             cCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEE
Q 040805          382 SKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTV  461 (540)
Q Consensus       382 ~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~  461 (540)
                      .+.....+||| +..+|+||++|.+.+.|=..                         .  ..|++||+++||+|-+|...
T Consensus        23 ~~~~~~~~H~H-~~~ei~~v~~G~~~~~i~~~-------------------------~--~~l~~g~~~~i~~~~~h~~~   74 (278)
T PRK13503         23 LPQAAFPEHHH-DFHEIVIVEHGTGIHVFNGQ-------------------------P--YTLSGGTVCFVRDHDRHLYE   74 (278)
T ss_pred             Ccccccccccc-CceeEEEEecCceeeEecCC-------------------------c--ccccCCcEEEECCCccchhh
Confidence            45566789998 78899999999998764332                         1  36999999999999999765


Q ss_pred             ec
Q 040805          462 AS  463 (540)
Q Consensus       462 n~  463 (540)
                      +.
T Consensus        75 ~~   76 (278)
T PRK13503         75 HT   76 (278)
T ss_pred             hc
Confidence            54

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.55  E-value=0.035  Score=57.04  Aligned_cols=63  Identities=21%  Similarity=0.256  Sum_probs=52.3

Q ss_pred             eCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEE
Q 040805          186 ANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK  254 (540)
Q Consensus       186 l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~  254 (540)
                      |.||-..-+|++-.+.|+-|.+|+|++.|    +.++|...+||+|+||.=..|-+.|.  .++..+++
T Consensus       268 L~~Gf~~~~~r~t~s~iy~V~eGsg~~~I----g~~rf~~~~~D~fvVPsW~~~~~~~g--s~da~LFs  330 (351)
T COG3435         268 LPPGFHGKAHRHTDSTIYHVVEGSGYTII----GGERFDWSAGDIFVVPSWAWHEHVNG--SEDAVLFS  330 (351)
T ss_pred             cCCcccCCceeccCCEEEEEEecceeEEE----CCEEeeccCCCEEEccCcceeecccC--CcceEEEe
Confidence            46776678888878889999999999888    67899999999999999999988885  34565554

>PF12852 Cupin_6: Cupin

Probab=95.53  E-value=0.03  Score=53.54  Aligned_cols=45  Identities=20%  Similarity=0.365  Sum_probs=37.4

Q ss_pred             CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          199 ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       199 A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      ...+.+|++|.+++.+  ++......|++||++++|.|..|++.-..
T Consensus        35 ~~~fh~V~~G~~~l~~--~~~~~~~~L~~GDivllp~g~~H~l~~~~   79 (186)
T PF12852_consen   35 GASFHVVLRGSCWLRV--PGGGEPIRLEAGDIVLLPRGTAHVLSSDP   79 (186)
T ss_pred             ceEEEEEECCeEEEEE--cCCCCeEEecCCCEEEEcCCCCeEeCCCC
Confidence            3677899999998885  44357789999999999999999996544

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=95.37  E-value=0.2  Score=48.19  Aligned_cols=74  Identities=18%  Similarity=0.199  Sum_probs=54.2

Q ss_pred             cCCCcccccccCC--CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccce-EEeeeeCC--CcEEEECCCC
Q 040805          382 SKGAMAAPFYNSR--STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYH-KVSSRIRT--DSAYIVPAGH  456 (540)
Q Consensus       382 ~pggm~~PH~h~~--A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~--GDV~vVPaG~  456 (540)
                      .+|.++..|+|..  -+++++|++|+...-+|+..-.                 |.+|. .....|.+  +..++||+|+
T Consensus        52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~-----------------SpTfG~~~~~~L~~~~~~~l~IP~G~  114 (176)
T TIGR01221        52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRN-----------------SPTFGKWVGVLLSAENKRQLWIPEGF  114 (176)
T ss_pred             cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCC-----------------cCCCCeEEEEEECCCCCCEEEeCCcc
Confidence            6799999999853  5789999999999999998532                 12222 22345665  6699999999


Q ss_pred             eEEEEecCCCCEEEEEE
Q 040805          457 PVVTVASQNNNLEVVCF  473 (540)
Q Consensus       457 ~h~~~n~~~e~l~~v~F  473 (540)
                      +|-..+.+++ ..++-+
T Consensus       115 aHGF~~L~d~-a~v~Y~  130 (176)
T TIGR01221       115 AHGFVVLSDE-AEFLYK  130 (176)
T ss_pred             eeEEEEcCCC-eEEEEe
Confidence            9988886543 444433

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

>TIGR01015 hmgA homogentisate 1,2-dioxygenase

Probab=95.36  E-value=0.27  Score=53.26  Aligned_cols=57  Identities=23%  Similarity=0.177  Sum_probs=41.6

Q ss_pred             eeCCCccccccc---cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          185 IANPQTFVTPTH---LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       185 ~l~Pggl~~Ph~---~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      ...++.....++   .|.++++|+.+|.+.|..-.  +  ...|++||+++||+|+.+.+.=.+
T Consensus       131 iy~~~~sM~~~~f~NaDGD~Livpq~G~l~i~TEf--G--~L~v~pgei~VIPRG~~frv~l~g  190 (429)
T TIGR01015       131 IYLCNASMENRAFYNADGDFLIVPQQGALLITTEF--G--RLLVEPNEICVIPRGVRFRVTVLE  190 (429)
T ss_pred             EEeCCCCcccceeeccCCCEEEEEEeCcEEEEEec--c--ceEecCCCEEEecCccEEEEeeCC
Confidence            445565443333   37899999999999776521  1  358999999999999998886544

Missing in human disease alkaptonuria.

>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]

Probab=95.36  E-value=0.8  Score=47.93  Aligned_cols=45  Identities=9%  Similarity=0.100  Sum_probs=31.7

Q ss_pred             CCeEEEEEe-eEEE------------EEEEecCCceEEeeCCCcEEEECCCCeEEEEe
Q 040805          199 ADAVFFVSW-GQGT------------ITVIRENNRESYNVKRGDIIRVPSGNTFYVTN  243 (540)
Q Consensus       199 A~ei~yV~~-G~g~------------ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N  243 (540)
                      -+|++|-+. ....            .++.++.-.....|++||+|++|||++|.+..
T Consensus       123 k~Eli~g~~~~~~~~~~e~l~~~i~~~~~~d~~lLn~v~lkpGe~~fl~Agt~HA~~~  180 (312)
T COG1482         123 KPELIYGLTPAKSKPAIEELKEMIDRGGLFDPLLLNRVKLKPGEAFFLPAGTPHAYLK  180 (312)
T ss_pred             CceEEEEEchhhcchhHHHHHHhhhhccccchhhhcEEecCCCCEEEecCCCceeecc
Confidence            567777777 3332            34333344456799999999999999999843

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=95.33  E-value=0.068  Score=52.64  Aligned_cols=91  Identities=11%  Similarity=0.074  Sum_probs=52.5

Q ss_pred             EEEEEEcC-CCcccccccCCCcEEEEEEeceEEEEEEcCCCCCC--ccc--ccccC-------C-CccccC-CccceEEe
Q 040805          376 VSYANISK-GAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRS--SSE--RRHQG-------S-STREEG-SATYHKVS  441 (540)
Q Consensus       376 v~~~~L~p-ggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~--~~~--~~~~~-------~-~~~~~~-~~~~~~~~  441 (540)
                      ...+-|.+ |+....||.+ .+-+..++.|+=++.++.|.....  ...  ..+..       . ...... ....+.+.
T Consensus       132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~  210 (251)
T PF13621_consen  132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE  210 (251)
T ss_dssp             EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred             ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence            33455555 6778889976 678999999999999999975310  000  00000       0 000000 11114567


Q ss_pred             eeeCCCcEEEECCCCeEEEEecCCCC
Q 040805          442 SRIRTDSAYIVPAGHPVVTVASQNNN  467 (540)
Q Consensus       442 ~~l~~GDV~vVPaG~~h~~~n~~~e~  467 (540)
                      ..|++|||++||+|+.|++.|...++
T Consensus       211 ~~l~pGD~LfiP~gWwH~V~~~~~~~  236 (251)
T PF13621_consen  211 VVLEPGDVLFIPPGWWHQVENLSDDD  236 (251)
T ss_dssp             EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred             EEECCCeEEEECCCCeEEEEEcCCCC
Confidence            78999999999999999999883334

...

>PRK05341 homogentisate 1,2-dioxygenase; Provisional

Probab=95.23  E-value=0.35  Score=52.53  Aligned_cols=55  Identities=16%  Similarity=0.232  Sum_probs=40.4

Q ss_pred             eeCCCccccccc---cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe
Q 040805          185 IANPQTFVTPTH---LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN  243 (540)
Q Consensus       185 ~l~Pggl~~Ph~---~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N  243 (540)
                      ...++......+   .|.++++|+.+|++.|..-.    -...+++||+++||+|+.+.+.=
T Consensus       137 ~y~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEf----G~L~v~pgei~VIPRG~~frv~l  194 (438)
T PRK05341        137 LYAANRSMQDRYFYNADGELLIVPQQGRLRLATEL----GVLDVEPGEIAVIPRGVKFRVEL  194 (438)
T ss_pred             EEeCCCCcccceeecCCCCEEEEEEeCCEEEEEec----cceEecCCCEEEEcCccEEEEec
Confidence            335555443333   37899999999999776521    14689999999999999988863

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=95.19  E-value=0.17  Score=53.07  Aligned_cols=93  Identities=14%  Similarity=0.113  Sum_probs=49.7

Q ss_pred             eEEEEEEcCCC--cccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          375 TVSYANISKGA--MAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       375 sv~~~~L~pgg--m~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      ..+-+.++|+|  -+.|||.. -+.+++=+.|+=++.|-.+........+...-. ..+.. .  -.....|++|||++|
T Consensus       114 ~~~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~-~~~~~-~--~~~~~~L~pGD~LYl  188 (319)
T PF08007_consen  114 VGANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFK-QLEEF-E--PVEEVVLEPGDVLYL  188 (319)
T ss_dssp             EEEEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TT-TCG---S--TSEEEEE-TT-EEEE
T ss_pred             cceEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCcc-ccccC-c--eeEEEEECCCCEEEE
Confidence            34567789999  89999953 444556677887888877432110000000000 00000 1  123457999999999


Q ss_pred             CCCCeEEEEecCCCCEEE-EEE
Q 040805          453 PAGHPVVTVASQNNNLEV-VCF  473 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~-v~F  473 (540)
                      |+|++|.-.+.+ ..+.+ ++|
T Consensus       189 PrG~~H~~~~~~-~S~hltv~~  209 (319)
T PF08007_consen  189 PRGWWHQAVTTD-PSLHLTVGF  209 (319)
T ss_dssp             -TT-EEEEEESS--EEEEEEEE
T ss_pred             CCCccCCCCCCC-CceEEEEee
Confidence            999999998886 55555 445

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=95.08  E-value=0.32  Score=46.68  Aligned_cols=79  Identities=22%  Similarity=0.281  Sum_probs=58.7

Q ss_pred             cceEEEEEEcCCCcccccccCCC-cEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEe-eeeCCC--c
Q 040805          373 DITVSYANISKGAMAAPFYNSRS-TKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVS-SRIRTD--S  448 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A-~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~G--D  448 (540)
                      ++|.++    +|-++..|||..- .+++.|+.|++..-.|+-.-.                 +.+|.+.. ..|..-  .
T Consensus        48 n~S~S~----~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~-----------------SpTyg~~~~~~ls~~N~~  106 (173)
T COG1898          48 NHSFSY----PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKD-----------------SPTYGKWVGVVLSAENKR  106 (173)
T ss_pred             eEEEec----CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCC-----------------CCCcceEEEEEecCCCce
Confidence            455554    9999999999998 999999999999999998532                 23444432 334433  7


Q ss_pred             EEEECCCCeEEEEecCCCCEEEEEE
Q 040805          449 AYIVPAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       449 V~vVPaG~~h~~~n~~~e~l~~v~F  473 (540)
                      ++.||.|++|=+.|.++.. +++-+
T Consensus       107 ~l~IP~G~AHGf~~L~d~~-~~~y~  130 (173)
T COG1898         107 QLYIPPGFAHGFQVLSDDA-EVVYK  130 (173)
T ss_pred             EEEeCCcccceeEEccCce-EEEEE
Confidence            9999999999988887654 44433

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=95.01  E-value=0.21  Score=48.04  Aligned_cols=74  Identities=19%  Similarity=0.245  Sum_probs=53.2

Q ss_pred             cCCCcccccccCCC---cEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccce-EEeeeeCCCc--EEEECCC
Q 040805          382 SKGAMAAPFYNSRS---TKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYH-KVSSRIRTDS--AYIVPAG  455 (540)
Q Consensus       382 ~pggm~~PH~h~~A---~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~GD--V~vVPaG  455 (540)
                      .+|.++.+|||..-   ++++.|++|+...-+|+..-.                 |.+|. .....|++++  .++||+|
T Consensus        51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~-----------------SpTfg~~~~~~Ls~~n~~~l~IP~G  113 (176)
T PF00908_consen   51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKG-----------------SPTFGKWVSVELSAENPRQLYIPPG  113 (176)
T ss_dssp             ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTT-----------------STTTT-EEEEEEETTT--EEEE-TT
T ss_pred             cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCC-----------------CCCCCEEEEEEeCccccCEEEeCCc
Confidence            45999999999887   789999999999999986431                 12222 3455676665  8999999


Q ss_pred             CeEEEEecCCCCEEEEEE
Q 040805          456 HPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       456 ~~h~~~n~~~e~l~~v~F  473 (540)
                      ++|-..+.+++ ..++.+
T Consensus       114 ~aHGf~~l~d~-a~v~Y~  130 (176)
T PF00908_consen  114 VAHGFQTLEDD-AEVLYK  130 (176)
T ss_dssp             EEEEEEESSSE-EEEEEE
T ss_pred             ceeeEEeccCc-eEEEEe
Confidence            99988887543 444443

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=94.88  E-value=0.095  Score=47.07  Aligned_cols=59  Identities=14%  Similarity=0.266  Sum_probs=42.2

Q ss_pred             ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805          374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP  453 (540)
Q Consensus       374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP  453 (540)
                      +....=.-+||-..   |+-..+|..|+++|++.++   |.+.                     +.+  .|++||+++||
T Consensus        45 ~~~GiWe~TpG~~r---~~y~~~E~chil~G~v~~T---~d~G---------------------e~v--~~~aGD~~~~~   95 (116)
T COG3450          45 VETGIWECTPGKFR---VTYDEDEFCHILEGRVEVT---PDGG---------------------EPV--EVRAGDSFVFP   95 (116)
T ss_pred             eeEeEEEecCccce---EEcccceEEEEEeeEEEEE---CCCC---------------------eEE--EEcCCCEEEEC
Confidence            44555556666654   3335699999999998876   5432                     343  69999999999


Q ss_pred             CCCeEEEE
Q 040805          454 AGHPVVTV  461 (540)
Q Consensus       454 aG~~h~~~  461 (540)
                      +|+.-.+.
T Consensus        96 ~G~~g~W~  103 (116)
T COG3450          96 AGFKGTWE  103 (116)
T ss_pred             CCCeEEEE
Confidence            99987543

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=94.81  E-value=0.13  Score=50.57  Aligned_cols=61  Identities=16%  Similarity=0.228  Sum_probs=42.5

Q ss_pred             eeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCc------------------------------------eEEeeCC
Q 040805          184 LIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNR------------------------------------ESYNVKR  227 (540)
Q Consensus       184 ~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~------------------------------------~~~~l~~  227 (540)
                      +.-.+|+.+..|+-..+-++.++.|+=++.++.|...                                    ....|++
T Consensus       136 ~ig~~gs~t~lH~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~l~p  215 (251)
T PF13621_consen  136 WIGPPGSFTPLHYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEVVLEP  215 (251)
T ss_dssp             EEE-TTEEEEEEE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEEEEET
T ss_pred             EEeCCCceeeeeECchhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEEEECC
Confidence            3344455555555447789999999999999988621                                    1138999


Q ss_pred             CcEEEECCCCeEEEEeC
Q 040805          228 GDIIRVPSGNTFYVTNT  244 (540)
Q Consensus       228 GDv~~iPaG~~h~~~N~  244 (540)
                      ||+++||+|..|++.|.
T Consensus       216 GD~LfiP~gWwH~V~~~  232 (251)
T PF13621_consen  216 GDVLFIPPGWWHQVENL  232 (251)
T ss_dssp             T-EEEE-TT-EEEEEES
T ss_pred             CeEEEECCCCeEEEEEc
Confidence            99999999999999998

...

>COG1741 Pirin-related protein [General function prediction only]

Probab=94.72  E-value=4.7  Score=41.67  Aligned_cols=68  Identities=15%  Similarity=0.137  Sum_probs=45.7

Q ss_pred             eeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCC--CeEEEEeC-CCCccEEEEEE
Q 040805          185 IANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSG--NTFYVTNT-DDDEKLYIVKF  255 (540)
Q Consensus       185 ~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG--~~h~~~N~-g~~e~l~~v~i  255 (540)
                      .+.||..+.||=| +-+-|.||++|+.+-.=   .-...-.+++|||-..-||  +.|.=.|. ..+.+|..+=+
T Consensus        50 ~~~pG~~f~pHPHrg~etvTyvl~G~i~HrD---S~Gn~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~Ql  121 (276)
T COG1741          50 VLAPGRGFPPHPHRGLETVTYVLDGEIEHRD---SLGNKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQL  121 (276)
T ss_pred             cccCCCcCCCCCCCCcEEEEEEEccEEEEee---cCCceeeecccceeEEcCCCceeecccCCccCCCccceeee
Confidence            5688887777744 67888999999864321   1223467899999888877  57777775 23345555433

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=94.22  E-value=0.085  Score=49.79  Aligned_cols=56  Identities=11%  Similarity=0.235  Sum_probs=45.5

Q ss_pred             CcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEec
Q 040805          385 AMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS  463 (540)
Q Consensus       385 gm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~  463 (540)
                      .++.+|-|.+ .+|-|++.|.|++-|-+-+.                      +=++--+..||++++|+|.-|-...+
T Consensus        84 ~FfEEhlh~d-eeiR~il~GtgYfDVrd~dd----------------------~WIRi~vekGDlivlPaGiyHRFTtt  139 (179)
T KOG2107|consen   84 SFFEEHLHED-EEIRYILEGTGYFDVRDKDD----------------------QWIRIFVEKGDLIVLPAGIYHRFTTT  139 (179)
T ss_pred             HHHHHhcCch-hheEEEeecceEEeeccCCC----------------------CEEEEEEecCCEEEecCcceeeeecC
Confidence            4688999865 48999999999998877654                      34455689999999999999976655

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=94.04  E-value=0.26  Score=46.03  Aligned_cols=62  Identities=10%  Similarity=0.167  Sum_probs=46.4

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      .|++.+....+   ..--|..+-+++-||++|+..|.+-.                         +++  .-.+|||++|
T Consensus        99 ~l~aG~m~~~~---~tf~wtl~yDe~d~VlEGrL~V~~~g-------------------------~tv--~a~aGDvifi  148 (176)
T COG4766          99 RLGAGLMEMKN---TTFPWTLNYDEIDYVLEGRLHVRIDG-------------------------RTV--IAGAGDVIFI  148 (176)
T ss_pred             ccccceeeecc---ccCcceecccceeEEEeeeEEEEEcC-------------------------CeE--ecCCCcEEEe
Confidence            47788888888   33457789999999999988775322                         233  2569999999


Q ss_pred             CCCCeEEEEecC
Q 040805          453 PAGHPVVTVASQ  464 (540)
Q Consensus       453 PaG~~h~~~n~~  464 (540)
                      |.|.-+-+-..+
T Consensus       149 PKgssIefst~g  160 (176)
T COG4766         149 PKGSSIEFSTTG  160 (176)
T ss_pred             cCCCeEEEeccc
Confidence            999998765543

>PLN02288 mannose-6-phosphate isomerase

Probab=94.04  E-value=0.87  Score=49.29  Aligned_cols=60  Identities=20%  Similarity=0.419  Sum_probs=39.9

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      +.++..+.+.++.-.. ....+.+.|++|++|++.+..  ..+                       .....|++|++++|
T Consensus       333 eF~v~~~~l~~~~~~~-~~~~~gp~Illv~~G~~~i~~--~~~-----------------------~~~~~l~~G~~~fv  386 (394)
T PLN02288        333 EFEVDHCDVPPGASVV-FPAVPGPSVFLVIEGEGVLST--GSS-----------------------EDGTAAKRGDVFFV  386 (394)
T ss_pred             ceEEEEEEeCCCCeEe-ecCCCCCEEEEEEcCEEEEec--CCc-----------------------cceEEEeceeEEEE
Confidence            4566777777665321 111467889999999998741  111                       11236999999999


Q ss_pred             CCCCeE
Q 040805          453 PAGHPV  458 (540)
Q Consensus       453 PaG~~h  458 (540)
                      |++...
T Consensus       387 ~a~~~~  392 (394)
T PLN02288        387 PAGTEI  392 (394)
T ss_pred             eCCCcc
Confidence            998754

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=93.38  E-value=0.3  Score=51.25  Aligned_cols=65  Identities=20%  Similarity=0.210  Sum_probs=38.7

Q ss_pred             eCCCc--cccccccCCCeEEEEEeeEEEEEEEecC------C-------------ceEEeeCCCcEEEECCCCeEEEEeC
Q 040805          186 ANPQT--FVTPTHLDADAVFFVSWGQGTITVIREN------N-------------RESYNVKRGDIIRVPSGNTFYVTNT  244 (540)
Q Consensus       186 l~Pgg--l~~Ph~~~A~ei~yV~~G~g~ig~V~~~------~-------------~~~~~l~~GDv~~iPaG~~h~~~N~  244 (540)
                      +.|++  -+.|||=+.+-+++=+.|+=+..+-.+.      .             ...+.|++||+++||+|++|+....
T Consensus       120 ~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~  199 (319)
T PF08007_consen  120 LTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTT  199 (319)
T ss_dssp             EETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEES
T ss_pred             ecCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCCC
Confidence            45555  4577776666666667776565655421      0             1247999999999999999999998


Q ss_pred             CCCccEEE
Q 040805          245 DDDEKLYI  252 (540)
Q Consensus       245 g~~e~l~~  252 (540)
                      +  ..+.+
T Consensus       200 ~--~S~hl  205 (319)
T PF08007_consen  200 D--PSLHL  205 (319)
T ss_dssp             S---EEEE
T ss_pred             C--CceEE
Confidence            7  34544

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=93.21  E-value=0.92  Score=43.70  Aligned_cols=92  Identities=12%  Similarity=0.095  Sum_probs=61.3

Q ss_pred             ceeecCCceEEEeccCcccccccc--cc--ccceeeeeeeCCCccccccccCC----CeEEEEEeeEEEEEEEecC----
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLR--GL--EKYRLGILIANPQTFVTPTHLDA----DAVFFVSWGQGTITVIREN----  218 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~--Gi--~~~rl~~~~l~Pggl~~Ph~~~A----~ei~yV~~G~g~ig~V~~~----  218 (540)
                      .++..+-|.+..+  |...  .|.  |+  ......+..-.+|.++-.|++..    ..+++|++|+...-+|+-.    
T Consensus        15 ~~~~D~RG~f~e~--f~~~--~~~~~~~~~~~~q~n~S~s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~Sp   90 (176)
T PF00908_consen   15 KVFPDERGYFMET--FRED--EFAEAGLPPEFVQDNISVSKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSP   90 (176)
T ss_dssp             EEEEETTEEEEEE--EEHH--HHHHHHSST-EEEEEEEEEETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTST
T ss_pred             ceeccCCEeEehH--hhhH--HHHHhccccccCceEEEEccccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCC
Confidence            4566677777776  5543  221  11  11223333445688988998643    5899999999999999832    


Q ss_pred             ---CceEEeeCCCc--EEEECCCCeEEEEeCCC
Q 040805          219 ---NRESYNVKRGD--IIRVPSGNTFYVTNTDD  246 (540)
Q Consensus       219 ---~~~~~~l~~GD--v~~iPaG~~h~~~N~g~  246 (540)
                         ...++.|.+++  .++||+|++|-+.+..+
T Consensus        91 Tfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d  123 (176)
T PF00908_consen   91 TFGKWVSVELSAENPRQLYIPPGVAHGFQTLED  123 (176)
T ss_dssp             TTT-EEEEEEETTT--EEEE-TTEEEEEEESSS
T ss_pred             CCCEEEEEEeCccccCEEEeCCcceeeEEeccC
Confidence               22467886665  79999999999999863

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=93.12  E-value=1.4  Score=42.58  Aligned_cols=62  Identities=8%  Similarity=-0.048  Sum_probs=49.6

Q ss_pred             eeCCCcccccccc---CCCeEEEEEeeEEEEEEEecC-------CceEEeeCC--CcEEEECCCCeEEEEeCCC
Q 040805          185 IANPQTFVTPTHL---DADAVFFVSWGQGTITVIREN-------NRESYNVKR--GDIIRVPSGNTFYVTNTDD  246 (540)
Q Consensus       185 ~l~Pggl~~Ph~~---~A~ei~yV~~G~g~ig~V~~~-------~~~~~~l~~--GDv~~iPaG~~h~~~N~g~  246 (540)
                      .-.+|.++-.|++   .-..+++|+.|+...-+|+..       ....+.|.+  +-.++||+|+.|-+.+.++
T Consensus        50 ~S~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d  123 (176)
T TIGR01221        50 KSYKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSD  123 (176)
T ss_pred             EecCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCC
Confidence            4477888888885   268999999999999999853       113567765  6699999999999999874

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional

Probab=92.66  E-value=14  Score=38.18  Aligned_cols=59  Identities=20%  Similarity=0.256  Sum_probs=40.5

Q ss_pred             cccccccCCCeE-EEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC-CCccEEEE
Q 040805          191 FVTPTHLDADAV-FFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD-DDEKLYIV  253 (540)
Q Consensus       191 l~~Ph~~~A~ei-~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g-~~e~l~~v  253 (540)
                      +-.+.+....|+ +..+.|+++|.+    +.+++.|.+.|.++||.|...+..... ...++++.
T Consensus        65 ~~~~~fl~rrE~giV~lgG~~~V~v----dG~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~  125 (276)
T PRK00924         65 LGVSYFLERRELGIINIGGAGTVTV----DGETYELGHRDALYVGKGAKEVVFASADAANPAKFY  125 (276)
T ss_pred             ccceeecCCcEEEEEEccceEEEEE----CCEEEecCCCcEEEECCCCcEEEEEecCCCCCcEEE
Confidence            334455666665 677888888886    446788999999999999886666422 12355554

>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1

Probab=92.44  E-value=1.7  Score=41.71  Aligned_cols=81  Identities=15%  Similarity=0.040  Sum_probs=54.6

Q ss_pred             cceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCc---------eEEeeCCCcEEEECCCCeEEEEeCCCC
Q 040805          178 KYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNR---------ESYNVKRGDIIRVPSGNTFYVTNTDDD  247 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~---------~~~~l~~GDv~~iPaG~~h~~~N~g~~  247 (540)
                      .+-+.++.-.||....+|=| .+..++.|++|...-........         ....+..|.+++++.+.+|-+.|.+.+
T Consensus        74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~  153 (175)
T PF05995_consen   74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD  153 (175)
T ss_dssp             T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred             CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence            45566778999999888856 58889999999988877654322         234578888889999999999998756


Q ss_pred             ccEEEEEEeec
Q 040805          248 EKLYIVKFIKS  258 (540)
Q Consensus       248 e~l~~v~i~~~  258 (540)
                      ++++-|=++.|
T Consensus       154 ~~avSLHvYsp  164 (175)
T PF05995_consen  154 EPAVSLHVYSP  164 (175)
T ss_dssp             S-EEEEEEEES
T ss_pred             CCEEEEEEcCC
Confidence            66665555533

13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=92.23  E-value=0.56  Score=50.98  Aligned_cols=52  Identities=21%  Similarity=0.307  Sum_probs=34.0

Q ss_pred             cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805          197 LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       197 ~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i  255 (540)
                      .|.++++||.+|++++..    .--...+++||+++||+|+.+.+.=.+   +++.+.+
T Consensus       144 aDGD~Li~~q~G~l~l~T----e~G~L~v~pGd~~VIPRG~~~rv~l~~---p~rgyi~  195 (424)
T PF04209_consen  144 ADGDELIFPQQGSLRLET----EFGRLDVRPGDYVVIPRGTRFRVELPG---PARGYII  195 (424)
T ss_dssp             SSEEEEEEEEES-EEEEE----TTEEEEE-TTEEEEE-TT--EEEE-SS---SEEEEEE
T ss_pred             CCCCEEEEEEECCEEEEe----cCeeEEEcCCeEEEECCeeEEEEEeCC---CceEEEE
Confidence            378999999999997764    122467999999999999999886653   4555433

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=91.86  E-value=0.58  Score=50.87  Aligned_cols=79  Identities=10%  Similarity=0.140  Sum_probs=47.6

Q ss_pred             CCCCCCccccceEEEEEEcCCCc-ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEee
Q 040805          364 NDFRPLEDLDITVSYANISKGAM-AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSS  442 (540)
Q Consensus       364 ~~~p~L~~l~isv~~~~L~pggm-~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (540)
                      ..-|.++. ||++.....+ .+| -.-.+|.++++++||-+|++++.-..                         -.+  
T Consensus       116 ~gd~~~~~-g~ai~~y~~~-~sM~~~~f~NaDGD~Li~~q~G~l~l~Te~-------------------------G~L--  166 (424)
T PF04209_consen  116 AGDPLSNN-GVAIHVYAAN-ASMDDRAFRNADGDELIFPQQGSLRLETEF-------------------------GRL--  166 (424)
T ss_dssp             ECECCCTE-EEEEEEEEE--S---SEEEEESSEEEEEEEEES-EEEEETT-------------------------EEE--
T ss_pred             CccccccC-CcEEEEEEcC-CCCCCcceEcCCCCEEEEEEECCEEEEecC-------------------------eeE--
Confidence            33444433 5555444433 455 56677999999999999999987333                         234  


Q ss_pred             eeCCCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805          443 RIRTDSAYIVPAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       443 ~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F  473 (540)
                      .+++||++|||+|..+.+.-.  .+.....+
T Consensus       167 ~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~  195 (424)
T PF04209_consen  167 DVRPGDYVVIPRGTRFRVELP--GPARGYII  195 (424)
T ss_dssp             EE-TTEEEEE-TT--EEEE-S--SSEEEEEE
T ss_pred             EEcCCeEEEECCeeEEEEEeC--CCceEEEE
Confidence            599999999999999887655  35555444

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1

Probab=91.84  E-value=0.79  Score=43.39  Aligned_cols=72  Identities=15%  Similarity=0.113  Sum_probs=43.0

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEec-C------CceEEeeCCCcEEEECCCCeEEEEeCCCCccE
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRE-N------NRESYNVKRGDIIRVPSGNTFYVTNTDDDEKL  250 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~-~------~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l  250 (540)
                      ..++.+..+.||+...||.-.....     =+..++++.| .      +.+++..++|.+|++=....|+..|.++.  -
T Consensus        79 ~~~~~~s~l~pg~~I~pH~d~~~~~-----lR~Hl~L~~p~~~~~~~v~~~~~~w~~G~~~~fD~s~~H~~~N~~~~--~  151 (163)
T PF05118_consen   79 LGRVRFSRLPPGTHIKPHRDPTNLR-----LRLHLPLIVPNPGCYIRVGGETRHWREGECWVFDDSFEHEVWNNGDE--D  151 (163)
T ss_dssp             CEEEEEEEEECTEEEEEE-SS-TTE-----EEEEEEEC--STTEEEEETTEEEB--CTEEEEE-TTS-EEEEESSSS---
T ss_pred             hhhEEEEEECCCCEECCeeCCCCcc-----eEEEEEEEcCCCCeEEEECCeEEEeccCcEEEEeCCEEEEEEeCCCC--C
Confidence            3456777889999999997322211     1333444443 2      34678999999999999999999999854  3


Q ss_pred             EEEEEe
Q 040805          251 YIVKFI  256 (540)
Q Consensus       251 ~~v~i~  256 (540)
                      +++.++
T Consensus       152 Rv~L~v  157 (163)
T PF05118_consen  152 RVVLIV  157 (163)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            344344

14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=91.69  E-value=0.18  Score=43.80  Aligned_cols=25  Identities=28%  Similarity=0.480  Sum_probs=19.7

Q ss_pred             EEeeCCCcEEEECCCCeEEEEeCCC
Q 040805          222 SYNVKRGDIIRVPSGNTFYVTNTDD  246 (540)
Q Consensus       222 ~~~l~~GDv~~iPaG~~h~~~N~g~  246 (540)
                      ...-++||+|++|+|+.|++.|.|.
T Consensus        82 ~~~Q~~Ge~V~i~pg~~H~v~n~g~  106 (114)
T PF02373_consen   82 RFVQKPGEFVFIPPGAYHQVFNLGD  106 (114)
T ss_dssp             EEEEETT-EEEE-TT-EEEEEESSS
T ss_pred             cceECCCCEEEECCCceEEEEeCCc
Confidence            4578999999999999999999984

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=91.67  E-value=0.74  Score=48.73  Aligned_cols=72  Identities=14%  Similarity=0.265  Sum_probs=49.9

Q ss_pred             ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEE
Q 040805          177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIV  253 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v  253 (540)
                      ..+.+-.+.+.+|....--..+.+.|+.|++|+|++..   +......|.+|||++|||.+...+..++  +++.++
T Consensus       331 ~eF~v~~~~v~~g~~~~~~~~~~~SIllv~~G~g~l~~---~t~~~~~v~rG~V~fI~a~~~i~~~~~s--d~~~~y  402 (411)
T KOG2757|consen  331 EEFAVLETKVPTGESYKFPGVDGPSILLVLKGSGILKT---DTDSKILVNRGDVLFIPANHPIHLSSSS--DPFLGY  402 (411)
T ss_pred             cceeEEEeecCCCceEEeecCCCceEEEEEecceEEec---CCCCceeeccCcEEEEcCCCCceeeccC--cceeee
Confidence            33444444667765533334678899999999998775   2245678999999999999888665543  345443

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=91.56  E-value=1.2  Score=44.17  Aligned_cols=71  Identities=11%  Similarity=0.125  Sum_probs=56.0

Q ss_pred             EEEEEEcCCC-cccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC
Q 040805          376 VSYANISKGA-MAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA  454 (540)
Q Consensus       376 v~~~~L~pgg-m~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa  454 (540)
                      =..+++.|+| --.|.=.++|..++||++|+..+.+-.                         ++  +.|++|+-.++|+
T Consensus        63 qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G-------------------------~t--h~l~eggyaylPp  115 (264)
T COG3257          63 QYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEG-------------------------KT--HALREGGYAYLPP  115 (264)
T ss_pred             hheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcC-------------------------eE--EEeccCCeEEeCC
Confidence            3467887877 667777789999999999988776422                         12  4799999999999


Q ss_pred             CCeEEEEecCCCCEEEEEE
Q 040805          455 GHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       455 G~~h~~~n~~~e~l~~v~F  473 (540)
                      |..+...|...++..|-.+
T Consensus       116 gs~~~~~N~~~~~~rfhw~  134 (264)
T COG3257         116 GSGWTLRNAQKEDSRFHWI  134 (264)
T ss_pred             CCcceEeeccCCceEEEEE
Confidence            9999999887777776655

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=90.91  E-value=1.3  Score=41.40  Aligned_cols=61  Identities=13%  Similarity=0.119  Sum_probs=38.8

Q ss_pred             EEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeE
Q 040805          379 ANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPV  458 (540)
Q Consensus       379 ~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h  458 (540)
                      +.=.|+.-.-=|+| -+.|+.|-++|...+.|+..+.                       .-+-.+++||+|.+|++.||
T Consensus        38 vVGGPN~R~DyHin-e~eE~FyQ~kG~m~Lkv~e~g~-----------------------~kdi~I~EGe~fLLP~~vpH   93 (151)
T PF06052_consen   38 VVGGPNQRTDYHIN-ETEEFFYQLKGDMCLKVVEDGK-----------------------FKDIPIREGEMFLLPANVPH   93 (151)
T ss_dssp             EEESSB--SSEEE--SS-EEEEEEES-EEEEEEETTE-----------------------EEEEEE-TTEEEEE-TT--E
T ss_pred             EEcCCCCCCccccC-CcceEEEEEeCcEEEEEEeCCc-----------------------eEEEEeCCCcEEecCCCCCC
Confidence            33456666666775 3668999999999999998632                       22458999999999999999


Q ss_pred             EEEec
Q 040805          459 VTVAS  463 (540)
Q Consensus       459 ~~~n~  463 (540)
                      .=.-.
T Consensus        94 sP~R~   98 (151)
T PF06052_consen   94 SPQRP   98 (151)
T ss_dssp             EEEE-
T ss_pred             CCcCC
Confidence            86544

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=90.81  E-value=1.7  Score=46.12  Aligned_cols=67  Identities=18%  Similarity=0.352  Sum_probs=48.9

Q ss_pred             cceEEEEEEcCCCc-ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          373 DITVSYANISKGAM-AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       373 ~isv~~~~L~pggm-~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      +..+-.+++..|.- ..|.-  +...|..|++|+|++..-.  +                      ..  ..+++|||++
T Consensus       332 eF~v~~~~v~~g~~~~~~~~--~~~SIllv~~G~g~l~~~t--~----------------------~~--~~v~rG~V~f  383 (411)
T KOG2757|consen  332 EFAVLETKVPTGESYKFPGV--DGPSILLVLKGSGILKTDT--D----------------------SK--ILVNRGDVLF  383 (411)
T ss_pred             ceeEEEeecCCCceEEeecC--CCceEEEEEecceEEecCC--C----------------------Cc--eeeccCcEEE
Confidence            36677777777765 45554  7888999999999997432  1                      11  2589999999


Q ss_pred             ECCCCeEEEEecCCCCE
Q 040805          452 VPAGHPVVTVASQNNNL  468 (540)
Q Consensus       452 VPaG~~h~~~n~~~e~l  468 (540)
                      ||+.++..+.++ ++.+
T Consensus       384 I~a~~~i~~~~~-sd~~  399 (411)
T KOG2757|consen  384 IPANHPIHLSSS-SDPF  399 (411)
T ss_pred             EcCCCCceeecc-Ccce
Confidence            999999976655 4443

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=90.81  E-value=1  Score=48.63  Aligned_cols=59  Identities=10%  Similarity=0.192  Sum_probs=42.9

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEE
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVT  242 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~  242 (540)
                      .+.+..+.+.++...++.  +...|++|++|++++..    +..++.|++|++++||++...+..
T Consensus       320 ~F~~~~~~l~~~~~~~~~--~~~~Illv~~G~~~i~~----~~~~~~l~~G~~~fipa~~~~~~~  378 (389)
T PRK15131        320 DFAFSLHDLSDQPTTLSQ--QSAAILFCVEGEAVLWK----GEQQLTLKPGESAFIAANESPVTV  378 (389)
T ss_pred             CcEEEEEEECCceEEecC--CCcEEEEEEcceEEEEe----CCeEEEECCCCEEEEeCCCccEEE
Confidence            345555566655443432  57799999999998753    345688999999999998876665

>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A

Probab=90.70  E-value=1.7  Score=37.44  Aligned_cols=92  Identities=14%  Similarity=0.068  Sum_probs=40.9

Q ss_pred             EEEcCCCcccccccCCCcE--EEEEE--eceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC
Q 040805          379 ANISKGAMAAPFYNSRSTK--VAVVV--AGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA  454 (540)
Q Consensus       379 ~~L~pggm~~PH~h~~A~e--i~yV~--~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa  454 (540)
                      ....+|+...+|.|++|.-  +.||-  .+.+.+.+..|..........    ............+....++||++++|+
T Consensus         5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~p~~G~lvlFPs   80 (101)
T PF13759_consen    5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPF----DNYDQNDLNSPYYIVEPEEGDLVLFPS   80 (101)
T ss_dssp             EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS--------TTTTCCC-SEEEE---TTEEEEEET
T ss_pred             EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccc----cccccCcccCceEEeCCCCCEEEEeCC
Confidence            3456889999999999864  44443  244556666665421000000    000000011134446789999999999


Q ss_pred             CCeEEEEe-cCCCCEEEEEEE
Q 040805          455 GHPVVTVA-SQNNNLEVVCFE  474 (540)
Q Consensus       455 G~~h~~~n-~~~e~l~~v~F~  474 (540)
                      -..|.... .++++-.-|+|+
T Consensus        81 ~l~H~v~p~~~~~~RisisfN  101 (101)
T PF13759_consen   81 WLWHGVPPNNSDEERISISFN  101 (101)
T ss_dssp             TSEEEE----SSS-EEEEEEE
T ss_pred             CCEEeccCcCCCCCEEEEEcC
Confidence            99998754 334344446663

>PF12852 Cupin_6: Cupin

Probab=90.47  E-value=0.95  Score=43.21  Aligned_cols=44  Identities=16%  Similarity=0.315  Sum_probs=33.9

Q ss_pred             CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEec
Q 040805          395 STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS  463 (540)
Q Consensus       395 A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~  463 (540)
                      ...+.+|++|.+++.+-.. +                      ..  ..|++||++++|+|.+|++..+
T Consensus        35 ~~~fh~V~~G~~~l~~~~~-~----------------------~~--~~L~~GDivllp~g~~H~l~~~   78 (186)
T PF12852_consen   35 GASFHVVLRGSCWLRVPGG-G----------------------EP--IRLEAGDIVLLPRGTAHVLSSD   78 (186)
T ss_pred             ceEEEEEECCeEEEEEcCC-C----------------------Ce--EEecCCCEEEEcCCCCeEeCCC
Confidence            3678899999999984331 1                      12  3699999999999999998544

>TIGR02466 conserved hypothetical protein

Probab=90.43  E-value=1.1  Score=44.08  Aligned_cols=94  Identities=11%  Similarity=0.071  Sum_probs=49.5

Q ss_pred             EEEEcCCCcccccccCCCcE--EEEEE--eceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805          378 YANISKGAMAAPFYNSRSTK--VAVVV--AGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP  453 (540)
Q Consensus       378 ~~~L~pggm~~PH~h~~A~e--i~yV~--~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP  453 (540)
                      .+.+.+||...+|.||++.-  +.||.  .|.|.+.+..|....--..-.+.  ...+....  ..+...-++||++++|
T Consensus       100 ~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~--~~~~~~~~--~~~~v~P~~G~lvlFP  175 (201)
T TIGR02466       100 VNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRI--PNAKRAVQ--RFVYVPPQEGRVLLFE  175 (201)
T ss_pred             EEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhcccccc--CccccccC--ccEEECCCCCeEEEEC
Confidence            34557899999999999843  44544  23344444444321000000000  00000000  1122356999999999


Q ss_pred             CCCeEEEEe-cCCCCEEEEEEEe
Q 040805          454 AGHPVVTVA-SQNNNLEVVCFEI  475 (540)
Q Consensus       454 aG~~h~~~n-~~~e~l~~v~F~~  475 (540)
                      .-+.|.... .+++.-.-|+|+.
T Consensus       176 S~L~H~v~p~~~~~~RISiSFNl  198 (201)
T TIGR02466       176 SWLRHEVPPNESEEERISVSFNY  198 (201)
T ss_pred             CCCceecCCCCCCCCEEEEEEee
Confidence            999997654 3444444477854

This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.

>KOG3706 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.30  E-value=0.18  Score=54.87  Aligned_cols=57  Identities=14%  Similarity=0.219  Sum_probs=44.8

Q ss_pred             CCCcc-ccccccCCCeEEEEEeeEEEEEEEecCCce---------------------EEeeCCCcEEEECCCCeEEEEe
Q 040805          187 NPQTF-VTPTHLDADAVFFVSWGQGTITVIRENNRE---------------------SYNVKRGDIIRVPSGNTFYVTN  243 (540)
Q Consensus       187 ~Pggl-~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~---------------------~~~l~~GDv~~iPaG~~h~~~N  243 (540)
                      .||+- +.|||-+-+..+.=++|+-..-+-.|..+.                     .+.|++||+++||+|++|--.-
T Consensus       325 PagSqGfaPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t  403 (629)
T KOG3706|consen  325 PAGSQGFAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADT  403 (629)
T ss_pred             CCCCCCCCCchhhhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeeccc
Confidence            45543 589999988888889999888887776331                     1489999999999999998644

>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=89.92  E-value=3.4  Score=39.79  Aligned_cols=61  Identities=11%  Similarity=0.043  Sum_probs=48.0

Q ss_pred             CCCccccccccC-C-CeEEEEEeeEEEEEEEecCCc-------eEEeeCC--CcEEEECCCCeEEEEeCCCC
Q 040805          187 NPQTFVTPTHLD-A-DAVFFVSWGQGTITVIRENNR-------ESYNVKR--GDIIRVPSGNTFYVTNTDDD  247 (540)
Q Consensus       187 ~Pggl~~Ph~~~-A-~ei~yV~~G~g~ig~V~~~~~-------~~~~l~~--GDv~~iPaG~~h~~~N~g~~  247 (540)
                      .||.++--||+. - .+++.|+.|++..-+|+-...       ....|.+  .-++.||+|++|-+.|.+++
T Consensus        53 ~~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~  124 (173)
T COG1898          53 YPGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDD  124 (173)
T ss_pred             cCCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCc
Confidence            399998888864 3 699999999999999985422       2335544  48999999999999999854

>PF14861 Antimicrobial21: Plant antimicrobial peptide

Probab=89.88  E-value=0.38  Score=33.14  Aligned_cols=27  Identities=30%  Similarity=0.802  Sum_probs=22.1

Q ss_pred             hHHHHHHHHHhhccCHHHHHHHHHHHHHH
Q 040805           30 LKQCKHQCRARQQYDEKQKEQCARTCEEY   58 (540)
Q Consensus        30 ~~~c~~~c~~~~~~~~~~~~~c~~~c~~~   58 (540)
                      -..|.++|+...  |.-.|++|++.|+.+
T Consensus         4 ~~~C~k~Cqhh~--D~~~kq~Cv~~C~rr   30 (31)
T PF14861_consen    4 RDRCRKQCQHHR--DPWRKQQCVQDCRRR   30 (31)
T ss_pred             chHHHHHhhccc--CHHHHHHHHHHHHhc
Confidence            457999996654  888899999999864

>PRK05341 homogentisate 1,2-dioxygenase; Provisional

Probab=88.79  E-value=2.3  Score=46.39  Aligned_cols=62  Identities=13%  Similarity=0.208  Sum_probs=48.3

Q ss_pred             cceEEEEEEcCCCc-ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          373 DITVSYANISKGAM-AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       373 ~isv~~~~L~pggm-~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      |+++.....+. +| -.-.+|.++++++|+-+|.+.+.--.-                         ++  .+++||++|
T Consensus       132 G~ai~~y~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEfG-------------------------~L--~v~pgei~V  183 (438)
T PRK05341        132 GMAIHLYAANR-SMQDRYFYNADGELLIVPQQGRLRLATELG-------------------------VL--DVEPGEIAV  183 (438)
T ss_pred             ccEEEEEeCCC-CcccceeecCCCCEEEEEEeCCEEEEEecc-------------------------ce--EecCCCEEE
Confidence            56666555555 66 677789999999999999999874432                         23  689999999


Q ss_pred             ECCCCeEEEEe
Q 040805          452 VPAGHPVVTVA  462 (540)
Q Consensus       452 VPaG~~h~~~n  462 (540)
                      ||+|..+.+.-
T Consensus       184 IPRG~~frv~l  194 (438)
T PRK05341        184 IPRGVKFRVEL  194 (438)
T ss_pred             EcCccEEEEec
Confidence            99999987663

>PLN02288 mannose-6-phosphate isomerase

Probab=88.47  E-value=0.99  Score=48.87  Aligned_cols=62  Identities=23%  Similarity=0.441  Sum_probs=43.1

Q ss_pred             cccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeE
Q 040805          176 LEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTF  239 (540)
Q Consensus       176 i~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h  239 (540)
                      +..+.+..+.+.++......-.+.+.|++|++|++++..  .+...+..|++|++++||++...
T Consensus       331 ~~eF~v~~~~l~~~~~~~~~~~~gp~Illv~~G~~~i~~--~~~~~~~~l~~G~~~fv~a~~~~  392 (394)
T PLN02288        331 FDEFEVDHCDVPPGASVVFPAVPGPSVFLVIEGEGVLST--GSSEDGTAAKRGDVFFVPAGTEI  392 (394)
T ss_pred             CcceEEEEEEeCCCCeEeecCCCCCEEEEEEcCEEEEec--CCccceEEEeceeEEEEeCCCcc
Confidence            455667777887775322111567899999999998753  22223477999999999998653

>PRK09685 DNA-binding transcriptional activator FeaR; Provisional

Probab=87.90  E-value=2.4  Score=43.30  Aligned_cols=63  Identities=14%  Similarity=0.150  Sum_probs=42.7

Q ss_pred             ceeeeeeeCCCccc-cccc---c--CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          179 YRLGILIANPQTFV-TPTH---L--DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       179 ~rl~~~~l~Pggl~-~Ph~---~--~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      ++++.+...|..+. .+.+   .  +.-.++++++|.+.+..    +...+.|.+||++++|++.+|.+.-.+
T Consensus        45 ~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~----~g~~~~l~~G~~~l~~~~~p~~~~~~~  113 (302)
T PRK09685         45 LKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ----DDRQVQLAAGDITLIDASRPCSIYPQG  113 (302)
T ss_pred             EEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEE----CCeEEEEcCCCEEEEECCCCcEeecCC
Confidence            44544566776443 2232   1  22345678899888776    456789999999999999999876544

>TIGR01015 hmgA homogentisate 1,2-dioxygenase

Probab=87.87  E-value=2.7  Score=45.77  Aligned_cols=63  Identities=14%  Similarity=0.239  Sum_probs=48.5

Q ss_pred             cceEEEEEEcCCCc-ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          373 DITVSYANISKGAM-AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       373 ~isv~~~~L~pggm-~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      ||++.....+. +| -.-.+|.++++++|+-+|.+.+.--.-                         ++  .|++||++|
T Consensus       126 G~ai~iy~~~~-sM~~~~f~NaDGD~Livpq~G~l~i~TEfG-------------------------~L--~v~pgei~V  177 (429)
T TIGR01015       126 GLAIHIYLCNA-SMENRAFYNADGDFLIVPQQGALLITTEFG-------------------------RL--LVEPNEICV  177 (429)
T ss_pred             CceEEEEeCCC-CcccceeeccCCCEEEEEEeCcEEEEEecc-------------------------ce--EecCCCEEE
Confidence            56665555554 67 677889999999999999999874332                         22  589999999


Q ss_pred             ECCCCeEEEEec
Q 040805          452 VPAGHPVVTVAS  463 (540)
Q Consensus       452 VPaG~~h~~~n~  463 (540)
                      ||+|..+.+.-.
T Consensus       178 IPRG~~frv~l~  189 (429)
T TIGR01015       178 IPRGVRFRVTVL  189 (429)
T ss_pred             ecCccEEEEeeC
Confidence            999999876544

Missing in human disease alkaptonuria.

>PLN02658 homogentisate 1,2-dioxygenase

Probab=87.85  E-value=2.7  Score=45.77  Aligned_cols=67  Identities=16%  Similarity=0.228  Sum_probs=49.2

Q ss_pred             CCCCccccceEEEEEEcCCCc-ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeee
Q 040805          366 FRPLEDLDITVSYANISKGAM-AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRI  444 (540)
Q Consensus       366 ~p~L~~l~isv~~~~L~pggm-~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  444 (540)
                      -|.++. ||++.....+. +| -.-.+|.++++++|+-+|.+.+.--.-                         ++  .|
T Consensus       119 D~~~~~-G~ai~iy~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEfG-------------------------~L--~v  169 (435)
T PLN02658        119 SPFLRH-GYAIHMYVANK-SMDDCAFCNADGDFLIVPQQGRLWIKTELG-------------------------KL--QV  169 (435)
T ss_pred             Cccccc-CcEEEEEeCCC-CCccceeecCCCCEEEEEEeCCEEEEEecc-------------------------ce--Ee
Confidence            344432 66665555444 66 455889999999999999999874432                         23  58


Q ss_pred             CCCcEEEECCCCeEEEE
Q 040805          445 RTDSAYIVPAGHPVVTV  461 (540)
Q Consensus       445 ~~GDV~vVPaG~~h~~~  461 (540)
                      ++||++|||+|..+.+.
T Consensus       170 ~pgei~VIPRG~~frv~  186 (435)
T PLN02658        170 SPGEIVVIPRGFRFAVD  186 (435)
T ss_pred             cCCCEEEecCccEEEEe
Confidence            99999999999998765

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=87.73  E-value=1.4  Score=38.53  Aligned_cols=62  Identities=15%  Similarity=0.256  Sum_probs=41.5

Q ss_pred             eeeCCCccc-cccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEE
Q 040805          184 LIANPQTFV-TPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIV  253 (540)
Q Consensus       184 ~~l~Pggl~-~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v  253 (540)
                      +.|+||+-+ +|.-...+.++||++|.+.++    +.  ...|.+|+++++..|....+.+.+  +..+++
T Consensus         4 i~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~----~~--~~~~~~~~~~~l~~g~~i~~~a~~--~~a~~l   66 (104)
T PF05726_consen    4 IKLEPGASFTLPLPPGHNAFIYVLEGSVEVG----GE--EDPLEAGQLVVLEDGDEIELTAGE--EGARFL   66 (104)
T ss_dssp             EEE-TT-EEEEEEETT-EEEEEEEESEEEET----TT--TEEEETTEEEEE-SECEEEEEESS--SSEEEE
T ss_pred             EEECCCCEEEeecCCCCEEEEEEEECcEEEC----CC--cceECCCcEEEECCCceEEEEECC--CCcEEE
Confidence            478999754 443345678999999997543    11  267999999999998888888874  344444

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>PLN02658 homogentisate 1,2-dioxygenase

Probab=87.40  E-value=1.8  Score=47.05  Aligned_cols=55  Identities=20%  Similarity=0.234  Sum_probs=39.8

Q ss_pred             eeCCCcccccc-c--cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe
Q 040805          185 IANPQTFVTPT-H--LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN  243 (540)
Q Consensus       185 ~l~Pggl~~Ph-~--~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N  243 (540)
                      ...++...... +  .|.++++|+.+|.+.|..-.  +  ...|++||+++||+|+.+.+.=
T Consensus       130 iy~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEf--G--~L~v~pgei~VIPRG~~frv~l  187 (435)
T PLN02658        130 MYVANKSMDDCAFCNADGDFLIVPQQGRLWIKTEL--G--KLQVSPGEIVVIPRGFRFAVDL  187 (435)
T ss_pred             EEeCCCCCccceeecCCCCEEEEEEeCCEEEEEec--c--ceEecCCCEEEecCccEEEEec
Confidence            33555443233 2  47899999999999776521  1  3578999999999999988754

>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria

Probab=86.54  E-value=2.4  Score=33.95  Aligned_cols=57  Identities=19%  Similarity=0.283  Sum_probs=43.5

Q ss_pred             eeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe
Q 040805          184 LIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN  243 (540)
Q Consensus       184 ~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N  243 (540)
                      +.|.||..+.. ...+...+-|.+|+.-++.  .+....+-|.+||.+.+|+|--.|+..
T Consensus         2 ~~L~~g~~~~l-r~~~~~~l~v~~G~vWlT~--~g~~~D~~L~~G~~l~l~~g~~vvl~a   58 (63)
T PF11142_consen    2 FELAPGETLSL-RAAAGQRLRVESGRVWLTR--EGDPDDYWLQAGDSLRLRRGGRVVLSA   58 (63)
T ss_pred             EEeCCCceEEe-EcCCCcEEEEccccEEEEC--CCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence            46677765333 3445555999999998887  456677899999999999999888865

>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]

Probab=85.27  E-value=1.6  Score=42.98  Aligned_cols=49  Identities=14%  Similarity=0.321  Sum_probs=43.7

Q ss_pred             cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          197 LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       197 ~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      ...+||+|-.+|...+-+|..+..+...+++||++.+|+.++|.-+--.
T Consensus        51 eegeE~FyQ~KGdMvLKVie~g~~rDivI~qGe~flLParVpHSPqRFa   99 (279)
T KOG3995|consen   51 EEGEEVFYQLKGDMVLKVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFA   99 (279)
T ss_pred             CCcchhheeecCceEEeeeccCcceeeEEecCcEEEeccCCCCChhhhc
Confidence            3689999999999999999999888899999999999999999865443

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=84.67  E-value=3.7  Score=42.69  Aligned_cols=61  Identities=13%  Similarity=0.146  Sum_probs=42.0

Q ss_pred             ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe
Q 040805          177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN  243 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N  243 (540)
                      ..+.+..+.+... .... -.+...+++|++|++++..    ...++.|++|++++|||+...+...
T Consensus       233 ~~F~~~~~~~~~~-~~~~-~~~~~~il~v~~G~~~i~~----~~~~~~l~~G~~~~ipa~~~~~~i~  293 (302)
T TIGR00218       233 EYFSVYKWDISGK-AEFI-QQQSALILSVLEGSGRIKS----GGKTLPLKKGESFFIPAHLGPFTIE  293 (302)
T ss_pred             CCeEEEEEEeCCc-eeec-cCCCcEEEEEEcceEEEEE----CCEEEEEecccEEEEccCCccEEEE
Confidence            3444555566543 2111 1357789999999998753    3457889999999999998666554

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>COG3542 Uncharacterized conserved protein [Function unknown]

Probab=84.41  E-value=22  Score=33.43  Aligned_cols=82  Identities=18%  Similarity=0.343  Sum_probs=50.3

Q ss_pred             eeeCCCcccccccc--CCCeEEEEEee-EEEEEEEecCCceEE----eeCCCcE--EEECCCCeEEE-EeCCCCccEEEE
Q 040805          184 LIANPQTFVTPTHL--DADAVFFVSWG-QGTITVIRENNRESY----NVKRGDI--IRVPSGNTFYV-TNTDDDEKLYIV  253 (540)
Q Consensus       184 ~~l~Pggl~~Ph~~--~A~ei~yV~~G-~g~ig~V~~~~~~~~----~l~~GDv--~~iPaG~~h~~-~N~g~~e~l~~v  253 (540)
                      +-|+++.+  -|||  +|++|.+...| ...+.++.+|...++    +|+.|.+  ++||+|+-..- .-.|++ ..-+=
T Consensus        49 yLLe~~~~--s~~HRv~a~eiwHf~ag~pl~~~l~~dG~~~s~~LG~d~~~Ge~~Q~vVP~g~w~aS~~~~g~~-~tLVg  125 (162)
T COG3542          49 YLLEEDNI--SAWHRVTADEIWHFYAGAPLELHLSEDGGAESFTLGPDLEKGERPQYVVPAGTWWASAVSLGED-YTLVG  125 (162)
T ss_pred             EEecCCcc--chheecchhheEEEecCCceEEEEEeCCCeEEEEecccccCCceeEEEEeCCcEEEEEEecCCC-ceEEE
Confidence            45677763  4454  58999888877 578888887766665    6788876  78999954322 122212 22222


Q ss_pred             EEeecCCCCC-cccccccCC
Q 040805          254 KFIKSINLPG-QYEAFYGAG  272 (540)
Q Consensus       254 ~i~~~~~~pg-~~~~f~LaG  272 (540)
                      |...    || .|..|-||-
T Consensus       126 CtVa----PGFdF~~Fela~  141 (162)
T COG3542         126 CTVA----PGFDFEDFELAE  141 (162)
T ss_pred             EEec----CCccchhccccC
Confidence            3332    55 477787774

>COG2850 Uncharacterized conserved protein [Function unknown]

Probab=84.20  E-value=1.7  Score=46.25  Aligned_cols=97  Identities=15%  Similarity=0.195  Sum_probs=57.0

Q ss_pred             CCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceE--EEEEEcCCCCCCcccccccCCCccccCCccceEEeee
Q 040805          366 FRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDG--YIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSR  443 (540)
Q Consensus       366 ~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g--~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (540)
                      +|.-+.-++.|+  -..+||-+.|||-+   -=+|+++|.|  |..|-.+-.... -.. ..-   -.....-+-.++..
T Consensus       113 lP~wr~ddiMIS--~a~~GGgvg~H~D~---YDVfliQg~G~RRW~v~~~~~~~~-~~~-~~d---~~~~~~f~~~~d~v  182 (383)
T COG2850         113 LPDWRIDDIMIS--FAAPGGGVGPHFDQ---YDVFLIQGQGRRRWRVGKKCNMST-LCP-HPD---LLILAPFEPDIDEV  182 (383)
T ss_pred             CccccccceEEE--EecCCCccCccccc---hheeEEeecccceeecCCcccccC-cCC-Ccc---hhhcCCCCchhhhh
Confidence            566666677777  56799999999943   3356667655  555544422110 000 000   00000111234556


Q ss_pred             eCCCcEEEECCCCeEEEEecCCCCEEE-EEE
Q 040805          444 IRTDSAYIVPAGHPVVTVASQNNNLEV-VCF  473 (540)
Q Consensus       444 l~~GDV~vVPaG~~h~~~n~~~e~l~~-v~F  473 (540)
                      |.+|||++||+|++|+=++- ++-+.+ |+|
T Consensus       183 lepGDiLYiPp~~~H~gvae-~dc~tySvG~  212 (383)
T COG2850         183 LEPGDILYIPPGFPHYGVAE-DDCMTYSVGF  212 (383)
T ss_pred             cCCCceeecCCCCCcCCccc-ccccceeeec
Confidence            89999999999999998887 444555 455

>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length

Probab=83.57  E-value=11  Score=32.70  Aligned_cols=66  Identities=18%  Similarity=0.194  Sum_probs=44.8

Q ss_pred             eeeeCCCccccccc-cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          183 ILIANPQTFVTPTH-LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       183 ~~~l~Pggl~~Ph~-~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      +-.|.||..   ++ ..+.|+.-|++|...+-+  |+...-..+.+|+.|.||++.-+-+.-.   +...++|.+
T Consensus        27 lGVm~pGeY---~F~T~~~E~M~vvsG~l~V~l--pg~~ew~~~~aGesF~VpanssF~v~v~---~~~~Y~C~y   93 (94)
T PF06865_consen   27 LGVMLPGEY---TFGTSAPERMEVVSGELEVKL--PGEDEWQTYSAGESFEVPANSSFDVKVK---EPTAYLCSY   93 (94)
T ss_dssp             EEEE-SECE---EEEESS-EEEEEEESEEEEEE--TT-SS-EEEETT-EEEE-TTEEEEEEES---S-EEEEEEE
T ss_pred             EEEEeeeEE---EEcCCCCEEEEEEEeEEEEEc--CCCcccEEeCCCCeEEECCCCeEEEEEC---cceeeEEEe
Confidence            334566652   22 478999999999997777  7666667899999999999999998775   356677654

The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.

>KOG3706 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.16  E-value=0.89  Score=49.65  Aligned_cols=77  Identities=17%  Similarity=0.146  Sum_probs=50.5

Q ss_pred             EEEEEcCCCc--ccccccCCCcEEEEEEeceEEEEEEcCCCCCC-----cccccccCCCccccCCccceEEeeeeCCCcE
Q 040805          377 SYANISKGAM--AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRS-----SSERRHQGSSTREEGSATYHKVSSRIRTDSA  449 (540)
Q Consensus       377 ~~~~L~pggm--~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV  449 (540)
                      +-+.|+|-|-  ++||| -+-...+.=++|+-++.+-.|..+..     || .+-    .+++-+  .-++..-|++||+
T Consensus       319 aNvYLTPagSqGfaPHy-DdIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS-~Nf----~eedlg--ePV~e~vle~GDl  390 (629)
T KOG3706|consen  319 ANVYLTPAGSQGFAPHY-DDIEAFVLQVEGRKHWRLYHPTVPLEELALVSS-DNF----TEEDLG--EPVHEFVLEPGDL  390 (629)
T ss_pred             cceeecCCCCCCCCCch-hhhhhhhheeccceeeEeecCCCcHhhhhhccC-CCC----ChhHhC--CchHHhhcCCCcE
Confidence            4456666554  79999 36666777889999999999976520     00 000    011111  1345667999999


Q ss_pred             EEECCCCeEEEE
Q 040805          450 YIVPAGHPVVTV  461 (540)
Q Consensus       450 ~vVPaG~~h~~~  461 (540)
                      ++||+|++|-..
T Consensus       391 lYfPRG~IHQA~  402 (629)
T KOG3706|consen  391 LYFPRGTIHQAD  402 (629)
T ss_pred             EEecCcceeecc
Confidence            999999999643

>PRK10579 hypothetical protein; Provisional

Probab=82.64  E-value=9.3  Score=33.15  Aligned_cols=64  Identities=11%  Similarity=0.131  Sum_probs=48.4

Q ss_pred             eeCCCccccccc-cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          185 IANPQTFVTPTH-LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       185 ~l~Pggl~~Ph~-~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      .|.||.+   ++ .++.|+.=|++|...+-+  |+...-..+++|+.|-||++..+-+....   ...++|.+
T Consensus        29 Vm~pGey---~F~T~~~E~MeivsG~l~V~L--pg~~ew~~~~aG~sF~VpanssF~l~v~~---~t~Y~C~y   93 (94)
T PRK10579         29 VMAEGEY---TFSTAEPEEMTVISGALNVLL--PGATDWQVYEAGEVFNVPGHSEFHLQVAE---PTSYLCRY   93 (94)
T ss_pred             EEeeeEE---EEcCCCcEEEEEEeeEEEEEC--CCCcccEEeCCCCEEEECCCCeEEEEECc---ceeeEEEc
Confidence            4556552   23 479999999999997776  66666678999999999999999887743   46666643

>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes

Probab=82.60  E-value=19  Score=33.37  Aligned_cols=99  Identities=13%  Similarity=0.142  Sum_probs=57.6

Q ss_pred             cCCceEEEeccCcccccc--cc-ccccceeeeeeeCCCccccccccCCCeEEEEEee-EEEEEEEecCCceE-Ee----e
Q 040805          155 SQHGRVAFLPKFTQRSKL--LR-GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWG-QGTITVIRENNRES-YN----V  225 (540)
Q Consensus       155 ~e~G~i~~l~~f~~~~~~--L~-Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G-~g~ig~V~~~~~~~-~~----l  225 (540)
                      .|+|.++.+-+.+.....  .. .=..+-.-++-|.++.+..-|-.+++|+.|...| ..++-++.|++... ..    +
T Consensus        14 pEGG~fret~rs~~~~~~~~~~~~R~~~T~Iy~LL~~~~~S~~Hrv~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~   93 (139)
T PF06172_consen   14 PEGGYFRETYRSPETVSPPSLGPSRSASTSIYYLLTPGEFSAWHRVDSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDL   93 (139)
T ss_dssp             TTSSEEEEEEE-SSEEECCTCSSCEES-EEEEEEEETTBEEEEEEESSEEEEEEEEES-EEEEEECTTSTEEEEEESSTT
T ss_pred             CCCccEEEEEECCCcccCCCCCCCcccceEEEEEEcCCCCCccEEcCCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCC
Confidence            378888887433221110  00 0112223344577777766666699999999988 68888898886643 33    3


Q ss_pred             CCCc--EEEECCCCeEEEEeCCCCccEEEEE
Q 040805          226 KRGD--IIRVPSGNTFYVTNTDDDEKLYIVK  254 (540)
Q Consensus       226 ~~GD--v~~iPaG~~h~~~N~g~~e~l~~v~  254 (540)
                      .+|.  .++||+|+-+.-...+. ....+|.
T Consensus        94 ~~g~~~q~vVp~G~W~aa~l~~~-~~y~Lvs  123 (139)
T PF06172_consen   94 AAGERPQVVVPAGTWQAAELEPE-GDYSLVS  123 (139)
T ss_dssp             CTTEBSEEEE-TTSEEEEEECES-SSEEEEE
T ss_pred             CCCceEEEEECCCEEEEccccCC-CCEEEEE
Confidence            4553  68999999877744332 2454543

; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.

>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1

Probab=81.73  E-value=11  Score=35.53  Aligned_cols=80  Identities=9%  Similarity=0.128  Sum_probs=47.7

Q ss_pred             ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcC-CCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACP-HVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      ..+....|.||+...||.-+....+      +..+.++.| .+.   .-+-+.            +.  ...++|.++++
T Consensus        80 ~~~~~s~l~pg~~I~pH~d~~~~~l------R~Hl~L~~p~~~~---~~~v~~------------~~--~~w~~G~~~~f  136 (163)
T PF05118_consen   80 GRVRFSRLPPGTHIKPHRDPTNLRL------RLHLPLIVPNPGC---YIRVGG------------ET--RHWREGECWVF  136 (163)
T ss_dssp             EEEEEEEEECTEEEEEE-SS-TTEE------EEEEEEC--STTE---EEEETT------------EE--EB--CTEEEEE
T ss_pred             hhEEEEEECCCCEECCeeCCCCcce------EEEEEEEcCCCCe---EEEECC------------eE--EEeccCcEEEE
Confidence            3478888999999999996654432      244556665 211   000001            22  36799999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEEEec
Q 040805          453 PAGHPVVTVASQNNNLEVVCFEIN  476 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F~~~  476 (540)
                      =..++|+..|.++++-.++.++.-
T Consensus       137 D~s~~H~~~N~~~~~Rv~L~vD~~  160 (163)
T PF05118_consen  137 DDSFEHEVWNNGDEDRVVLIVDFW  160 (163)
T ss_dssp             -TTS-EEEEESSSS-EEEEEEEEE
T ss_pred             eCCEEEEEEeCCCCCEEEEEEEee
Confidence            999999999988877777777643

14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=81.41  E-value=9.9  Score=33.07  Aligned_cols=67  Identities=9%  Similarity=0.107  Sum_probs=45.8

Q ss_pred             EEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCC
Q 040805          377 SYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGH  456 (540)
Q Consensus       377 ~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~  456 (540)
                      ..+.|+||+-+.-...+.-+-++||++|.+.+.   ..                       .   ..+.+|+++++..|-
T Consensus         2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~---~~-----------------------~---~~~~~~~~~~l~~g~   52 (104)
T PF05726_consen    2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG---GE-----------------------E---DPLEAGQLVVLEDGD   52 (104)
T ss_dssp             EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET---TT-----------------------T---EEEETTEEEEE-SEC
T ss_pred             EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC---CC-----------------------c---ceECCCcEEEECCCc
Confidence            357888998875444455567999999998662   11                       1   358899999999888


Q ss_pred             eEEEEecCCCCEEEEEE
Q 040805          457 PVVTVASQNNNLEVVCF  473 (540)
Q Consensus       457 ~h~~~n~~~e~l~~v~F  473 (540)
                      ...+.+.. ++..++.+
T Consensus        53 ~i~~~a~~-~~a~~lll   68 (104)
T PF05726_consen   53 EIELTAGE-EGARFLLL   68 (104)
T ss_dssp             EEEEEESS-SSEEEEEE
T ss_pred             eEEEEECC-CCcEEEEE
Confidence            88877774 67777766

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins

Probab=80.91  E-value=16  Score=30.80  Aligned_cols=60  Identities=17%  Similarity=0.141  Sum_probs=45.1

Q ss_pred             CCccccccccCCCeE--EEEEeeEEEEEEEecCCc---eEEeeCCCcEEEECCCCeEEEEeCCCC
Q 040805          188 PQTFVTPTHLDADAV--FFVSWGQGTITVIRENNR---ESYNVKRGDIIRVPSGNTFYVTNTDDD  247 (540)
Q Consensus       188 Pggl~~Ph~~~A~ei--~yV~~G~g~ig~V~~~~~---~~~~l~~GDv~~iPaG~~h~~~N~g~~  247 (540)
                      |.+++-.|...+..|  +-|++|+..+...++.+.   ....+.+|+..+||+...|.+.-.+++
T Consensus        12 P~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D   76 (82)
T PF09313_consen   12 PAALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDD   76 (82)
T ss_dssp             -GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT
T ss_pred             cHHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCC
Confidence            666767776777766  579999999998887543   456789999999999999999987643

; PDB: 3BB6_C 3M70_A 3DL3_I.

>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=80.86  E-value=6.9  Score=34.65  Aligned_cols=63  Identities=17%  Similarity=0.160  Sum_probs=42.3

Q ss_pred             Ccccccc-ccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCC--CeEEEEeCCCCccEEEEEE
Q 040805          189 QTFVTPT-HLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSG--NTFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       189 ggl~~Ph-~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG--~~h~~~N~g~~e~l~~v~i  255 (540)
                      .++ .+| |.+-+-|.||++|+..-.  +.. .....|++|||-++-||  +.|.-.|.+++.++.++=+
T Consensus        40 ~gf-~~HPH~g~eivTyv~~G~~~H~--Ds~-G~~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQl  105 (107)
T PF02678_consen   40 AGF-PMHPHRGFEIVTYVLEGELRHR--DSL-GNRGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQL  105 (107)
T ss_dssp             TEE-EEEEECSEEEEEEEEESEEEEE--ETT-SEEEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEE
T ss_pred             CCC-CCcCCCCceEEEEEecCEEEEE--CCC-CCeeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEE
Confidence            344 455 446778899999976433  333 34567999999999987  6888899876567877644

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=80.66  E-value=2.9  Score=36.07  Aligned_cols=27  Identities=7%  Similarity=0.004  Sum_probs=19.5

Q ss_pred             EEeeeeCCCcEEEECCCCeEEEEecCC
Q 040805          439 KVSSRIRTDSAYIVPAGHPVVTVASQN  465 (540)
Q Consensus       439 ~~~~~l~~GDV~vVPaG~~h~~~n~~~  465 (540)
                      ..+...++||+++||+|..|+..|.|.
T Consensus        80 ~~~~~Q~~Ge~V~i~pg~~H~v~n~g~  106 (114)
T PF02373_consen   80 VYRFVQKPGEFVFIPPGAYHQVFNLGD  106 (114)
T ss_dssp             -EEEEEETT-EEEE-TT-EEEEEESSS
T ss_pred             cccceECCCCEEEECCCceEEEEeCCc
Confidence            344567899999999999999999874

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	540
1ipk_A	416	Crystal Structures Of Recombinant And Native Soybea		6e-57
1ipj_A	416	Crystal Structures Of Recombinant And Native Soybea		2e-56
3smh_A	418	Crystal Structure Of Major Peanut Allergen Ara H 1		6e-56
3s7e_A	418	Crystal Structure Of Ara H 1 Length = 418		8e-56
1uij_A	416	Crystal Structure Of Soybean Beta-Conglycinin Beta		2e-55
1uik_A	418	Crystal Structure Of Soybean Beta-Conglycinin Alpha		3e-55
2eaa_A	433	Crystal Structure Of Adzuki Bean 7s Globulin-3 Leng		1e-50
2ea7_A	434	Crystal Structure Of Adzuki Bean 7s Globulin-1 Leng		3e-48
2cau_A	445	Canavalin From Jack Bean Length = 445		9e-47
2cv6_A	424	Crystal Structure Of 8salpha Globulin, The Major Se		6e-42
2phl_A	397	The Structure Of Phaseolin At 2.2 Angstroms Resolut		1e-33
1cau_A	181	Determination Of Three Crystal Structures Of Canava		1e-23
1dgr_A	178	Refined Crystal Structure Of Canavalin From Jack Be		5e-23
1cau_B	184	Determination Of Three Crystal Structures Of Canava		1e-14
1dgr_X	79	Refined Crystal Structure Of Canavalin From Jack Be		2e-07
1fxz_A	476	Crystal Structure Of Soybean Proglycinin A1ab1b Hom		7e-05
1ud1_A	476	Crystal Structure Of Proglycinin Mutant C88s Length		7e-05
1ucx_A	476	Crystal Structure Of Proglycinin C12g Mutant Length		7e-05
3kgl_A	466	Crystal Structure Of Procruciferin, 11s Globulin Fr		4e-04

>pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta- Conglycinin Beta Homotrimers Length = 416

Iteration: 1
 Score =  218 bits (555), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 130/391 (33%), Positives = 215/391 (54%), Gaps = 19/391 (4%)
Query: 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITV 214
           +Q+GR+  L +F +RS  L  L  YR+    + P T + P H DAD + FV  G+  +T+
Sbjct: 25  NQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTL 84
Query: 215 IRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGE 274
           +  ++R+SYN+  GD  R+P+G T+Y+ N  D + L I+K    +N PG+Y+ F+ +  +
Sbjct: 85  VNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKIIKLAIPVNKPGRYDDFFLSSTQ 144
Query: 275 NPESFLRAFSWEILESAFKTKRDSLERVLF------QQDQGAMVKASKQQIRALSRSQEG 328
             +S+L+ FS  ILE++F ++ + + RVLF      +Q +G +V+ SK+QIR LSR  + 
Sbjct: 145 AQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLSRRAKS 204
Query: 329 PSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAA 388
            S    + E    FNL  + P +SNNFG+ FE        L DLDI +S  +I++GA+  
Sbjct: 205 SSRKTISSEDE-PFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLL 263
Query: 389 PFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDS 448
           P +NS++  + V+  GD  IE+      +            +EE      +  + +  D 
Sbjct: 264 PHFNSKAIVILVINEGDANIELVGIKEQQQ--------KQKQEEEPLEVQRYRAELSEDD 315
Query: 449 AYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKELAFNTR 507
            +++PA +P V  A+  +NL  + F INAE N R  LAG ++ + + +E + +ELAF   
Sbjct: 316 VFVIPAAYPFVVNAT--SNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGS 373
Query: 508 ADEVERVFGNQDQDWFFKG-PSRWHQQQQGR 537
           A +VER+   Q + +F    P +  +  +GR
Sbjct: 374 AQDVERLLKKQRESYFVDAQPQQKEEGSKGR 404

>pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-Conglycinin Beta Homotrimers Complexes With N-Acetyl-D-Glucosamine Length = 416

Iteration: 1
 Score =  216 bits (551), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/391 (32%), Positives = 214/391 (54%), Gaps = 19/391 (4%)
Query: 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITV 214
           +Q+GR+  L +F +RS  L  L  YR+    + P T + P H DAD + FV  G+  +T+
Sbjct: 25  NQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTL 84
Query: 215 IRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGE 274
           +  ++R+SYN+  GD  R+P+G T+Y+ N  D + L I+K    +N PG+Y+ F+ +  +
Sbjct: 85  VNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKIIKLAIPVNKPGRYDDFFLSSTQ 144
Query: 275 NPESFLRAFSWEILESAFKTKRDSLERVLF------QQDQGAMVKASKQQIRALSRSQEG 328
             +S+L+ FS  ILE++F ++ + + RVL       +Q +G +V+ SK+QIR LSR  + 
Sbjct: 145 AQQSYLQGFSHNILETSFHSEFEEINRVLLGEEEEQRQQEGVIVELSKEQIRQLSRRAKS 204
Query: 329 PSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAA 388
            S    + E    FNL  + P +SNNFG+ FE        L DLDI +S  +I++GA+  
Sbjct: 205 SSRKTISSEDE-PFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLL 263
Query: 389 PFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDS 448
           P +NS++  + V+  GD  IE+      +            +EE      +  + +  D 
Sbjct: 264 PHFNSKAIVILVINEGDANIELVGIKEQQQ--------KQKQEEEPLEVQRYRAELSEDD 315
Query: 449 AYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKELAFNTR 507
            +++PA +P V  A+  +NL  + F INAE N R  LAG ++ + + +E + +ELAF   
Sbjct: 316 VFVIPAAYPFVVNAT--SNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGS 373
Query: 508 ADEVERVFGNQDQDWFFKG-PSRWHQQQQGR 537
           A +VER+   Q + +F    P +  +  +GR
Sbjct: 374 AQDVERLLKKQRESYFVDAQPQQKEEGSKGR 404

>pdb|3SMH|A Chain A, Crystal Structure Of Major Peanut Allergen Ara H 1 Length = 418

Iteration: 1
 Score =  215 bits (547), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 131/404 (32%), Positives = 212/404 (52%), Gaps = 34/404 (8%)
Query: 150 SSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQ 209
           S+R  +Q+GR+  L +F QRS+  + L+ +R+  + A P T V P H DAD +  +  GQ
Sbjct: 14  STRYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPKHADADNILVIQQGQ 73
Query: 210 GTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFY 269
            T+TV   NNR+S+N+  G  +R+PSG   Y+ N  D++ L + K    +N PGQ+E F+
Sbjct: 74  ATVTVANGNNRKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMPVNTPGQFEDFF 133
Query: 270 GAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQ---------------------DQ 308
            A   +  S+L+ FS   LE+AF  + + + RVL ++                     ++
Sbjct: 134 PASSRDQSSYLQGFSRNTLEAAFNAEFNEIRRVLLEENAGGEQEERGQRRWSTRSSENNE 193
Query: 309 GAMVKASKQQIRALSRSQEGPSIWPFAGESRGT----FNLFGKRPSHSNNFGELFEADSN 364
           G +VK SK+ +  L++     S+     E  G      NL    P  SNNFG+LFE   +
Sbjct: 194 GVIVKVSKEHVEELTK--HAKSVSKKGSEEEGDITNPINLREGEPDLSNNFGKLFEVKPD 251
Query: 365 DFRP-LEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERR 423
              P L+DLD+ ++   I +GA+  P +NS++  + VV  G G +E+      +    RR
Sbjct: 252 KKNPQLQDLDMMLTXVEIKEGALVLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRR 311
Query: 424 HQGSSTREEGSATYHKV---SSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGN 480
            +     EE   +  +V   ++R++    +I+PA HPV   AS  + L ++ F INAE N
Sbjct: 312 EEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINAS--SELHLLGFGINAENN 369
Query: 481 IRFPLAG-RNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWF 523
            R  LAG ++ +   +E +AK+LAF    ++VE++  NQ +  F
Sbjct: 370 HRIFLAGDKDNVIDQIEKQAKDLAFPGSGEQVEKLIKNQKESHF 413

>pdb|3S7E|A Chain A, Crystal Structure Of Ara H 1 Length = 418

Iteration: 1
 Score =  214 bits (546), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 131/404 (32%), Positives = 212/404 (52%), Gaps = 34/404 (8%)
Query: 150 SSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQ 209
           S+R  +Q+GR+  L +F QRS+  + L+ +R+  + A P T V P H DAD +  +  GQ
Sbjct: 15  STRYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPKHADADNILVIQQGQ 74
Query: 210 GTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFY 269
            T+TV   NNR+S+N+  G  +R+PSG   Y+ N  D++ L + K    +N PGQ+E F+
Sbjct: 75  ATVTVANGNNRKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMPVNTPGQFEDFF 134
Query: 270 GAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQ---------------------DQ 308
            A   +  S+L+ FS   LE+AF  + + + RVL ++                     ++
Sbjct: 135 PASSRDQSSYLQGFSRNTLEAAFNAEFNEIRRVLLEENAGGEQEERGQRRWSTRSSENNE 194
Query: 309 GAMVKASKQQIRALSRSQEGPSIWPFAGESRGT----FNLFGKRPSHSNNFGELFEADSN 364
           G +VK SK+ +  L++     S+     E  G      NL    P  SNNFG+LFE   +
Sbjct: 195 GVIVKVSKEHVEELTK--HAKSVSKKGSEEEGDITNPINLREGEPDLSNNFGKLFEVKPD 252
Query: 365 DFRP-LEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERR 423
              P L+DLD+ ++   I +GA+  P +NS++  + VV  G G +E+      +    RR
Sbjct: 253 KKNPQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRR 312
Query: 424 HQGSSTREEGSATYHKV---SSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGN 480
            +     EE   +  +V   ++R++    +I+PA HPV   AS  + L ++ F INAE N
Sbjct: 313 EEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINAS--SELHLLGFGINAENN 370
Query: 481 IRFPLAG-RNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWF 523
            R  LAG ++ +   +E +AK+LAF    ++VE++  NQ +  F
Sbjct: 371 HRIFLAGDKDNVIDQIEKQAKDLAFPGSGEQVEKLIKNQKESHF 414

>pdb|1UIJ|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Beta Homotrimer (I122mK124W) Length = 416

Iteration: 1
 Score =  213 bits (542), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 128/391 (32%), Positives = 214/391 (54%), Gaps = 19/391 (4%)
Query: 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITV 214
           +Q+GR+  L +F +RS  L  L  YR+    + P T + P H DAD + FV  G+  +T+
Sbjct: 25  NQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTL 84
Query: 215 IRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGE 274
           +  ++R+SYN+  GD  R+P+G T+Y+ N  D + L ++     +N PG+Y+ F+ +  +
Sbjct: 85  VNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQ 144
Query: 275 NPESFLRAFSWEILESAFKTKRDSLERVLF------QQDQGAMVKASKQQIRALSRSQEG 328
             +S+L+ FS  ILE++F ++ + + RVLF      +Q +G +V+ SK+QIR LSR  + 
Sbjct: 145 AQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLSRRAKS 204
Query: 329 PSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAA 388
            S    + E    FNL  + P +SNNFG+ FE        L DLDI +S  +I++GA+  
Sbjct: 205 SSRKTISSEDE-PFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLL 263
Query: 389 PFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDS 448
           P +NS++  + V+  GD  IE+      +            +EE      +  + +  D 
Sbjct: 264 PHFNSKAIVILVINEGDANIELVGIKEQQQ--------KQKQEEEPLEVQRYRAELSEDD 315
Query: 449 AYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKELAFNTR 507
            +++PA +P V  A+  +NL  + F INAE N R  LAG ++ + + +E + +ELAF   
Sbjct: 316 VFVIPAAYPFVVNAT--SNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGS 373
Query: 508 ADEVERVFGNQDQDWFFKG-PSRWHQQQQGR 537
           A +VER+   Q + +F    P +  +  +GR
Sbjct: 374 AQDVERLLKKQRESYFVDAQPQQKEEGSKGR 404

>pdb|1UIK|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime Homotrimer Length = 418

Iteration: 1
 Score =  213 bits (541), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 124/396 (31%), Positives = 218/396 (55%), Gaps = 24/396 (6%)
Query: 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITV 214
           +Q+G V  L +F +RS+ L+ L  YR+    + P T + P H DAD +  +  G   +T+
Sbjct: 22  NQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHHADADYLIVILNGTAILTL 81
Query: 215 IRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGE 274
           +  ++R+SYN++ GD +RVP+G T+YV N D+DE L ++     +N PG++E+F+ +  +
Sbjct: 82  VNNDDRDSYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPVNKPGRFESFFLSSTQ 141
Query: 275 NPESFLRAFSWEILESAFKTKRDSLERVLFQQDQG-----------AMVKASKQQIRALS 323
             +S+L+ FS  ILE+++ TK + + +VLF +++G            +V+ SK+QIR LS
Sbjct: 142 AQQSYLQGFSKNILEASYDTKFEEINKVLFGREEGQQQGEERLQESVIVEISKKQIRELS 201
Query: 324 RSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISK 383
           +  +  S    + E +  FNL  + P +SN  G+LFE        L DLD+ +S  ++++
Sbjct: 202 KHAKSSSRKTISSEDK-PFNLRSRDPIYSNKLGKLFEITPEKNPQLRDLDVFLSVVDMNE 260
Query: 384 GAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSR 443
           GA+  P +NS++  V V+  G+  IE+      +   ++  Q    R        K  + 
Sbjct: 261 GALFLPHFNSKAIVVLVINEGEANIELVGIKEQQQRQQQEEQPLEVR--------KYRAE 312
Query: 444 IRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKEL 502
           +     +++PAG+PVV  A+  ++L    F INAE N R  LAG ++ +   + S+ +EL
Sbjct: 313 LSEQDIFVIPAGYPVVVNAT--SDLNFFAFGINAENNQRNFLAGSKDNVISQIPSQVQEL 370
Query: 503 AFNTRADEVERVFGNQDQDWFFKG-PSRWHQQQQGR 537
           AF   A ++E +  +Q + +F    P +  +  +GR
Sbjct: 371 AFPGSAKDIENLIKSQSESYFVDAQPQQKEEGNKGR 406

>pdb|2EAA|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-3 Length = 433

Iteration: 1
 Score =  197 bits (500), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 114/395 (28%), Positives = 206/395 (52%), Gaps = 24/395 (6%)
Query: 154 TSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTIT 213
           T+Q+G +  L +F QRSK ++ LE YR+    + P T + P H DAD +  V  G+  +T
Sbjct: 35  TNQYGHLRILHRFDQRSKQIQNLENYRVVEFKSKPNTLLLPHHADADFLLVVLNGRAILT 94
Query: 214 VIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGG 273
           ++  ++R+SY +++G   ++P+G TF++ N DD+E L I+K    +N P +++ F+ +  
Sbjct: 95  LVNPDSRDSYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIPVNNPHRFQDFFLSST 154
Query: 274 ENPESFLRAFSWEILESAFKTKRDSLERVLF-----------QQDQGAMVKASKQQIRAL 322
           E  +S+LR FS  ILE++F +    + RVLF            +++G +V+  ++QI+ L
Sbjct: 155 EAQQSYLRGFSKNILEASFDSDFKEINRVLFGEERQQQQGEESREEGVIVELKREQIQEL 214
Query: 323 SRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANIS 382
            +  +  S    + +    FNL   +P +SN FG  +E        L+DLD+ +S  ++ 
Sbjct: 215 MKHAKSSSRKELSSQDE-PFNLRNSKPIYSNKFGRWYEMTPEKNPQLKDLDVFISSVDMK 273
Query: 383 KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSS 442
           +GA+  P YNS++  + V+  G+  IE+              Q    ++E S    +  +
Sbjct: 274 EGALLLPHYNSKAIVIMVINEGEAKIELVG---------LSDQQQQKQQEESLEVQRYRA 324
Query: 443 RIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIR-FPLAGRNKIFKVMESEAKE 501
            +  D  +++PA +PV   A+  +NL    F INAE N R F   G++ +   + +E  E
Sbjct: 325 ELSEDDVFVIPAAYPVAINAT--SNLNFFAFGINAENNQRNFLAGGKDNVMSEIPTEVLE 382
Query: 502 LAFNTRADEVERVFGNQDQDWFFKGPSRWHQQQQG 536
           ++F     +VE++   Q +  F        Q+++G
Sbjct: 383 VSFPASGKKVEKLIKKQSESHFVDAQPEQQQREEG 417

>pdb|2EA7|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-1 Length = 434

Iteration: 1
 Score =  189 bits (480), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 201/391 (51%), Gaps = 24/391 (6%)
Query: 158 GRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRE 217
           G +  L +F QRSK ++ LE YR+    + P T + P H DAD +  V  G   +T++  
Sbjct: 40  GHIRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNP 99
Query: 218 NNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPE 277
           ++R+SY +++G   ++P+G TF++ N DD+E L I+K    +N P +++ F+ +  E  +
Sbjct: 100 DSRDSYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIPVNNPHRFQDFFLSSTEAQQ 159
Query: 278 SFLRAFSWEILESAFKTKRDSLERVLF-----------QQDQGAMVKASKQQIRALSRSQ 326
           S+LR FS  ILE++F +    + RVLF            +++G +V+  ++QI+ L +  
Sbjct: 160 SYLRGFSKNILEASFDSDFKEINRVLFGEERQQQQGEESREEGVIVELKREQIQELMKHA 219
Query: 327 EGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAM 386
           +  S    + +    FNL   +P +SN FG  +E        L+DLD+ +S  ++ +GA+
Sbjct: 220 KSSSRKELSSQDE-PFNLRNSKPIYSNKFGRWYEMTPEKNPQLKDLDVFISSVDMKEGAL 278
Query: 387 AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRT 446
             P Y+S++  + V+  G+  IE+              Q    ++E S    +  + +  
Sbjct: 279 LLPHYSSKAIVIMVINEGEAKIELVG---------LSDQQQQKQQEESLEVQRYRAELSE 329
Query: 447 DSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIR-FPLAGRNKIFKVMESEAKELAFN 505
           D  +++PA +PV   A+  +NL    F INAE N R F   G++ +   + +E  E++F 
Sbjct: 330 DDVFVIPAAYPVAINAT--SNLNFFAFGINAENNRRNFLAGGKDNVMSEIPTEVLEVSFP 387
Query: 506 TRADEVERVFGNQDQDWFFKGPSRWHQQQQG 536
               +VE++   Q +  F        Q+++G
Sbjct: 388 ASGKKVEKLIKKQSESHFVDAQPEQQQREEG 418

>pdb|2CAU|A Chain A, Canavalin From Jack Bean Length = 445

Iteration: 1
 Score =  184 bits (468), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 198/386 (51%), Gaps = 17/386 (4%)
Query: 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITV 214
           +QHG +  L +F + ++ L  L  YR+    + P T + P H D+D +  V  GQ  + +
Sbjct: 62  NQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVL 121
Query: 215 IRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGE 274
           +  + R++Y + +GD I++ +G  FY+ N D+++ L I+KF  +   PG  E F+ +  +
Sbjct: 122 VNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTK 181
Query: 275 NPESFLRAFSWEILESAFKTKRDSLERVLFQQDQ-GAMVKASKQQIRALSRSQEGPSIWP 333
              S+L AFS   LE+++ +  D +E+ L Q++Q G +VK  K QI+ +S+  +  S   
Sbjct: 182 RLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMPKDQIQEISKHAQSSSRKT 241
Query: 334 FAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNS 393
            + + +  FNL  + P +SNN+G+L+E        L DLDI ++   +++GA+  P YNS
Sbjct: 242 LSSQDK-PFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNS 300
Query: 394 RSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP 453
           R+T + V   G   +E+              +    +   S    + ++ +      ++P
Sbjct: 301 RATVILVANEGRAEVELVG-----------LEQQQQQGLESMQLRRYAATLSEGDIIVIP 349
Query: 454 AGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKELAFNTRADEVE 512
           +  PV   A+  ++L +V   +NAE N R  LAG +  + + +  +  +L F    +EVE
Sbjct: 350 SSFPVALKAA--SDLNMVGIGVNAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVE 407
Query: 513 RVFGNQDQDWFFKGPSRWHQQQQGRA 538
            +  NQ + +F  G  R H    G+A
Sbjct: 408 ELLENQKESYFVDGQPR-HIDAGGKA 432

>pdb|2CV6|A Chain A, Crystal Structure Of 8salpha Globulin, The Major Seed Storage Protein Of Mungbean Length = 424

Iteration: 1
 Score =  168 bits (426), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 202/396 (51%), Gaps = 24/396 (6%)
Query: 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITV 214
           +Q G +  L +F QRSK ++ LE YR+    + P T + P H DAD +  V  G+  +T+
Sbjct: 31  NQFGHLRVLQRFDQRSKQMQNLENYRVVEFNSKPNTLLLPHHADADFLLVVLNGRAVLTL 90
Query: 215 IRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGE 274
           +  + R+S  +++G   ++P+G TF++ N DD+E L I+K    +N P +++ F+ +  E
Sbjct: 91  VNPDGRDSNILEQGHAQKIPAGTTFFLVNPDDEENLRIIKLAVPVNNPHRFQDFFLSSTE 150
Query: 275 NPESFLRAFSWEILESAFKTKRDSLERVLF------------QQDQGAMVKASKQQIRAL 322
             +S+L+ FS  ILE++F +    + RVLF             Q +G +V+  ++QIR L
Sbjct: 151 AQQSYLQGFSKNILEASFDSDIKEISRVLFGEEGQQQQQGQESQQEGVIVELKREQIREL 210
Query: 323 SRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANIS 382
           ++  +  S    + E +  FNL  ++P +SN  G  FE        L DLD+ +   ++ 
Sbjct: 211 TKHAKSSSKKSLSSEDQ-PFNLRNQKPIYSNKLGRWFEITPEKNPQLRDLDMFIRSVDMK 269
Query: 383 KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSS 442
           +G++  P YNS++  + V+  G   IE+          +R  Q     +E S    +  +
Sbjct: 270 EGSLLLPHYNSKAIVILVINEGKANIELV--------GQREQQKQQEEQEESWEVQRYRA 321
Query: 443 RIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKE 501
            +  D  +I+PA +PV   A+  +NL    F INAE N R  LAG ++ +   + +E  +
Sbjct: 322 ELSEDDVFIIPATYPVAINAT--SNLNFFAFGINAENNQRNFLAGEKDNVISEIPTEVLD 379
Query: 502 LAFNTRADEVERVFGNQDQDWFFKGPSRWHQQQQGR 537
           + F    ++V+++   Q +  F        ++++ R
Sbjct: 380 VTFPASGEKVQKLIKKQSESQFVDAQPEQQEREEAR 415

>pdb|2PHL|A Chain A, The Structure Of Phaseolin At 2.2 Angstroms Resolution: Implications For A Common Vicilin(Slash)legumin Structure And The Genetic Engineering Of Seed Storage Proteins Length = 397

Iteration: 1
 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 188/398 (47%), Gaps = 49/398 (12%)
Query: 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITV 214
           +Q+G +  L +F Q+SK L+ LE YRL    + P+T + P   DA+ +  V  G   + +
Sbjct: 28  NQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVL 87
Query: 215 IRENNRESY------NVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAF 268
           ++ ++R  Y      N    D  ++P+G  FY+ N D  E L I++    +N P Q   F
Sbjct: 88  VKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNP-QIHEF 146
Query: 269 YGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQ---QDQGAMVKASKQQIRALSRS 325
           + +  E  +S+L+ FS  ILE++F +K + + RVLF+   Q +G +V    +QI+ LS+ 
Sbjct: 147 FLSSTEAQQSYLQEFSKHILEASFNSKFEEINRVLFEEEGQQEGVIVNIDSEQIKELSKH 206
Query: 326 QEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGA 385
            +  S    + +     N  G      N FG L E   N       L++ +S   + +GA
Sbjct: 207 AKSSSRKSLSKQD----NTIG------NEFGNLTERTDN------SLNVLISSIEMEEGA 250
Query: 386 MAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIR 445
           +  P Y S++  + VV  G+ ++E+  P  ++ + E               Y    + + 
Sbjct: 251 LFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLE---------------YESYRAELS 295
Query: 446 TDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGR-----NKIFKVMES-EA 499
            D  +++PA +PV   A+ N N     F INA  N R  LAG+     + I + ++  + 
Sbjct: 296 KDDVFVIPAAYPVAIKATSNVNF--TGFGINANNNNRNLLAGKTDNVISSIGRALDGKDV 353
Query: 500 KELAFNTRADEVERVFGNQDQDWFFKGPSRWHQQQQGR 537
             L F+   DEV ++   Q   +F        +QQ+GR
Sbjct: 354 LGLTFSGSGDEVMKLINKQSGSYFVDAHHHQQEQQKGR 391

>pdb|1CAU|A Chain A, Determination Of Three Crystal Structures Of Canavalin By Molecular Replacement Length = 181

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 93/163 (57%), Gaps = 1/163 (0%)
Query: 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITV 214
           +QHG +  L +F + ++ L  L  YR+    + P T + P H D+D +  V  GQ  + +
Sbjct: 19  NQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVL 78
Query: 215 IRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGE 274
           +  + R++Y + +GD I++ +G  FY+ N D+++ L I+KF  +   PG  E F+ +  +
Sbjct: 79  VNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTK 138
Query: 275 NPESFLRAFSWEILESAFKTKRDSLERVLFQQDQ-GAMVKASK 316
              S+L AFS   LE+++ +  D +E+ L Q++Q G +VK  K
Sbjct: 139 RLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMPK 181

>pdb|1DGR|A Chain A, Refined Crystal Structure Of Canavalin From Jack Bean Length = 178

Iteration: 1
 Score =  105 bits (263), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 92/160 (57%), Gaps = 1/160 (0%)
Query: 155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITV 214
           +QHG +  L +F + ++ L  L  YR+    + P T + P H D+D +  V  GQ  + +
Sbjct: 17  NQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVL 76
Query: 215 IRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGE 274
           +  + R++Y + +GD I++ +G  FY+ N D+++ L I+KF  +   PG  E F+ +  +
Sbjct: 77  VNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTK 136
Query: 275 NPESFLRAFSWEILESAFKTKRDSLERVLFQQDQ-GAMVK 313
              S+L AFS   LE+++ +  D +E+ L Q++Q G +VK
Sbjct: 137 RLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVK 176

>pdb|1CAU|B Chain B, Determination Of Three Crystal Structures Of Canavalin By Molecular Replacement Length = 184

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 14/189 (7%)
Query: 342 FNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVV 401
           FNL  + P +SNN+G+L+E        L DLDI ++   +++GA+  P YNSR+T + V 
Sbjct: 9   FNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVA 68
Query: 402 VAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTV 461
             G   +E+      +       Q             + ++ +      ++P+  PV   
Sbjct: 69  NEGRAEVELVGLEQQQQQGLESMQ-----------LRRYAATLSEGDIIVIPSSFPVALK 117
Query: 462 ASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKELAFNTRADEVERVFGNQDQ 520
           A+  ++L +V   +NAE N R  LAG +  + + +  +  +L F    +EVE +  NQ +
Sbjct: 118 AA--SDLNMVGIGVNAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEELLENQKE 175
Query: 521 DWFFKGPSR 529
            +F  G  R
Sbjct: 176 SYFVDGQPR 184

>pdb|1DGR|X Chain X, Refined Crystal Structure Of Canavalin From Jack Bean Length = 79

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 342 FNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVV 401
           FNL  + P +SNN+G+L+E        L DLDI ++   +++GA+  P YNSR+T + V 
Sbjct: 4   FNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVA 63
Query: 402 VAGDGYIEI 410
             G   +E+
Sbjct: 64  NEGRAEVEL 72

>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer Length = 476

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 23/162 (14%)
Query: 356 GELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHV 415
           G +  A S DF  L  L ++  + ++ K AM  P YN  +  +   + G   I++     
Sbjct: 320 GSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVV---- 375
Query: 416 SRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEI 475
              + ER   G                 ++     IVP    VV   SQ++N E V F+ 
Sbjct: 376 -NCNGERVFDG----------------ELQEGRVLIVPQNF-VVAARSQSDNFEYVSFKT 417
Query: 476 NAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGN 517
           N    I   LAG N +   +  E  +  FN ++ +  ++  N
Sbjct: 418 NDTPMIGT-LAGANSLLNALPEEVIQHTFNLKSQQARQIKNN 458

>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s Length = 476

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 23/162 (14%)
Query: 356 GELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHV 415
           G +  A S DF  L  L ++  + ++ K AM  P YN  +  +   + G   I++     
Sbjct: 320 GSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVV---- 375
Query: 416 SRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEI 475
              + ER   G                 ++     IVP    VV   SQ++N E V F+ 
Sbjct: 376 -NCNGERVFDG----------------ELQEGRVLIVPQNF-VVAARSQSDNFEYVSFKT 417
Query: 476 NAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGN 517
           N    I   LAG N +   +  E  +  FN ++ +  ++  N
Sbjct: 418 NDTPMIGT-LAGANSLLNALPEEVIQHTFNLKSQQARQIKNN 458

>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant Length = 476

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 23/162 (14%)
Query: 356 GELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHV 415
           G +  A S DF  L  L ++  + ++ K AM  P YN  +  +   + G   I++     
Sbjct: 320 GSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVV---- 375
Query: 416 SRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEI 475
              + ER   G                 ++     IVP    VV   SQ++N E V F+ 
Sbjct: 376 -NCNGERVFDG----------------ELQEGRVLIVPQNF-VVAARSQSDNFEYVSFKT 417
Query: 476 NAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGN 517
           N    I   LAG N +   +  E  +  FN ++ +  ++  N
Sbjct: 418 NDTPMIGT-LAGANSLLNALPEEVIQHTFNLKSQQARQIKNN 458

>pdb|3KGL|A Chain A, Crystal Structure Of Procruciferin, 11s Globulin From Brassica Napus Length = 466

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 129/328 (39%), Gaps = 56/328 (17%)
Query: 216 RENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYE----AFYGA 271
           R+ +++  +++ GD I    G   +  N D ++ L IV  +   +   Q +     FY A
Sbjct: 140 RDMHQKVEHIRTGDTIATHPGVAQWFYN-DGNQPLVIVSVLDLASHQNQLDRNPRPFYLA 198
Query: 272 GGENPE--------------SFLRAFSWEILESAFKTKRDSLERVLFQQD-QGAMVKASK 316
           G  NP+              + L  F+ E+L  AFK    + +++  QQD +G +++   
Sbjct: 199 G-NNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQG 257
Query: 317 --QQIRALSRSQ----EGPSIWPFAGESRGTFNLFGKRPSHSN----NFGELFEADSNDF 366
               IR   RSQ    E   +      +R T NL    PS+++      G +   +S D 
Sbjct: 258 PFSVIRPPLRSQRPQEEVNGLEETICSARCTDNL--DDPSNADVYKPQLGYISTLNSYDL 315
Query: 367 RPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQG 426
             L  L ++    +I + AM  P +N+ +  V  V  G+ ++++   +  R    +  QG
Sbjct: 316 PILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQG 375
Query: 427 SSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLA 486
                                    +P G  VV  A+ +     + F+ NA   I   LA
Sbjct: 376 ---------------------QLLSIPQGFSVVKRAT-SEQFRWIEFKTNANAQIN-TLA 412
Query: 487 GRNKIFKVMESEAKELAFNTRADEVERV 514
           GR  + + +  E     +    +E  RV
Sbjct: 413 GRTSVLRGLPLEVISNGYQISLEEARRV 440

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	540
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	5e-93
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	5e-91
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	4e-08
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	1e-87
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	2e-07
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	1e-86
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	5e-08
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	9e-79
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	6e-51
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	5e-05
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	2e-49
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	3e-47
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	1e-46
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	9e-40
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	2e-35
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	2e-34
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	4e-06
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	4e-27
1dgw_Y	93	Canavalin; duplicated swiss-roll beta barrels, loo	4e-25
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	4e-24
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	1e-08
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	9e-18
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	3e-16
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	5e-08
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	1e-07
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	5e-15
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	7e-07
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	1e-05
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	2e-05
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	8e-05
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	1e-04
1v70_A	105	Probable antibiotics synthesis protein; structural	2e-04
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	2e-04
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	2e-04
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	5e-04
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	7e-04
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	7e-04

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Length = 418

 Score =  289 bits (740), Expect = 5e-93
 Identities = 128/408 (31%), Positives = 209/408 (51%), Gaps = 30/408 (7%)

Query: 147 DEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVS 206
              S+R  +Q+GR+  L +F QRS+  + L+ +R+  + A P T V P H DAD +  + 
Sbjct: 12  RRFSTRYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPKHADADNILVIQ 71

Query: 207 WGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYE 266
            GQ T+TV   NNR+S+N+  G  +R+PSG   Y+ N  D++ L + K    +N PGQ+E
Sbjct: 72  QGQATVTVANGNNRKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMPVNTPGQFE 131

Query: 267 AFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLF---------------------Q 305
            F+ A   +  S+L+ FS   LE+AF  + + + RVL                      +
Sbjct: 132 DFFPASSRDQSSYLQGFSRNTLEAAFNAEFNEIRRVLLEENAGGEQEERGQRRWSTRSSE 191

Query: 306 QDQGAMVKASKQQIRALSRSQEGPSIW--PFAGESRGTFNLFGKRPSHSNNFGELFEADS 363
            ++G +VK SK+ +  L++  +  S       G+     NL    P  SNNFG+LFE   
Sbjct: 192 NNEGVIVKVSKEHVEELTKHAKSVSKKGSEEEGDITNPINLREGEPDLSNNFGKLFEVKP 251

Query: 364 NDFRP-LEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSER 422
           +   P L+DLD+ ++   I +GA+  P +NS++  + VV  G G +E+      +    R
Sbjct: 252 DKKNPQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGR 311

Query: 423 RHQGSST---REEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEG 479
           R +        E  +    + ++R++    +I+PA HPV   AS  + L ++ F INAE 
Sbjct: 312 REEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINAS--SELHLLGFGINAEN 369

Query: 480 NIRFPLAG-RNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKG 526
           N R  LAG ++ +   +E +AK+LAF    ++VE++  NQ +  F   
Sbjct: 370 NHRIFLAGDKDNVIDQIEKQAKDLAFPGSGEQVEKLIKNQKESHFVSA 417

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Length = 416

 Score =  284 bits (727), Expect = 5e-91
 Identities = 125/401 (31%), Positives = 214/401 (53%), Gaps = 20/401 (4%)

Query: 144 EEGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVF 203
              +   +   +Q+GR+  L +F +RS  L  L  YR+    + P T + P H DAD + 
Sbjct: 14  RSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLL 73

Query: 204 FVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPG 263
           FV  G+  +T++  ++R+SYN+  GD  R+P+G T+Y+ N  D + L ++     +N PG
Sbjct: 74  FVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPG 133

Query: 264 QYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVL------FQQDQGAMVKASKQ 317
           +Y+ F+ +  +  +S+L+ FS  ILE++F ++ + + RVL       +Q +G +V+ SK+
Sbjct: 134 RYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKE 193

Query: 318 QIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVS 377
           QIR LSR  +  S           FNL  + P +SNNFG+ FE        L DLDI +S
Sbjct: 194 QIRQLSRRAKSSSRKTI-SSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLS 252

Query: 378 YANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY 437
             +I++GA+  P +NS++  + V+  GD  IE+      +   +        +EE     
Sbjct: 253 SVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQK--------QEEEPLEV 304

Query: 438 HKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVME 496
            +  + +  D  +++PA +P V  A+  +NL  + F INAE N R  LAG ++ + + +E
Sbjct: 305 QRYRAELSEDDVFVIPAAYPFVVNAT--SNLNFLAFGINAENNQRNFLAGEKDNVVRQIE 362

Query: 497 SEAKELAFNTRADEVERVFGNQDQDWFFKGPSRWHQQQQGR 537
            + +ELAF   A +VER+   Q + +F     +  Q+++G 
Sbjct: 363 RQVQELAFPGSAQDVERLLKKQRESYFVDAQPQ--QKEEGS 401

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Length = 416

 Score = 54.5 bits (130), Expect = 4e-08
 Identities = 38/256 (14%), Positives = 83/256 (32%), Gaps = 34/256 (13%)

Query: 92  AEKHLRQCQRECDRQEEGGQQRALCRFRCQEKYRREKEGEGGQHNTQEEEEEEEGDEESS 151
               +   + E  RQ+EG         + Q +    +     +     E+E       + 
Sbjct: 168 EINRVLFGEEEEQRQQEGVIVE---LSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNP 224

Query: 152 RVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIAN--PQTFVTP-THLDADAVFFVSWG 208
             ++  G+      F    +    L    + +   +      + P  +  A  +  ++ G
Sbjct: 225 IYSNNFGKF-----FEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEG 279

Query: 209 QGTITVIRENNRE---------------SYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIV 253
              I ++    ++                  +   D+  +P+   F V        L  +
Sbjct: 280 DANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNA---TSNLNFL 336

Query: 254 KFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVK 313
            F  +          + AG ++  + +R    ++ E AF      +ER+L +Q +   V 
Sbjct: 337 AFGINAENNQ---RNFLAGEKD--NVVRQIERQVQELAFPGSAQDVERLLKKQRESYFVD 391

Query: 314 ASKQQIRALSRSQEGP 329
           A  QQ    S+ ++GP
Sbjct: 392 AQPQQKEEGSKGRKGP 407

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Length = 434

 Score =  276 bits (706), Expect = 1e-87
 Identities = 113/429 (26%), Positives = 207/429 (48%), Gaps = 27/429 (6%)

Query: 124 YRREKEGEGGQHNTQEEEEE---EEGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYR 180
           +R   E       +  +             +   ++ G +  L +F QRSK ++ LE YR
Sbjct: 3   HREHHESREEVSVSSGKNNPFYFNSDRWFRTLYRNEWGHIRVLQRFDQRSKQMQNLENYR 62

Query: 181 LGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFY 240
           +    + P T + P H DAD +  V  G   +T++  ++R+SY +++G   ++P+G TF+
Sbjct: 63  VVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQKIPAGTTFF 122

Query: 241 VTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLE 300
           + N DD+E L I+K    +N P +++ F+ +  E  +S+LR FS  ILE++F +    + 
Sbjct: 123 LVNPDDNENLRIIKLAIPVNNPHRFQDFFLSSTEAQQSYLRGFSKNILEASFDSDFKEIN 182

Query: 301 RVLFQQD-----------QGAMVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRP 349
           RVLF ++           +G +V+  ++QI+ L +  +  S           FNL   +P
Sbjct: 183 RVLFGEERQQQQGEESREEGVIVELKREQIQELMKHAKSSSRKEL-SSQDEPFNLRNSKP 241

Query: 350 SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIE 409
            +SN FG  +E        L+DLD+ +S  ++ +GA+  P Y+S++  + V+  G+  IE
Sbjct: 242 IYSNKFGRWYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIE 301

Query: 410 IACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLE 469
           +              Q    ++E S    +  + +  D  +++PA +PV   A+  +NL 
Sbjct: 302 LVGLS---------DQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINAT--SNLN 350

Query: 470 VVCFEINAEGNIR-FPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPS 528
              F INAE N R F   G++ +   + +E  E++F     +VE++   Q +  F     
Sbjct: 351 FFAFGINAENNRRNFLAGGKDNVMSEIPTEVLEVSFPASGKKVEKLIKKQSESHFVDAQP 410

Query: 529 RWHQQQQGR 537
              Q+++G 
Sbjct: 411 EQQQREEGH 419

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Length = 434

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 33/265 (12%), Positives = 91/265 (34%), Gaps = 33/265 (12%)

Query: 85  WMNPGEPAEKHLRQCQRECDRQEEGGQQRALCR-FRCQEKYRREKEGEGGQHNTQEEEEE 143
           + +  +   + L   +R+  + EE  ++  +    R Q +   +      +     ++E 
Sbjct: 174 FDSDFKEINRVLFGEERQQQQGEESREEGVIVELKREQIQELMKHAKSSSRKELSSQDEP 233

Query: 144 EEGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIAN--PQTFVTP-THLDAD 200
                     +++ GR      +    +    L+   + I   +      + P     A 
Sbjct: 234 FNLRNSKPIYSNKFGRW-----YEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYSSKAI 288

Query: 201 AVFFVSWGQGTITVIRENNRE--------------SYNVKRGDIIRVPSGNTFYVTNTDD 246
            +  ++ G+  I ++  ++++                 +   D+  +P+     +  T +
Sbjct: 289 VIMVINEGEAKIELVGLSDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINATSN 348

Query: 247 DEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQ 306
                   F  +          + AGG++  + +     E+LE +F      +E+++ +Q
Sbjct: 349 LN---FFAFGINAENNR---RNFLAGGKD--NVMSEIPTEVLEVSFPASGKKVEKLIKKQ 400

Query: 307 DQGAMVKA--SKQQIRALSRSQEGP 329
            +   V A   +QQ     + ++G 
Sbjct: 401 SESHFVDAQPEQQQREEGHKGRKGS 425

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Length = 445

 Score =  273 bits (699), Expect = 1e-86
 Identities = 113/430 (26%), Positives = 204/430 (47%), Gaps = 21/430 (4%)

Query: 115 LCRFRCQEKYRREKEGEGGQHNTQEEEEE----EEGDEESSRVTSQHGRVAFLPKFTQRS 170
           L        +     GE    + +   +        ++  +   +QHG +  L +F + +
Sbjct: 18  LASVSASFAHSGHSGGEAEDESEESRAQNNPYLFRSNKFLTLFKNQHGSLRLLQRFNEDT 77

Query: 171 KLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDI 230
           + L  L  YR+    + P T + P H D+D +  V  GQ  + ++  + R++Y + +GD 
Sbjct: 78  EKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDA 137

Query: 231 IRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILES 290
           I++ +G  FY+ N D+++ L I+KF  +   PG  E F+ +  +   S+L AFS   LE+
Sbjct: 138 IKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEA 197

Query: 291 AFKTKRDSLERVLFQQDQ-GAMVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRP 349
           ++ +  D +E+ L Q++Q G +VK  K QI+ +S+  +  S           FNL  + P
Sbjct: 198 SYDSPYDEIEQTLLQEEQEGVIVKMPKDQIQEISKHAQSSSRKTL-SSQDKPFNLRSRDP 256

Query: 350 SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIE 409
            +SNN+G+L+E        L DLDI ++   +++GA+  P YNSR+T + V   G   +E
Sbjct: 257 IYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVE 316

Query: 410 IACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLE 469
           +                   +   S    + ++ +      ++P+  PV   A+  ++L 
Sbjct: 317 LVGLE-----------QQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAA--SDLN 363

Query: 470 VVCFEINAEGNIRFPLAG-RNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPS 528
           +V   +NAE N R  LAG +  + + +  +  +L F    +EVE +  NQ + +F  G  
Sbjct: 364 MVGIGVNAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEELLENQKESYFVDGQP 423

Query: 529 RWHQQQQGRA 538
           R H    G+A
Sbjct: 424 R-HIDAGGKA 432

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Length = 445

 Score = 54.5 bits (130), Expect = 5e-08
 Identities = 27/240 (11%), Positives = 78/240 (32%), Gaps = 30/240 (12%)

Query: 105 RQEEGGQQRALCRFRCQEKYRREKEGEGGQHNTQEEEEEEEGDEESSRVTSQHGRVAFLP 164
           ++E+ G    + + + QE  +  +     +     +++           ++ +G++    
Sbjct: 212 QEEQEGVIVKMPKDQIQEISKHAQSS--SRKTLSSQDKPFNLRSRDPIYSNNYGKL---- 265

Query: 165 KFTQRSKLLRGLEKYRLGILIAN--PQTFVTP-THLDADAVFFVSWGQGTITVIRENNRE 221
            +    +    L    + +            P  +  A  +   + G+  + ++    ++
Sbjct: 266 -YEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQQ 324

Query: 222 ------------SYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFY 269
                       +  +  GDII +PS     +    D     +V    +          +
Sbjct: 325 QQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAASDLN---MVGIGVNAENNE---RNF 378

Query: 270 GAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGP 329
            AG +   + +R    ++ +  F    + +E +L  Q +   V    + I A  +++   
Sbjct: 379 LAGHKE--NVIRQIPRQVSDLTFPGSGEEVEELLENQKESYFVDGQPRHIDAGGKARRAH 436

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* Length = 397

 Score =  252 bits (643), Expect = 9e-79
 Identities = 112/426 (26%), Positives = 197/426 (46%), Gaps = 58/426 (13%)

Query: 137 TQEEEEEEEGD---------EESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIAN 187
           T   EEEE  D           ++   +Q+G +  L +F Q+SK L+ LE YRL    + 
Sbjct: 1   TSLREEEESQDNPFYFNSDNSWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSK 60

Query: 188 PQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESY------NVKRGDIIRVPSGNTFYV 241
           P+T + P   DA+ +  V  G   + +++ ++R  Y      N    D  ++P+G  FY+
Sbjct: 61  PETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYL 120

Query: 242 TNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLER 301
            N D  E L I++    +N P  +E F+ +  E  +S+L+ FS  ILE++F +K + + R
Sbjct: 121 VNPDPKEDLRIIQLAMPVNNPQIHE-FFLSSTEAQQSYLQEFSKHILEASFNSKFEEINR 179

Query: 302 VLFQQD---QGAMVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGEL 358
           VLF+++   +G +V    +QI+ LS+  +  S            +L  +  +  N FG L
Sbjct: 180 VLFEEEGQQEGVIVNIDSEQIKELSKHAKSSS----------RKSLSKQDNTIGNEFGNL 229

Query: 359 FEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRS 418
            E   N       L++ +S   + +GA+  P Y S++  + VV  G+ ++E+  P     
Sbjct: 230 TERTDN------SLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPK---- 279

Query: 419 SSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAE 478
                        + +  Y    + +  D  +++PA +PV   A+  +N+    F INA 
Sbjct: 280 -----------GNKETLEYESYRAELSKDDVFVIPAAYPVAIKAT--SNVNFTGFGINAN 326

Query: 479 GNIRFPLAGR-----NKIFKVMES-EAKELAFNTRADEVERVFGNQDQDWFFKGPSRWHQ 532
            N R  LAG+     + I + ++  +   L F+   DEV ++   Q   +F        +
Sbjct: 327 NNNRNLLAGKTDNVISSIGRALDGKDVLGLTFSGSGDEVMKLINKQSGSYFVDAHHHQQE 386

Query: 533 QQQGRA 538
           QQ+GR 
Sbjct: 387 QQKGRK 392

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Length = 178

 Score =  171 bits (435), Expect = 6e-51
 Identities = 51/169 (30%), Positives = 95/169 (56%), Gaps = 1/169 (0%)

Query: 147 DEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVS 206
           ++  +   +QHG +  L +F + ++ L  L  YR+    + P T + P H D+D +  V 
Sbjct: 9   NKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVL 68

Query: 207 WGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYE 266
            GQ  + ++  + R++Y + +GD I++ +G  FY+ N D+++ L I+KF  +   PG  E
Sbjct: 69  EGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVE 128

Query: 267 AFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQ-GAMVKA 314
            F+ +  +   S+L AFS   LE+++ +  D +E+ L Q++Q G +VK 
Sbjct: 129 DFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKM 177

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Length = 178

 Score = 43.0 bits (101), Expect = 5e-05
 Identities = 31/188 (16%), Positives = 59/188 (31%), Gaps = 42/188 (22%)

Query: 351 HSNNFGELFEADSNDFRPLEDLD-----------ITVSYANISKGAMAAPFYNSRSTKVA 399
            SN F  LF+      R L+  +             V         +  P + S S  + 
Sbjct: 7   RSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHH-SDSDLLV 65

Query: 400 VVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPV- 458
           +V+ G   + +  P                         + + ++    A  + AG P  
Sbjct: 66  LVLEGQAILVLVNPD-----------------------GRDTYKLDQGDAIKIQAGTPFY 102

Query: 459 VTVASQNNNLEVVCFEI--NAEGNIR-FPLAG---RNKIFKVMESEAKELAFNTRADEVE 512
           +     N NL ++ F I     G +  F L+                 E ++++  DE+E
Sbjct: 103 LINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIE 162

Query: 513 RVFGNQDQ 520
           +    ++Q
Sbjct: 163 QTLLQEEQ 170

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Length = 459

 Score =  175 bits (445), Expect = 2e-49
 Identities = 65/483 (13%), Positives = 139/483 (28%), Gaps = 96/483 (19%)

Query: 121 QEKYRREKEGEGGQHNTQEEEEEEEGD-----EESSRVTSQHGRVAFLPKFTQRSKLLRG 175
           Q+     +  E  Q +  +       +     +   R  ++ G      +     +    
Sbjct: 4   QQSPWEFQGSEVWQQHRYQSPRACRLENLRAQDPVRRAEAEAGFTEVWDQDNDEFQCAG- 62

Query: 176 LEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVI-------------------- 215
                +      P+  + P   +A  + FV+ G G   +                     
Sbjct: 63  ---VNMIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGS 119

Query: 216 --RENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSIN---LPGQYEAFYG 270
             ++ +++    + GD++ VP+G + ++ N    + + IV          +      FY 
Sbjct: 120 AFKDQHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYL 179

Query: 271 AG---------------------GENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQ- 308
           AG                     GE   +    F+ E LE AF+     + ++  + D+ 
Sbjct: 180 AGRPEQVERGVEEWERSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDER 239

Query: 309 GAMVKASKQQIRALSRSQEGPSIWPFAGESRG-----------------TFNLFGKRPSH 351
             +V+  +     L    E         ES                         +    
Sbjct: 240 DRIVQVDEDFEVLLPEKDEEERSRGRYIESESESENGLEETICTLRLKQNIGRSERADVF 299

Query: 352 SNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIA 411
           +   G +  A+ +    L  + ++     +   AM AP Y   S  V     G+  +++ 
Sbjct: 300 NPRGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVV 359

Query: 412 CPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVV 471
                                           +R     ++P    V+  AS +   E +
Sbjct: 360 DNFGQSV---------------------FDGEVREGQVLMIPQNFVVIKRAS-DRGFEWI 397

Query: 472 CFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSRWH 531
            F+ N    I   LAGR    +++        +    +E +R+   Q +           
Sbjct: 398 AFKTNDN-AITNLLAGRVSQMRMLPLGVLSNMYRISREEAQRLKYGQQEMRVLSPGRSQG 456

Query: 532 QQQ 534
           +++
Sbjct: 457 RRE 459

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus} Length = 466

 Score =  170 bits (430), Expect = 3e-47
 Identities = 71/404 (17%), Positives = 128/404 (31%), Gaps = 53/404 (13%)

Query: 164 PKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTIT---VIRENNR 220
             F   S    G             Q                   QG  +     R+ ++
Sbjct: 85  ETFQDSSVFQPGGGSPFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQ 144

Query: 221 ESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSIN----LPGQYEAFYGAGG--- 273
           +  +++ GD I    G   +  N D ++ L IV  +   +    L      FY AG    
Sbjct: 145 KVEHIRTGDTIATHPGVAQWFYN-DGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQ 203

Query: 274 ----------ENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQ-GAMVKASK--QQIR 320
                     +  ++ L  F+ E+L  AFK    + +++  QQD  G +++       IR
Sbjct: 204 GQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQGPFSVIR 263

Query: 321 ALSRSQEGPSIWPFAGESRGT------FNLFGKRPSHSNNFGELFEADSNDFRPLEDLDI 374
              RSQ          E+  +       +       +    G +   +S D   L  L +
Sbjct: 264 PPLRSQRPQEEVNGLEETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRL 323

Query: 375 TVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGS 434
           +    +I + AM  P +N+ +  V  V  G+ ++++   +  R    +  QG        
Sbjct: 324 SALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQG-------- 375

Query: 435 ATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKV 494
                            +P G  VV  A+ +     + F+ N        LAGR  + + 
Sbjct: 376 -------------QLLSIPQGFSVVKRAT-SEQFRWIEFKTN-ANAQINTLAGRTSVLRG 420

Query: 495 MESEAKELAFNTRADEVERVFGNQDQDWFFKGPSRWHQQQQGRA 538
           +  E     +    +E  RV  N  +                +A
Sbjct: 421 LPLEVISNGYQISLEEARRVKFNTIETTLTHSSGPASYGGPRKA 464

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} Length = 465

 Score =  168 bits (427), Expect = 1e-46
 Identities = 69/467 (14%), Positives = 147/467 (31%), Gaps = 107/467 (22%)

Query: 148 EESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSW 207
           E ++R+ ++ G       +    +  R      +      P   + P+   A  + ++  
Sbjct: 23  EPTNRIQAERGLTEV---WDSNEQEFR-CAGVSVIRRTIEPHGLLLPSFTSAPELIYIEQ 78

Query: 208 GQGTITVI--------------------------------------RENNRESYNVKRGD 229
           G G   ++                                      ++ +++  +++ GD
Sbjct: 79  GNGITGMMIPGCPETYESGSQQFQGGEDERIREQGSRKFGMRGDRFQDQHQKIRHLREGD 138

Query: 230 IIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEA-----FYGAGG----------- 273
           I  +P+G + +  N + D+ L  V  I + N   Q +      FY AG            
Sbjct: 139 IFAMPAGVSHWAYN-NGDQPLVAVILIDTANHANQLDKNFPTRFYLAGKPQQEHSGEHQF 197

Query: 274 --------ENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALS-- 323
                    N  +  R F   +L  +F    +  +++  +QD    +   ++ +  +   
Sbjct: 198 SRESRRGERNTGNIFRGFETRLLAESFGVSEEIAQKLQAEQDDRGNIVRVQEGLHVIKPP 257

Query: 324 --------RSQEGPSIWPFAGE-----SRGTFNLF--GKRPSHSNNFGELFEADSNDFRP 368
                   +   G    P   E     +R   N+    K   ++   G L   +S +   
Sbjct: 258 SRAWEEREQGSRGSRYLPNGVEETICSARLAVNVDDPSKADVYTPEAGRLTTVNSFNLPI 317

Query: 369 LEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSS 428
           L  L ++ +   + + AM AP YN  +  +   V G G I+I                  
Sbjct: 318 LRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSV---------- 367

Query: 429 TREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGR 488
                          +      +VP    +V  A   +  E V F   +E  +   LAGR
Sbjct: 368 -----------FDEELSRGQLVVVPQNFAIVKQAF-EDGFEWVSF-KTSENAMFQSLAGR 414

Query: 489 NKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSRWHQQQQ 535
               + +  +     +    +E   +  N+ +   F+   +   +++
Sbjct: 415 TSAIRSLPIDVVSNIYQISREEAFGLKFNRPETTLFRSSGQGEYRRK 461

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A Length = 476

 Score =  150 bits (378), Expect = 9e-40
 Identities = 78/487 (16%), Positives = 156/487 (32%), Gaps = 127/487 (26%)

Query: 148 EESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSW 207
           +  +R+ S+ G +     +   +K  +      L     N      P++ +     ++  
Sbjct: 21  KPDNRIESEGGLIET---WNPNNKPFQ-CAGVALSRCTLNRNALRRPSYTNGPQEIYIQQ 76

Query: 208 GQGTITVI-----------------------RENNRESYNVKRGDIIRVPSGNTFYVTNT 244
           G+G   +I                       ++ +++ YN + GD+I VP+G  +++ N 
Sbjct: 77  GKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYN- 135

Query: 245 DDDEKLYIVKFIKSINLPGQ----YEAFYGAGGENPE----------------------- 277
           ++D  +  V  I + +L  Q       FY AG +  E                       
Sbjct: 136 NEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQEEE 195

Query: 278 ----SFLRAFSWEILESAFKTKRDSLERVLFQQDQ---GAMVKAS--------------- 315
               S L  F+ E LE AF   +   + +  + +    GA+V                  
Sbjct: 196 NEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLSVIKPPTDEQQQ 255

Query: 316 --------KQQIRALSRSQEGPSIWPFAGESRGTFNLFG----------------KRPSH 351
                   ++  +   + ++     P   +S+   N                       +
Sbjct: 256 RPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRHNIGQTSSPDIY 315

Query: 352 SNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIA 411
           +   G +  A S DF  L  L ++  + ++ K AM  P YN  +  +   + G   I++ 
Sbjct: 316 NPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVV 375

Query: 412 CPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVV 471
             +  R       +G                        IVP    V   +  ++N E V
Sbjct: 376 NCNGERVFDGELQEG---------------------RVLIVPQNFVVAARSQ-SDNFEYV 413

Query: 472 CFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSRWH 531
            F    +  +   LAG N +   +  E  +  FN ++ +  ++  N    +         
Sbjct: 414 SF-KTNDTPMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNNPFKFLVPPQE--- 469

Query: 532 QQQQGRA 538
            Q++  A
Sbjct: 470 SQKRAVA 476

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Length = 531

 Score =  138 bits (348), Expect = 2e-35
 Identities = 59/471 (12%), Positives = 139/471 (29%), Gaps = 66/471 (14%)

Query: 99  CQRECDRQEEGGQQRALCRFRCQEKYRREKEGEGGQHNTQEEEEEEEGDEESSRVTSQHG 158
           C    +  ++  QQ      + QE+ ++++  +G Q   QE+++E +G ++  +   +  
Sbjct: 88  CPETFEESQQSSQQGRQQE-QEQERQQQQQGEQGRQQGQQEQQQERQGRQQGRQQQEEGR 146

Query: 159 RVAFLPKFTQRSKLLRG---------LEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQ 209
           +         R +  +            + R G ++A P      ++ D D         
Sbjct: 147 QQEQQQGQQGRPQQQQQFRQLDRHQKTRRIREGDVVAIPAGVAYWSYNDGDQELVAVNLF 206

Query: 210 GTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFY 269
              +   + ++                           E+    +  +    P Q E   
Sbjct: 207 HVSSDHNQLDQNPRKFYLAGNPENEFNQQGQSQPRQQGEQGRPGQHQQPFGRPRQQEQQ- 265

Query: 270 GAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQ-GAMVKASK------------ 316
                N  +    F+ ++L  A     ++   +  Q D    +++               
Sbjct: 266 ----GNGNNVFSGFNTQLLAQALNVNEETARNLQGQNDNRNQIIQVRGNLDFVQPPRGRQ 321

Query: 317 QQIRALSRSQEGPSIWPFAGESRGTFNLF---------------GKRPSHSNNFGELFEA 361
           ++     + ++        GE      L                 +    S   G +   
Sbjct: 322 EREHEERQQEQLQQERQQQGEQLMANGLEETFCSLRLKENIGNPERADIFSPRAGRISTL 381

Query: 362 DSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSE 421
           +S++   L  L ++       +  + +P +N  +  V  V+ G+  +++   +      +
Sbjct: 382 NSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQ 441

Query: 422 RRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNI 481
              QG                       +IVP  H V+  A  N   E   F+       
Sbjct: 442 EVQQG---------------------QLFIVPQNHGVIQQAG-NQGFEYFAFKTEEN-AF 478

Query: 482 RFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSRWHQ 532
              LAGR    + +  E    A+    ++  ++  N+ +        +   
Sbjct: 479 INTLAGRTSFLRALPDEVLANAYQISREQARQLKYNRQETIALSSSQQRRA 529

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Length = 510

 Score =  135 bits (339), Expect = 2e-34
 Identities = 64/463 (13%), Positives = 137/463 (29%), Gaps = 89/463 (19%)

Query: 120 CQEKYRREKEGEGGQHNTQEEEEEEEGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKY 179
           C   Y    + +G ++ +Q      + +++S +    H +V                 ++
Sbjct: 88  CPSTYEEPAQ-QGRRYQSQRPPRRLQEEDQSQQQQDSHQKV----------------HRF 130

Query: 180 RLGILIANPQTFVTPTHLDADAVFFVSWGQGTIT------------VIRENNRESYNVKR 227
             G LIA P       + D D          T               +  N+ + +   +
Sbjct: 131 NEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNNNDNQLDQFPRRFNLAGNHEQEFLRYQ 190

Query: 228 GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEI 287
               +    +  Y   +   +     +         + E           +    F+ E 
Sbjct: 191 QQSRQSRRRSLPYSPYSPQSQPRQEEREFSPRGQHSRRERAGQEEEHEGGNIFSGFTPEF 250

Query: 288 LESAFKTKRDSLERVLF----QQDQGAMVKASK---------------QQIRALSRSQEG 328
           L  AF+     + + L      ++QGA+V                   ++       +  
Sbjct: 251 LAQAFQVDDRQIVQNLRGENESEEQGAIVTVRGGLRILSPDRKRGADEEEEYDEDEYEYD 310

Query: 329 PSIWPFAGESRGTFNL---------------FGKRPSHSNNF-GELFEADSNDFRPLEDL 372
                    SRG+ N                  + P   N   G L  A+  +   L  L
Sbjct: 311 EEDRRRGRGSRGSGNGIEETICTATVKKNIGRNRSPDIYNPQAGSLKTANELNLLILRWL 370

Query: 373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREE 432
            ++  Y N+ + A+  P YN+ +  +   + G  ++++   + +R   E   +G      
Sbjct: 371 GLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEG------ 424

Query: 433 GSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIF 492
                             +VP    V   +  ++N E V F+ ++       LAG N + 
Sbjct: 425 ---------------HVLVVPQNFAVAGKSQ-SDNFEYVAFKTDSR-PSIANLAGENSVI 467

Query: 493 KVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSRWHQQQQ 535
             +  E    ++    ++  ++  N    +F   P      + 
Sbjct: 468 DNLPEEVVANSYGLPREQARQLKNNNPFKFFV--PPSQQSPRA 508

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Length = 510

 Score = 48.4 bits (114), Expect = 4e-06
 Identities = 41/265 (15%), Positives = 83/265 (31%), Gaps = 14/265 (5%)

Query: 61  EKEQRERHREGESEEEKEWGGRHEWMNPGEPAEKHLRQCQRECDRQEEGGQQRALCRFRC 120
           +  Q  ++  GE+E E++             +    R    E +  E+  +     R R 
Sbjct: 258 DDRQIVQNLRGENESEEQGAIVTVRGGLRILSPDRKRGADEEEEYDEDEYEYDEEDR-RR 316

Query: 121 QEKYRREKEGEGGQHNTQEEEEEEEGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYR 180
               R    G      T   ++    +        Q G +           +LR L    
Sbjct: 317 GRGSRGSGNGIEETICTATVKKNIGRNRSPDIYNPQAGSLKTAN--ELNLLILRWLGLSA 374

Query: 181 LGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYN--VKRGDIIRVPSGNT 238
               +     FV   + +A ++ +   G+  + V+  N    Y+  ++ G ++ VP    
Sbjct: 375 EYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLVVPQN-- 432

Query: 239 FYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDS 298
           F V      +    V F              G       S +     E++ +++   R+ 
Sbjct: 433 FAVAGKSQSDNFEYVAFKTDSR--PSIANLAGEN-----SVIDNLPEEVVANSYGLPREQ 485

Query: 299 LERVLFQQDQGAMVKASKQQIRALS 323
             ++         V  S+Q  RA++
Sbjct: 486 ARQLKNNNPFKFFVPPSQQSPRAVA 510

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X Length = 79

 Score =  103 bits (258), Expect = 4e-27
 Identities = 26/74 (35%), Positives = 41/74 (55%)

Query: 341 TFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAV 400
            FNL  + P +SNN+G+L+E        L DLDI ++   +++GA+  P YNSR+T + V
Sbjct: 3   PFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILV 62

Query: 401 VVAGDGYIEIACPH 414
              G   +E+    
Sbjct: 63  ANEGRAEVELVGLE 76

>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y Length = 93

 Score = 98.4 bits (245), Expect = 4e-25
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 437 YHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVM 495
             + ++ +      ++P+  PV   A+  ++L +V   +NAE N R  LAG +  + + +
Sbjct: 3   LRRYAATLSEGDIIVIPSSFPVALKAA--SDLNMVGIGVNAENNERNFLAGHKENVIRQI 60

Query: 496 ESEAKELAFNTRADEVERVFGNQDQDWFFKG 526
             +  +L F    +EVE +  NQ + +F  G
Sbjct: 61  PRQVSDLTFPGSGEEVEELLENQKESYFVDG 91

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} Length = 496

 Score =  104 bits (260), Expect = 4e-24
 Identities = 77/487 (15%), Positives = 150/487 (30%), Gaps = 107/487 (21%)

Query: 148 EESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSW 207
           E  +R+ S+ G +     +   +K  R      L            P + +A    F+  
Sbjct: 19  EPDNRIESEGGLIET---WNPNNKQFRC-AGVALSRATLQRNALRRPYYSNAPQEIFIQQ 74

Query: 208 GQGTITVI----------------------RENNRESYNVKRGDIIRVPSGNTFYVTNTD 245
           G G   ++                      R+ +++    + GDII VP+G  F++ N  
Sbjct: 75  GNGYFGMVFPGCPETFEEPQESEQGEGRRYRDRHQKVNRFREGDIIAVPTGIVFWMYNDQ 134

Query: 246 DDEKLYIVKFIKSIN---LPGQYEAFYGAGGENPE-------------------SFLRAF 283
           D   + +       +   L      FY AG    E                   +    F
Sbjct: 135 DTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEFLQYQHQQGGKQEQENEGNNIFSGF 194

Query: 284 SWEILESAFKTKRDSLERVLF---QQDQGAMVKASK-----QQIRALSRSQEGPSIWPFA 335
             + LE AF   R  ++R+      +++GA+VK              +R Q G       
Sbjct: 195 KRDFLEDAFNVNRHIVDRLQGRNEDEEKGAIVKVKGGLSIISPPEKQARHQRGSRQEEDE 254

Query: 336 GESRGTFNLFGKR------------PSHSNNFGELFEADSNDFRPLEDLDITVSYANISK 383
            E +   +  G R            P H    GE  E D  +    +         N  +
Sbjct: 255 DEEKQPRHQRGSRQEEEEDEDEERQPRHQRRRGEEEEEDKKERGGSQKGKSRRQGDNGLE 314

Query: 384 GAM-------------AAPFYNSRSTKVAVVVAGDGYI----------------EIACPH 414
             +             +   YN  + ++  V + D  +                 +  PH
Sbjct: 315 ETVCTAKLRLNIGPSSSPDIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPH 374

Query: 415 VSRSSSERRH--QGSSTREEGSATYHKV-SSRIRTDSAYIVPAGHPVVTVASQNNNLEVV 471
            + +++   +  +G +  +  +   + V    +    A  VP  + V   +  ++    V
Sbjct: 375 YNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRALTVPQNYAVAAKSL-SDRFSYV 433

Query: 472 CFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSRWH 531
            F+ N +      LAG + +   +  +     FN + +E  ++  N    +         
Sbjct: 434 AFKTN-DRAGIARLAGTSSVINNLPLDVVAATFNLQRNEARQLKSNNPFKFLVPAR---- 488

Query: 532 QQQQGRA 538
            + + RA
Sbjct: 489 -ESENRA 494

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} Length = 496

 Score = 56.5 bits (135), Expect = 1e-08
 Identities = 47/309 (15%), Positives = 109/309 (35%), Gaps = 17/309 (5%)

Query: 21  LALATKDPELKQCKHQCRARQQYDEK-QKEQCARTCEEYYKEKEQRERHREGESEEEKEW 79
           L  A         + Q R   +      K +   +     +++ + +R    E +E++E 
Sbjct: 199 LEDAFNVNRHIVDRLQGRNEDEEKGAIVKVKGGLSIISPPEKQARHQRGSRQEEDEDEEK 258

Query: 80  GGRHEWMNPGEPAEKHLRQCQRECDRQEEGGQQRALCRFRCQEKYRREKEGEGGQHNTQE 139
             RH+  +  E  E    + Q    R+    ++         +K +  ++G+ G   T  
Sbjct: 259 QPRHQRGSRQEEEEDEDEERQPRHQRRRGEEEEEDKKERGGSQKGKSRRQGDNGLEETVC 318

Query: 140 EEEEEEGDEESSR---VTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTH 196
             +       SS       + GR+  +   +    +LR L+       +     FV   +
Sbjct: 319 TAKLRLNIGPSSSPDIYNPEAGRIKTVT--SLDLPVLRWLKLSAEHGSLHKNAMFVPHYN 376

Query: 197 LDADAVFFVSWGQGTITVIRENNRESYN--VKRGDIIRVPSGNTFYVTNTDDDEKLYIVK 254
           L+A+++ +   G+  + V+  N    ++  ++ G  + VP    + V      ++   V 
Sbjct: 377 LNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRALTVPQN--YAVAAKSLSDRFSYVA 434

Query: 255 FIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKA 314
           F  +           G       S +     +++ + F  +R+   ++        +V A
Sbjct: 435 FKTNDR--AGIARLAGTS-----SVINNLPLDVVAATFNLQRNEARQLKSNNPFKFLVPA 487

Query: 315 SKQQIRALS 323
            + + RA +
Sbjct: 488 RESENRASA 496

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score = 79.1 bits (194), Expect = 3e-16
 Identities = 54/343 (15%), Positives = 103/343 (30%), Gaps = 47/343 (13%)

Query: 188 PQTFVTP-THLDADAVFFVSWGQGTITVIRENNR-ESYNVKRGDIIRVPSGNTFYVTNTD 245
           P        H +A    +V  G+  IT+     + E  +V +G +   P G    +    
Sbjct: 61  PGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPRGWGHSIEGIG 120

Query: 246 DDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQ 305
            D   +++ F        +   F          +L       +E         + ++  +
Sbjct: 121 PDTAKFLLVFNDGT--FSEGATFSVT------DWLSHTPIAWVEENLGWTAAQVAQLPKK 172

Query: 306 QD-QGAMVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSN 364
           Q    +   AS     A  + Q      P       T NL G++P  S    EL  A + 
Sbjct: 173 QVYISSYGPASGPLASATPQGQTAKIEVPH------THNLLGQQPLVSLGGNELRLASAK 226

Query: 365 DFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRH 424
           +F      ++T +  ++  GAM    ++  + +   V+ G+  + +              
Sbjct: 227 EFPGSF--NMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFAS----------- 273

Query: 425 QGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFP 484
                  EG A      SR++      VP G+      S    L++V    N      + 
Sbjct: 274 -------EGKA----SVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVV-FNDG---DYQ 318

Query: 485 LAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGP 527
               +       S      F    +  +++        F    
Sbjct: 319 SIDLSTWLASNPSSVLGNTFQISPELTKKL--PVQDTIFSLPT 359

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score = 54.0 bits (129), Expect = 5e-08
 Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 13/135 (9%)

Query: 170 SKLLRGLEKYRLGILIANPQTFVTP-THLDADAVFFVSWGQGTITVIRENNR-ESYNVKR 227
           +K   G       ++   P        H +AD   +V  G+  +TV     +     +++
Sbjct: 225 AKEFPGSFNMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQ 284

Query: 228 GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEI 287
           GD+  VP G    + N+   + L IV         G Y++   +      ++L +    +
Sbjct: 285 GDVGYVPKGYGHAIRNS-SQKPLDIVVVFND----GDYQSIDLS------TWLASNPSSV 333

Query: 288 LESAFKTKRDSLERV 302
           L + F+   +  +++
Sbjct: 334 LGNTFQISPELTKKL 348

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score = 52.5 bits (125), Expect = 1e-07
 Identities = 26/207 (12%), Positives = 54/207 (26%), Gaps = 32/207 (15%)

Query: 315 SKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDI 374
             +Q R+LS    G  +  F      T+  F K P    + G   +  + +F   +   +
Sbjct: 2   QSEQWRSLSNVVWGKDLPAF------TYA-FSKTPLVLYDGGTTKQVGTYNFPVSKG--M 52

Query: 375 TVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGS 434
              Y ++  GA+    +++ + + A V+ G   I +                        
Sbjct: 53  AGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLT-------------------SPEG 93

Query: 435 ATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKV 494
                    +     +  P G          +  + +    N                  
Sbjct: 94  KVEIAD---VDKGGLWYFPRGWGHSIEGIGPDTAKFLLV-FNDGTFSEGATFSVTDWLSH 149

Query: 495 MESEAKELAFNTRADEVERVFGNQDQD 521
                 E      A +V ++   Q   
Sbjct: 150 TPIAWVEENLGWTAAQVAQLPKKQVYI 176

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score = 76.0 bits (186), Expect = 5e-15
 Identities = 36/328 (10%), Positives = 96/328 (29%), Gaps = 45/328 (13%)

Query: 188 PQTFVTPTHLDADAVFFVSWGQGTITVIRENNR-ESYNVKRGDIIRVPSGNTFYVTNTDD 246
           P               ++ +G   +T++ E  R    +V  GD+   PSG    +   ++
Sbjct: 88  PGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEE 147

Query: 247 DEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQ 306
             +  +V             +F          +L     E++ + F   ++ +  +  ++
Sbjct: 148 GAEFLLVF---------DDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKE 198

Query: 307 DQGAMVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDF 366
                 +        +     G   +PF            ++    +  G+++ ADS +F
Sbjct: 199 KYIFENQLPGSLKDDIVEGPNGEVPYPF-------TYRLLEQEPIESEGGKVYIADSTNF 251

Query: 367 RPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQG 426
           +  +   I  +   +  GAM    ++  + +    ++G   + +                
Sbjct: 252 KVSK--TIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFAS------------- 296

Query: 427 SSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLA 486
                +G A     +   +      VP           +  L  +      +    +   
Sbjct: 297 -----DGHA----RTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEI-FKDD---HYADV 343

Query: 487 GRNKIFKVMESEAKELAFNTRADEVERV 514
             N+   ++     +   +   D  + +
Sbjct: 344 SLNQWLAMLPETFVQAHLDLGKDFTDVL 371

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score = 50.6 bits (120), Expect = 7e-07
 Identities = 27/174 (15%), Positives = 56/174 (32%), Gaps = 20/174 (11%)

Query: 147 DEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTP-THLDADAVFFV 205
             E   + S+ G+V         S   +  +     ++   P        H +     + 
Sbjct: 230 LLEQEPIESEGGKVYIA-----DSTNFKVSKTIASALVTVEPGAMRELHWHPNTHEWQYY 284

Query: 206 SWGQGTITVIRENNR-ESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQ 264
             G+  +TV   +    ++N + GD+  VP     YV N   DE L  ++  K       
Sbjct: 285 ISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENI-GDEPLVFLEIFKD----DH 339

Query: 265 YEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQ 318
           Y             +L       +++     +D  +     +++  +VK    +
Sbjct: 340 YADVSLN------QWLAMLPETFVQAHLDLGKDFTDV--LSKEKHPVVKKKCSK 385

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Length = 125

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 175 GLEKYRLGILIANPQTFVTP--THLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIR 232
            L    + I        V    +H   + ++ +  G+G IT+    + E   ++ GD +R
Sbjct: 22  ALTGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI----DGEKIELQAGDWLR 77

Query: 233 VPSGNTFYVTNTDDDEKLYIV 253
           +       ++   D    ++ 
Sbjct: 78  IAPDGKRQISAASDSPIGFLC 98

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A* Length = 163

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 193 TPTHL-DADAVFFVSWGQGTITV-----IRENNRESYNVKRGDIIRVPSGNTFYVTNTDD 246
           TP H    + VF V  G+GT+ +           +     +     +P  +   V N+D+
Sbjct: 54  TPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDE 113

Query: 247 DEKLYIV 253
            E L ++
Sbjct: 114 HEDLQVL 120

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Length = 337

 Score = 44.0 bits (103), Expect = 8e-05
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 195 THLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK 254
            H      F+   GQ T+      + +   +  GD + VP+             K+  V 
Sbjct: 235 YHEYHTETFYCLEGQMTMWT----DGQEIQLNPGDFLHVPANTVHSYRLDSHYTKMVGV- 289

Query: 255 FIKSINLPGQYEAFYGAGGENPES 278
                 +PG +E F+   G+  E 
Sbjct: 290 -----LVPGLFEPFFRTLGDPYEG 308

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Length = 354

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 192 VTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKL 250
           V P+H  +  A+ F+  G+G  T +   + E   +  GD I  P        N  D+  +
Sbjct: 112 VAPSHRHNQSALRFIVEGKGAFTAV---DGERTPMNEGDFILTPQWRWHDHGNPGDEPVI 168

Query: 251 YIV 253
           ++ 
Sbjct: 169 WLD 171

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Length = 105

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 6/95 (6%)

Query: 160 VAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTP-THLDADAVFFVSWGQGTITVIREN 218
             + P+   +  + +  E+    +    P        H  +D V++   G+  + V    
Sbjct: 10  ARYNPEKMAKIPVFQS-ERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---- 64

Query: 219 NRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIV 253
             E   +  G     P+G    V N      L +V
Sbjct: 65  GEEEALLAPGMAAFAPAGAPHGVRNESASPALLLV 99

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Length = 113

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 12/100 (12%)

Query: 171 KLLRGLEKYRLGILIANPQTFVTP---THLDADAVFFVSWGQGTITVIRENNRESYNVKR 227
           K+L  L + +   ++  P          H  AD   FV  G G   V    +  +  ++ 
Sbjct: 13  KVLFSLRQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV----DGHTQALQA 68

Query: 228 GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEA 267
           G +I +  G    + NT D      +K + +   P  Y+A
Sbjct: 69  GSLIAIERGQAHEIRNTGDTP----LKTV-NFYHPPAYDA 103

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 Length = 394

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 191 FVTPTHLDAD-AVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEK 249
             T  H      ++ V+ GQG   V      + ++    DI  VP+       NT + + 
Sbjct: 305 EHTKAHRHTGNVIYNVAKGQGYSIV----GGKRFDWSEHDIFCVPAWTWHEHCNTQERDD 360

Query: 250 LYIVKF 255
             +  F
Sbjct: 361 ACLFSF 366

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A* Length = 190

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 23/140 (16%), Positives = 52/140 (37%), Gaps = 13/140 (9%)

Query: 121 QEKYRREKEGEGGQHNTQEEEEEEEGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYR 180
           ++  RR  + EG   + +  +E  E ++           V  + +  +   L        
Sbjct: 22  KKSVRRLSDMEGYFVDERAWKELVEKEDPVVY------EVYAVEQEEKEGDLNFATTVLY 75

Query: 181 LGILIANPQTFVTPTH----LDADAVFFVSWGQGTITVI-RENNRESYNVKRGDIIRVPS 235
            G +    + F T  H    LD   V+    G+G + +   E + +  +++ G ++ VP 
Sbjct: 76  PGKV--GKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPP 133

Query: 236 GNTFYVTNTDDDEKLYIVKF 255
                  N  D+  +++  +
Sbjct: 134 YWAHRTVNIGDEPFIFLAIY 153

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* Length = 368

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 192 VTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKL 250
             P H    +A  FV  G+G  TV+   N +   + RGD++  P        N  D    
Sbjct: 115 TAPEHRHSQNAFRFVVEGEGVWTVV---NGDPVRMSRGDLLLTPGWCFHGHMNDTDQPMA 171

Query: 251 YIV 253
           +I 
Sbjct: 172 WID 174

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9 Length = 133

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 195 THLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK 254
            H     ++++  G+G        N +   +K GD+    SG +  + NT  +  L  + 
Sbjct: 74  KHEGEFEIYYILLGEGVFHD----NGKDVPIKAGDVCFTDSGESHSIENT-GNTDLEFLA 128

Query: 255 FI 256
            I
Sbjct: 129 VI 130

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	540
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	100.0
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	100.0
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	100.0
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	100.0
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	100.0
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	100.0
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	100.0
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	100.0
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	100.0
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	100.0
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	100.0
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	100.0
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	100.0
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	100.0
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	100.0
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	100.0
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	99.96
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	99.95
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	99.95
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	99.95
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	99.94
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	99.94
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	99.94
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	99.93
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	99.93
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	99.92
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	99.92
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	99.91
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	99.9
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	99.89
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	99.89
1dgw_Y	93	Canavalin; duplicated swiss-roll beta barrels, loo	99.88
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	99.87
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	99.84
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	99.81
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	99.79
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	99.78
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	99.75
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	99.7
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	99.69
1sef_A	274	Conserved hypothetical protein; structural genomic	99.66
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	99.64
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	99.64
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	99.63
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	99.61
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	99.58
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	99.57
1sfn_A	246	Conserved hypothetical protein; structural genomic	99.53
1dgw_Y	93	Canavalin; duplicated swiss-roll beta barrels, loo	99.38
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	99.19
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	99.12
3h8u_A	125	Uncharacterized conserved protein with double-STR	99.11
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	99.09
1v70_A	105	Probable antibiotics synthesis protein; structural	99.06
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	99.06
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	99.05
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	99.03
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	98.99
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	98.98
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	98.98
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	98.98
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	98.98
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	98.98
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	98.97
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	98.96
2l37_A	43	Ribosome-inactivating protein luffin P1; hydrolase	98.95
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	98.94
4i4a_A	128	Similar to unknown protein; structural genomics, P	98.94
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	98.92
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	98.91
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	98.9
3h8u_A	125	Uncharacterized conserved protein with double-STR	98.89
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	98.89
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	98.88
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	98.88
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	98.87
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	98.87
1v70_A	105	Probable antibiotics synthesis protein; structural	98.87
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	98.87
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	98.86
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	98.85
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	98.85
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	98.84
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	98.83
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	98.82
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	98.81
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	98.8
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	98.8
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	98.8
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	98.8
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	98.79
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	98.77
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	98.77
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	98.76
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	98.75
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	98.75
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	98.75
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	98.74
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	98.72
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	98.72
1sef_A	274	Conserved hypothetical protein; structural genomic	98.71
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	98.71
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	98.7
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	98.7
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	98.69
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	98.69
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	98.69
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	98.68
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	98.67
4i4a_A	128	Similar to unknown protein; structural genomics, P	98.65
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	98.64
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	98.64
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	98.62
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	98.61
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	98.61
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	98.6
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	98.59
1sfn_A	246	Conserved hypothetical protein; structural genomic	98.58
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	98.57
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	98.57
2l37_A	43	Ribosome-inactivating protein luffin P1; hydrolase	98.57
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	98.56
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	98.56
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	98.56
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	98.55
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	98.54
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	98.53
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	98.5
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	98.5
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	98.5
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	98.5
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	98.49
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	98.49
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	98.48
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	98.48
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	98.48
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	98.45
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	98.38
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	98.33
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	98.31
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	98.31
3bcw_A	123	Uncharacterized protein; structural genomics, join	98.29
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	98.28
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	98.27
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	98.25
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	98.24
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	98.21
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	98.19
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	98.17
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	98.17
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	98.17
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	98.14
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.09
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	98.05
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	98.05
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	98.04
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	98.02
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	97.93
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	97.87
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	97.79
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	97.79
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	97.78
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	97.78
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	97.71
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	97.67
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	97.67
3bcw_A	123	Uncharacterized protein; structural genomics, join	97.67
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	97.65
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	97.61
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	97.56
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	97.47
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	97.4
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	97.4
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	97.28
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	97.25
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	97.22
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	97.11
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	97.06
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	97.05
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	97.04
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	97.01
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	96.95
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	96.87
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	96.84
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	96.82
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	96.58
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	96.55
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	96.52
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	96.48
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	96.46
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	96.42
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	96.23
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	96.14
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	96.13
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	96.09
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	96.07
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	96.01
3uss_A	211	Putative uncharacterized protein; cupin, three his	95.93
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	95.9
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	95.89
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	95.83
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	95.8
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	95.74
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	95.42
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	95.41
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	95.1
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	95.1
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	94.98
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	94.93
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	94.83
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	94.82
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	94.7
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	94.66
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	94.55
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	94.54
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	94.39
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	94.34
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	94.33
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	94.3
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	94.1
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	94.05
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	94.02
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	94.0
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	93.97
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	93.95
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	93.87
4diq_A	489	Lysine-specific demethylase NO66; structural genom	93.86
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	93.8
4diq_A	489	Lysine-specific demethylase NO66; structural genom	93.79
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	93.65
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	93.52
3kv5_D	488	JMJC domain-containing histone demethylation prote	93.46
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	93.45
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	93.41
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	93.39
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	93.32
2l2r_A	37	Antimicrobial peptide ecamp1; disulfide-stabilized	93.24
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	93.23
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	93.06
1xru_A	282	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer;	93.03
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	92.91
4hn1_A	201	Putative 3-epimerase in D-allose pathway; 3'-monoe	92.9
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	92.89
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	92.89
3kv9_A	397	JMJC domain-containing histone demethylation prote	92.85
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	92.69
3loi_A	172	Putative uncharacterized protein; beta barrel, unk	92.19
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	92.07
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	91.74
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	91.55
4hn1_A	201	Putative 3-epimerase in D-allose pathway; 3'-monoe	91.44
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	91.3
1e5r_A	290	Proline oxidase; oxidoreductase, oxygenase, 2-oxog	90.87
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	90.67
3kv5_D	488	JMJC domain-containing histone demethylation prote	90.36
3m3i_A	225	Putative uncharacterized protein; PFAM:PF06172, st	90.26
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	89.88
3rcq_A	197	Aspartyl/asparaginyl beta-hydroxylase; structural	89.44
1xe7_A	203	YML079WP, hypothetical 22.5 kDa protein in TUB1-CP	89.44
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	89.29
1eyb_A	471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	88.93
1eyb_A	471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	88.71
3kv9_A	397	JMJC domain-containing histone demethylation prote	88.64
2cmy_B	34	Beta trypsin, veronica hederifolia trypsin inhibit	88.57
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	88.48
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	88.46
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	88.44
2qdr_A	303	Uncharacterized protein; double-stranded beta-heli	87.86
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	87.78
3uss_A	211	Putative uncharacterized protein; cupin, three his	87.56
2oyz_A	94	UPF0345 protein VPA0057; unknown function, structu	87.13
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	86.87
1znp_A	154	Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0,	86.8
3loi_A	172	Putative uncharacterized protein; beta barrel, unk	86.57
2rg4_A	216	Uncharacterized protein; rhodobacterales, oceanico	86.5
3hqx_A	111	UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MC	84.4
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	84.32
2lqx_A	41	Trypsin inhibitor BWI-2C; helical hairpin, hydrola	84.6
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	83.55
1e5r_A	290	Proline oxidase; oxidoreductase, oxygenase, 2-oxog	83.19
3rcq_A	197	Aspartyl/asparaginyl beta-hydroxylase; structural	82.38
3kmh_A	246	D-lyxose isomerase; cupin beta-barrel, structural	82.11
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	81.32
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	81.0
1znp_A	154	Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0,	80.98
3m3i_A	225	Putative uncharacterized protein; PFAM:PF06172, st	80.69
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	80.63

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=100.00  E-value=6.7e-82  Score=671.38  Aligned_cols=379  Identities=34%  Similarity=0.596  Sum_probs=336.0

Q ss_pred             cCCcccceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEe
Q 040805          145 EGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYN  224 (540)
Q Consensus       145 ~~~~f~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~  224 (540)
                      ++++|+++|+|++|+|++|++||+++++|+||.+|+++.++|+|||+++|||++|++|+||++|+|++|+|++++..+++
T Consensus        10 ~~~~f~~~~~se~G~i~~l~~f~~~s~~l~~l~~~~l~~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~~~~~~   89 (418)
T 3s7i_A           10 PSRRFSTRYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPKHADADNILVIQQGQATVTVANGNNRKSFN   89 (418)
T ss_dssp             CGGGEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEE
T ss_pred             ccccccceEEcCCcEEEEecccCCcchhcccccceEEEEEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCCEEEEE
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhc
Q 040805          225 VKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLF  304 (540)
Q Consensus       225 l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~  304 (540)
                      |++||||+||+|++||++|+|+++.|+|+++.+++++||.+..|||||+.++.+||++||++||++||+|+.+++++|+.
T Consensus        90 l~~GDv~~~P~G~~h~~~N~g~~~~l~i~~l~~~s~~pg~~~~f~laG~~~~~s~~~gf~~evLa~af~v~~~~v~kl~~  169 (418)
T 3s7i_A           90 LDEGHALRIPSGFISYILNRHDNQNLRVAKISMPVNTPGQFEDFFPASSRDQSSYLQGFSRNTLEAAFNAEFNEIRRVLL  169 (418)
T ss_dssp             EETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEECSSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHTT
T ss_pred             ecCCCEEEECCCCeEEEEecCCCccEEEEEeecCcCCCCccceeeccCCcchhHHhhcCCHHHHHHHHCcCHHHHHhhhc
Confidence            99999999999999999999877899999999999999999999999999889999999999999999999999999994


Q ss_pred             c---------------------CCCCcEEEccchhhhccCCCCCCCCcCCCC----CCCCceeEcCCCCCcccCCCceEE
Q 040805          305 Q---------------------QDQGAMVKASKQQIRALSRSQEGPSIWPFA----GESRGTFNLFGKRPSHSNNFGELF  359 (540)
Q Consensus       305 ~---------------------q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~----~~~~~~fnL~~~~P~~~n~~G~~~  359 (540)
                      .                     +..|.||++++++++.|+++..  +.++.+    ...+++|||.+++|+|+|.+|+++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~q~~g~Iv~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~nl~~~~p~~~n~~G~~~  247 (418)
T 3s7i_A          170 EENAGGEQEERGQRRWSTRSSENNEGVIVKVSKEHVEELTKHAK--SVSKKGSEEEGDITNPINLREGEPDLSNNFGKLF  247 (418)
T ss_dssp             SCC--------------------CCCSEEECCHHHHHHHHTTCB--C--------CTTCCCCEETTCSCCSEEETTEEEE
T ss_pred             ccccccccccccccccccccccccCCceEEcChhhhhhcccccc--ccCCCCcCcccCCCcccccccCCCceeCCCCeEE
Confidence            4                     3469999999999998987632  211111    124789999999999999999999


Q ss_pred             EecCCCC-CCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccC---CCccccCCc
Q 040805          360 EADSNDF-RPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQG---SSTREEGSA  435 (540)
Q Consensus       360 ~~~~~~~-p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~---~~~~~~~~~  435 (540)
                      .+++.+| |+|+++||++++++|.||||++|||||||++|+||++|+|+++||+|++..+++++++++   ++++++...
T Consensus       248 ~~~~~~~~p~L~~~gis~~r~~l~pgg~~~PH~~p~A~ei~yV~~G~g~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (418)
T 3s7i_A          248 EVKPDKKNPQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEEEDEDEEEEGSNR  327 (418)
T ss_dssp             EECSBTTBHHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEEECCEEEEEEEEEEC-------------------CCE
T ss_pred             EechHHcchhhccCCeeEEEEEecCCceeCceecCCCCEEEEEEeCeEEEEEEeCCCccccccccccccccccccccccc
Confidence            9999999 999999999999999999999999999999999999999999999998864322221111   111222345


Q ss_pred             cceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCcccccccc-ccccccCCHHHHHHHcCCCHHHHHHh
Q 040805          436 TYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGR-NKIFKVMESEAKELAFNTRADEVERV  514 (540)
Q Consensus       436 ~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~-~svl~~~~~evla~AF~vs~e~v~kl  514 (540)
                      .|++++.+|++|||||||+||+||++|++  +|+|++|++++++|.+++|||+ +|||++||++||++||+++.++|++|
T Consensus       328 ~~~~~~~~l~~GDV~vvP~G~~~~~~~~~--~l~~v~f~~~~~~~~~~~LAG~~~sv~~~~~~evla~af~v~~~~v~~L  405 (418)
T 3s7i_A          328 EVRRYTARLKEGDVFIMPAAHPVAINASS--ELHLLGFGINAENNHRIFLAGDKDNVIDQIEKQAKDLAFPGSGEQVEKL  405 (418)
T ss_dssp             EEEEEEEEECTTCEEEECTTCCEEEEESS--CEEEEEEEESCTTCCEEESSSSTTBHHHHSCHHHHHHHSSSCHHHHHHH
T ss_pred             cceEEEeeeCCCCEEEECCCCEEEEECCC--CEEEEEEEcCCCCCcceEccCchhhhhhcCCHHHHHHHhCCCHHHHHHH
Confidence            67899999999999999999999999874  5999999999989999999998 59999999999999999999999999


Q ss_pred             hcCCCCceEEcCC
Q 040805          515 FGNQDQDWFFKGP  527 (540)
Q Consensus       515 ~~~q~e~~f~~~~  527 (540)
                      +.+|++++|+++.
T Consensus       406 ~~~q~e~~~~~~~  418 (418)
T 3s7i_A          406 IKNQKESHFVSAR  418 (418)
T ss_dssp             HHTCCSCSEEECC
T ss_pred             HhcCCcceeecCC
Confidence            9999999999863

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=100.00  E-value=1.6e-78  Score=651.09  Aligned_cols=371  Identities=29%  Similarity=0.530  Sum_probs=321.2

Q ss_pred             cCCcccceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEe
Q 040805          145 EGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYN  224 (540)
Q Consensus       145 ~~~~f~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~  224 (540)
                      +..+|++++++++|+++.|++|+.+++.|+++.+++++.++|+||++.+|||++++||+||++|++++++|++++.++++
T Consensus        52 ~~~~~~~~i~~e~G~i~~l~~~~~~~~~l~~~g~~s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~  131 (445)
T 2cav_A           52 RSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYK  131 (445)
T ss_dssp             CGGGEEEEEEETTEEEEEECCTTSSCSTTGGGTTEEEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEE
T ss_pred             chhhcCceEEcCCEEEEEEeccCcccccccccCcEEEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCEEEE
Confidence            44557779999999999999999988999988889999999999999999999999999999999999999999889999


Q ss_pred             eCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhc
Q 040805          225 VKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLF  304 (540)
Q Consensus       225 l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~  304 (540)
                      |++||||+||+|++||++|+|++++|++|++++++++|+.+.+|+|+|+.++.+||++||++||++||+++.+++++|++
T Consensus       132 l~~GDv~~~P~G~~H~~~N~g~~~~l~~l~v~~~~~~pg~~~~F~laG~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~~  211 (445)
T 2cav_A          132 LDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLL  211 (445)
T ss_dssp             EETTEEEEECTTCCEEEEECCSSCCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHTT
T ss_pred             ecCCCEEEECCCCcEEEEECCCCCCEEEEEEeccCCCCCceeeeeccCCCchhhhhhcCCHHHHHHHhCCCHHHHHhhhc
Confidence            99999999999999999999856799999999999999999999999999888999999999999999999999999995


Q ss_pred             c-CCCCcEEEccchhhhccCCCCCCCCcCCCCCCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcC
Q 040805          305 Q-QDQGAMVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISK  383 (540)
Q Consensus       305 ~-q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~p  383 (540)
                      . +++|+||++++++++++.++.. .+.+....+...+|||++++|+|+|.+|+++.+++.+||+|+++||++++++|.|
T Consensus       212 ~~~~~g~Iv~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~l~~~~p~~~~~~G~v~~~~~~~fP~L~~l~is~~~v~l~p  290 (445)
T 2cav_A          212 QEEQEGVIVKMPKDQIQEISKHAQ-SSSRKTLSSQDKPFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNE  290 (445)
T ss_dssp             SCCSSSSEEECCCC---------------------CCCEETTSSCCSEESSSEEEEEECTTTCHHHHHHTEEEEEEEECT
T ss_pred             ccCCCCcEEEeCCcchhhhccccc-ccCCCCCCCcccceeccccCCCccCCCceEEEeChHHCcccccCCCceEEEEeeC
Confidence            4 4579999999888777765421 1111222345679999999999999999999999999999999999999999999


Q ss_pred             CCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEec
Q 040805          384 GAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS  463 (540)
Q Consensus       384 ggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~  463 (540)
                      |||++|||||||++|+||++|+++++||++++..+           +++.+..|++++.+|++|||||||+||+|+++|+
T Consensus       291 g~m~~PH~hp~A~ei~~V~~G~~~v~vv~~~~~~~-----------~~~~g~~~~~~~~~l~~GdV~vvP~g~~h~~~n~  359 (445)
T 2cav_A          291 GALFVPHYNSRATVILVANEGRAEVELVGLEQQQQ-----------QGLESMQLRRYAATLSEGDIIVIPSSFPVALKAA  359 (445)
T ss_dssp             TEEEEEEEESSCEEEEEEEESCEEEEEEEC----------------------CCEEEEEEECTTCEEEECTTCCEEEEES
T ss_pred             CceeeeEECCCCcEEEEEEeeEEEEEEEeCCCccc-----------ccccCcceEEEEeEecCCcEEEEcCCcEEEEEcC
Confidence            99999999999999999999999999999987421           1122345678999999999999999999999998


Q ss_pred             CCCCEEEEEEEecCCCCccccccc-cccccccCCHHHHHHHcCCCHHHHHHhhcCCCCceEEcCCCc
Q 040805          464 QNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSR  529 (540)
Q Consensus       464 ~~e~l~~v~F~~~a~~~~~~~LAG-~~svl~~~~~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~~  529 (540)
                        +++.|++|.+++++|.+++||| .++||+++|++||++||+++.++|++|+.+|++++|+++|++
T Consensus       360 --~~~~~v~f~~~~~~~~~~~laG~~~sv~~~~p~~vla~af~v~~~~v~~l~~~~~e~~~~~~~~~  424 (445)
T 2cav_A          360 --SDLNMVGIGVNAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEELLENQKESYFVDGQPR  424 (445)
T ss_dssp             --SSEEEEEEEESCTTCCEEESSSSTTBSGGGSCHHHHHHHSSSCHHHHHHHHHHCCSCSEEECC--
T ss_pred             --CCeEEEEEEccCCCCCcEEcccchhhhhhhCCHHHHHHHHCcCHHHHHHHHhcCCccEEeCCchh
Confidence              4799999999998899999999 899999999999999999999999999999999999999874

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=100.00  E-value=2.8e-76  Score=632.23  Aligned_cols=373  Identities=29%  Similarity=0.534  Sum_probs=336.4

Q ss_pred             cCCc-ccceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEE
Q 040805          145 EGDE-ESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESY  223 (540)
Q Consensus       145 ~~~~-f~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~  223 (540)
                      +..+ |++++++++|+|+++..|+.+++.|+++.+++++.++|+||++++|||+++++|+||++|+|++++|++++.+++
T Consensus        26 ~~~~~~~~~~~se~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~~~  105 (434)
T 2ea7_A           26 NSDRWFRTLYRNEWGHIRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRDSY  105 (434)
T ss_dssp             CTTTSEEEEEEETTEEEEEECCSTTTCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEE
T ss_pred             eccccccceEEcCCEEEEEEeccCCcccccCccccEEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCEEE
Confidence            6666 999999999999999999998899999888999999999999999999999999999999999999999889999


Q ss_pred             eeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHh
Q 040805          224 NVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVL  303 (540)
Q Consensus       224 ~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~  303 (540)
                      +|++||||+||+|++||++|+|++++|++|++++++++|+.+.+|+|+|+.++.+||++||++||++||+|+.+++++|+
T Consensus       106 ~l~~GDv~~iP~G~~H~~~N~g~~e~l~~l~~~~~s~~pg~~~~f~l~g~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~  185 (434)
T 2ea7_A          106 ILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIPVNNPHRFQDFFLSSTEAQQSYLRGFSKNILEASFDSDFKEINRVL  185 (434)
T ss_dssp             EEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHH
T ss_pred             EeCCCCEEEECCCccEEEEeCCCCCCeEEEEEecCCCCCCceeeeeecCCcchhhhhhcCCHHHHHHHhCCCHHHHHhhh
Confidence            99999999999999999999986679999999999999999999999999888899999999999999999999999999


Q ss_pred             -ccC----------CCCcEEEccchhhhccCCCCCCCCcCCCCCCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccc
Q 040805          304 -FQQ----------DQGAMVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDL  372 (540)
Q Consensus       304 -~~q----------~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l  372 (540)
                       +.+          .+|+||++++++++.++++... +.+....+...+|||++++|+|++.+|+++++++.+||+|+++
T Consensus       186 ~~~~~~~~~~~~~q~~g~Iv~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~l~~~~p~~~~~gG~v~~~~~~~~P~L~~l  264 (434)
T 2ea7_A          186 FGEERQQQQGEESREEGVIVELKREQIQELMKHAKS-SSRKELSSQDEPFNLRNSKPIYSNKFGRWYEMTPEKNPQLKDL  264 (434)
T ss_dssp             TCC---------CCCSSSEEECCHHHHHHHHTTSBC-CCSSCTTCSSSCEETTSSCCSEEETTEEEEEECTTTCHHHHHH
T ss_pred             hcccccccccccccccceEEECCcccChhhcccccc-cCCCCCCCcccceeeccCCCceeCCCcEEEEEChhhCcccccc
Confidence             653          4699999998888777654211 1122333556799999999999999999999999999999999


Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      +|++++++|.||||++|||||+|++|+||++|+|+++||++++..+         +++++.+..|++++.+|++||||||
T Consensus       265 ~is~a~v~l~pG~m~~pH~hp~A~Ei~~V~~G~~~v~vv~~~g~~~---------~~~~~~~~~~r~~~~~l~~Gdv~vv  335 (434)
T 2ea7_A          265 DVFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVGLSDQQQ---------QKQQEESLEVQRYRAELSEDDVFVI  335 (434)
T ss_dssp             TEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEEEECCC---------CTTSCCCEEEEEEEEEECTTCEEEE
T ss_pred             CcceEEEEEcCCeeeccEEcCCCCEEEEEEeeEEEEEEEecCcccc---------ccccccCcceEEEEEEecCCcEEEE
Confidence            9999999999999999999999999999999999999999976421         0112223446789999999999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEEEecCCCCccccccc-cccccccCCHHHHHHHcCCCHHHHHHhhcCCCCceEEcCCCc
Q 040805          453 PAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSR  529 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG-~~svl~~~~~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~~  529 (540)
                      |+|++|+++|+  +++.|++|.++++++.+++||| .++||+++|++||++||+++.++|++|+.+|++++|++++++
T Consensus       336 P~g~~h~~~n~--~~~~~v~f~~~~~~~~~~~laG~~~sv~~~~p~~vla~af~v~~~~v~~l~~~~~e~~~~~~~~~  411 (434)
T 2ea7_A          336 PAAYPVAINAT--SNLNFFAFGINAENNRRNFLAGGKDNVMSEIPTEVLEVSFPASGKKVEKLIKKQSESHFVDAQPE  411 (434)
T ss_dssp             CTTCCEEEEES--SSEEEEEEEETCTTCCEEESSSSTTBGGGGSCHHHHHHHSSSCHHHHHHHHTTCCSCSEEECCCC
T ss_pred             CCCCeEEEEcC--CCeEEEEEECCCCCCCceecccchhhhhhhCCHHHHHHHHCcCHHHHHHHHhcCCccEEECCCch
Confidence            99999999998  4799999999998899999999 799999999999999999999999999999999999998763

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=100.00  E-value=1.8e-75  Score=623.48  Aligned_cols=373  Identities=33%  Similarity=0.593  Sum_probs=331.0

Q ss_pred             CCcccceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEee
Q 040805          146 GDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNV  225 (540)
Q Consensus       146 ~~~f~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l  225 (540)
                      +++|++++++++|+|+++..|+.+++.|+++.+++++.++|+||++++|||+++++|+||++|++++++|++++.++++|
T Consensus        16 ~~~~~~~~~~e~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l   95 (416)
T 1uij_A           16 SNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNL   95 (416)
T ss_dssp             GGSEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEE
T ss_pred             cccccceEEcCCEEEEEEeccCCccccccCcccEEEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCeEEEe
Confidence            77899999999999999998888889999888889999999999999999999999999999999999999988899999


Q ss_pred             CCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHh-c
Q 040805          226 KRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVL-F  304 (540)
Q Consensus       226 ~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~-~  304 (540)
                      ++||||+||+|++||++|+|++++|++|++++++++|+.+.+|+|+|+.++.+||++||++||++||+++.+++++|+ +
T Consensus        96 ~~GDv~~iP~G~~H~~~N~gg~e~l~~l~~~~~~~~pg~~~~f~l~g~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~~~  175 (416)
T 1uij_A           96 HPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFG  175 (416)
T ss_dssp             CTTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEESSCBSSCCCGGGGSCHHHHHHHHTSCHHHHHHHHTC
T ss_pred             cCCCEEEECCCCeEEEEecCCCCCEEEEEEeccCCCCCcceeeeecCCcccchhhhcCCHHHHHHHhCcCHHHHHhhhhc
Confidence            999999999999999999964679999999999999999999999999988899999999999999999999999999 6


Q ss_pred             cC-----CCCcEEEccchhhhccCCCCCCCCcCCCCCCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEE
Q 040805          305 QQ-----DQGAMVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYA  379 (540)
Q Consensus       305 ~q-----~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~  379 (540)
                      .+     .+|+||++++++++.++.+... +.+....+...+|||++++|+|+|.+|+++++++.+||+|++++|+++++
T Consensus       176 ~~~~~~~~~g~Iv~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~l~~~~p~~~~~~G~~~~~~~~~~P~L~~l~is~a~~  254 (416)
T 1uij_A          176 EEEEQRQQEGVIVELSKEQIRQLSRRAKS-SSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSV  254 (416)
T ss_dssp             TTCGGGSBSSSEEECCHHHHHHHTSSCBC-CCGGGGGCSSSCEETTSSCCSEECSSEEEEEECTTTCHHHHHHTEEEEEE
T ss_pred             cccccccCcceEEEeCCcccchhhhcccc-cCCCCCCCcccceeccccCCCccCCCceEEEEChHHCccchhcCcceEEE
Confidence            66     3699999998888877654211 11122234567999999999999999999999999999999999999999


Q ss_pred             EEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEE
Q 040805          380 NISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVV  459 (540)
Q Consensus       380 ~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~  459 (540)
                      +|.||||++|||||+|++|+||++|+|+++||++++..++        +++++....|++++.+|++|||||||+|++||
T Consensus       255 ~l~~g~~~~pH~h~~A~Ei~~V~~G~~~v~~v~~~g~~~~--------~~~~~~~~~~~~~~~~l~~Gdv~vvP~g~~h~  326 (416)
T 1uij_A          255 DINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQK--------QKQEEEPLEVQRYRAELSEDDVFVIPAAYPFV  326 (416)
T ss_dssp             EECTTEEEEEEEESSCEEEEEEEESEEEEEEEEEC--------------------CCEEEEEEEEETTCEEEECTTCCEE
T ss_pred             EEcCCcEecceEcCCCcEEEEEEeeEEEEEEEcCCCcccc--------ccccccccceEEEEEEecCCcEEEECCCCeEE
Confidence            9999999999999999999999999999999999874211        11223345567999999999999999999999


Q ss_pred             EEecCCCCEEEEEEEecCCCCccccccc-cccccccCCHHHHHHHcCCCHHHHHHhhcCCCCceEEcCCCc
Q 040805          460 TVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSR  529 (540)
Q Consensus       460 ~~n~~~e~l~~v~F~~~a~~~~~~~LAG-~~svl~~~~~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~~  529 (540)
                      ++|+  ++|.|++|.++++++.+++||| .++||+++|++||++||+++.++|++|+.+|++++|+++++.
T Consensus       327 ~~n~--~~~~~l~f~~~~~~~~~~~laG~~~sv~~~~p~~vla~af~~~~~~v~~l~~~~~~~~~~~~~~~  395 (416)
T 1uij_A          327 VNAT--SNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQRESYFVDAQPQ  395 (416)
T ss_dssp             EEES--SSEEEEEEEETCTTCCEEESSSSTTBSGGGSCHHHHHHHSSSCHHHHHHHTTSCCSCSEEEC---
T ss_pred             EEcC--CCeEEEEEEcCCCCCcceecccchhhHHHhCCHHHHHHHHCcCHHHHHHHHhcCCccEEECCccc
Confidence            9998  5899999999998999999999 799999999999999999999999999999999999999874

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=100.00  E-value=7e-74  Score=613.93  Aligned_cols=349  Identities=20%  Similarity=0.350  Sum_probs=303.3

Q ss_pred             ccceeecCCceEEEeccCcccccccc--ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEE---
Q 040805          149 ESSRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESY---  223 (540)
Q Consensus       149 f~~~~~~e~G~i~~l~~f~~~~~~L~--Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~---  223 (540)
                      -.++|++++|.|++|   |.+++.|+  |++.+|+   +|+|||+++||||+|++|+||++|+|++|+|.|+|.++|   
T Consensus        24 P~~~i~se~G~~e~~---d~~~~~l~~~gvs~~R~---~i~P~gl~~Ph~h~a~ei~yV~qG~g~~g~v~pgc~etf~~~   97 (465)
T 3qac_A           24 PTNRIQAERGLTEVW---DSNEQEFRCAGVSVIRR---TIEPHGLLLPSFTSAPELIYIEQGNGITGMMIPGCPETYESG   97 (465)
T ss_dssp             CCEEEEETTEEEEEC---CTTSHHHHHHTCEEEEE---EECTTEEEEEEEESSCEEEEEEECEEEEEEECTTCCCCC---
T ss_pred             CccceeCCCcEEEEE---CCCChhhcccceEEEEE---EEcCCcCcccEEcCCCEEEEEEECcEEEEEecCCCCceeecc
Confidence            347899999999997   66678888  8888888   999999999999999999999999999999999987655   


Q ss_pred             -----------------------------------eeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCC-----C
Q 040805          224 -----------------------------------NVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLP-----G  263 (540)
Q Consensus       224 -----------------------------------~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~p-----g  263 (540)
                                                         +|++||||+||+|++||++|+| +++|++|++++++|.+     +
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqk~~~~~~GDvi~iPaG~~hw~~N~G-~~~lv~v~~~d~~n~~nqld~~  176 (465)
T 3qac_A           98 SQQFQGGEDERIREQGSRKFGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNG-DQPLVAVILIDTANHANQLDKN  176 (465)
T ss_dssp             ---------------------------CCCCCCEEEEETTEEEEECTTCEEEEECCS-SSCEEEEEEECTTSTTCCSCSS
T ss_pred             hhccccccccccccccccccccccccccccccceeeecCCCEEEECCCCeEEEEcCC-CCCEEEEEEEcCCCcccccccc
Confidence                                               8999999999999999999998 6799999999998875     6


Q ss_pred             cccccccCCCCCc-------------------ccccccCCHHHHHHhcCCCHHHHHHHhccCC-CCcEEEccchhhhccC
Q 040805          264 QYEAFYGAGGENP-------------------ESFLRAFSWEILESAFKTKRDSLERVLFQQD-QGAMVKASKQQIRALS  323 (540)
Q Consensus       264 ~~~~f~LaG~~~~-------------------~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~-~g~Iv~~~~e~l~~l~  323 (540)
                      .++.|||||++++                   .|||+||++++|++||||+.+++++|+++++ .|.||+++ ++|+.++
T Consensus       177 ~~r~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~ni~sgF~~e~La~Af~v~~~~~~kl~~~q~~rG~Ivrv~-~~l~~~~  255 (465)
T 3qac_A          177 FPTRFYLAGKPQQEHSGEHQFSRESRRGERNTGNIFRGFETRLLAESFGVSEEIAQKLQAEQDDRGNIVRVQ-EGLHVIK  255 (465)
T ss_dssp             SCCEEESSSCCCCSCC--------------CCCCGGGGSCHHHHHHHHTCCHHHHHHHHTTTCCSCSEEEC--CCCC---
T ss_pred             cceeEEecCCCccccccccccccccccccccccchhhcCCHHHHHHHhCCCHHHHHHhhhccccceeEEEec-CcccccC
Confidence            8899999999766                   6999999999999999999999999999887 69999996 6899888


Q ss_pred             CCCCCC---------CcCCCCC-CC-----CceeEcC--CCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCc
Q 040805          324 RSQEGP---------SIWPFAG-ES-----RGTFNLF--GKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAM  386 (540)
Q Consensus       324 ~~~~~~---------s~~~~~~-~~-----~~~fnL~--~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm  386 (540)
                      |+....         +.|+..+ .+     ...+||.  +++|+|++.+|+++.+++.+||+|+++||++++++|.||||
T Consensus       256 p~~~~~~~~~~~~~~~~~~~nglee~~c~~~l~~ni~~p~~~dv~~~~gG~v~~~~~~~fP~L~~lgiS~a~v~l~pGgm  335 (465)
T 3qac_A          256 PPSRAWEEREQGSRGSRYLPNGVEETICSARLAVNVDDPSKADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAM  335 (465)
T ss_dssp             -------------------------CTTTSCCEEETTCTTTCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCE
T ss_pred             CcccchhhhhcccccccccCCCccccccceeccccccccccCCcccCCCceEEEeCHHHCCCccccceeEEEEEecCCcE
Confidence            864210         1122111 11     1234554  56778888999999999999999999999999999999999


Q ss_pred             ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCC
Q 040805          387 AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNN  466 (540)
Q Consensus       387 ~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e  466 (540)
                      ++|||||+|++|+||++|+++|+||++++.                     ++++..|++|||||||+||+|+++++ ++
T Consensus       336 ~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~---------------------~~f~~~l~~GDVfvvP~g~~h~~~ag-~e  393 (465)
T 3qac_A          336 MAPHYNLNAHNIMYCVRGRGRIQIVNDQGQ---------------------SVFDEELSRGQLVVVPQNFAIVKQAF-ED  393 (465)
T ss_dssp             EEEEEESSCCEEEEEEEEEEEEEEECTTSC---------------------EEEEEEEETTCEEEECTTCEEEEEEE-EE
T ss_pred             eeeEECCCCCEEEEEEeCCEEEEEEeCCCc---------------------EEEEEEecCCeEEEECCCcEEEEEcC-CC
Confidence            999999999999999999999999999763                     68899999999999999999999865 77


Q ss_pred             CEEEEEEEecCCCCccccccccccccccCCHHHHHHHcCCCHHHHHHhhcCCCCceEEcCCC
Q 040805          467 NLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPS  528 (540)
Q Consensus       467 ~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~  528 (540)
                      +++|++|.+++ ++...+|||+++||+++|++||++||+++.++|++|+.++++++|++++.
T Consensus       394 ~~~~l~f~~s~-np~~~~LaG~~sv~~~ip~eVla~aF~v~~e~v~~Lk~~~~e~~i~~~~~  454 (465)
T 3qac_A          394 GFEWVSFKTSE-NAMFQSLAGRTSAIRSLPIDVVSNIYQISREEAFGLKFNRPETTLFRSSG  454 (465)
T ss_dssp             EEEEEEEESST-TCCEEESSSSSBHHHHSCHHHHHHHHTCCHHHHHHHHHSCCSCSEECCCC
T ss_pred             CeEEEEEecCC-CCcccccccchhhhhhCCHHHHHHHhCCCHHHHHHHHhccCccEEECCcc
Confidence            89999998776 78999999999999999999999999999999999999999999998875

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=100.00  E-value=1.5e-73  Score=611.58  Aligned_cols=350  Identities=20%  Similarity=0.284  Sum_probs=309.4

Q ss_pred             cceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEE------
Q 040805          150 SSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESY------  223 (540)
Q Consensus       150 ~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~------  223 (540)
                      .++|++++|.+++|   +.++|.|+++ .++++.++|+|||+++||||+|++|+||++|++++|+|.|+|+++|      
T Consensus        18 ~~~~~se~G~~e~w---~~~~~~L~~~-gvs~~r~~i~p~Gl~lPh~~~a~e~~~V~~G~g~~G~v~pgc~et~~~~~~~   93 (466)
T 3kgl_A           18 SHVLKAEAGRIEVW---DHHAPQLRCS-GVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAETFQDSSVF   93 (466)
T ss_dssp             SEEEEETTEEEEEC---CTTSHHHHHH-TEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEEECTTCCCCEEECCSS
T ss_pred             cceeeCCCcEEEEE---CCCChhhccC-CeEEEEEEECCCCEeCCeeCCCCeEEEEEeCeEEEEEecCCCcchhhccccc
Confidence            36899999999997   6677999965 5667777999999999999999999999999999999999988764      


Q ss_pred             ------------------------------------------------------eeCCCcEEEECCCCeEEEEeCCCCcc
Q 040805          224 ------------------------------------------------------NVKRGDIIRVPSGNTFYVTNTDDDEK  249 (540)
Q Consensus       224 ------------------------------------------------------~l~~GDv~~iPaG~~h~~~N~g~~e~  249 (540)
                                                                            +|++||||+||||++||++|+| +++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~l~~GDvi~iPaG~~~~~~N~g-~e~  172 (466)
T 3kgl_A           94 QPGGGSPFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDG-NQP  172 (466)
T ss_dssp             CCCC-----------------------------------------CCEEESCEEEEETTEEEEECTTCEEEEECCS-SSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccceeeccccCCCEEEECCCCcEEEEeCC-CCc
Confidence                                                                  8999999999999999999998 789


Q ss_pred             EEEEEEeecCCCC----CcccccccCCCCC-------------cccccccCCHHHHHHhcCCCHHHHHHHhccCC-CCcE
Q 040805          250 LYIVKFIKSINLP----GQYEAFYGAGGEN-------------PESFLRAFSWEILESAFKTKRDSLERVLFQQD-QGAM  311 (540)
Q Consensus       250 l~~v~i~~~~~~p----g~~~~f~LaG~~~-------------~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~-~g~I  311 (540)
                      |++|++++++|.+    +.++.|||||+++             +.|||++|++++|++||||+.+++++|+++|+ .|+|
T Consensus       173 L~~l~~~d~~n~~nQld~~~~~F~LaG~~~~~~~~~~~~~~~~~~ni~sGF~~e~La~Af~v~~e~~~kL~~~q~~~G~I  252 (466)
T 3kgl_A          173 LVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNI  252 (466)
T ss_dssp             EEEEEEEESSSTTCCSCSSCCEEESSCCBTTCCTTSTTCTTCCBCCGGGGSCHHHHHHHHTSCHHHHHHHTCTTCCSCSE
T ss_pred             EEEEEEEcCCCcccccCCceeeeEecCCCccccccccccccccCCCccccCCHHHHHHHhCCCHHHHHHHhccccCceeE
Confidence            9999999998864    4689999999985             35999999999999999999999999999987 7999


Q ss_pred             EEccchhhhccCCCCCCC--CcCCCCCC-----CCceeEcC--CCCCcccCCCceEEEecCCCCCCCccccceEEEEEEc
Q 040805          312 VKASKQQIRALSRSQEGP--SIWPFAGE-----SRGTFNLF--GKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANIS  382 (540)
Q Consensus       312 v~~~~e~l~~l~~~~~~~--s~~~~~~~-----~~~~fnL~--~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~  382 (540)
                      |+++ ++|+.++|+....  ..+..+.+     ....+||.  +++|+|++.+|+++.+++.+||+|++++|++++++|.
T Consensus       253 v~v~-~~l~~~~p~~~~~~~~~~~~glee~~c~~r~~~Ni~~p~~~d~~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~  331 (466)
T 3kgl_A          253 IRVQ-GPFSVIRPPLRSQRPQEEVNGLEETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIR  331 (466)
T ss_dssp             EECC-SCCCCCCCCC--------------CCSSCCCEEETTCGGGEEEEETTTEEEEEECTTTCTTHHHHTCEEEEEEEE
T ss_pred             EEec-CcccccCCcccccccccccCCccccccceeccccccCcccCCcccCCCceEEEechhhCcccccCceeeEEEEee
Confidence            9998 7899888863110  00111111     12367887  4667899999999999999999999999999999999


Q ss_pred             CCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEe
Q 040805          383 KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVA  462 (540)
Q Consensus       383 pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n  462 (540)
                      ||||++|||||+|++|+||++|+++|+||++++.                     ++++.+|++|||||||+|++|++++
T Consensus       332 pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~---------------------~~f~~~l~~GDV~v~P~G~~H~~~a  390 (466)
T 3kgl_A          332 QNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGD---------------------RVFDGQVSQGQLLSIPQGFSVVKRA  390 (466)
T ss_dssp             TTEEEEEEEESSCCEEEEEEESEEEEEEECTTSC---------------------EEEEEEEETTCEEEECTTCEEEEEE
T ss_pred             cCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCc---------------------EEEEeEecCCcEEEECCCCeEEEEc
Confidence            9999999999999999999999999999999863                     6789999999999999999999965


Q ss_pred             cCCCCEEEEEEEecCCCCccccccccccccccCCHHHHHHHcCCCHHHHHHhhcCCCCceEEcCCC
Q 040805          463 SQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPS  528 (540)
Q Consensus       463 ~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~  528 (540)
                       ++++++||+|.+++ ++...+|||+++||+++|++||++||+++.++|++|+.++++++|+++++
T Consensus       391 -g~e~~~~l~~f~s~-np~~~~LaG~~s~~~~lP~eVla~aF~v~~~~v~~Lk~~q~e~~i~~~~~  454 (466)
T 3kgl_A          391 -TSEQFRWIEFKTNA-NAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVKFNTIETTLTHSSG  454 (466)
T ss_dssp             -CSSEEEEEEEESSS-SCCEEESSSTTCTGGGSCHHHHHHHHTCCHHHHHHHHHSCCCSSEEECC-
T ss_pred             -CCCCEEEEEEECCC-CCccccccchhhhhhhCCHHHHHHHhCcCHHHHHHHHhccCccEEECCCc
Confidence             57889999998777 78899999999999999999999999999999999999999999998864

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=100.00  E-value=2.1e-72  Score=606.61  Aligned_cols=348  Identities=19%  Similarity=0.306  Sum_probs=305.7

Q ss_pred             cceeecCCceEEEeccCcccccccc--ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEE----
Q 040805          150 SSRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESY----  223 (540)
Q Consensus       150 ~~~~~~e~G~i~~l~~f~~~~~~L~--Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~----  223 (540)
                      .++|++++|.+++|   +.+++.|.  ||+.+|+   +|+|||+++|||++|++|+||++|+|++|+|+|++.++|    
T Consensus        21 ~~~~~se~G~~e~~---~~~~~~L~~~gvs~~R~---~i~pggl~lPh~~~A~ei~~V~qG~g~~G~v~p~~~e~f~~~~   94 (496)
T 3ksc_A           21 DNRIESEGGLIETW---NPNNKQFRCAGVALSRA---TLQRNALRRPYYSNAPQEIFIQQGNGYFGMVFPGCPETFEEPQ   94 (496)
T ss_dssp             SEEEEETTEEEEEC---CTTSHHHHHHTCEEEEE---EECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC-----
T ss_pred             ccccCCCCcEEEec---cccchhhccCCceEEEE---EecCCCEeCceEcCCCEEEEEEeCceEEEEEeCCCCccchhhh
Confidence            37899999999997   66778998  8887877   999999999999999999999999999999999876654    


Q ss_pred             ------------------eeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCC----CCcccccccCCCCCc-----
Q 040805          224 ------------------NVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINL----PGQYEAFYGAGGENP-----  276 (540)
Q Consensus       224 ------------------~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~----pg~~~~f~LaG~~~~-----  276 (540)
                                        +|++||||+||+|++||++|+| +++|++|++++++|.    |+.++.|||||++.+     
T Consensus        95 ~~~~~~~~~~~d~~qk~~~l~~GDV~viPaG~~h~~~N~G-~~~lv~v~~~d~~n~~NQld~~~r~F~LaG~~~~~~~~~  173 (496)
T 3ksc_A           95 ESEQGEGRRYRDRHQKVNRFREGDIIAVPTGIVFWMYNDQ-DTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEFLQY  173 (496)
T ss_dssp             ----------CCCCCCEEEECTTEEEEECTTCEEEEEECS-SSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTGGG
T ss_pred             hcccccccccccchheeeccCCCCEEEECCCCcEEEEcCC-CCCEEEEEEeccCcccccCCCceeeeEecCCCccccccc
Confidence                              9999999999999999999998 679999999988774    778999999999654     


Q ss_pred             --------------ccccccCCHHHHHHhcCCCHHHHHHHh---ccCCCCcEEEccchhhhccCCCCCCC----------
Q 040805          277 --------------ESFLRAFSWEILESAFKTKRDSLERVL---FQQDQGAMVKASKQQIRALSRSQEGP----------  329 (540)
Q Consensus       277 --------------~s~l~~f~~evLa~Af~v~~~~v~~l~---~~q~~g~Iv~~~~e~l~~l~~~~~~~----------  329 (540)
                                    .|||++|++++|++||||+.+++++|+   .++..|.||+++. +|+.|+|+.+..          
T Consensus       174 ~~~~~~~~~~~~~~~ni~sgF~~e~La~Af~v~~e~~~kl~~~~~~~~rg~IV~v~~-~l~~~~P~~~~~~~~~~~~~~~  252 (496)
T 3ksc_A          174 QHQQGGKQEQENEGNNIFSGFKRDFLEDAFNVNRHIVDRLQGRNEDEEKGAIVKVKG-GLSIISPPEKQARHQRGSRQEE  252 (496)
T ss_dssp             CC-----------CCSGGGGSCHHHHHHHHTCCHHHHHHHTTTTCCTTTCSEEECSS-CCCCCCCC--------------
T ss_pred             cccccccccccccCCCchhhcCHHHHHHHHCCCHHHHHHHHhhcccccCccEEEecC-cccccCCchhhhchhhcccchh
Confidence                          699999999999999999999999999   3445799999986 888887753110          


Q ss_pred             --C-------------------------cCC----------------------CCCCCC----------ceeEcC--CCC
Q 040805          330 --S-------------------------IWP----------------------FAGESR----------GTFNLF--GKR  348 (540)
Q Consensus       330 --s-------------------------~~~----------------------~~~~~~----------~~fnL~--~~~  348 (540)
                        .                         .|+                      +.++..          ..+||.  +.+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nGlee~~c~~~l~~Ni~~p~~~  332 (496)
T 3ksc_A          253 DEDEEKQPRHQRGSRQEEEEDEDEERQPRHQRRRGEEEEEDKKERGGSQKGKSRRQGDNGLEETVCTAKLRLNIGPSSSP  332 (496)
T ss_dssp             ---------------------------------------------------------------CCSSSCCEEECSTTSCC
T ss_pred             hhhccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCccccccchhhhccccccccC
Confidence              0                         011                      000011          245666  456


Q ss_pred             CcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCC
Q 040805          349 PSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSS  428 (540)
Q Consensus       349 P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~  428 (540)
                      |+|++.+|+++.+++.+||+|+++||++++++|.||||++|||||+|++|+||++|+++|+||++++.            
T Consensus       333 di~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~------------  400 (496)
T 3ksc_A          333 DIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGN------------  400 (496)
T ss_dssp             SEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSC------------
T ss_pred             CcccCCCeeEEEeCHHHCccccccceeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCc------------
Confidence            78999999999999999999999999999999999999999999999999999999999999999763            


Q ss_pred             ccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCCHHHHHHHcCCCH
Q 040805          429 TREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRA  508 (540)
Q Consensus       429 ~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~  508 (540)
                               ++|+.+|++|||||||+|++|+++|+ +++++|++|.+++ ++...+|||+++||++||++||++||+++.
T Consensus       401 ---------~~f~~~l~~GDV~v~P~G~~H~~~a~-~e~~~~l~f~~s~-np~~~~LaG~~sv~~~~p~eVLa~aF~v~~  469 (496)
T 3ksc_A          401 ---------TVFDGELEAGRALTVPQNYAVAAKSL-SDRFSYVAFKTND-RAGIARLAGTSSVINNLPLDVVAATFNLQR  469 (496)
T ss_dssp             ---------EEEEEEEETTCEEEECTTCEEEEEEC-SSEEEEEEEESST-TCCEEESSSTTCTTTTSCHHHHHHHHTCCH
T ss_pred             ---------EEEEEEecCCeEEEECCCCEEEEEeC-CCCEEEEEEECCC-CCccccccchhhhhhhCCHHHHHHHHCcCH
Confidence                     68888999999999999999999887 7889999998776 789999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCceEEcCCC
Q 040805          509 DEVERVFGNQDQDWFFKGPS  528 (540)
Q Consensus       509 e~v~kl~~~q~e~~f~~~~~  528 (540)
                      ++|++|+.++++.+|+|+++
T Consensus       470 ~~v~~Lk~~q~e~~i~~~~~  489 (496)
T 3ksc_A          470 NEARQLKSNNPFKFLVPARE  489 (496)
T ss_dssp             HHHHHHHHSCCCSSEECCCC
T ss_pred             HHHHHHHhcCCccEEeCCCC
Confidence            99999999999999999987

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=100.00  E-value=8.4e-73  Score=597.93  Aligned_cols=359  Identities=29%  Similarity=0.523  Sum_probs=312.0

Q ss_pred             cCCc-ccceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEE
Q 040805          145 EGDE-ESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESY  223 (540)
Q Consensus       145 ~~~~-f~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~  223 (540)
                      ++++ |+++|++++|+|++|++|+.++|.|+++.+++++.++|+|||+++||||+|++|+||++|++++|+|++++.+++
T Consensus        17 ~~~~~~~~~~~~e~G~i~~l~~~~~~~~~l~~~~~~s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~~~   96 (397)
T 2phl_A           17 NSDNSWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREY   96 (397)
T ss_dssp             CGGGTEEEEEEETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEE
T ss_pred             ccchhccceEEcCCEEEEEecccCCCChhhcccccEEEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcEEE
Confidence            6666 999999999999999999998999999888999999999999999999999999999999999999999999999


Q ss_pred             eeCCCcE------EEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHH
Q 040805          224 NVKRGDI------IRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRD  297 (540)
Q Consensus       224 ~l~~GDv------~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~  297 (540)
                      +|++||+      |+||+|++||++|+|++++|++|++++++++| .+.+|+|+|+..+.|||++||++||++||+++.+
T Consensus        97 ~l~~GDv~~~~~~~~iP~G~~h~~~N~g~~~~l~~i~~~~~~~~~-~~~~f~L~G~~~~~s~~~~~~~~vLa~af~v~~~  175 (397)
T 2phl_A           97 FFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNP-QIHEFFLSSTEAQQSYLQEFSKHILEASFNSKFE  175 (397)
T ss_dssp             EEEESSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSSS-SCCEEECCCBTTBCCGGGGSCHHHHHHHHTSCHH
T ss_pred             EECCCCcccccceEEECCCCcEEEEeCCCCCCeEEEEeecCCCCc-cceeeeccCCCchhHHhhcCCHHHHHHHhCCCHH
Confidence            9999999      99999999999999867899999999998887 7889999999888899999999999999999999


Q ss_pred             HHHHHh-ccC--CCCcEEEccchhhhccCCCCCCCCcCCCCCCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccc
Q 040805          298 SLERVL-FQQ--DQGAMVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDI  374 (540)
Q Consensus       298 ~v~~l~-~~q--~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~i  374 (540)
                      ++++|+ +++  .+|+||+++.+++++++.+  +++        +..+.|.+..|+|+|.+|+++++++.+      ++|
T Consensus       176 ~v~~l~~~~~~q~~~~Iv~~~~~~~~~~~~~--~~~--------~~~~~l~~~~p~~~n~~G~~~~v~~~~------l~i  239 (397)
T 2phl_A          176 EINRVLFEEEGQQEGVIVNIDSEQIKELSKH--AKS--------SSRKSLSKQDNTIGNEFGNLTERTDNS------LNV  239 (397)
T ss_dssp             HHHHHHTCSTTCBSSSEEECCTTTHHHHHHH--HHT--------C---------CEEEETTEEEEEEEETT------TTE
T ss_pred             HHHhhhhcccccccCceEEcCcccchhhhcc--CCC--------cccccccccCCcccCCCCeEEEEeecc------CCe
Confidence            999999 553  4799999998887766543  111        123457778899999999999999877      789


Q ss_pred             eEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC
Q 040805          375 TVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA  454 (540)
Q Consensus       375 sv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa  454 (540)
                      ++++++|.||||++|||||+|++|+||++|+|+++||+++++.               .+..+++++.+|++|||||||+
T Consensus       240 s~a~v~l~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~---------------~~~g~~~~~~~l~~GDV~vvP~  304 (397)
T 2phl_A          240 LISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNK---------------ETLEYESYRAELSKDDVFVIPA  304 (397)
T ss_dssp             EEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC-----------------CCSCEEEEEEEEETTCEEEECT
T ss_pred             eEEEEEEcCCcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccc---------------cCCCceEEEEEecCCCEEEECC
Confidence            9999999999999999999999999999999999999996531               0122478999999999999999


Q ss_pred             CCeEEEEecCCCCEEEEEEEecCCCCccccccc-cccccccCC-----HHHHHHHcCCCHHHHHHhhcCCCCceEEcCCC
Q 040805          455 GHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVME-----SEAKELAFNTRADEVERVFGNQDQDWFFKGPS  528 (540)
Q Consensus       455 G~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG-~~svl~~~~-----~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~  528 (540)
                      |++|+++|++  ++.|++|.++++++..++||| .++||+++|     ++||++||+++.+++++|++++++++|+++++
T Consensus       305 G~~h~~~n~~--~l~~l~f~~~s~~~~~~~laG~~~sv~~~~p~~~~~~eVla~af~v~~~~v~~l~~~~~e~~i~~~~~  382 (397)
T 2phl_A          305 AYPVAIKATS--NVNFTGFGINANNNNRNLLAGKTDNVISSIGRALDGKDVLGLTFSGSGDEVMKLINKQSGSYFVDAHH  382 (397)
T ss_dssp             TCCEEEEESS--SEEEEEEEESCTTCCEEESSSSSSBHHHHHHTSTTHHHHHHHHSSSCHHHHHHHHTTCCCCSEEECC-
T ss_pred             CCeEEEEeCC--CeEEEEEECCCCCCcceecccchhhHHhhCCCccchHHHHHHHhCcCHHHHHHHHhcCCccEEeCCCc
Confidence            9999999985  899999999998899999999 789999999     99999999999999999999999999999987


Q ss_pred             chhhhcccc
Q 040805          529 RWHQQQQGR  537 (540)
Q Consensus       529 ~~~~~~~~~  537 (540)
                      +++.+++||
T Consensus       383 ~~~~~~~~~  391 (397)
T 2phl_A          383 HQQEQQKGR  391 (397)
T ss_dssp             ---------
T ss_pred             ccchhcccc
Confidence            422234444

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=100.00  E-value=1.1e-70  Score=591.34  Aligned_cols=347  Identities=19%  Similarity=0.291  Sum_probs=304.6

Q ss_pred             ceeecCCceEEEeccCcccccccc--ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce-------
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE-------  221 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~--Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~-------  221 (540)
                      ++|+|++|.+++|   +.+++.|+  |++.+|+   +|+|||+++||||+|++|+||++|+|++|+|+|+|++       
T Consensus        39 ~~v~se~G~~~~~---~~~~~~l~~~gvs~~r~---~i~pggl~~Ph~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~  112 (459)
T 2e9q_A           39 RRAEAEAGFTEVW---DQDNDEFQCAGVNMIRH---TIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLR  112 (459)
T ss_dssp             EEEEETTEEEEEC---CTTSHHHHHHTEEEEEE---EECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEEECCC
T ss_pred             ceEecCCcEEEec---CCCChhhccCceEEEEE---EEcCCCEecceecCCceEEEEEeeEEEEEEEeCCCcchhccchh
Confidence            6789999999995   77789998  7777776   9999999999999999999999999999999999764       


Q ss_pred             ---------------EEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCC----CCcccccccCCCCCc------
Q 040805          222 ---------------SYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINL----PGQYEAFYGAGGENP------  276 (540)
Q Consensus       222 ---------------~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~----pg~~~~f~LaG~~~~------  276 (540)
                                     +++|++||||+||+|++||++|+| +++|++|++++++|.    |+.+++|||||+..+      
T Consensus       113 ~~~~~~~~~~d~~q~~~~l~~GDv~~iPaG~~H~~~N~g-~~~l~~l~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~  191 (459)
T 2e9q_A          113 RSQSAGSAFKDQHQKIRPFREGDLLVVPAGVSHWMYNRG-QSDLVLIVFADTRNVANQIDPYLRKFYLAGRPEQVERGVE  191 (459)
T ss_dssp             -------CCCEEECCCEEEETTEEEEECTTCCEEEEECS-SSCEEEEEEEESSSTTCCSCSSCCEEESSSCCCCCSSTTC
T ss_pred             hccccccccccccceeEEecCCCEEEECCCCCEEEEeCC-CCCEEEEEEecCCCcccccCcccceeeccCCccccchhhh
Confidence                           458999999999999999999998 679999999998873    456899999998754      


Q ss_pred             ---------------ccccccCCHHHHHHhcCCCHHHHHHHhccCC-CCcEEEccchhhhccCCCCCC-C---C------
Q 040805          277 ---------------ESFLRAFSWEILESAFKTKRDSLERVLFQQD-QGAMVKASKQQIRALSRSQEG-P---S------  330 (540)
Q Consensus       277 ---------------~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~-~g~Iv~~~~e~l~~l~~~~~~-~---s------  330 (540)
                                     .+||++||++||++||+|+.+++++|++.++ .|+||+++ ++|+.++|.... .   .      
T Consensus       192 ~~~~~~~~~~~~~~~~nif~gf~~evLa~aF~v~~~~v~kL~~~~~~~G~Iv~~~-~~l~~~~P~~~~~e~~~~~~~~~~  270 (459)
T 2e9q_A          192 EWERSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIVQVD-EDFEVLLPEKDEEERSRGRYIESE  270 (459)
T ss_dssp             C------------CCCCTTTTSCHHHHHHHHTCCHHHHHHHHTTTCCSTTEEECC-SSCCTTTTC---------------
T ss_pred             ccccccccccccccccchhhcCCHHHHHhhcCCCHHHHHhhhhcccCCccEEEeC-CcccccCCccchhhhccccccccc
Confidence                           3999999999999999999999999999887 69999998 467777664211 0   0      


Q ss_pred             -cCCCC-CCCCceeEcC------CCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEE
Q 040805          331 -IWPFA-GESRGTFNLF------GKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVV  402 (540)
Q Consensus       331 -~~~~~-~~~~~~fnL~------~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~  402 (540)
                       .|+.+ .+...+|+|.      ++.|+|++.+|+++.+++.+||+|++++|++++++|.||||++|||||+|++|+||+
T Consensus       271 ~~~~~g~~e~~~~~~l~~n~~~~~~~~~~~~~gG~v~~~~~~~fP~L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~  350 (459)
T 2e9q_A          271 SESENGLEETICTLRLKQNIGRSERADVFNPRGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYAT  350 (459)
T ss_dssp             ---------CGGGSCCEEECSTTSCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEE
T ss_pred             ccccCCccccccceeeeecccccccCCcccCCCeeEEEeccccCccccccccceEEEEeeCCcCccceECCCCCEEEEEE
Confidence             11111 1222355554      677889999999999999999999999999999999999999999999999999999


Q ss_pred             eceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCcc
Q 040805          403 AGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIR  482 (540)
Q Consensus       403 ~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~  482 (540)
                      +|+++|+||++++.                     ++++.+|++|||||||+|++|++.|+ +++++||+|.+++ ++..
T Consensus       351 ~G~~~v~vv~~~g~---------------------~~~~~~l~~GDv~v~P~G~~H~~~ng-~~~~~~l~~~~s~-~~~~  407 (459)
T 2e9q_A          351 RGNARVQVVDNFGQ---------------------SVFDGEVREGQVLMIPQNFVVIKRAS-DRGFEWIAFKTND-NAIT  407 (459)
T ss_dssp             EEEEEEEEECTTSC---------------------EEEEEEEETTCEEEECTTCEEEEEEE-EEEEEEEEEESSS-SCCE
T ss_pred             eeEEEEEEEeCCCC---------------------EEEeeEEeCCcEEEECCCCEEEEEeC-CCCeEEEEEecCC-CCcc
Confidence            99999999999763                     68888999999999999999999994 7889999998887 7899


Q ss_pred             ccccccccccccCCHHHHHHHcCCCHHHHHHhhcCCCCceEEcCCC
Q 040805          483 FPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPS  528 (540)
Q Consensus       483 ~~LAG~~svl~~~~~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~  528 (540)
                      .+|||+++||+++|++||++||+++.+++++|+.++++.+||++++
T Consensus       408 ~~laG~~s~~~~~p~~Vla~af~v~~~~v~~l~~~~~e~~i~~~~~  453 (459)
T 2e9q_A          408 NLLAGRVSQMRMLPLGVLSNMYRISREEAQRLKYGQQEMRVLSPGR  453 (459)
T ss_dssp             EESSSSSSHHHHSCHHHHHHHHTCCHHHHHHHHHSCCSCSEECSCC
T ss_pred             eeecchhHHHHhCCHHHHHHHHCcCHHHHHHHHhcCCccEEeCCCc
Confidence            9999999999999999999999999999999999999999999875

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=100.00  E-value=2e-70  Score=590.44  Aligned_cols=347  Identities=16%  Similarity=0.300  Sum_probs=306.5

Q ss_pred             ceeecCCceEEEeccCcccccccc--ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceE------
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRES------  222 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~--Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~------  222 (540)
                      .+|++++|.+++|   +.++|.|.  ||+.+|+   +|.|+|+++||||+|++|+||++|++++|+|.|+|+++      
T Consensus        24 ~~i~se~G~~e~w---~~~~p~l~~~Gvs~~R~---~i~p~Gl~lPh~~~a~el~yV~qG~g~~G~v~Pgcpet~~~~~~   97 (531)
T 3fz3_A           24 NRIQAEAGQIETW---NFNQGDFQCAGVAASRI---TIQRNGLHLPSYSNAPQLIYIVQGRGVLGAVFSGCPETFEESQQ   97 (531)
T ss_dssp             EEEEETTEEEEEC---CTTSHHHHHHTEEEEEE---EECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEECCCC
T ss_pred             hhcccCCceEEEe---CCCChhhccCcceEEEE---EecCCCEeCCccCCCCeEEEEEECcEEEEEEcCCCccccccccc
Confidence            7899999999997   66789999  8888888   99999999999999999999999999999999997752      


Q ss_pred             ----------------------------------------------------------------------------EeeC
Q 040805          223 ----------------------------------------------------------------------------YNVK  226 (540)
Q Consensus       223 ----------------------------------------------------------------------------~~l~  226 (540)
                                                                                                  ++|+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~vr  177 (531)
T 3fz3_A           98 SSQQGRQQEQEQERQQQQQGEQGRQQGQQEQQQERQGRQQGRQQQEEGRQQEQQQGQQGRPQQQQQFRQLDRHQKTRRIR  177 (531)
T ss_dssp             -------------------------------------------------------------------CCSCEESCCEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccchhccccccccccccccccccccccccccccceeeeccc
Confidence                                                                                        4789


Q ss_pred             CCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCC----CCcccccccCCCCCc--------------------------
Q 040805          227 RGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINL----PGQYEAFYGAGGENP--------------------------  276 (540)
Q Consensus       227 ~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~----pg~~~~f~LaG~~~~--------------------------  276 (540)
                      +||||+||+|++||++|+| +++|++|+++|++|.    |+.++.|||||++.+                          
T Consensus       178 ~GDviaiPaG~~~w~yN~G-~~~l~iv~~~Dt~n~~NQld~~~r~F~LAGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (531)
T 3fz3_A          178 EGDVVAIPAGVAYWSYNDG-DQELVAVNLFHVSSDHNQLDQNPRKFYLAGNPENEFNQQGQSQPRQQGEQGRPGQHQQPF  256 (531)
T ss_dssp             TTEEEEECTTCCEEEECCS-SSCEEEEEEEETTCTTCCSCSSCCEEESSSCCCCTTCC----------------------
T ss_pred             CCcEEEECCCCeEEEEeCC-CceEEEEEEEccccccccCCCccceeEEcCCCcccccccccccccccccccccccccccc
Confidence            9999999999999999988 579999999999875    788999999999543                          


Q ss_pred             ------------ccccccCCHHHHHHhcCCCHHHHHHHhccCC-CCcEEEccchhhhccCCCCCC---C------CcC--
Q 040805          277 ------------ESFLRAFSWEILESAFKTKRDSLERVLFQQD-QGAMVKASKQQIRALSRSQEG---P------SIW--  332 (540)
Q Consensus       277 ------------~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~-~g~Iv~~~~e~l~~l~~~~~~---~------s~~--  332 (540)
                                  .|||+||++++|++||||+.+++++|++.++ .|.||+|+ ++|+.++|....   .      ..+  
T Consensus       257 ~~~~~~~~~~~~~nifsGFs~e~La~A~~v~~~~a~kLq~~~~~rg~IVrv~-~~l~~~~P~~~~~~~~~~~~~~~~~~~  335 (531)
T 3fz3_A          257 GRPRQQEQQGNGNNVFSGFNTQLLAQALNVNEETARNLQGQNDNRNQIIQVR-GNLDFVQPPRGRQEREHEERQQEQLQQ  335 (531)
T ss_dssp             ----------CCSSGGGGSCHHHHHHHHTSCHHHHHHHHTSSCCSCSEEECS-SSCCCSCCC------------------
T ss_pred             cccchhhhcccCCCeeecCCHHHHHHHHCCCHHHHHHHhcccccCceEEEec-CCCcccCCchhhhhhhhcccccccccc
Confidence                        4899999999999999999999999998887 69999998 689988876310   0      000  


Q ss_pred             ----------CCCCC-----CCceeEcC--CCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCC
Q 040805          333 ----------PFAGE-----SRGTFNLF--GKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRS  395 (540)
Q Consensus       333 ----------~~~~~-----~~~~fnL~--~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A  395 (540)
                                .++-.     ...+|||.  +..|+|++.+|+++.+++.+||+|++|+|++++++|.||||+.|||||+|
T Consensus       336 ~~~~~~~~~~~nGleet~c~~rl~~Ni~~ps~~d~~n~~GG~v~~a~~~~fP~L~~LgiS~a~v~L~pGgm~~PHwHp~A  415 (531)
T 3fz3_A          336 ERQQQGEQLMANGLEETFCSLRLKENIGNPERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNA  415 (531)
T ss_dssp             ------------CGGGTGGGCCCEEECCCGGGCSEEETTTEEEEEESTTTCTHHHHHTCEEEEEEECTTCEEEEEEESSC
T ss_pred             cccccccccCCCCcccccccceeeeccCCcccCCcccCCCeEEEEeccccCCccccCceeEEEEEeecCccccceEcCCC
Confidence                      01111     12378888  56788989999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEe
Q 040805          396 TKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEI  475 (540)
Q Consensus       396 ~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~  475 (540)
                      ++|+||++|+++|+||++++.                     ++++..|++|||||||+|++|+++++ +++++|++|++
T Consensus       416 ~Ei~yVl~G~~rv~~V~~~G~---------------------~v~~~~L~~GDV~v~P~G~~H~~~ag-~e~l~flaF~s  473 (531)
T 3fz3_A          416 HSVVYVIRGNARVQVVNENGD---------------------AILDQEVQQGQLFIVPQNHGVIQQAG-NQGFEYFAFKT  473 (531)
T ss_dssp             CEEEEEEEEEEEEEEECTTSC---------------------EEEEEEEETTCEEEECTTCEEEEEEE-EEEEEEEEEES
T ss_pred             CEEEEEEeCcEEEEEEeCCCc---------------------EEEEEEecCCeEEEECCCCeEEEecC-CCCEEEEEEec
Confidence            999999999999999999763                     67889999999999999999998876 78899999987


Q ss_pred             cCCCCccccccccccccccCCHHHHHHHcCCCHHHHHHhhcCCCCceEEcCCC
Q 040805          476 NAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPS  528 (540)
Q Consensus       476 ~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~  528 (540)
                      +. ++...+|||+++||++||++||++||+|+.++|++|+.++++++||.+|.
T Consensus       474 s~-np~~~~LaG~~svf~~lP~eVLa~aF~v~~e~v~kLk~~~~es~i~~pp~  525 (531)
T 3fz3_A          474 EE-NAFINTLAGRTSFLRALPDEVLANAYQISREQARQLKYNRQETIALSSSQ  525 (531)
T ss_dssp             ST-TCCEEESSSTTCHHHHSCHHHHHHHHTCCHHHHHHHHHSCCCSSEECC--
T ss_pred             CC-CCcceeccchhHHHHhCCHHHHHHHhCcCHHHHHHHHhcCCCceEECCCC
Confidence            64 78899999999999999999999999999999999999999999998876

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=100.00  E-value=3e-67  Score=567.29  Aligned_cols=348  Identities=22%  Similarity=0.355  Sum_probs=302.2

Q ss_pred             cceeecCCceEEEeccCcccccccc--ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce------
Q 040805          150 SSRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE------  221 (540)
Q Consensus       150 ~~~~~~e~G~i~~l~~f~~~~~~L~--Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~------  221 (540)
                      .++|+|++|.|++|   +.+++.|+  |++.+|+   +|+|||+++||||+|++|+||++|+|++|+|+|+|++      
T Consensus        23 ~~~v~se~G~~e~~---~~~~~~l~~~gvs~~r~---~l~Pggl~~Ph~~~a~ei~yV~~G~g~~g~v~pg~~et~~~~~   96 (476)
T 1fxz_A           23 DNRIESEGGLIETW---NPNNKPFQCAGVALSRC---TLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQ   96 (476)
T ss_dssp             SCEEEETTEEEEEC---CTTSHHHHHHTCEEEEE---EECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC-----
T ss_pred             ceEEecCCceEEee---CCCChhhccCceEEEEE---EEcCCCEecceecCCceEEEEEecEEEEEEEcCCCcchhhccc
Confidence            36889999999995   77889998  7877777   9999999999999999999999999999999999763      


Q ss_pred             -----------------EEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCC----CCcccccccCCCCCc----
Q 040805          222 -----------------SYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINL----PGQYEAFYGAGGENP----  276 (540)
Q Consensus       222 -----------------~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~----pg~~~~f~LaG~~~~----  276 (540)
                                       +++|++||||+||+|++||++|+| +++|++|++++++|.    |+.+++|||||+..+    
T Consensus        97 ~~~~~~~~~~~~d~~qk~~~l~~GDvi~iPaG~~h~~~N~G-~~~l~~i~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~  175 (476)
T 1fxz_A           97 QPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNE-DTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLK  175 (476)
T ss_dssp             -------------CCCCEEEECTTEEEEECTTCEEEEEECS-SSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTHH
T ss_pred             cccccccccccccccceEEEEeCCCEEEECCCCcEEEEeCC-CCCEEEEEEecCCCcccccCCccceeeccCCccccccc
Confidence                             579999999999999999999998 679999999987774    457899999998653    


Q ss_pred             -----------------------ccccccCCHHHHHHhcCCCHHHHHHHhccCC---CCcEEEccchhhhccCCCCCCCC
Q 040805          277 -----------------------ESFLRAFSWEILESAFKTKRDSLERVLFQQD---QGAMVKASKQQIRALSRSQEGPS  330 (540)
Q Consensus       277 -----------------------~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~---~g~Iv~~~~e~l~~l~~~~~~~s  330 (540)
                                             .|||++||++||++||+|+.+++++|++.++   .|+||+++. +|+.++|......
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~if~gf~~~vLa~af~v~~~~~~kl~~~~~~~~~g~Iv~v~~-~l~~~~P~~~~~e  254 (476)
T 1fxz_A          176 YQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKG-GLSVIKPPTDEQQ  254 (476)
T ss_dssp             HHC-------------------CCCGGGGSCHHHHHHHHTCCHHHHHHHSCC-----CCSEEECSS-CCCCCCC------
T ss_pred             cccccccccccccccccccccccchhhhcCCHHHHHhhhCCCHHHHHhhhccccccccccEEEeCC-cccccCCccchhh
Confidence                                   4899999999999999999999999999887   799999974 6776666421000


Q ss_pred             cC---------------------------------CCCC-CCCceeEcC------CCCCcccCCCceEEEecCCCCCCCc
Q 040805          331 IW---------------------------------PFAG-ESRGTFNLF------GKRPSHSNNFGELFEADSNDFRPLE  370 (540)
Q Consensus       331 ~~---------------------------------~~~~-~~~~~fnL~------~~~P~~~n~~G~~~~~~~~~~p~L~  370 (540)
                      .|                                 ..+. +...+|+|.      ++.|+|++.+|+++++++.+||+|+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng~~e~~~~~~l~~ni~~~~~~~~~~~~gG~v~~~~~~~~P~L~  334 (476)
T 1fxz_A          255 QRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALS  334 (476)
T ss_dssp             ------------------------------------------CTTCCCEEECSSSSCCSEEETTTEEEEEECTTTSGGGT
T ss_pred             hccccchhhhhcccccccccccccccccccccccccCCccccccceeeeccccccccCCcccCCCeEEEEeccccCcccc
Confidence            00                                 0110 111355554      5667899999999999999999999


Q ss_pred             cccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEE
Q 040805          371 DLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAY  450 (540)
Q Consensus       371 ~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~  450 (540)
                      +++|++++++|.||||+.|||||+|++|+||++|+++++|+++++.                     ++++..|++|||+
T Consensus       335 ~l~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~---------------------~~~~~~l~~GDv~  393 (476)
T 1fxz_A          335 WLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGE---------------------RVFDGELQEGRVL  393 (476)
T ss_dssp             TTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSC---------------------EEEEEEEETTCEE
T ss_pred             cCcceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCC---------------------EEeeeEEcCCCEE
Confidence            9999999999999999999999999999999999999999998763                     5777889999999


Q ss_pred             EECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCCHHHHHHHcCCCHHHHHHhhcCCCCceEEcCCC
Q 040805          451 IVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPS  528 (540)
Q Consensus       451 vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~  528 (540)
                      |||+|++|++.| ++++++|++|.+++ ++...+|||+++||+++|++||++||+++.+++++|+.++++.+|||++.
T Consensus       394 viP~G~~H~~~n-g~~~l~~l~f~~s~-~p~~~~laG~~s~~~~~p~~Vla~af~~~~~~v~~l~~~~~e~~i~~p~~  469 (476)
T 1fxz_A          394 IVPQNFVVAARS-QSDNFEYVSFKTND-TPMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNNPFKFLVPPQE  469 (476)
T ss_dssp             EECTTCEEEEEE-CSTTEEEEEEESSS-SCCEEESSSTTCTGGGSCHHHHHHHHTCCHHHHHHHHHSCCCSSEECCCC
T ss_pred             EECCCCeEEEEe-CCCCEEEEEEECCC-CCceeEccchhHHHHhCCHHHHHHHhCcCHHHHHHHHhhCCCcEEeCCcc
Confidence            999999999999 68899999998776 78899999999999999999999999999999999999999999999876

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=100.00  E-value=5.9e-67  Score=566.44  Aligned_cols=348  Identities=20%  Similarity=0.296  Sum_probs=300.1

Q ss_pred             cceeecCCceEEEeccCcccccccc--ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCce------
Q 040805          150 SSRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRE------  221 (540)
Q Consensus       150 ~~~~~~e~G~i~~l~~f~~~~~~L~--Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~------  221 (540)
                      ..+|++++|.+++|   +.++|.|+  |++.+|+   +|+|||+++||||++++|+||++|+|++|+|.|+|++      
T Consensus        23 ~~~~~se~G~~e~~---~~~~~~l~~~gvs~~r~---~i~p~gl~lPh~~~a~~~~yV~~G~g~~g~v~pg~~et~~~~~   96 (510)
T 3c3v_A           23 DNRIESEGGYIETW---NPNNQEFECAGVALSRL---VLRRNALRRPFYSNAPQEIFIQQGRGYFGLIFPGCPSTYEEPA   96 (510)
T ss_dssp             CEEEEETTEEEEEC---CTTSHHHHHHTCEEEEE---EECTTEEEEEEECSSCEEEEEEECCEEEEEECTTCCCCEEEEC
T ss_pred             hhhhccCCceEEEe---CCCCcccccCcEEEEEE---EECCCCCccceecCCCeEEEEEeCEEEEEEEeCCCcccccccc
Confidence            36999999999996   77778998  6666665   9999999999999999999999999999999998742      


Q ss_pred             ------------------------------EEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCC----cccc
Q 040805          222 ------------------------------SYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPG----QYEA  267 (540)
Q Consensus       222 ------------------------------~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg----~~~~  267 (540)
                                                    .++|++||||+||+|++||++|+| +++|++|++++++|.+.    .+++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~qkv~~v~~GDvi~iPaG~~hw~~N~g-~~~l~~v~~~d~~n~~nqld~~~r~  175 (510)
T 3c3v_A           97 QQGRRYQSQRPPRRLQEEDQSQQQQDSHQKVHRFNEGDLIAVPTGVAFWLYNDH-DTDVVAVSLTDTNNNDNQLDQFPRR  175 (510)
T ss_dssp             CC--------------------CEEEEESCCEEECTTEEEEECTTCEEEEEECS-SSCEEEEEEECTTBTTCCSCSCCCC
T ss_pred             ccccccccccccccccccccccccccccceEEEecCCCEEEECCCCCEEEEeCC-CCCEEEEEEeCCCCcccccccccce
Confidence                                          368999999999999999999998 67999999999888644    3789


Q ss_pred             cccCCCCC-------------------------------------------------------cccccccCCHHHHHHhc
Q 040805          268 FYGAGGEN-------------------------------------------------------PESFLRAFSWEILESAF  292 (540)
Q Consensus       268 f~LaG~~~-------------------------------------------------------~~s~l~~f~~evLa~Af  292 (540)
                      |||||++.                                                       +.|||+||+++||++||
T Consensus       176 F~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~sgF~~~~La~af  255 (510)
T 3c3v_A          176 FNLAGNHEQEFLRYQQQSRQSRRRSLPYSPYSPQSQPRQEEREFSPRGQHSRRERAGQEEEHEGGNIFSGFTPEFLAQAF  255 (510)
T ss_dssp             EESSCCCCCTTGGGCC------------------------------------------------CCTGGGSCHHHHHHHH
T ss_pred             eEecCCcccccchhhhccccccccccccccccccccccccccccccccccccccccccccccccccceecCCHHHHHHHh
Confidence            99999653                                                       24899999999999999


Q ss_pred             CCC-HHHHHHHhccCC---CCcEEEccchhhhccCCCCC-------CC-----C----------cCC---CCC-CCCcee
Q 040805          293 KTK-RDSLERVLFQQD---QGAMVKASKQQIRALSRSQE-------GP-----S----------IWP---FAG-ESRGTF  342 (540)
Q Consensus       293 ~v~-~~~v~~l~~~q~---~g~Iv~~~~e~l~~l~~~~~-------~~-----s----------~~~---~~~-~~~~~f  342 (540)
                      ||+ .+++++|++.++   .|+||+++ ++|+.++|...       ..     .          .|.   .+. ....+|
T Consensus       256 ~v~~~~~~~~l~~~~~~~~~g~Iv~v~-~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng~~e~~c~~  334 (510)
T 3c3v_A          256 QVDDRQIVQNLRGENESEEQGAIVTVR-GGLRILSPDRKRGADEEEEYDEDEYEYDEEDRRRGRGSRGSGNGIEETICTA  334 (510)
T ss_dssp             TCCCHHHHHHHTTTTCCTTSCSEEECT-TCCCCCCC-----------------------------------CTTTTGGGC
T ss_pred             CCCHHHHHHHhhccccccccccEEEeC-CcccccCCchhccccchhhhhhhhccccccccccccccccccCCccccccce
Confidence            999 999999998887   69999998 57777766421       00     0          011   011 112355


Q ss_pred             EcC------CCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCC
Q 040805          343 NLF------GKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVS  416 (540)
Q Consensus       343 nL~------~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~  416 (540)
                      +|.      +..|+|++.+|+++++++.+||+|++++|++++++|.||||+.|||||+|++|+||++|+++++|+++++.
T Consensus       335 ~l~~ni~~~~~~~~~~~~gG~v~~~~~~~fP~L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~  414 (510)
T 3c3v_A          335 TVKKNIGRNRSPDIYNPQAGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGN  414 (510)
T ss_dssp             CCEEECSSCSCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSC
T ss_pred             eeeeccCccccCCcccCCCeEEEEeccccCcccccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCC
Confidence            554      56678899999999999999999999999999999999999999999999999999999999999999763


Q ss_pred             CCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCC
Q 040805          417 RSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVME  496 (540)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~  496 (540)
                                           ++++..|++|||+|||+|++|++.| +++++.|++|.+++ ++...+|||+++||+++|
T Consensus       415 ---------------------~~~~~~l~~GDv~viP~G~~H~~~N-g~e~l~~l~f~~s~-~p~~~~LaG~~svf~~lp  471 (510)
T 3c3v_A          415 ---------------------RVYDEELQEGHVLVVPQNFAVAGKS-QSDNFEYVAFKTDS-RPSIANLAGENSVIDNLP  471 (510)
T ss_dssp             ---------------------EEEEEEEETTCEEEECTTCEEEEEE-CSSEEEEEEEESSS-SCCEEESSSTTSTTTTSC
T ss_pred             ---------------------EEEeEEEcCCcEEEECCCCeEEEEe-CCCCEEEEEEECCC-CcceeecccHhHHHHhCC
Confidence                                 6777889999999999999999999 68899999998776 788999999999999999


Q ss_pred             HHHHHHHcCCCHHHHHHhhcCCCCceEEcCCC
Q 040805          497 SEAKELAFNTRADEVERVFGNQDQDWFFKGPS  528 (540)
Q Consensus       497 ~evla~AF~vs~e~v~kl~~~q~e~~f~~~~~  528 (540)
                      ++||++||+++.++|++|+.++++.+|||+++
T Consensus       472 ~eVla~aF~v~~e~v~~L~~~~~e~~i~~p~~  503 (510)
T 3c3v_A          472 EEVVANSYGLPREQARQLKNNNPFKFFVPPSQ  503 (510)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHSCCCSSEECC--
T ss_pred             HHHHHHHHCcCHHHHHHHHhhCCCcEEECCcc
Confidence            99999999999999999999999999999875

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=100.00  E-value=3.7e-41  Score=351.33  Aligned_cols=323  Identities=15%  Similarity=0.117  Sum_probs=257.6

Q ss_pred             eecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEecCC-ceEEeeCCCcE
Q 040805          153 VTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIRENN-RESYNVKRGDI  230 (540)
Q Consensus       153 ~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~-~~~~~l~~GDv  230 (540)
                      +.+++|.++.+..     +.|+....+.++.+++.||++..||||. ++|++||++|+++++++++++ ..++.|++||+
T Consensus        31 ~~~~~G~~~~~~~-----~~~p~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~  105 (361)
T 2vqa_A           31 VLYDGGTTKQVGT-----YNFPVSKGMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGL  105 (361)
T ss_dssp             EEETTEEEEEEST-----TTCTTCCSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEE
T ss_pred             eecCCceEEEeCh-----hhCccccceeeEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCE
Confidence            4579999999842     3455444456666699999999999997 999999999999999999875 36799999999


Q ss_pred             EEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCc
Q 040805          231 IRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGA  310 (540)
Q Consensus       231 ~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~  310 (540)
                      ++||+|++||+.|.+ +++++++.++++.+. ..+..|.+      .+||++||.++|+++|+++.+.+++|...+.  .
T Consensus       106 ~~ip~g~~H~~~n~~-~~~~~~l~v~~~~~~-~~~~~~~~------~~~~~~~p~~vLa~~~~v~~~~~~~l~~~~~--~  175 (361)
T 2vqa_A          106 WYFPRGWGHSIEGIG-PDTAKFLLVFNDGTF-SEGATFSV------TDWLSHTPIAWVEENLGWTAAQVAQLPKKQV--Y  175 (361)
T ss_dssp             EEECTTCEEEEEECS-SSCEEEEEEESSTTC-CTTSSEEH------HHHHHTSCHHHHHHHHTCCHHHHTTSCSSCC--C
T ss_pred             EEECCCCeEEEEeCC-CCCEEEEEEECCCCc-cccceecH------hHHHHhCCHHHHHHHhCcCHHHHHhccccCc--e
Confidence            999999999999997 468999988865542 22333443      4899999999999999999999999987653  5


Q ss_pred             EEEc--cchhhhccCCCCCCCCcCCCCCCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCccc
Q 040805          311 MVKA--SKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAA  388 (540)
Q Consensus       311 Iv~~--~~e~l~~l~~~~~~~s~~~~~~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~  388 (540)
                      |+..  .+..+. +...  . + ........+.|++...++.+.+.+|.++.+.+.++|.++  ++++..++|.||++..
T Consensus       176 i~~~~~~p~~~~-~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~--~~~~~~~~l~pg~~~~  248 (361)
T 2vqa_A          176 ISSYGPASGPLA-SATP--Q-G-QTAKIEVPHTHNLLGQQPLVSLGGNELRLASAKEFPGSF--NMTGALIHLEPGAMRQ  248 (361)
T ss_dssp             EECSSCCCCCGG-GCCC--S-S-CCCBCCSCCEEECTTSCCSEEETTEEEEEECTTTCTTST--TCEEEEEEECTTCEEE
T ss_pred             EEeCCCCCCccc-cccc--c-C-cCCCCCcceEeccccCCCcccCCCceEEEEehhhCcCcc--cceEEEEEECCCcccc
Confidence            6621  011111 1000  0 0 011123345678888878777889999999999999887  4889999999999999


Q ss_pred             ccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCE
Q 040805          389 PFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNL  468 (540)
Q Consensus       389 PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l  468 (540)
                      ||||+++.+++||++|+++++++++++                      +.....|++||+++||+|.+|++.|.+++++
T Consensus       249 ~H~H~~~~E~~~Vl~G~~~~~v~~~~g----------------------~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~  306 (361)
T 2vqa_A          249 LHWHPNADEWQYVLDGEMDLTVFASEG----------------------KASVSRLQQGDVGYVPKGYGHAIRNSSQKPL  306 (361)
T ss_dssp             EEECSSCCEEEEEEESCEEEEEECSTT----------------------CEEEEEECTTCEEEECTTCEEEEECCSSSCE
T ss_pred             cccCCCCCEEEEEEeCEEEEEEEcCCC----------------------cEEEEEECCCCEEEECCCCeEEeEECCCCCE
Confidence            999999999999999999999999865                      2334689999999999999999999888899


Q ss_pred             EEEEEEecCCCCccccccccccccccCCHHHHHHHcCCCHHHHHHhhcCCCCceEE
Q 040805          469 EVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFF  524 (540)
Q Consensus       469 ~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e~v~kl~~~q~e~~f~  524 (540)
                      .++++.+.. ++....+|   ++++++|++||++||+++.+++++|+ ++++.+|+
T Consensus       307 ~~l~~~~~~-~~~~~~~~---~~~~~~~~~vl~~~f~~~~~~~~~l~-~~~~~~~~  357 (361)
T 2vqa_A          307 DIVVVFNDG-DYQSIDLS---TWLASNPSSVLGNTFQISPELTKKLP-VQDTIFSL  357 (361)
T ss_dssp             EEEEEESSS-SCCCEEHH---HHHHTSCHHHHHHHHTCCHHHHTTSC-CSCCSEEC
T ss_pred             EEEEEECCC-CcceeeHH---HHhhhCCHHHHHHHHCcCHHHHHhhh-ccCCcccc
Confidence            999886554 55666665   58999999999999999999999997 45566665

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=100.00  E-value=6.8e-35  Score=306.95  Aligned_cols=316  Identities=12%  Similarity=0.125  Sum_probs=245.8

Q ss_pred             eecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCc-eEEeeCCCcEE
Q 040805          153 VTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNR-ESYNVKRGDII  231 (540)
Q Consensus       153 ~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~-~~~~l~~GDv~  231 (540)
                      ..+++|.++.+.+     ..|++...+.++.+.+.||+...||||.+.+++||++|++++++++.++. .++.|++||++
T Consensus        58 ~~~~~G~~~~~~~-----~~lp~~~~~~~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~  132 (385)
T 1j58_A           58 RLEKGGYAREVTV-----RELPISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLW  132 (385)
T ss_dssp             EEETTEEEEEECT-----TTCTTCSSCEEEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEE
T ss_pred             cccCCcEEEEecc-----ccCcccCceEEEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEE
Confidence            4579999999843     34554445667777999999999999999999999999999999986443 46799999999


Q ss_pred             EECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcE
Q 040805          232 RVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAM  311 (540)
Q Consensus       232 ~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~I  311 (540)
                      +||+|++|++.|.+  ++++++.++++.. ...+..|.+      .+||+++|.++|+++|+++.+++.+|...+  ..|
T Consensus       133 ~ip~g~~H~~~n~~--~~~~~~~v~~~~~-~~~~~~~~~------~~~~~~~p~evla~~~~vs~~~~~~l~~~~--~~i  201 (385)
T 1j58_A          133 YFPSGLPHSIQALE--EGAEFLLVFDDGS-FSENSTFQL------TDWLAHTPKEVIAANFGVTKEEISNLPGKE--KYI  201 (385)
T ss_dssp             EECTTCCEEEEEEE--EEEEEEEEESCTT-CCGGGEEEH------HHHHHTSCHHHHHHHHTCCTGGGTTSCSSC--CSE
T ss_pred             EECCCCeEEEEECC--CCEEEEEEECCCC-ccccchhhh------hhhhhcccHHHHHHHhCCCHHHHHhccccc--ceE
Confidence            99999999999986  3588888885544 333444554      389999999999999999999999987754  356


Q ss_pred             EEccc-hhhhccCCCCCCCCcCCCCCCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCccccc
Q 040805          312 VKASK-QQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPF  390 (540)
Q Consensus       312 v~~~~-e~l~~l~~~~~~~s~~~~~~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH  390 (540)
                      +.... ..+. ....   .+ ..........|++....| +.+.+|.++.+.+.+++...  ++++..++|.||++..||
T Consensus       202 ~~~~~p~~l~-~~~~---~~-~~~~~~~~~v~~~~~~~~-~~~~~g~~~~~~~~~~~~~~--~~~~~~~~l~pG~~~~~h  273 (385)
T 1j58_A          202 FENQLPGSLK-DDIV---EG-PNGEVPYPFTYRLLEQEP-IESEGGKVYIADSTNFKVSK--TIASALVTVEPGAMRELH  273 (385)
T ss_dssp             ECCCCCCCHH-HHCC---CC-TTCCCSSCSEEEGGGSCC-EECSSEEEEEESTTTSTTCC--SCEEEEEEECTTCEEEEE
T ss_pred             eccCCCCccc-cccc---cC-CCCCCCCCeeeecccCCC-eeCCCceEEEeecccCCccc--ceEEEEEEECCCcccCce
Confidence            54311 0010 0000   00 001112345788888888 56778999999988888654  689999999999999999


Q ss_pred             ccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEE
Q 040805          391 YNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEV  470 (540)
Q Consensus       391 ~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~  470 (540)
                      ||+.+.+++||++|++++.+.++++.                      .....|++||+++||+|.+|++.|.+++++.+
T Consensus       274 ~H~~~~E~~~Vl~G~~~~~i~~~~g~----------------------~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~  331 (385)
T 1j58_A          274 WHPNTHEWQYYISGKARMTVFASDGH----------------------ARTFNYQAGDVGYVPFAMGHYVENIGDEPLVF  331 (385)
T ss_dssp             ECSSSCEEEEEEESEEEEEEEEETTE----------------------EEEEEEESSCEEEECTTCBEEEEECSSSCEEE
T ss_pred             eCCCCCEEEEEEeCeEEEEEEcCCCc----------------------EEEEEEcCCCEEEECCCCeEEEEECCCCCEEE
Confidence            99998999999999999999877651                      12357999999999999999999988889999


Q ss_pred             EEEEecCCCCccccccccccccccCCHHHHHHHcCCCHHHHHHhhcCC
Q 040805          471 VCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQ  518 (540)
Q Consensus       471 v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e~v~kl~~~q  518 (540)
                      +++...+. ...   .+..++|..+|+++++++|+++.+++++|++.+
T Consensus       332 l~v~~~~~-~~d---~~~~~~l~~~~~~v~~~~f~~~~~~~~~l~~~~  375 (385)
T 1j58_A          332 LEIFKDDH-YAD---VSLNQWLAMLPETFVQAHLDLGKDFTDVLSKEK  375 (385)
T ss_dssp             EEEESSSS-CCC---EEHHHHHHTSCHHHHHHHHTCCHHHHTTCCSSC
T ss_pred             EEEECCCC-ccc---cCHHHHHHhCCHHHHHHHhCCCHHHHHhhhccC
Confidence            88765542 111   122578899999999999999999999999654

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=100.00  E-value=2.9e-35  Score=279.57  Aligned_cols=171  Identities=29%  Similarity=0.578  Sum_probs=159.7

Q ss_pred             cCCcccceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEe
Q 040805          145 EGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYN  224 (540)
Q Consensus       145 ~~~~f~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~  224 (540)
                      +..+|++++++++|+++++++|+.++++|+|+..+.++.++++||++.+|||++++||+||++|+++++++++++..++.
T Consensus         7 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~~~~   86 (178)
T 1dgw_A            7 RSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYK   86 (178)
T ss_dssp             CGGGEEEEEEETTEEEEEECCTTSSCGGGGGGTTEEEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEE
T ss_pred             chhhcccceEcCCCEEEEEcccCCcchhcCCcCcEEEEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcEEEE
Confidence            35678899999999999999999988999998888899999999999999988999999999999999999999888999


Q ss_pred             eCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHh-
Q 040805          225 VKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVL-  303 (540)
Q Consensus       225 l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~-  303 (540)
                      |++||+|+||+|++||+.|++++++|+++++++++++||.+..|||+|+.++.+||++||++||++||+++.+++++|+ 
T Consensus        87 l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v~~~~~~~g~~~~~~l~g~~~~~~~~~~~p~~vla~af~v~~~~~~~l~~  166 (178)
T 1dgw_A           87 LDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLL  166 (178)
T ss_dssp             EETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHTT
T ss_pred             ECCCCEEEECCCCeEEEEeCCCCCCEEEEEEECCCCCCCceEEeeccCCcCcchhhhhCCHHHHHHHHCcCHHHHHHHhc
Confidence            9999999999999999999985558999999999999999999999999888899999999999999999999999999 


Q ss_pred             ccCCCCcEEEcc
Q 040805          304 FQQDQGAMVKAS  315 (540)
Q Consensus       304 ~~q~~g~Iv~~~  315 (540)
                      +.|.+|.||++|
T Consensus       167 ~~~~~~~iv~~~  178 (178)
T 1dgw_A          167 QEEQEGVIVKMP  178 (178)
T ss_dssp             SCCSSSSEEECC
T ss_pred             CcCcCceEEEcC
Confidence            556789999985

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=99.96  E-value=1.5e-29  Score=273.06  Aligned_cols=178  Identities=22%  Similarity=0.339  Sum_probs=142.1

Q ss_pred             EcCCCCC--cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCC--C
Q 040805          343 NLFGKRP--SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSR--S  418 (540)
Q Consensus       343 nL~~~~P--~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~--~  418 (540)
                      +|....|  .+.+++|.+..|+ .++|+|+++||++++++|.||||++|||| +|++|+||++|+|.++||+|+++.  +
T Consensus        14 ~L~a~eP~~~~~se~G~~e~~~-~~~~~L~~~gvs~~R~~i~pggl~lPh~~-~A~ei~~V~qG~g~~G~v~p~~~e~f~   91 (496)
T 3ksc_A           14 RLDALEPDNRIESEGGLIETWN-PNNKQFRCAGVALSRATLQRNALRRPYYS-NAPQEIFIQQGNGYFGMVFPGCPETFE   91 (496)
T ss_dssp             CCCCBCCSEEEEETTEEEEECC-TTSHHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECCEEEEEECTTCCCC--
T ss_pred             cCCcCCCccccCCCCcEEEecc-ccchhhccCCceEEEEEecCCCEeCceEc-CCCEEEEEEeCceEEEEEeCCCCccch
Confidence            4555555  6889999998887 67899999999999999999999999999 999999999999999999998653  1


Q ss_pred             cccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEE-EEecCCCC------cccccccc---
Q 040805          419 SSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVC-FEINAEGN------IRFPLAGR---  488 (540)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~-F~~~a~~~------~~~~LAG~---  488 (540)
                      ++++..+ ++. ++....|+++ .+|++||||+||+|++||++|+|+++|++|+ |++++..|      ..+||||+   
T Consensus        92 ~~~~~~~-~~~-~~~~d~~qk~-~~l~~GDV~viPaG~~h~~~N~G~~~lv~v~~~d~~n~~NQld~~~r~F~LaG~~~~  168 (496)
T 3ksc_A           92 EPQESEQ-GEG-RRYRDRHQKV-NRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQ  168 (496)
T ss_dssp             ---------------CCCCCCE-EEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCC
T ss_pred             hhhhccc-ccc-cccccchhee-eccCCCCEEEECCCCcEEEEcCCCCCEEEEEEeccCcccccCCCceeeeEecCCCcc
Confidence            1111111 111 1223446776 4999999999999999999999999999987 67766444      48999998   


Q ss_pred             -------------------ccccccCCHHHHHHHcCCCHHHHHHhh---cCCCCceEEc
Q 040805          489 -------------------NKIFKVMESEAKELAFNTRADEVERVF---GNQDQDWFFK  525 (540)
Q Consensus       489 -------------------~svl~~~~~evla~AF~vs~e~v~kl~---~~q~e~~f~~  525 (540)
                                         +|||++|++++|+.||||+.++|++|+   .++....||.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~ni~sgF~~e~La~Af~v~~e~~~kl~~~~~~~~rg~IV~  227 (496)
T 3ksc_A          169 EFLQYQHQQGGKQEQENEGNNIFSGFKRDFLEDAFNVNRHIVDRLQGRNEDEEKGAIVK  227 (496)
T ss_dssp             TTGGGCC-----------CCSGGGGSCHHHHHHHHTCCHHHHHHHTTTTCCTTTCSEEE
T ss_pred             ccccccccccccccccccCCCchhhcCHHHHHHHHCCCHHHHHHHHhhcccccCccEEE
Confidence                               699999999999999999999999999   4444456663

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=99.95  E-value=8.9e-28  Score=257.56  Aligned_cols=182  Identities=19%  Similarity=0.218  Sum_probs=144.6

Q ss_pred             EcCCCCC--cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCC--
Q 040805          343 NLFGKRP--SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRS--  418 (540)
Q Consensus       343 nL~~~~P--~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~--  418 (540)
                      +|....|  .+.+++|.+..|++.+ |.|+++||++++++|.|||+++||||+ |++|+||++|+|.++||+|+|+..  
T Consensus        11 ~l~a~ep~~~~~se~G~~e~w~~~~-~~L~~~gvs~~r~~i~p~Gl~lPh~~~-a~e~~~V~~G~g~~G~v~pgc~et~~   88 (466)
T 3kgl_A           11 QLNALEPSHVLKAEAGRIEVWDHHA-PQLRCSGVSFVRYIIESKGLYLPSFFS-TAKLSFVAKGEGLMGRVVPGCAETFQ   88 (466)
T ss_dssp             CCCCBCCSEEEEETTEEEEECCTTS-HHHHHHTEEEEEEEECTTEEEEEEEES-SCEEEEEEECEEEEEEECTTCCCCEE
T ss_pred             cCCCCCCcceeeCCCcEEEEECCCC-hhhccCCeEEEEEEECCCCEeCCeeCC-CCeEEEEEeCeEEEEEecCCCcchhh
Confidence            3444445  6889999999999766 999999999999999999999999995 999999999999999999998741  


Q ss_pred             c---cccc--------------ccC---C-Cc---------------cccCCccceEEeeeeCCCcEEEECCCCeEEEEe
Q 040805          419 S---SERR--------------HQG---S-ST---------------REEGSATYHKVSSRIRTDSAYIVPAGHPVVTVA  462 (540)
Q Consensus       419 ~---~~~~--------------~~~---~-~~---------------~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n  462 (540)
                      +   ++++              +++   + ++               .+...+.++++ .+|++|||++||+|++||++|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv-~~l~~GDvi~iPaG~~~~~~N  167 (466)
T 3kgl_A           89 DSSVFQPGGGSPFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKV-EHIRTGDTIATHPGVAQWFYN  167 (466)
T ss_dssp             ECCSSCCCC-----------------------------------------CCEEESCE-EEEETTEEEEECTTCEEEEEC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccceee-ccccCCCEEEECCCCcEEEEe
Confidence            0   0000              000   0 00               01122446677 599999999999999999999


Q ss_pred             cCCCCEEEEEEE-ecCCC------Cccccccccc----------------cccccCCHHHHHHHcCCCHHHHHHhhcCCC
Q 040805          463 SQNNNLEVVCFE-INAEG------NIRFPLAGRN----------------KIFKVMESEAKELAFNTRADEVERVFGNQD  519 (540)
Q Consensus       463 ~~~e~l~~v~F~-~~a~~------~~~~~LAG~~----------------svl~~~~~evla~AF~vs~e~v~kl~~~q~  519 (540)
                      +++++|++|++. +++..      +..|||||+.                |||++|++++|+.||||+.+++++|+..|+
T Consensus       168 ~g~e~L~~l~~~d~~n~~nQld~~~~~F~LaG~~~~~~~~~~~~~~~~~~ni~sGF~~e~La~Af~v~~e~~~kL~~~q~  247 (466)
T 3kgl_A          168 DGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQD  247 (466)
T ss_dssp             CSSSCEEEEEEEESSSTTCCSCSSCCEEESSCCBTTCCTTSTTCTTCCBCCGGGGSCHHHHHHHHTSCHHHHHHHTCTTC
T ss_pred             CCCCcEEEEEEEcCCCcccccCCceeeeEecCCCccccccccccccccCCCccccCCHHHHHHHhCCCHHHHHHHhcccc
Confidence            999999999874 43322      3679999986                999999999999999999999999998876


Q ss_pred             -CceEEcCC
Q 040805          520 -QDWFFKGP  527 (540)
Q Consensus       520 -e~~f~~~~  527 (540)
                       ...|+...
T Consensus       248 ~~G~Iv~v~  256 (466)
T 3kgl_A          248 NRGNIIRVQ  256 (466)
T ss_dssp             CSCSEEECC
T ss_pred             CceeEEEec
Confidence             45777653

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=99.95  E-value=3.2e-27  Score=224.25  Aligned_cols=161  Identities=19%  Similarity=0.256  Sum_probs=138.7

Q ss_pred             CceeEcCCCCCcccCCCceEEEecC-----CCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcC
Q 040805          339 RGTFNLFGKRPSHSNNFGELFEADS-----NDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACP  413 (540)
Q Consensus       339 ~~~fnL~~~~P~~~n~~G~~~~~~~-----~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p  413 (540)
                      ++.|++.+.++.|.+++|+++.+++     ..+|.|+  ++++.+++|.|||+..|| |++|++|+||++|+++++++++
T Consensus         3 p~~f~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~pg~~~~pH-h~~a~E~~yVl~G~~~v~v~~~   79 (178)
T 1dgw_A            3 PYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLR--DYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNP   79 (178)
T ss_dssp             TTEECGGGEEEEEEETTEEEEEECCTTSSCGGGGGGT--TEEEEEEEECTTEEEEEE-EESSEEEEEEEESEEEEEEEET
T ss_pred             CceechhhcccceEcCCCEEEEEcccCCcchhcCCcC--cEEEEEEEecCCcEecCc-CCCCCEEEEEEeEEEEEEEEeC
Confidence            5689999998989999999999776     3355554  699999999999999999 8999999999999999999998


Q ss_pred             CCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCC-CEEEEEEEecCCCCc---ccccccc-
Q 040805          414 HVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNN-NLEVVCFEINAEGNI---RFPLAGR-  488 (540)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e-~l~~v~F~~~a~~~~---~~~LAG~-  488 (540)
                      ++.                     +  ...|++||+++||+|.+||+.|.+++ ++.++++..+++++.   .++|||+ 
T Consensus        80 ~~~---------------------~--~~~l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v~~~~~~~g~~~~~~l~g~~  136 (178)
T 1dgw_A           80 DGR---------------------D--TYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTK  136 (178)
T ss_dssp             TEE---------------------E--EEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESSCCS
T ss_pred             CCc---------------------E--EEEECCCCEEEECCCCeEEEEeCCCCCCEEEEEEECCCCCCCceEEeeccCCc
Confidence            651                     2  35899999999999999999998775 799988755554553   7789998 


Q ss_pred             --ccccccCCHHHHHHHcCCCHHHHHHhh-cCCCCceEEc
Q 040805          489 --NKIFKVMESEAKELAFNTRADEVERVF-GNQDQDWFFK  525 (540)
Q Consensus       489 --~svl~~~~~evla~AF~vs~e~v~kl~-~~q~e~~f~~  525 (540)
                        ++||+++|++||++||+++.+++++|+ ..|++..|+.
T Consensus       137 ~~~~~~~~~p~~vla~af~v~~~~~~~l~~~~~~~~~iv~  176 (178)
T 1dgw_A          137 RLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVK  176 (178)
T ss_dssp             SCCCGGGGSCHHHHHHHHTSCHHHHHHHTTSCCSSSSEEE
T ss_pred             CcchhhhhCCHHHHHHHHCcCHHHHHHHhcCcCcCceEEE
Confidence              799999999999999999999999999 5556677875

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=99.95  E-value=1.8e-27  Score=255.13  Aligned_cols=180  Identities=17%  Similarity=0.239  Sum_probs=140.8

Q ss_pred             EcCCCCC--cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCC--C
Q 040805          343 NLFGKRP--SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSR--S  418 (540)
Q Consensus       343 nL~~~~P--~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~--~  418 (540)
                      +|....|  .+.+++|.+..|++. .+.|+|+||++++++|.||||++|||| +|++|+||++|+|+++||.|+|+.  +
T Consensus        18 ~l~a~eP~~~i~se~G~~e~~d~~-~~~l~~~gvs~~R~~i~P~gl~~Ph~h-~a~ei~yV~qG~g~~g~v~pgc~etf~   95 (465)
T 3qac_A           18 RLTALEPTNRIQAERGLTEVWDSN-EQEFRCAGVSVIRRTIEPHGLLLPSFT-SAPELIYIEQGNGITGMMIPGCPETYE   95 (465)
T ss_dssp             CCCCBCCCEEEEETTEEEEECCTT-SHHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECEEEEEEECTTCCCCC-
T ss_pred             cCCCCCCccceeCCCcEEEEECCC-ChhhcccceEEEEEEEcCCcCcccEEc-CCCEEEEEEECcEEEEEecCCCCceee
Confidence            5556666  478999999999855 478999999999999999999999999 999999999999999999998752  1


Q ss_pred             cccc------------cccC---CCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE-EecCC----
Q 040805          419 SSER------------RHQG---SSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF-EINAE----  478 (540)
Q Consensus       419 ~~~~------------~~~~---~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F-~~~a~----  478 (540)
                      ++.+            ++++   ++.++.. +.++++ .+|++||||+||+|++||++|+|+++|++|++ ++++.    
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~hqk~-~~~~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~n~~nql  173 (465)
T 3qac_A           96 SGSQQFQGGEDERIREQGSRKFGMRGDRFQ-DQHQKI-RHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTANHANQL  173 (465)
T ss_dssp             -----------------------------C-CCCCCE-EEEETTEEEEECTTCEEEEECCSSSCEEEEEEECTTSTTCCS
T ss_pred             cchhcccccccccccccccccccccccccc-ccccce-eeecCCCEEEECCCCeEEEEcCCCCCEEEEEEEcCCCccccc
Confidence            1100            0000   0111112 233554 78999999999999999999999999999875 44331    


Q ss_pred             ---CCcccccccc----------------------ccccccCCHHHHHHHcCCCHHHHHHhhcCCCC-ceEEcC
Q 040805          479 ---GNIRFPLAGR----------------------NKIFKVMESEAKELAFNTRADEVERVFGNQDQ-DWFFKG  526 (540)
Q Consensus       479 ---~~~~~~LAG~----------------------~svl~~~~~evla~AF~vs~e~v~kl~~~q~e-~~f~~~  526 (540)
                         ++..+||||+                      +|||++|++++|+.||||+.+++++|+..|++ ..|+..
T Consensus       174 d~~~~r~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~ni~sgF~~e~La~Af~v~~~~~~kl~~~q~~rG~Ivrv  247 (465)
T 3qac_A          174 DKNFPTRFYLAGKPQQEHSGEHQFSRESRRGERNTGNIFRGFETRLLAESFGVSEEIAQKLQAEQDDRGNIVRV  247 (465)
T ss_dssp             CSSSCCEEESSSCCCCSCC--------------CCCCGGGGSCHHHHHHHHTCCHHHHHHHHTTTCCSCSEEEC
T ss_pred             ccccceeEEecCCCccccccccccccccccccccccchhhcCCHHHHHHHhCCCHHHHHHhhhccccceeEEEe
Confidence               3467999997                      58999999999999999999999999988763 467643

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A

Probab=99.94  E-value=5e-27  Score=254.44  Aligned_cols=183  Identities=19%  Similarity=0.292  Sum_probs=142.5

Q ss_pred             ceeEcCCCCC--cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCC
Q 040805          340 GTFNLFGKRP--SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSR  417 (540)
Q Consensus       340 ~~fnL~~~~P--~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~  417 (540)
                      ..++|....|  .|.+++|.+..|+. +.|+|+++||++++++|.||||++|||| ++++|+||++|+|+++||+|+|+.
T Consensus        10 ~~~~L~a~~P~~~~~se~G~~e~~~~-~~~~l~~~gv~~~r~~i~pggl~~Ph~~-~~~~i~yV~~G~g~vg~v~pgc~e   87 (493)
T 2d5f_A           10 QLNNLNALEPDHRVESEGGLIETWNS-QHPELQCAGVTVSKRTLNRNGLHLPSYS-PYPQMIIVVQGKGAIGFAFPGCPE   87 (493)
T ss_dssp             CCSCCCCBCCCEEEECSSEEEEECCT-TSHHHHHHTCEEEEEEECTTEEEEEEEC-SSCEEEEEEECEEEEEECCTTCCC
T ss_pred             CcccCCCCCCcceeecCCcEEEEeCC-CChhhccCCEEEEEEEeCCCcEeCceec-CCCeEEEEEeCEEEEEEEeCCCcc
Confidence            3678888888  58899999877774 5599999999999999999999999998 588999999999999999999862


Q ss_pred             --Ccccccc-cCCC-ccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE-EecCCC------Ccccccc
Q 040805          418 --SSSERRH-QGSS-TREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF-EINAEG------NIRFPLA  486 (540)
Q Consensus       418 --~~~~~~~-~~~~-~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F-~~~a~~------~~~~~LA  486 (540)
                        +++...+ ++++ ++++..+.++++ .+|++||||+||+|++||++|+++++|++|++ ++++..      +..+|||
T Consensus        88 t~~~~~~~~~~~~~~~~~~~~d~~qkv-~~l~~GDvi~iPaG~~h~~~N~g~~~l~~v~~~d~~n~~nqld~~~~~F~La  166 (493)
T 2d5f_A           88 TFEKPQQQSSRRGSRSQQQLQDSHQKI-RHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLA  166 (493)
T ss_dssp             CEEECC-------------CSEEESCE-EEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTTCTTCCSCSSCCCEESS
T ss_pred             ccccccccccccccccccccccccceE-EEecCCCEEEECCCCcEEEEeCCCCCEEEEEEecCcCcccccccccceeecc
Confidence              1110000 0000 000011222344 48999999999999999999999999999986 433322      3688999


Q ss_pred             cc---------------------------------ccccccCCHHHHHHHcCCCHHHHHHhhcCCC-CceEEc
Q 040805          487 GR---------------------------------NKIFKVMESEAKELAFNTRADEVERVFGNQD-QDWFFK  525 (540)
Q Consensus       487 G~---------------------------------~svl~~~~~evla~AF~vs~e~v~kl~~~q~-e~~f~~  525 (540)
                      |+                                 +|||++|++++|+.||+|+.++|++|+..++ ..+||.
T Consensus       167 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nif~gf~~e~La~aF~v~~~~v~kl~~~~~~~g~Iv~  239 (493)
T 2d5f_A          167 GNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVT  239 (493)
T ss_dssp             SCCCCSCGGGTC---------------------CCCCGGGGSCHHHHHHHTTCCHHHHHHTTCTTCCSCSEEE
T ss_pred             CCccccchhhhhhcccccccccccccccccccccccchhhcCCHHHHHhHhCCCHHHHHHhhhcccCcccEEE
Confidence            84                                 4899999999999999999999999998876 356775

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=99.94  E-value=5.4e-27  Score=253.08  Aligned_cols=179  Identities=17%  Similarity=0.304  Sum_probs=140.6

Q ss_pred             EcCCCCC--cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCC--C
Q 040805          343 NLFGKRP--SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSR--S  418 (540)
Q Consensus       343 nL~~~~P--~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~--~  418 (540)
                      +|....|  .+.+++|.+..|+ .++|.|+++||++++++|.||||++||||+ |++|+||++|++.++||.|+|+.  +
T Consensus        16 ~l~a~eP~~~i~se~G~~e~w~-~~~p~l~~~Gvs~~R~~i~p~Gl~lPh~~~-a~el~yV~qG~g~~G~v~Pgcpet~~   93 (531)
T 3fz3_A           16 QLQAREPDNRIQAEAGQIETWN-FNQGDFQCAGVAASRITIQRNGLHLPSYSN-APQLIYIVQGRGVLGAVFSGCPETFE   93 (531)
T ss_dssp             CCCCBCCCEEEEETTEEEEECC-TTSHHHHHHTEEEEEEEECTTEEEEEEEES-SCEEEEEEECEEEEEECCTTCCCCEE
T ss_pred             ccCcCCCchhcccCCceEEEeC-CCChhhccCcceEEEEEecCCCEeCCccCC-CCeEEEEEECcEEEEEEcCCCccccc
Confidence            4445555  5889999999998 468999999999999999999999999995 99999999999999999999984  0


Q ss_pred             c-c--c---------------c-------ccc----------C---C------------------CccccCC--ccceEE
Q 040805          419 S-S--E---------------R-------RHQ----------G---S------------------STREEGS--ATYHKV  440 (540)
Q Consensus       419 ~-~--~---------------~-------~~~----------~---~------------------~~~~~~~--~~~~~~  440 (540)
                      + .  .               +       .++          .   +                  +..+...  +.++++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv  173 (531)
T 3fz3_A           94 ESQQSSQQGRQQEQEQERQQQQQGEQGRQQGQQEQQQERQGRQQGRQQQEEGRQQEQQQGQQGRPQQQQQFRQLDRHQKT  173 (531)
T ss_dssp             CCCC-------------------------------------------------------------------CCSCEESCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccchhccccccccccccccccccccccccccccceee
Confidence            0 0  0               0       000          0   0                  0000011  344566


Q ss_pred             eeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE-EecCC------CCcccccccc-------------------------
Q 040805          441 SSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF-EINAE------GNIRFPLAGR-------------------------  488 (540)
Q Consensus       441 ~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F-~~~a~------~~~~~~LAG~-------------------------  488 (540)
                       .+|++|||++||+|.+||++|+++++|++|++ |+++.      ++..|||||+                         
T Consensus       174 -~~vr~GDviaiPaG~~~w~yN~G~~~l~iv~~~Dt~n~~NQld~~~r~F~LAGn~~~~~~~~~~~~~~~~~~~~~~~~~  252 (531)
T 3fz3_A          174 -RRIREGDVVAIPAGVAYWSYNDGDQELVAVNLFHVSSDHNQLDQNPRKFYLAGNPENEFNQQGQSQPRQQGEQGRPGQH  252 (531)
T ss_dssp             -EEEETTEEEEECTTCCEEEECCSSSCEEEEEEEETTCTTCCSCSSCCEEESSSCCCCTTCC------------------
T ss_pred             -ecccCCcEEEECCCCeEEEEeCCCceEEEEEEEccccccccCCCccceeEEcCCCcccccccccccccccccccccccc
Confidence             58999999999999999999999999999985 65442      2468999997                         


Q ss_pred             ----------------ccccccCCHHHHHHHcCCCHHHHHHhhcCCC-CceEE
Q 040805          489 ----------------NKIFKVMESEAKELAFNTRADEVERVFGNQD-QDWFF  524 (540)
Q Consensus       489 ----------------~svl~~~~~evla~AF~vs~e~v~kl~~~q~-e~~f~  524 (540)
                                      +|||++|+.++|+.||||+.+++++|+..++ ...||
T Consensus       253 ~~~~~~~~~~~~~~~~~nifsGFs~e~La~A~~v~~~~a~kLq~~~~~rg~IV  305 (531)
T 3fz3_A          253 QQPFGRPRQQEQQGNGNNVFSGFNTQLLAQALNVNEETARNLQGQNDNRNQII  305 (531)
T ss_dssp             --------------CCSSGGGGSCHHHHHHHHTSCHHHHHHHHTSSCCSCSEE
T ss_pred             cccccccchhhhcccCCCeeecCCHHHHHHHHCCCHHHHHHHhcccccCceEE
Confidence                            3899999999999999999999999998765 34555

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=99.94  E-value=1.3e-26  Score=249.24  Aligned_cols=179  Identities=22%  Similarity=0.275  Sum_probs=140.6

Q ss_pred             EcCCCCC--cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCC--C
Q 040805          343 NLFGKRP--SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSR--S  418 (540)
Q Consensus       343 nL~~~~P--~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~--~  418 (540)
                      +|....|  .+.+++|.+..++. +.|.|+++|+++++++|.|||+++|||| +|++|+||++|+|++++|+|+|+.  +
T Consensus        31 ~l~a~eP~~~v~se~G~~~~~~~-~~~~l~~~gvs~~r~~i~pggl~~Ph~h-~a~ei~yVl~G~g~vg~v~p~~~~tf~  108 (459)
T 2e9q_A           31 NLRAQDPVRRAEAEAGFTEVWDQ-DNDEFQCAGVNMIRHTIRPKGLLLPGFS-NAPKLIFVAQGFGIRGIAIPGCAETYQ  108 (459)
T ss_dssp             SCCCBCCCEEEEETTEEEEECCT-TSHHHHHHTEEEEEEEECTTEEEEEEEE-SSCEEEEEEECEEEEEECCTTCCCCEE
T ss_pred             cCCcCCCCceEecCCcEEEecCC-CChhhccCceEEEEEEEcCCCEecceec-CCceEEEEEeeEEEEEEEeCCCcchhc
Confidence            5666667  48899999988775 4599999999999999999999999998 699999999999999999998752  0


Q ss_pred             ccc-ccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecC--CC-----Ccccccccc--
Q 040805          419 SSE-RRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINA--EG-----NIRFPLAGR--  488 (540)
Q Consensus       419 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a--~~-----~~~~~LAG~--  488 (540)
                      ++. +.++++++  ..+.  +....+|++||||+||+|++||++|.++++|++|++..++  .+     +..++|||.  
T Consensus       109 ~~~~~~~~~~~~--~~d~--~q~~~~l~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~~n~~nqld~~~~~F~LaG~~~  184 (459)
T 2e9q_A          109 TDLRRSQSAGSA--FKDQ--HQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPE  184 (459)
T ss_dssp             ECCC-------C--CCEE--ECCCEEEETTEEEEECTTCCEEEEECSSSCEEEEEEEESSSTTCCSCSSCCEEESSSCCC
T ss_pred             cchhhccccccc--cccc--cceeEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEecCCCcccccCcccceeeccCCcc
Confidence            100 00000001  1111  1223589999999999999999999999999999864433  12     568899985  


Q ss_pred             ----------------------ccccccCCHHHHHHHcCCCHHHHHHhhcCCC-CceEEcCC
Q 040805          489 ----------------------NKIFKVMESEAKELAFNTRADEVERVFGNQD-QDWFFKGP  527 (540)
Q Consensus       489 ----------------------~svl~~~~~evla~AF~vs~e~v~kl~~~q~-e~~f~~~~  527 (540)
                                            +|||++||++||+.||+|+.++|++|+..++ ..+||+..
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~nif~gf~~evLa~aF~v~~~~v~kL~~~~~~~G~Iv~~~  246 (459)
T 2e9q_A          185 QVERGVEEWERSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIVQVD  246 (459)
T ss_dssp             CCSSTTCC------------CCCCTTTTSCHHHHHHHHTCCHHHHHHHHTTTCCSTTEEECC
T ss_pred             ccchhhhccccccccccccccccchhhcCCHHHHHhhcCCCHHHHHhhhhcccCCccEEEeC
Confidence                                  3899999999999999999999999998876 34888754

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=99.93  E-value=1.2e-25  Score=242.82  Aligned_cols=181  Identities=17%  Similarity=0.256  Sum_probs=136.6

Q ss_pred             EcCCCCC--cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCC--C
Q 040805          343 NLFGKRP--SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSR--S  418 (540)
Q Consensus       343 nL~~~~P--~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~--~  418 (540)
                      +|....|  .+.+++|.+..|+.. .|.|+++||++++++|.|||+++|||| +|++|+||++|+|++++|.|+|+.  +
T Consensus        16 ~l~a~~P~~~v~se~G~~e~~~~~-~~~l~~~gvs~~r~~l~Pggl~~Ph~~-~a~ei~yV~~G~g~~g~v~pg~~et~~   93 (476)
T 1fxz_A           16 KLNALKPDNRIESEGGLIETWNPN-NKPFQCAGVALSRCTLNRNALRRPSYT-NGPQEIYIQQGKGIFGMIYPGCPSTFE   93 (476)
T ss_dssp             CCCCBCCSCEEEETTEEEEECCTT-SHHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECCEEEEEECTTCCCC--
T ss_pred             cCCCCCCceEEecCCceEEeeCCC-ChhhccCceEEEEEEEcCCCEecceec-CCceEEEEEecEEEEEEEcCCCcchhh
Confidence            3444455  588999999888855 599999999999999999999999997 599999999999999999998862  1


Q ss_pred             cccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE-EecCC------CCcccccccc---
Q 040805          419 SSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF-EINAE------GNIRFPLAGR---  488 (540)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F-~~~a~------~~~~~~LAG~---  488 (540)
                      ++....++++.++..+. .+++ .+|++||||+||+|.+||++|.++++|++|++ ++++.      .+..|+|||+   
T Consensus        94 ~~~~~~~~~~~~~~~d~-~qk~-~~l~~GDvi~iPaG~~h~~~N~G~~~l~~i~~~d~~n~~nqld~~~~~F~LaG~~~~  171 (476)
T 1fxz_A           94 EPQQPQQRGQSSRPQDR-HQKI-YNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQ  171 (476)
T ss_dssp             ----------------C-CCCE-EEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCC
T ss_pred             ccccccccccccccccc-cceE-EEEeCCCEEEECCCCcEEEEeCCCCCEEEEEEecCCCcccccCCccceeeccCCccc
Confidence            11000000000011111 1223 58999999999999999999999999999875 43331      2468889984   


Q ss_pred             ---------------------------ccccccCCHHHHHHHcCCCHHHHHHhhcCCC---CceEEcCC
Q 040805          489 ---------------------------NKIFKVMESEAKELAFNTRADEVERVFGNQD---QDWFFKGP  527 (540)
Q Consensus       489 ---------------------------~svl~~~~~evla~AF~vs~e~v~kl~~~q~---e~~f~~~~  527 (540)
                                                 +|||++||++||+.||+|+.++|++|+..++   ..+||+..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~gf~~~vLa~af~v~~~~~~kl~~~~~~~~~g~Iv~v~  240 (476)
T 1fxz_A          172 EFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVK  240 (476)
T ss_dssp             TTHHHHC-------------------CCCGGGGSCHHHHHHHHTCCHHHHHHHSCC-----CCSEEECS
T ss_pred             cccccccccccccccccccccccccccchhhhcCCHHHHHhhhCCCHHHHHhhhccccccccccEEEeC
Confidence                                       3899999999999999999999999998776   45788744

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=99.93  E-value=1.6e-25  Score=242.57  Aligned_cols=181  Identities=21%  Similarity=0.336  Sum_probs=137.9

Q ss_pred             EcCCCCC--cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCC--
Q 040805          343 NLFGKRP--SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRS--  418 (540)
Q Consensus       343 nL~~~~P--~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~--  418 (540)
                      +|....|  .+.+++|.+..|++.+ |.|+|+||++++++|.|||+++|||| +|++|+||++|+|+++||.|+|+..  
T Consensus        16 ~l~a~~p~~~~~se~G~~e~~~~~~-~~l~~~gvs~~r~~i~p~gl~lPh~~-~a~~~~yV~~G~g~~g~v~pg~~et~~   93 (510)
T 3c3v_A           16 RLNAQRPDNRIESEGGYIETWNPNN-QEFECAGVALSRLVLRRNALRRPFYS-NAPQEIFIQQGRGYFGLIFPGCPSTYE   93 (510)
T ss_dssp             CCCCBCCCEEEEETTEEEEECCTTS-HHHHHHTCEEEEEEECTTEEEEEEEC-SSCEEEEEEECCEEEEEECTTCCCCEE
T ss_pred             cCCCCCchhhhccCCceEEEeCCCC-cccccCcEEEEEEEECCCCCccceec-CCCeEEEEEeCEEEEEEEeCCCccccc
Confidence            4445555  6889999998887554 99999999999999999999999997 6999999999999999999988521  


Q ss_pred             ---------cccccccCCCccccC---CccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE-EecCC------C
Q 040805          419 ---------SSERRHQGSSTREEG---SATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF-EINAE------G  479 (540)
Q Consensus       419 ---------~~~~~~~~~~~~~~~---~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F-~~~a~------~  479 (540)
                               .+.+++++.+++++.   .+.++++ .+|++||||+||+|++||++|.++++|++|++ ++++.      +
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~qkv-~~v~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d~~n~~nqld~~  172 (510)
T 3c3v_A           94 EPAQQGRRYQSQRPPRRLQEEDQSQQQQDSHQKV-HRFNEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNNNDNQLDQF  172 (510)
T ss_dssp             EECCC--------------------CEEEEESCC-EEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTBTTCCSCSC
T ss_pred             cccccccccccccccccccccccccccccccceE-EEecCCCEEEECCCCCEEEEeCCCCCEEEEEEeCCCCcccccccc
Confidence                     000111111111110   1122333 58999999999999999999999999999875 44331      1


Q ss_pred             Ccccccccc----------------------------------------------------------ccccccCCHHHHH
Q 040805          480 NIRFPLAGR----------------------------------------------------------NKIFKVMESEAKE  501 (540)
Q Consensus       480 ~~~~~LAG~----------------------------------------------------------~svl~~~~~evla  501 (540)
                      +..|||||+                                                          +|||++|++++|+
T Consensus       173 ~r~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~sgF~~~~La  252 (510)
T 3c3v_A          173 PRRFNLAGNHEQEFLRYQQQSRQSRRRSLPYSPYSPQSQPRQEEREFSPRGQHSRRERAGQEEEHEGGNIFSGFTPEFLA  252 (510)
T ss_dssp             CCCEESSCCCCCTTGGGCC------------------------------------------------CCTGGGSCHHHHH
T ss_pred             cceeEecCCcccccchhhhccccccccccccccccccccccccccccccccccccccccccccccccccceecCCHHHHH
Confidence            467889982                                                          3799999999999


Q ss_pred             HHcCCC-HHHHHHhhcCCC---CceEEcC
Q 040805          502 LAFNTR-ADEVERVFGNQD---QDWFFKG  526 (540)
Q Consensus       502 ~AF~vs-~e~v~kl~~~q~---e~~f~~~  526 (540)
                      .||||+ .+++++|+..++   ..+||..
T Consensus       253 ~af~v~~~~~~~~l~~~~~~~~~g~Iv~v  281 (510)
T 3c3v_A          253 QAFQVDDRQIVQNLRGENESEEQGAIVTV  281 (510)
T ss_dssp             HHHTCCCHHHHHHHTTTTCCTTSCSEEEC
T ss_pred             HHhCCCHHHHHHHhhccccccccccEEEe
Confidence            999999 999999998776   4577765

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=99.92  E-value=1e-24  Score=230.66  Aligned_cols=166  Identities=16%  Similarity=0.202  Sum_probs=139.3

Q ss_pred             CceeEcCC-CCCcccCCCceEEEec--CCCCCCCcccc-ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCC
Q 040805          339 RGTFNLFG-KRPSHSNNFGELFEAD--SNDFRPLEDLD-ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPH  414 (540)
Q Consensus       339 ~~~fnL~~-~~P~~~n~~G~~~~~~--~~~~p~L~~l~-isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~  414 (540)
                      ++.|+..+ .++.|.+++|.+..++  ..++|.|++++ +++++++|.|||+++|||| +|++|+||++|+|++++|.++
T Consensus        13 p~~f~~~~~~~~~~~~e~G~i~~l~~~~~~~~~l~~~~~~s~~~~~l~pgg~~~ph~~-~a~ei~yVl~G~~~v~~v~~~   91 (397)
T 2phl_A           13 PFYFNSDNSWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQA-DAELLLVVRSGSAILVLVKPD   91 (397)
T ss_dssp             TTEECGGGTEEEEEEETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEE-SEEEEEEEEESEEEEEEEETT
T ss_pred             CcEeccchhccceEEcCCEEEEEecccCCCChhhcccccEEEEEEEECCCcCccCEec-CCCeEEEEEeeeEEEEEEeCC
Confidence            34555555 4578999999999972  24568999997 9999999999999999997 999999999999999999997


Q ss_pred             CCCCcccccccCCCccccCCccceEEeeeeCCCcE------EEECCCCeEEEEecC-CCCEEEEEEEecCC--CCccccc
Q 040805          415 VSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSA------YIVPAGHPVVTVASQ-NNNLEVVCFEINAE--GNIRFPL  485 (540)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV------~vVPaG~~h~~~n~~-~e~l~~v~F~~~a~--~~~~~~L  485 (540)
                      +                      + ....|++|||      ++||+|.+||++|.+ +++|.++++...++  ....++|
T Consensus        92 ~----------------------~-~~~~l~~GDv~~~~~~~~iP~G~~h~~~N~g~~~~l~~i~~~~~~~~~~~~~f~L  148 (397)
T 2phl_A           92 D----------------------R-REYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFL  148 (397)
T ss_dssp             T----------------------E-EEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSSSSCCEEEC
T ss_pred             C----------------------c-EEEEECCCCcccccceEEECCCCcEEEEeCCCCCCeEEEEeecCCCCccceeeec
Confidence            5                      2 2468999999      999999999999987 78999998643332  2346889


Q ss_pred             ccc---ccccccCCHHHHHHHcCCCHHHHHHhhcCC---CCceEEcCCC
Q 040805          486 AGR---NKIFKVMESEAKELAFNTRADEVERVFGNQ---DQDWFFKGPS  528 (540)
Q Consensus       486 AG~---~svl~~~~~evla~AF~vs~e~v~kl~~~q---~e~~f~~~~~  528 (540)
                      +|.   .|||++||++||++||+++.+++++|+.++   ++.+|++.+.
T Consensus       149 ~G~~~~~s~~~~~~~~vLa~af~v~~~~v~~l~~~~~~q~~~~Iv~~~~  197 (397)
T 2phl_A          149 SSTEAQQSYLQEFSKHILEASFNSKFEEINRVLFEEEGQQEGVIVNIDS  197 (397)
T ss_dssp             CCBTTBCCGGGGSCHHHHHHHHTSCHHHHHHHHTCSTTCBSSSEEECCT
T ss_pred             cCCCchhHHhhcCCHHHHHHHhCCCHHHHHhhhhcccccccCceEEcCc
Confidence            985   579999999999999999999999999544   3578888775

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=99.92  E-value=1.9e-24  Score=229.99  Aligned_cols=155  Identities=17%  Similarity=0.200  Sum_probs=131.1

Q ss_pred             CceeEcCCCCCcccCCCceEEEecCC--CCCCCccc-cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCC
Q 040805          339 RGTFNLFGKRPSHSNNFGELFEADSN--DFRPLEDL-DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHV  415 (540)
Q Consensus       339 ~~~fnL~~~~P~~~n~~G~~~~~~~~--~~p~L~~l-~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~  415 (540)
                      ++.|...+-++.|.+++|.+..|...  +.|+|.+| ++++++++|.|||+++|| |++|++|+||++|+|++++|.|++
T Consensus         6 p~~f~~~~f~~~~~se~G~i~~l~~f~~~s~~l~~l~~~~l~~~~l~p~gl~~Ph-h~~A~ei~yV~~G~g~~g~V~~~~   84 (418)
T 3s7i_A            6 PFYFPSRRFSTRYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPK-HADADNILVIQQGQATVTVANGNN   84 (418)
T ss_dssp             TTEECGGGEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEECSSC
T ss_pred             CcccccccccceEEcCCcEEEEecccCCcchhcccccceEEEEEEecCCceeeee-eCCCCeEEEEEEeeEEEEEEecCC
Confidence            44555555557899999999999753  35788874 799999999999999999 599999999999999999999965


Q ss_pred             CCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEec-CCCCEEEEEEEecCCCC---ccccccccc--
Q 040805          416 SRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS-QNNNLEVVCFEINAEGN---IRFPLAGRN--  489 (540)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~-~~e~l~~v~F~~~a~~~---~~~~LAG~~--  489 (540)
                                             ....+|++||||+||+|++||++|. +++.|.|++|.++++++   ..++|||..  
T Consensus        85 -----------------------~~~~~l~~GDv~~~P~G~~h~~~N~g~~~~l~i~~l~~~s~~pg~~~~f~laG~~~~  141 (418)
T 3s7i_A           85 -----------------------RKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMPVNTPGQFEDFFPASSRDQ  141 (418)
T ss_dssp             -----------------------EEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEECSSCCSSC
T ss_pred             -----------------------EEEEEecCCCEEEECCCCeEEEEecCCCccEEEEEeecCcCCCCccceeeccCCcch
Confidence                                   2346899999999999999999995 45689999875555444   567789874  


Q ss_pred             -cccccCCHHHHHHHcCCCHHHHHHhhcC
Q 040805          490 -KIFKVMESEAKELAFNTRADEVERVFGN  517 (540)
Q Consensus       490 -svl~~~~~evla~AF~vs~e~v~kl~~~  517 (540)
                       ++|++||++||++||+++.++|++|+..
T Consensus       142 ~s~~~gf~~evLa~af~v~~~~v~kl~~~  170 (418)
T 3s7i_A          142 SSYLQGFSRNTLEAAFNAEFNEIRRVLLE  170 (418)
T ss_dssp             CCGGGGSCHHHHHHHHTSCHHHHHHHTTS
T ss_pred             hHHhhcCCHHHHHHHHCcCHHHHHhhhcc
Confidence             7999999999999999999999999954

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=99.91  E-value=1.3e-23  Score=224.92  Aligned_cols=166  Identities=18%  Similarity=0.277  Sum_probs=138.4

Q ss_pred             CceeEcCC-CCCcccCCCceEEEecC--CCCCCCcccc-ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCC
Q 040805          339 RGTFNLFG-KRPSHSNNFGELFEADS--NDFRPLEDLD-ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPH  414 (540)
Q Consensus       339 ~~~fnL~~-~~P~~~n~~G~~~~~~~--~~~p~L~~l~-isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~  414 (540)
                      ++.|++.+ .++.+.+++|++..++.  .++|.|++++ +++++++|.|||++.|| |++|++|+||++|+|++++++++
T Consensus        22 p~~f~~~~~~~~~~~se~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pH-h~~a~Ei~yVl~G~g~v~~v~~~  100 (434)
T 2ea7_A           22 PFYFNSDRWFRTLYRNEWGHIRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPH-HADADFLLVVLNGTAVLTLVNPD  100 (434)
T ss_dssp             TTEECTTTSEEEEEEETTEEEEEECCSTTTCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEECSS
T ss_pred             CeEEeccccccceEEcCCEEEEEEeccCCcccccCccccEEEEEEEecCCcCccCc-cCCCceEEEEEecEEEEEEEeCC
Confidence            34555555 45889999999999743  5668999997 99999999999999999 68999999999999999999985


Q ss_pred             CCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecC-CCCEEEEEEEecCCCC---cccccccc--
Q 040805          415 VSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQ-NNNLEVVCFEINAEGN---IRFPLAGR--  488 (540)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~-~e~l~~v~F~~~a~~~---~~~~LAG~--  488 (540)
                      +                       .....|++|||++||+|.+||++|.+ +++|+++++..+++++   ..++|+|+  
T Consensus       101 ~-----------------------~~~~~l~~GDv~~iP~G~~H~~~N~g~~e~l~~l~~~~~s~~pg~~~~f~l~g~~~  157 (434)
T 2ea7_A          101 S-----------------------RDSYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIPVNNPHRFQDFFLSSTEA  157 (434)
T ss_dssp             C-----------------------EEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCSS
T ss_pred             C-----------------------CEEEEeCCCCEEEECCCccEEEEeCCCCCCeEEEEEecCCCCCCceeeeeecCCcc
Confidence            4                       23458999999999999999999987 7899999874433333   45678886  


Q ss_pred             -ccccccCCHHHHHHHcCCCHHHHHHhh-cCC----------CCceEEcCCC
Q 040805          489 -NKIFKVMESEAKELAFNTRADEVERVF-GNQ----------DQDWFFKGPS  528 (540)
Q Consensus       489 -~svl~~~~~evla~AF~vs~e~v~kl~-~~q----------~e~~f~~~~~  528 (540)
                       .|||++||++||++||+++.+++++|+ ..+          ++.+|++.++
T Consensus       158 ~~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~~~~~~~~q~~g~Iv~~~~  209 (434)
T 2ea7_A          158 QQSYLRGFSKNILEASFDSDFKEINRVLFGEERQQQQGEESREEGVIVELKR  209 (434)
T ss_dssp             CCCGGGGSCHHHHHHHHTSCHHHHHHHHTCC---------CCCSSSEEECCH
T ss_pred             hhhhhhcCCHHHHHHHhCCCHHHHHhhhhcccccccccccccccceEEECCc
Confidence             369999999999999999999999999 543          4679998754

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=99.90  E-value=4.5e-23  Score=221.31  Aligned_cols=166  Identities=19%  Similarity=0.247  Sum_probs=139.7

Q ss_pred             CceeEcCCCCCcccCCCceEEEecCC--CCCCCcccc-ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCC
Q 040805          339 RGTFNLFGKRPSHSNNFGELFEADSN--DFRPLEDLD-ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHV  415 (540)
Q Consensus       339 ~~~fnL~~~~P~~~n~~G~~~~~~~~--~~p~L~~l~-isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~  415 (540)
                      ++.|+..+.++.+.+.+|++..++..  ++|.|++++ +++++++|.|||++.|| |+++++|.||++|+++++++++++
T Consensus        48 p~vf~~~~~~~~i~~e~G~i~~l~~~~~~~~~l~~~g~~s~~~~~l~Pgg~~~pH-h~~a~E~~yVl~G~g~v~~v~~~~  126 (445)
T 2cav_A           48 PYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDG  126 (445)
T ss_dssp             TTEECGGGEEEEEEETTEEEEEECCTTSSCSTTGGGTTEEEEEEEECSSEEEEEE-EESSEEEEEEEESEEEEEEEETTE
T ss_pred             CeEEchhhcCceEEcCCEEEEEEeccCcccccccccCcEEEEEEEECCCcCccCc-CCCCceEEEEEeCEEEEEEEeCCC
Confidence            45666666556788899999998653  456899887 99999999999999999 689999999999999999999865


Q ss_pred             CCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecC-CCCEEEEEEEecCCCC---ccccccccc--
Q 040805          416 SRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQ-NNNLEVVCFEINAEGN---IRFPLAGRN--  489 (540)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~-~e~l~~v~F~~~a~~~---~~~~LAG~~--  489 (540)
                                            . ....|++|||++||+|.+||++|.+ +++|+++++.+.++++   ..++|||..  
T Consensus       127 ----------------------~-~~~~l~~GDv~~~P~G~~H~~~N~g~~~~l~~l~v~~~~~~pg~~~~F~laG~~~~  183 (445)
T 2cav_A          127 ----------------------R-DTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRL  183 (445)
T ss_dssp             ----------------------E-EEEEEETTEEEEECTTCCEEEEECCSSCCEEEEEEEECCSSTTCCCEEESSCCSSC
T ss_pred             ----------------------C-EEEEecCCCEEEECCCCcEEEEECCCCCCEEEEEEeccCCCCCceeeeeccCCCch
Confidence                                  2 3468999999999999999999997 7899999865444333   366789873  


Q ss_pred             -cccccCCHHHHHHHcCCCHHHHHHhhc-CCCCceEEcCCC
Q 040805          490 -KIFKVMESEAKELAFNTRADEVERVFG-NQDQDWFFKGPS  528 (540)
Q Consensus       490 -svl~~~~~evla~AF~vs~e~v~kl~~-~q~e~~f~~~~~  528 (540)
                       +||++||++||++||+++.+++++|+. .++..+|++.++
T Consensus       184 ~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~g~Iv~~~~  224 (445)
T 2cav_A          184 PSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMPK  224 (445)
T ss_dssp             CCGGGGSCHHHHHHHHTSCHHHHHHHTTSCCSSSSEEECCC
T ss_pred             hhhhhcCCHHHHHHHhCCCHHHHHhhhcccCCCCcEEEeCC
Confidence             899999999999999999999999995 445679998775

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=99.89  E-value=4.3e-23  Score=219.92  Aligned_cols=166  Identities=16%  Similarity=0.219  Sum_probs=137.3

Q ss_pred             CceeE-cCCCCCcccCCCceEEEecC--CCCCCCcccc-ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCC
Q 040805          339 RGTFN-LFGKRPSHSNNFGELFEADS--NDFRPLEDLD-ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPH  414 (540)
Q Consensus       339 ~~~fn-L~~~~P~~~n~~G~~~~~~~--~~~p~L~~l~-isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~  414 (540)
                      ++.|+ ..+.++.+.+++|++..++.  .+.|.|.+++ +++++++|.|||++.|| |++|++|.||++|+|++++|+++
T Consensus        10 p~~f~~~~~~~~~~~~e~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pH-h~~a~E~~yVl~G~g~v~~v~~~   88 (416)
T 1uij_A           10 PFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVNND   88 (416)
T ss_dssp             TTEECGGGSEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESCEEEEEECSS
T ss_pred             CeEecccccccceEEcCCEEEEEEeccCCccccccCcccEEEEEEEeccCcCcccc-cCCCceEEEEEeeEEEEEEEECC
Confidence            34454 44455689999999999744  3458899987 99999999999999999 68999999999999999999994


Q ss_pred             CCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEec-CCCCEEEEEEEecCCC---Cccccccccc-
Q 040805          415 VSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS-QNNNLEVVCFEINAEG---NIRFPLAGRN-  489 (540)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~-~~e~l~~v~F~~~a~~---~~~~~LAG~~-  489 (540)
                      +                       .....|++|||++||+|.+||++|. ++++|+++++...+++   ...++|+|.. 
T Consensus        89 ~-----------------------~~~~~l~~GDv~~iP~G~~H~~~N~gg~e~l~~l~~~~~~~~pg~~~~f~l~g~~~  145 (416)
T 1uij_A           89 D-----------------------RDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQA  145 (416)
T ss_dssp             C-----------------------EEEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEESSCBSS
T ss_pred             C-----------------------CeEEEecCCCEEEECCCCeEEEEecCCCCCEEEEEEeccCCCCCcceeeeecCCcc
Confidence            3                       2346899999999999999999998 4899999987543323   2456788864 


Q ss_pred             --cccccCCHHHHHHHcCCCHHHHHHhh-cCC-----CCceEEcCCC
Q 040805          490 --KIFKVMESEAKELAFNTRADEVERVF-GNQ-----DQDWFFKGPS  528 (540)
Q Consensus       490 --svl~~~~~evla~AF~vs~e~v~kl~-~~q-----~e~~f~~~~~  528 (540)
                        |||++||++||++||+++.+++++|+ ..+     ...+|++..+
T Consensus       146 ~~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~~~~~~g~Iv~~~~  192 (416)
T 1uij_A          146 QQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSK  192 (416)
T ss_dssp             CCCGGGGSCHHHHHHHHTSCHHHHHHHHTCTTCGGGSBSSSEEECCH
T ss_pred             cchhhhcCCHHHHHHHhCcCHHHHHhhhhccccccccCcceEEEeCC
Confidence              69999999999999999999999999 665     2478998764

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=99.89  E-value=3.4e-22  Score=192.81  Aligned_cols=157  Identities=16%  Similarity=0.194  Sum_probs=133.2

Q ss_pred             CceeEc-CCCCCcccCCCc-eEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCC
Q 040805          339 RGTFNL-FGKRPSHSNNFG-ELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVS  416 (540)
Q Consensus       339 ~~~fnL-~~~~P~~~n~~G-~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~  416 (540)
                      .+.|++ ..+++.++|..| .++.++..++|.|+++++++.+++|.||++..||||++++||+||++|+++++++++...
T Consensus        35 df~~~~~~~~~~~~~~~~G~~v~~~~~~~~p~l~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~  114 (201)
T 1fi2_A           35 DFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDS  114 (201)
T ss_dssp             CTTCCCTTSSCCCCCSTTSEEEEEESTTTCGGGTTSSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGG
T ss_pred             ceEEeeeecCCCCccCCCCcEEEEEecccCCCcccCceEEEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCC
Confidence            457887 667776677656 689999999999999999999999999999999999999999999999999999976400


Q ss_pred             CCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCcccccccccccccc--
Q 040805          417 RSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKV--  494 (540)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~--  494 (540)
                             +            .+.+...|++||+++||+|.+|++.|.+++++.++++... .++....++  .++|..  
T Consensus       115 -------~------------~~~~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~-~~p~~~~~~--~~~~~~~~  172 (201)
T 1fi2_A          115 -------G------------NKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNS-QNPGIVFVP--LTLFGSDP  172 (201)
T ss_dssp             -------T------------TCEEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEESS-SCCCCEEHH--HHHHHCSS
T ss_pred             -------C------------CeEEEEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEECC-CCCCeEehh--hHHhcCCC
Confidence                   0            0455678999999999999999999988889999887544 356666676  468886  


Q ss_pred             -CCHHHHHHHcCCCHHHHHHhhcC
Q 040805          495 -MESEAKELAFNTRADEVERVFGN  517 (540)
Q Consensus       495 -~~~evla~AF~vs~e~v~kl~~~  517 (540)
                       |+++||+++|+++.+++++|++.
T Consensus       173 ~~~~~vl~~af~~~~~~v~~l~~~  196 (201)
T 1fi2_A          173 PIPTPVLTKALRVEAGVVELLKSK  196 (201)
T ss_dssp             CCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHCcCHHHHHHHHHh
Confidence             99999999999999999999864

>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y

Probab=99.88  E-value=1.8e-22  Score=171.52  Aligned_cols=90  Identities=26%  Similarity=0.513  Sum_probs=86.4

Q ss_pred             cceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccc-cccccccCCHHHHHHHcCCCHHHHHHh
Q 040805          436 TYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVMESEAKELAFNTRADEVERV  514 (540)
Q Consensus       436 ~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG-~~svl~~~~~evla~AF~vs~e~v~kl  514 (540)
                      +|++++.+|++|||||||+|||++++|++  +|+||+|.||+++|+++|||| ++|||++||.+||++||+++.+++++|
T Consensus         2 ~~~~~~~~l~~G~v~vVPq~~~v~~~A~~--~le~v~F~tna~~~~~~~LAG~~~Svl~~l~~evla~aF~~s~ee~~~l   79 (93)
T 1dgw_Y            2 QLRRYAATLSEGDIIVIPSSFPVALKAAS--DLNMVGIGVNAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEEL   79 (93)
T ss_dssp             CEEEEEEEECTTCEEEECTTCCEEEEESS--SEEEEEEEESCTTCCEEESSSSTTBSTTTSCHHHHHHHSSSCTHHHHHH
T ss_pred             ccchhhceecCCcEEEECCCCceeEEecC--CeEEEEEEecCCCCeeeeccCCcccHHHhCCHHHHHHHcCCCHHHHHHH
Confidence            48999999999999999999999999984  599999999999999999999 999999999999999999999999999


Q ss_pred             hcCCCCceEEcCC
Q 040805          515 FGNQDQDWFFKGP  527 (540)
Q Consensus       515 ~~~q~e~~f~~~~  527 (540)
                      +.+|++++|+++.
T Consensus        80 ~~~q~e~~~~~~~   92 (93)
T 1dgw_Y           80 LENQKESYFVDGQ   92 (93)
T ss_dssp             TTSCCCCSEECCC
T ss_pred             HhcCCCceeccCC
Confidence            9999999999985

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=99.87  E-value=1.3e-22  Score=167.86  Aligned_cols=76  Identities=34%  Similarity=0.552  Sum_probs=73.8

Q ss_pred             ceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCC
Q 040805          340 GTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHV  415 (540)
Q Consensus       340 ~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~  415 (540)
                      +||||++++|+|+|.+|+++.+++.++|+|+++|||+++++|.||||+.|||||+|++|+||++|+++++||+|++
T Consensus         2 ~pfnl~~~~p~~~n~~G~~~~~~~~~~P~Ln~lgls~~r~~l~~gg~~~PH~hprA~ei~~V~~G~~~v~~V~~~g   77 (79)
T 1dgw_X            2 KPFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQ   77 (79)
T ss_dssp             CCEETTSSCCSEECSSEEEEEECTTTCHHHHTTTEEEEEEEECTTCEEEEEEESSCEEEEEEEESCEEEEEEEEC-
T ss_pred             CccccccCCCCccCCCCcEEEEChhhCcccCcCCcceEEEEEcCCcCcCCccCCCCcEEEEEEeceEEEEEecCCC
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999999987

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=99.84  E-value=2.4e-20  Score=194.96  Aligned_cols=229  Identities=15%  Similarity=0.145  Sum_probs=153.2

Q ss_pred             ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      ..+.++++.+.||+...||+|...+++||++|++.++.|+   ...+.|++||+|+||+|++|++.|.+ +++++++++.
T Consensus        98 ~~l~~~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v~---g~~~~l~~GD~~~iP~g~~H~~~n~~-~~~~~~l~v~  173 (354)
T 2d40_A           98 ATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVD---GERTPMNEGDFILTPQWRWHDHGNPG-DEPVIWLDGL  173 (354)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESSCEEEEEEECSSCEEEET---TEEEECCTTCEEEECTTSCEEEECCS-SSCEEEEEEE
T ss_pred             CcEEEEEEEECCCCCcCCeecCcceEEEEEEEEEEEEEEC---CEEEEEcCCCEEEECCCCcEEeEeCC-CCCEEEEEEE
Confidence            3466778899999999999999999999999999885553   36899999999999999999999998 5689998776


Q ss_pred             ecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCC
Q 040805          257 KSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAG  336 (540)
Q Consensus       257 ~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~  336 (540)
                      ++.    .+..  |..     .+...++.+++..  ..+......++.    +.++.....     ...   .+      
T Consensus       174 d~p----~~~~--l~~-----~~~~~~~~~~~~~--~~p~~~~~~~~~----~~~~p~~~~-----~~~---~s------  222 (354)
T 2d40_A          174 DLP----LVNI--LGC-----GFAEDYPEEQQPV--TRKEGDYLPRYA----ANMLPLRHQ-----TGN---SS------  222 (354)
T ss_dssp             CHH----HHHH--HTC-----CCEEECC--CCCC--CSCTTTHHHHHS----SSEECSSCC-----CCS---SC------
T ss_pred             Cch----hHhh--cCc-----eeeecCccccCcC--cCCcchhhhhhc----cCCCCcccc-----ccC---CC------
Confidence            432    1111  100     1222334333211  112222222221    123322110     000   00      


Q ss_pred             CCCceeEcCC-----------CCCcccCCCceEEEecCC-CCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEec
Q 040805          337 ESRGTFNLFG-----------KRPSHSNNFGELFEADSN-DFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAG  404 (540)
Q Consensus       337 ~~~~~fnL~~-----------~~P~~~n~~G~~~~~~~~-~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G  404 (540)
                       ....|+...           ..+. ...++.+..+++. ..+.+..  |++..+.|.||++..||||+.+ +|.||++|
T Consensus       223 -p~~~y~~~~~~~~l~~~~~~~~~~-~~~G~~~~~~np~t~~~~~~t--i~~~~~~l~pG~~~~~H~h~~~-ev~~v~~G  297 (354)
T 2d40_A          223 -PIFNYRYDRSREVLHDLTRLGDAD-EWDGYKMRYVNPVTGGYPMPS--MGAFLQLLPKGFASRVARTTDS-TIYHVVEG  297 (354)
T ss_dssp             -SCCEECHHHHHHHHHHHHTTSCCB-TTTBEEEEECCTTTSSCSSSS--CEEEEEEECTTCBCCCBEESSC-EEEEEEEE
T ss_pred             -cceeccHHHHHHHHHhhhhccccC-CCCCeEEEEeCCCcCCCCCCc--ceeEEEEECCCCCCCceecCCc-EEEEEEeC
Confidence             012222211           1222 1235577787855 4667664  7777889999999999999988 99999999


Q ss_pred             eEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEE
Q 040805          405 DGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFE  474 (540)
Q Consensus       405 ~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~  474 (540)
                      +|+++|   ++                      ++  ..+++||+|+||++.+|.+.|+  +++.+++|.
T Consensus       298 ~g~~~v---~~----------------------~~--~~~~~GD~~~vP~~~~H~~~n~--e~~~l~~~~  338 (354)
T 2d40_A          298 SGQVII---GN----------------------ET--FSFSAKDIFVVPTWHGVSFQTT--QDSVLFSFS  338 (354)
T ss_dssp             EEEEEE---TT----------------------EE--EEEETTCEEEECTTCCEEEEEE--EEEEEEEEE
T ss_pred             eEEEEE---CC----------------------EE--EEEcCCCEEEECCCCeEEEEeC--CCEEEEEEc
Confidence            999998   22                      33  4799999999999999999985  578888883

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=99.81  E-value=7.7e-19  Score=183.24  Aligned_cols=250  Identities=14%  Similarity=0.122  Sum_probs=158.6

Q ss_pred             eeCCCcccc---ccccC-CCeEEEEEeeEEEEEEEe-cCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecC
Q 040805          185 IANPQTFVT---PTHLD-ADAVFFVSWGQGTITVIR-ENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSI  259 (540)
Q Consensus       185 ~l~Pggl~~---Ph~~~-A~ei~yV~~G~g~ig~V~-~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~  259 (540)
                      .+.|++...   ||||. .+|++||++|++.+.+-. ++...++.|++||+++||+|++|++.|.++ +. +++.++.+.
T Consensus        53 ~~~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H~~~n~~~-~~-~~l~v~~p~  130 (350)
T 1juh_A           53 TNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDP-DT-EMTGVIVPG  130 (350)
T ss_dssp             EEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECST-TE-EEEEEEESS
T ss_pred             EEcCCCCCCCCccccCCCceEEEEEEEEEEEEEECCcCCceEEEEECCCCEEEECCCCcEEEEeCCC-CC-EEEEEEcCc
Confidence            566776555   78886 899999999999998754 333478999999999999999999999874 34 777776543


Q ss_pred             CCCCcccccccCCCCCcccccccCCHHHHHHhcCCCH--HHHHHHhc-cCCCCcEEEccchhhhccCCCCCCCCcCCCCC
Q 040805          260 NLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKR--DSLERVLF-QQDQGAMVKASKQQIRALSRSQEGPSIWPFAG  336 (540)
Q Consensus       260 ~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~--~~v~~l~~-~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~  336 (540)
                          .+..||...+....+.++   ..++..+|+...  ..++++.. .+..++++..+.++++.|.... +.+   ...
T Consensus       131 ----~~~~~f~~l~~~~~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-a~~---~~~  199 (350)
T 1juh_A          131 ----GFEDLFYYLGTNATDTTH---TPYIPSSSDSSSTTGPDSSTISTLQSFDVYAELSFTPRTDTVNGT-APA---NTV  199 (350)
T ss_dssp             ----CTTHHHHHHSEECCCTTC---CSSCCC--------------CGGGGGGTCEECTTCCCCCCCBTTE-ESS---SSC
T ss_pred             ----cHHHHHHHhccccccccc---cccCCcccccCccccCHHHHHHHHHHcCCEeccccCChhHhhccc-ccc---CCc
Confidence                355555432221112221   222234444433  44556654 3445788877766666554221 111   111


Q ss_pred             CCCceeE-cC-CCCCcc-cCCCceEEEecC----------CCCCCCccccceEEEEEEcCC--CcccccccCCCcEEEEE
Q 040805          337 ESRGTFN-LF-GKRPSH-SNNFGELFEADS----------NDFRPLEDLDITVSYANISKG--AMAAPFYNSRSTKVAVV  401 (540)
Q Consensus       337 ~~~~~fn-L~-~~~P~~-~n~~G~~~~~~~----------~~~p~L~~l~isv~~~~L~pg--gm~~PH~h~~A~ei~yV  401 (540)
                      ....+++ |. +.+|.| +++.|..+ .+.          ...+..+.+.+++..+++.++  |...|+|+...++++||
T Consensus       200 w~~~~~~~l~~~~~p~~~~~~~g~~~-~~~~~g~v~~~~l~~~~~~~~~~f~~~~i~~~~~~~g~~~~~h~~~~~~~~~v  278 (350)
T 1juh_A          200 WHTGANALASTAGDPYFIANGWGPKY-LNSQYGYQIVAPFVTATQAQDTNYTLSTISMSTTPSTVTVPTWSFPGACAFQV  278 (350)
T ss_dssp             SSSSCCCCCSSTTCCEEECTTCSCEE-EECTTSCEEEEEEECHHHHGGGCEEEEEEEECCCCTTSCCCCBCCSSCEEEEE
T ss_pred             cccCcccccCCCCCceEECCCccchh-hcccCCcEEEEEEEeCCcCceeEEEEEEEeeccccCCCCCCcccCCCcEEEEE
Confidence            2234777 54 567866 66766432 211          112344545678999999884  66777777899999999


Q ss_pred             EeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEe
Q 040805          402 VAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEI  475 (540)
Q Consensus       402 ~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~  475 (540)
                      ++|++.++|-...                        .  ..|++||+++||+|.+|.+.|.++. ..++.+..
T Consensus       279 leG~~~i~i~g~~------------------------~--~~l~~Gd~~~iPag~~h~~~~~~~~-~~~l~~~~  325 (350)
T 1juh_A          279 QEGRVVVQIGDYA------------------------A--TELGSGDVAFIPGGVEFKYYSEAYF-SKVLFVSS  325 (350)
T ss_dssp             EESCEEEEETTSC------------------------C--EEECTTCEEEECTTCCEEEEESSSS-EEEEEEEE
T ss_pred             EeeEEEEEECCeE------------------------E--EEeCCCCEEEECCCCCEEEEecCCe-EEEEEEec
Confidence            9999999986521                        1  3799999999999999999987543 56666643

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=99.79  E-value=1.3e-18  Score=180.95  Aligned_cols=158  Identities=11%  Similarity=0.068  Sum_probs=130.9

Q ss_pred             CceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCC
Q 040805          339 RGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRS  418 (540)
Q Consensus       339 ~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~  418 (540)
                      +..|++.+.+|. .+.+|+++.++..++|.+.  ++++.++.|.||++..||||+++.++.||++|+++++++++++.  
T Consensus        20 ~~~~~~~~~~~~-~~~~G~~~~~~~~~~p~~~--~~~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~--   94 (361)
T 2vqa_A           20 AFTYAFSKTPLV-LYDGGTTKQVGTYNFPVSK--GMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGK--   94 (361)
T ss_dssp             CSEECGGGSCCE-EETTEEEEEESTTTCTTCC--SCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSC--
T ss_pred             ceEEEcccCCce-ecCCceEEEeChhhCcccc--ceeeEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCc--
Confidence            468888888775 5689999999999999887  57999999999999999999999999999999999999998652  


Q ss_pred             cccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCCHH
Q 040805          419 SSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESE  498 (540)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~e  498 (540)
                                          .....|++||+++||+|.+|++.|.++++++++.+.... +...+...+.+++|+++|.+
T Consensus        95 --------------------~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~p~~  153 (361)
T 2vqa_A           95 --------------------VEIADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDG-TFSEGATFSVTDWLSHTPIA  153 (361)
T ss_dssp             --------------------EEEEEEETTEEEEECTTCEEEEEECSSSCEEEEEEESST-TCCTTSSEEHHHHHHTSCHH
T ss_pred             --------------------EEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEECCC-CccccceecHhHHHHhCCHH
Confidence                                122589999999999999999999988899998764443 22211111236899999999


Q ss_pred             HHHHHcCCCHHHHHHhhcCCCCceEE
Q 040805          499 AKELAFNTRADEVERVFGNQDQDWFF  524 (540)
Q Consensus       499 vla~AF~vs~e~v~kl~~~q~e~~f~  524 (540)
                      +|+++|+++.+.+++|...+.  .|+
T Consensus       154 vLa~~~~v~~~~~~~l~~~~~--~i~  177 (361)
T 2vqa_A          154 WVEENLGWTAAQVAQLPKKQV--YIS  177 (361)
T ss_dssp             HHHHHHTCCHHHHTTSCSSCC--CEE
T ss_pred             HHHHHhCcCHHHHHhccccCc--eEE
Confidence            999999999999999987653  466

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=99.78  E-value=1.4e-17  Score=170.74  Aligned_cols=242  Identities=10%  Similarity=0.062  Sum_probs=147.0

Q ss_pred             cceeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          178 KYRLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      .+.+.++.+.||+...+|||. ..+++||++|++.+.+    +..++.|++||+++||+|++|.+.|.++  +++++.++
T Consensus        45 ~~~~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~----~~~~~~l~~Gd~~~~p~~~~H~~~n~~~--~~~~~~~~  118 (337)
T 1y3t_A           45 LFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL----DGERYLLISGDYANIPAGTPHSYRMQSH--RTRLVSYT  118 (337)
T ss_dssp             SEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE----TTEEEEECTTCEEEECTTCCEEEEECST--TEEEEEEE
T ss_pred             eEEEEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEE----CCEEEEECCCCEEEECCCCcEEEEECCC--CeEEEEEE
Confidence            456667799999988889887 9999999999999987    4567999999999999999999999873  58888777


Q ss_pred             ecCCCCCcccccccCCCCCcccccccC-CHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCC-
Q 040805          257 KSINLPGQYEAFYGAGGENPESFLRAF-SWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPF-  334 (540)
Q Consensus       257 ~~~~~pg~~~~f~LaG~~~~~s~l~~f-~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~-  334 (540)
                      .+.    .+..||.....   .+-+.. |..+..   ..+.+.+.++...  .++.+ ........+++.      |.. 
T Consensus       119 ~p~----~~~~~~~~~~~---~~~~~~~p~~~~~---~~~~~~l~~~a~~--~gv~~-~~~~~~~~~~~~------~~~~  179 (337)
T 1y3t_A          119 MKG----NVAHLYSVIGN---PYDHAEHPPYASE---EVSNERFAEAAAV--ATIVF-LDEAKPACSAKL------AELT  179 (337)
T ss_dssp             ETT----SSTHHHHHHSE---ECSCSSCCSSCCC---CCTTCTTGGGTSS--CEECC-CCCCCSSCSCEE------CCBC
T ss_pred             CCC----CHHHHHHHhCc---ccccccCCCCCCc---ccCHHHHHHhHhh--ccEEE-cCCCCccccccc------hhhh
Confidence            654    34444432221   111111 110000   0111111111111  12211 111111111110      100 


Q ss_pred             -CCCCCceeEcCCC-CCcccCCCceEEEecCCCCCCCccccceEEEEEEcC-CCcccccccCCCcEEEEEEeceEEEEEE
Q 040805          335 -AGESRGTFNLFGK-RPSHSNNFGELFEADSNDFRPLEDLDITVSYANISK-GAMAAPFYNSRSTKVAVVVAGDGYIEIA  411 (540)
Q Consensus       335 -~~~~~~~fnL~~~-~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~p-ggm~~PH~h~~A~ei~yV~~G~g~v~vv  411 (540)
                       ......++.++.. .+.+...+..+..+.+.   ......+ +..+.+.| |+...+|||+.+.+++||++|++.+.+ 
T Consensus       180 ~l~~~~~~~v~r~~~~~~~~~~g~~~~~l~~~---~~~~~~~-~~~~~~~p~g~~~~~h~H~~~~e~~~vl~G~~~~~i-  254 (337)
T 1y3t_A          180 ELPDGAVPYVLESGEGDRLLTGDQLHRIVAAQ---KNTDGQF-IVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT-  254 (337)
T ss_dssp             SCCSSSCCEEECTTCSEEEEETTEEEEEEECG---GGTTTSC-EEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEE-
T ss_pred             cCCCCCCCEEECCCCcCEEEECCcEEEEEecc---cccCCcE-EEEEEEcCCCCCCCCcCCCCCcEEEEEEeCEEEEEE-
Confidence             0111234444432 23344444455555432   1122223 44556666 677789999889999999999999987 


Q ss_pred             cCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEec
Q 040805          412 CPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEIN  476 (540)
Q Consensus       412 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~  476 (540)
                        ++                      +.  ..|++||+++||++.+|++.|.++ ++.++.+.+.
T Consensus       255 --~~----------------------~~--~~l~~GD~~~ip~~~~H~~~n~~~-~~~~l~v~~~  292 (337)
T 1y3t_A          255 --DG----------------------QE--IQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVLVP  292 (337)
T ss_dssp             --TT----------------------EE--EEECTTCEEEECTTCCEEEEECSS-SEEEEEEEES
T ss_pred             --CC----------------------EE--EEECCCCEEEECCCCeEEEEECCC-CeEEEEEEcC
Confidence              22                      23  479999999999999999999877 7888776433

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=99.75  E-value=1.2e-17  Score=161.05  Aligned_cols=139  Identities=15%  Similarity=0.149  Sum_probs=109.0

Q ss_pred             cCCceEEEeccCccccccccccccceeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEecC----CceEEeeCCCc
Q 040805          155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIREN----NRESYNVKRGD  229 (540)
Q Consensus       155 ~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~----~~~~~~l~~GD  229 (540)
                      ..++.++.+.  ....|.|.+. .+.++.+++.||++..||||. ++|++||++|++++++++++    ...++.|++||
T Consensus        51 ~~G~~v~~~~--~~~~p~l~~~-~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD  127 (201)
T 1fi2_A           51 PNGSAVTELD--VAEWPGTNTL-GVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGE  127 (201)
T ss_dssp             TTSEEEEEES--TTTCGGGTTS-SCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTC
T ss_pred             CCCcEEEEEe--cccCCCcccC-ceEEEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCC
Confidence            3456688873  3445666632 234445599999999999986 78999999999999998763    33489999999


Q ss_pred             EEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCccccccc---CCHHHHHHhcCCCHHHHHHHhccC
Q 040805          230 IIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRA---FSWEILESAFKTKRDSLERVLFQQ  306 (540)
Q Consensus       230 v~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~---f~~evLa~Af~v~~~~v~~l~~~q  306 (540)
                      +++||+|++|++.|.+ ++++++++++ ++.+|+.+   .++     .++|++   |+++||++||+++.+++++|++..
T Consensus       128 ~~~iP~g~~H~~~N~g-~~~~~~l~v~-~~~~p~~~---~~~-----~~~~~~~~~~~~~vl~~af~~~~~~v~~l~~~~  197 (201)
T 1fi2_A          128 TFVIPRGLMHFQFNVG-KTEAYMVVSF-NSQNPGIV---FVP-----LTLFGSDPPIPTPVLTKALRVEAGVVELLKSKF  197 (201)
T ss_dssp             EEEECTTCCEEEEECS-SSCEEEEEEE-SSSCCCCE---EHH-----HHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHHS
T ss_pred             EEEECCCCeEEEEeCC-CCCEEEEEEE-CCCCCCeE---ehh-----hHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHhh
Confidence            9999999999999998 4689999888 44456532   232     257776   999999999999999999998764

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=99.70  E-value=9.7e-16  Score=153.06  Aligned_cols=190  Identities=12%  Similarity=0.113  Sum_probs=130.7

Q ss_pred             eeeeeeeCCCccccccc-c-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          180 RLGILIANPQTFVTPTH-L-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       180 rl~~~~l~Pggl~~Ph~-~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      -+.++++.||+-..+|+ + .+++++||++|++.+.+    +..++.|++||.+++|+|.+|.+.|.+ +++++++++..
T Consensus        60 ~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~----~~~~~~L~~Gd~~~~~~~~~H~~~N~~-~~~~~~l~v~~  134 (261)
T 1rc6_A           60 VDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA----EGKTFALSEGGYLYCPPGSLMTFVNAQ-AEDSQIFLYKR  134 (261)
T ss_dssp             EEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE----TTEEEEEETTEEEEECTTCCCEEEECS-SSCEEEEEEEE
T ss_pred             EEEEEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEE----CCEEEEECCCCEEEECCCCCEEEEeCC-CCCEEEEEEEe
Confidence            34455999998765443 3 47899999999999988    567899999999999999999999997 56898887764


Q ss_pred             cCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCCC
Q 040805          258 SINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGE  337 (540)
Q Consensus       258 ~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~  337 (540)
                      ....        +.|          .                      ....+++...  +   +.+.            
T Consensus       135 ~~~~--------~~g----------~----------------------~p~~~v~~~~--~---~~~~------------  157 (261)
T 1rc6_A          135 RYVP--------VEG----------Y----------------------APWLVSGNAS--E---LERI------------  157 (261)
T ss_dssp             ECCC--------CTT----------C----------------------CCCCEEEEGG--G---SCCC------------
T ss_pred             cccc--------CCC----------C----------------------CCceEEcCHH--H---CCcc------------
Confidence            3221        001          0                      0011233221  1   1110            


Q ss_pred             CCceeEcCCCCCcccCCCc-eEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCC
Q 040805          338 SRGTFNLFGKRPSHSNNFG-ELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVS  416 (540)
Q Consensus       338 ~~~~fnL~~~~P~~~n~~G-~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~  416 (540)
                                  .+...+| .++.+.+.+.    ..++.+..++|.||+...+|||+...+++||++|++.+.+   ++ 
T Consensus       158 ------------~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i---~~-  217 (261)
T 1rc6_A          158 ------------HYEGMDDVILLDFLPKEL----GFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNL---DN-  217 (261)
T ss_dssp             -------------------CEEEECSCCST----TCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEES---SS-
T ss_pred             ------------cCCCCcceEEEEecCccc----CCceEEEEEEECCCCccCcccCCCceEEEEEEEeEEEEEE---CC-
Confidence                        0001112 2222322211    3367889999999999999999888999999999999874   22 


Q ss_pred             CCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCC-CCEEEEEEE
Q 040805          417 RSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQN-NNLEVVCFE  474 (540)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~-e~l~~v~F~  474 (540)
                                           +.  ..|++||+++||+|.+|++.|.++ +++.++.+.
T Consensus       218 ---------------------~~--~~l~~GD~i~~~~~~~H~~~n~g~~~~~~~l~~~  253 (261)
T 1rc6_A          218 ---------------------NW--IPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSK  253 (261)
T ss_dssp             ---------------------CE--EEEETTCEEEECSSEEEEEEEC----CEEEEEEE
T ss_pred             ---------------------EE--EEeCCCCEEEECCCCcEEeEeCCCCcCEEEEEEe
Confidence                                 22  379999999999999999999888 899988763

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=99.69  E-value=1.2e-15  Score=161.00  Aligned_cols=240  Identities=13%  Similarity=0.087  Sum_probs=143.3

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe-CCCCccEEEEEEe
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN-TDDDEKLYIVKFI  256 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N-~g~~e~l~~v~i~  256 (540)
                      .+-+++..|.||....+|.|...+++||++|+|.++.|   +..++.+++||+|++|+|..|.+.| +| +++|+++++.
T Consensus       122 ~L~a~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v---~G~~~~~~~GD~i~~P~g~~H~~~N~~g-de~l~~l~v~  197 (394)
T 3bu7_A          122 WLFSGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIV---DGHKVELGANDFVLTPNGTWHEHGILES-GTECIWQDGL  197 (394)
T ss_dssp             TBEEEEEEECTTCBCCCEEESSCEEEEEEECSCEEEEE---TTEEEEECTTCEEEECTTCCEEEEECTT-CCCEEEEEEE
T ss_pred             eeEEEEEEECCCCCcCCccCCcceEEEEEEeeEEEEEE---CCEEEEEcCCCEEEECcCCCEEEEcCCC-CCCEEEEEcc
Confidence            45567889999999999989888999999999977554   4467899999999999999999999 87 5799999877


Q ss_pred             ecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhc-cCCCCCCCCcCCCC
Q 040805          257 KSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRA-LSRSQEGPSIWPFA  335 (540)
Q Consensus       257 ~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~-l~~~~~~~s~~~~~  335 (540)
                      +-.-    + . +| +.    .++...+... . .-..+...-....   ..+.+..... ..+. -+|.    -.|++.
T Consensus       198 d~Pl----~-~-~l-~~----~f~e~~~~~~-~-~~~~~~~~~~~~~---~~~~l~p~~~-~~~~~~sP~----~~y~w~  256 (394)
T 3bu7_A          198 DIPL----T-N-CL-EA----NFYEVHPNDY-Q-TTDIPLNDSPLTY---GGPALLPQLD-KWDKPYSPL----LKYSWE  256 (394)
T ss_dssp             CHHH----H-H-HT-TC----CCEEECTTSS-C-CCCCCTTHHHHHH---CSTTEEESSC-CCCCSSCSC----CEECHH
T ss_pred             cchh----h-h-hc-Cc----cccccCcccc-c-CccCCccchhhhh---cCcccccccc-cccCCCCCc----EEecHH
Confidence            4211    0 0 11 00    1111111000 0 0000000001111   1122222210 0000 0000    001110


Q ss_pred             CCCCceeEcCC--CCCcccCCCc-eEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEc
Q 040805          336 GESRGTFNLFG--KRPSHSNNFG-ELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIAC  412 (540)
Q Consensus       336 ~~~~~~fnL~~--~~P~~~n~~G-~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~  412 (540)
                      .-..   .|..  ....-....| .+..+++.+-... ...|++....|.||+...||.|+.+ ++.||++|+|.+.|  
T Consensus       257 ~~~~---~L~~~~~~~~~~~~~~~~l~l~nP~~g~~~-~~tl~~~~~~l~PG~~~~~HrH~~~-~v~~VleG~G~~~V--  329 (394)
T 3bu7_A          257 PTYE---ALLNYAKASDGSPYDGLILRYTNPQTGGHP-MLTMGASMQMLRPGEHTKAHRHTGN-VIYNVAKGQGYSIV--  329 (394)
T ss_dssp             HHHH---HHHHHHTTCCCBTTTBEEEEECCTTTSSCS-SSSCEEEEEEECTTCBCCCEEESSC-EEEEEEECCEEEEE--
T ss_pred             HHHH---HHHHhhhccCcCcCCceEEEEeCCCCCCCC-CCeeeEEEEEECCCCcCCCcccCCc-EEEEEEeCeEEEEE--
Confidence            0000   0000  0000111223 3344444321111 2258899999999999999999854 79999999997765  


Q ss_pred             CCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecC-CCCEEEEEEE
Q 040805          413 PHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQ-NNNLEVVCFE  474 (540)
Q Consensus       413 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~-~e~l~~v~F~  474 (540)
                       ++                      ++  ..+++||+|+||+|..|.+.|.+ ++++.++++.
T Consensus       330 -~g----------------------e~--~~~~~GD~~~iP~g~~H~~~N~g~~e~~~ll~i~  367 (394)
T 3bu7_A          330 -GG----------------------KR--FDWSEHDIFCVPAWTWHEHCNTQERDDACLFSFN  367 (394)
T ss_dssp             -TT----------------------EE--EEECTTCEEEECTTCCEEEEECCSSCCEEEEEEE
T ss_pred             -CC----------------------EE--EEEeCCCEEEECCCCeEEeEeCCCCCCeEEEEee
Confidence             22                      33  37999999999999999999987 7889998884

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=99.66  E-value=1.2e-14  Score=146.34  Aligned_cols=188  Identities=15%  Similarity=0.136  Sum_probs=132.3

Q ss_pred             eeeeeeCCCcccccc-c-cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeec
Q 040805          181 LGILIANPQTFVTPT-H-LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKS  258 (540)
Q Consensus       181 l~~~~l~Pggl~~Ph-~-~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~  258 (540)
                      +.++++.||+-..++ | +.+++++||++|++.+.+    +.+++.|++||.+++|+|.+|.+.|.+ +++++++.+...
T Consensus        64 ~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~----~~~~~~L~~GD~~~~~~~~~H~~~N~~-~~~~~~l~v~~~  138 (274)
T 1sef_A           64 DYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSD----GQETHELEAGGYAYFTPEMKMYLANAQ-EADTEVFLYKKR  138 (274)
T ss_dssp             EEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEEC----SSCEEEEETTEEEEECTTSCCEEEESS-SSCEEEEEEEEE
T ss_pred             EEEEEECCCCcCCCCCCCCCceEEEEEEEeEEEEEE----CCEEEEECCCCEEEECCCCCEEEEeCC-CCCEEEEEEEee
Confidence            445599999876543 3 357899999999999887    556899999999999999999999998 568888877632


Q ss_pred             CCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCCCC
Q 040805          259 INLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGES  338 (540)
Q Consensus       259 ~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~~  338 (540)
                      .. |       +.|                     +           .....+++..  +   +.+.             
T Consensus       139 y~-~-------~~g---------------------~-----------~p~~~v~~~~--d---~~~~-------------  160 (274)
T 1sef_A          139 YQ-P-------LAG---------------------H-----------QPYKVVGSIH--D---QQPE-------------  160 (274)
T ss_dssp             CC-C-------CTT---------------------C-----------CCCCEEEEGG--G---SCCE-------------
T ss_pred             ee-e-------CCC---------------------C-----------CCcceeCChH--H---CCcc-------------
Confidence            21 0       000                     0           0112333332  1   1110             


Q ss_pred             CceeEcCCCCCcccC-CCceEEEecCCCCCCCccccceEEEEEEcCCCcccc-cccCCCcEEEEEEeceEEEEEEcCCCC
Q 040805          339 RGTFNLFGKRPSHSN-NFGELFEADSNDFRPLEDLDITVSYANISKGAMAAP-FYNSRSTKVAVVVAGDGYIEIACPHVS  416 (540)
Q Consensus       339 ~~~fnL~~~~P~~~n-~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~P-H~h~~A~ei~yV~~G~g~v~vv~p~~~  416 (540)
                          .       +.. .+..+..+.+...    ..++.+..++|.||+...+ |||+ ..+++||++|++.+.+   ++ 
T Consensus       161 ----~-------~~~~~g~~~~~l~~~~~----~~~~~~~~~~l~pg~~~~~~H~H~-~~E~~yVl~G~~~~~i---~~-  220 (274)
T 1sef_A          161 ----E-------YEGMTDVLLWSLLPKEF----DFDMNMHILSFEPGASHAYIETHV-QEHGAYLISGQGMYNL---DN-  220 (274)
T ss_dssp             ----E-------GGGCTTEEEEECSCSST----TCSEEEEEEEECTTCBCSSCBCCS-CCEEEEEEECEEEEEE---TT-
T ss_pred             ----c-------cCCCCCeEEEEeCCccc----CCCEEEEEEEECCCCccCcceecc-CeEEEEEEeCEEEEEE---CC-
Confidence                0       111 1223333333221    2368899999999999988 9995 6799999999999986   22 


Q ss_pred             CCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCC-CCEEEEEEE
Q 040805          417 RSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQN-NNLEVVCFE  474 (540)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~-e~l~~v~F~  474 (540)
                                           +.  ..|++||+++||++.+|++.|.++ +++.++++.
T Consensus       221 ---------------------~~--~~l~~GD~i~i~~~~~H~~~n~~~~~~~~~l~~~  256 (274)
T 1sef_A          221 ---------------------EW--YPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSK  256 (274)
T ss_dssp             ---------------------EE--EEEETTCEEEECTTCCEEEEEECSSSCEEEEEEE
T ss_pred             ---------------------EE--EEECCCCEEEECCCCCEEEEeCCCCCCEEEEEEE
Confidence                                 22  379999999999999999999888 889988764

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=99.64  E-value=2e-14  Score=140.87  Aligned_cols=186  Identities=13%  Similarity=0.227  Sum_probs=126.9

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      ...+.++.+.||+...+|.|..++++||++|++.+++    +..++.|++||++++|+|++|.+.|..   +++++.+..
T Consensus        36 ~~~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i----~~~~~~l~~Gd~~~~p~~~~H~~~a~~---~~~~l~i~~  108 (227)
T 3rns_A           36 NSYISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI----ENNKKTISNGDFLEITANHNYSIEARD---NLKLIEIGE  108 (227)
T ss_dssp             SEEEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE----SSCEEEEETTEEEEECSSCCEEEEESS---SEEEEEEEE
T ss_pred             CcEEEEEEECCCCccCccccCCCEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCCEEEEECC---CcEEEEEEe
Confidence            4467778999999988888899999999999999998    456799999999999999999999964   588887763


Q ss_pred             cCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCCC
Q 040805          258 SINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGE  337 (540)
Q Consensus       258 ~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~  337 (540)
                      .-. +    .++  ++                       +.++.|..    +.                           
T Consensus       109 ~~~-~----~~~--~~-----------------------~~~~~l~~----~~---------------------------  127 (227)
T 3rns_A          109 KIG-D----GNM--EN-----------------------KTLKMLES----AS---------------------------  127 (227)
T ss_dssp             CC--------------------------------------------------C---------------------------
T ss_pred             ecc-c----chh--hh-----------------------hHhhcCCc----cc---------------------------
Confidence            110 0    000  00                       00111110    11                           


Q ss_pred             CCceeEcCCCCCcccCCCce-EEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCC
Q 040805          338 SRGTFNLFGKRPSHSNNFGE-LFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVS  416 (540)
Q Consensus       338 ~~~~fnL~~~~P~~~n~~G~-~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~  416 (540)
                         .|++.+..+ |. .++. ...+-       .+-++.+..+.+.||+...+|||+ ..+++||++|++.+.+   ++ 
T Consensus       128 ---~~~~~d~~~-~~-~g~~~~~~l~-------~~~~~~~~~~~~~~G~~~~~H~H~-~~e~~~Vl~G~~~~~i---~g-  190 (227)
T 3rns_A          128 ---AFNLAEVVE-YQ-EGKIVSKNLV-------AKPNLVMTIMSFWKGESLDPHKAP-GDALVTVLDGEGKYYV---DG-  190 (227)
T ss_dssp             ---CEESGGGSC-CC-TTCEEEEEEE-------EETTEEEEEEEECTTCEEEEECCS-SEEEEEEEEEEEEEEE---TT-
T ss_pred             ---cCcHHHccc-cC-CCCEEEEEEE-------ECCCeEEEEEEECCCCccCCEECC-CcEEEEEEeEEEEEEE---CC-
Confidence               122222212 21 1221 11111       122578889999999999999997 6789999999999975   12 


Q ss_pred             CCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEE
Q 040805          417 RSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVC  472 (540)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~  472 (540)
                                           +.  ..|++||.++||+|.+|++.|. .+++.++.
T Consensus       191 ---------------------~~--~~l~~Gd~i~ip~~~~H~~~~~-~~~~~~ll  222 (227)
T 3rns_A          191 ---------------------KP--FIVKKGESAVLPANIPHAVEAE-TENFKMLL  222 (227)
T ss_dssp             ---------------------EE--EEEETTEEEEECTTSCEEEECC-SSCEEEEE
T ss_pred             ---------------------EE--EEECCCCEEEECCCCcEEEEeC-CCCEEEEE
Confidence                                 22  4799999999999999999983 34565543

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=99.64  E-value=8.8e-16  Score=161.22  Aligned_cols=150  Identities=13%  Similarity=0.159  Sum_probs=122.6

Q ss_pred             ceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCc
Q 040805          340 GTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSS  419 (540)
Q Consensus       340 ~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~  419 (540)
                      ..|++.+.+|. ...+|+++.++...+|.+.  ++++.++.|.||++..||||+ +.+|+||++|++++++++.++    
T Consensus        48 ~~~~~~~~~~~-~~~~G~~~~~~~~~lp~~~--~~~~~~~~l~pg~~~~~H~H~-~~E~~~Vl~G~~~~~~~~~~g----  119 (385)
T 1j58_A           48 MKFSFSDTHNR-LEKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHK-EAEWAYMIYGSARVTIVDEKG----  119 (385)
T ss_dssp             CEECGGGSCCE-EETTEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEES-SCEEEEEEEEEEEEEEECTTS----
T ss_pred             eEEEcccCCcc-ccCCcEEEEeccccCcccC--ceEEEEEEECCCCCCCCccCC-hheEEEEEeeeEEEEEEeCCC----
Confidence            57888888874 4689999999999999987  799999999999999999998 899999999999999998765    


Q ss_pred             ccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEE-EEecCCCCccccccccccccccCCHH
Q 040805          420 SERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVC-FEINAEGNIRFPLAGRNKIFKVMESE  498 (540)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~-F~~~a~~~~~~~LAG~~svl~~~~~e  498 (540)
                                        +.+...|++||+++||+|.+|++.|.+ +++.|+. |+...-.....++  ..++|..+|.+
T Consensus       120 ------------------~~~~~~l~~GD~~~ip~g~~H~~~n~~-~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~p~e  178 (385)
T 1j58_A          120 ------------------RSFIDDVGEGDLWYFPSGLPHSIQALE-EGAEFLLVFDDGSFSENSTFQ--LTDWLAHTPKE  178 (385)
T ss_dssp             ------------------CEEEEEEETTEEEEECTTCCEEEEEEE-EEEEEEEEESCTTCCGGGEEE--HHHHHHTSCHH
T ss_pred             ------------------cEEEEEeCCCCEEEECCCCeEEEEECC-CCEEEEEEECCCCccccchhh--hhhhhhcccHH
Confidence                              333358999999999999999999975 4577776 4322111111122  26899999999


Q ss_pred             HHHHHcCCCHHHHHHhhcCC
Q 040805          499 AKELAFNTRADEVERVFGNQ  518 (540)
Q Consensus       499 vla~AF~vs~e~v~kl~~~q  518 (540)
                      +|+.+|+++.+++++|...+
T Consensus       179 vla~~~~vs~~~~~~l~~~~  198 (385)
T 1j58_A          179 VIAANFGVTKEEISNLPGKE  198 (385)
T ss_dssp             HHHHHHTCCTGGGTTSCSSC
T ss_pred             HHHHHhCCCHHHHHhccccc
Confidence            99999999999999987643

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=99.63  E-value=7.6e-14  Score=140.08  Aligned_cols=191  Identities=10%  Similarity=0.065  Sum_probs=136.7

Q ss_pred             ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCC-ceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805          177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENN-RESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~-~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i  255 (540)
                      ..+.+.+++|.||+...+|++.+++++||++|++++.+    + ..++.|++||.+++|+|..|++.|.   ++++++.+
T Consensus        68 ~~f~~~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l----~~g~~~~L~~Gds~y~p~~~~H~~~N~---~~Ar~l~V  140 (266)
T 4e2q_A           68 SHFVMYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTN----TSSSSKKLTVDSYAYLPPNFHHSLDCV---ESATLVVF  140 (266)
T ss_dssp             CSSEEEEEEECSSEECCCCCTTEEEEEEEEEECEEEEC------CCCEEECTTEEEEECTTCCCEEEES---SCEEEEEE
T ss_pred             CcEEEEEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEE----CCCcEEEEcCCCEEEECCCCCEEEEeC---CCEEEEEE
Confidence            34556677999999877777789999999999998887    3 5679999999999999999999995   36887766


Q ss_pred             eecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCC
Q 040805          256 IKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFA  335 (540)
Q Consensus       256 ~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~  335 (540)
                      ..... |       +.|                                 .....||.-    +..+.+.          
T Consensus       141 ~k~y~-~-------~~g---------------------------------~~p~~~v~~----~~dv~~~----------  165 (266)
T 4e2q_A          141 ERRYE-Y-------LGS---------------------------------HTTELIVGS----TDKQPLL----------  165 (266)
T ss_dssp             EEECC-C-------CTT---------------------------------CCCCCEEEE----GGGSCCB----------
T ss_pred             EeEee-e-------CCC---------------------------------CCCceeeCc----HhHCCCc----------
Confidence            53221 1       111                                 011233321    1122211          


Q ss_pred             CCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccc-cccCCCcEEEEEEeceEEEEEEcCC
Q 040805          336 GESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAP-FYNSRSTKVAVVVAGDGYIEIACPH  414 (540)
Q Consensus       336 ~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~P-H~h~~A~ei~yV~~G~g~v~vv~p~  414 (540)
                           +         +...+-.+..+.+.+.    ..++.+..++++|||.... |.| ...+.+||++|+|.+.+   +
T Consensus       166 -----~---------~~g~~~~~r~l~p~~~----~~d~~~~~~t~~PG~~~p~~e~H-~~eh~~~vL~G~g~y~l---~  223 (266)
T 4e2q_A          166 -----E---------TPGEVFELRKLLPMSV----AYDFNIHTMDFQPGEFLNVKEVH-YNQHGLLLLEGQGIYRL---G  223 (266)
T ss_dssp             -----C---------CTTCCSEEEESSCCST----TCSEEEEEEEECTTCBCSSCCCC-SCCEEEEEEECEEEEEE---T
T ss_pred             -----c---------cCCCcEEEEEccCccc----ccceEEEEEEECCCcCcCCceEc-ccceEEEEEeceEEEEE---C
Confidence                 0         1111123555555543    4479999999999999987 555 45589999999999873   1


Q ss_pred             CCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEe
Q 040805          415 VSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEI  475 (540)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~  475 (540)
                      +                      ..  ..|++||++++|++.+|++.|.|++++.++-...
T Consensus       224 ~----------------------~~--~~V~~GD~i~~~~~~~h~~~n~G~e~~~yl~ykd  260 (266)
T 4e2q_A          224 D----------------------NW--YPVQAGDVIWMAPFVPQWYAALGKTRSRYLLYKD  260 (266)
T ss_dssp             T----------------------EE--EEEETTCEEEECTTCCEEEEEESSSCEEEEEEEE
T ss_pred             C----------------------EE--EEecCCCEEEECCCCcEEEEeCCCCCEEEEEEcc
Confidence            1                      12  4799999999999999999999999999987743

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=99.61  E-value=3e-14  Score=140.89  Aligned_cols=184  Identities=11%  Similarity=0.132  Sum_probs=128.3

Q ss_pred             eeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEE-ECCCCeEEEEeCCCCccEEEEEEeec
Q 040805          180 RLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIR-VPSGNTFYVTNTDDDEKLYIVKFIKS  258 (540)
Q Consensus       180 rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~-iPaG~~h~~~N~g~~e~l~~v~i~~~  258 (540)
                      .++++++.||+...+|+|...+++||++|++.+.+    +..++.|++||.++ ||+|++|.+.|.+ +++++++.+...
T Consensus        35 ~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~----~~~~~~l~~Gd~i~~ip~~~~H~~~n~~-~~~~~~l~i~r~  109 (243)
T 3h7j_A           35 EVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV----GDVTRKMTALESAYIAPPHVPHGARNDT-DQEVIAIDIKRL  109 (243)
T ss_dssp             EEEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE----TTEEEEEETTTCEEEECTTCCEEEEECS-SSCEEEEEEEEC
T ss_pred             EEEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE----CCEEEEECCCCEEEEcCCCCcEeeEeCC-CCcEEEEEEecc
Confidence            35556899999989999999999999999999887    45689999999885 9999999999998 467887765422


Q ss_pred             CCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCCCC
Q 040805          259 INLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGES  338 (540)
Q Consensus       259 ~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~~  338 (540)
                      ...++     +    ..+.                               ++++..       |...  . . ..     
T Consensus       110 ~~~e~-----~----~~p~-------------------------------g~~~~~-------L~~~--~-~-~~-----  133 (243)
T 3h7j_A          110 KADET-----Y----TSPE-------------------------------DYFLDI-------FKTR--D-L-LP-----  133 (243)
T ss_dssp             CTTCC-----C----CCCT-------------------------------TSEECC-------EECS--C-S-BT-----
T ss_pred             Ccccc-----C----CCch-------------------------------hhhhhh-------ccCc--c-c-cc-----
Confidence            11110     0    0000                               111100       1000  0 0 00     


Q ss_pred             CceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcC-CCcccccccCCCcEEEEEEeceEEEEEEcCCCCC
Q 040805          339 RGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISK-GAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSR  417 (540)
Q Consensus       339 ~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~p-ggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~  417 (540)
                        .+      +        +..+        ....+.+..++|.| |+...+|||+. .+++||++|++.+.+=.     
T Consensus       134 --~~------~--------~~~~--------~~~~~~~~~~~~~p~g~~~~~H~H~~-~e~~~Vl~G~~~~~i~~-----  183 (243)
T 3h7j_A          134 --GM------E--------VTFF--------VEDWVEIMLAKIPGNGGEMPFHKHRN-EQIGICIGGGYDMTVEG-----  183 (243)
T ss_dssp             --TB------C--------EEEE--------EETTEEEEEEEECTTTEEEEEECCSS-EEEEEECSSCEEEEETT-----
T ss_pred             --Cc------c--------eeee--------ccceeEEEEEEECCCCCcCCCEeCCC-cEEEEEEECEEEEEECC-----
Confidence              00      0        0000        11135677889999 99999999975 69999999999987421     


Q ss_pred             CcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEec
Q 040805          418 SSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEIN  476 (540)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~  476 (540)
                                          +.  ..|++||+++||+|.+|.+.|.+++++.++.+.+.
T Consensus       184 --------------------~~--~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~p  220 (243)
T 3h7j_A          184 --------------------CT--VEMKFGTAYFCEPREDHGAINRSEKESKSINIFFP  220 (243)
T ss_dssp             --------------------EE--EEECTTCEEEECTTCCEEEEECSSSCEEEEEEEES
T ss_pred             --------------------EE--EEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcC
Confidence                                22  36999999999999999999998888888776443

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=99.58  E-value=1.8e-13  Score=138.35  Aligned_cols=198  Identities=17%  Similarity=0.213  Sum_probs=132.3

Q ss_pred             cceeeeeeeCCCccc-ccc-ccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805          178 KYRLGILIANPQTFV-TPT-HLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~-~Ph-~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i  255 (540)
                      .+.+.++++.||+.. .|+ +|..++++||++|++.+.+    +.+++.|++||.++||+|++|.+.|.+ +++++++.+
T Consensus        67 ~~~~~~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v----~g~~~~L~~GD~i~ip~~~~H~~~N~g-~~~~~~l~v  141 (278)
T 1sq4_A           67 TFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTL----QGQVHAMQPGGYAFIPPGADYKVRNTT-GQHTRFHWI  141 (278)
T ss_dssp             SCEEEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEE----SSCEEEECTTEEEEECTTCCEEEECCS-SSCEEEEEE
T ss_pred             cEEEEEEEECCCCccCCCCcCCCceEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCcEEEEECC-CCCEEEEEE
Confidence            344555699999876 454 4778999999999999988    456899999999999999999999997 568998877


Q ss_pred             eecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCC
Q 040805          256 IKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFA  335 (540)
Q Consensus       256 ~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~  335 (540)
                      ......        +.|          ++                     .. ..|+- +..+   +.+.          
T Consensus       142 ~~~y~~--------~~g----------~~---------------------~p-~~~vg-n~~d---i~~~----------  167 (278)
T 1sq4_A          142 RKHYQK--------VDG----------VP---------------------LP-EAFVT-NEQD---IQPL----------  167 (278)
T ss_dssp             EEECCC--------CTT----------CC---------------------CC-CCEEE-EGGG---SCCE----------
T ss_pred             Eecccc--------CCC----------Cc---------------------CC-ccccc-chhh---cCcc----------
Confidence            642221        111          00                     00 11221 0111   1110          


Q ss_pred             CCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCC
Q 040805          336 GESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHV  415 (540)
Q Consensus       336 ~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~  415 (540)
                           ++      |.........+.+.+.+    ...++.+..++|.||+-...|-|..-.+.+||++|++.+.+   ++
T Consensus       168 -----~~------~~~~~~~~~~r~l~p~~----~~~~~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~---~~  229 (278)
T 1sq4_A          168 -----VM------PDTEGRWSTTRFVDMSD----MRHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL---NQ  229 (278)
T ss_dssp             -----EC------SSGGGCEEEECSSCTTC----TTCSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE---TT
T ss_pred             -----cC------CCCCCceeEEEEecCCC----cCCCeEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE---CC
Confidence                 00      00000000111111111    13478899999999999886444445679999999999874   22


Q ss_pred             CCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE-Eec
Q 040805          416 SRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF-EIN  476 (540)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F-~~~  476 (540)
                                            +.  ..|++||++++++|.+|++.|.++++++++.+ |.|
T Consensus       230 ----------------------~~--~~v~~GD~~~~~~~~~h~~~n~g~~~~~yl~~~d~n  267 (278)
T 1sq4_A          230 ----------------------DW--VEVEAGDFMWLRAFCPQACYSGGPGRFRYLLYKDVN  267 (278)
T ss_dssp             ----------------------EE--EEEETTCEEEEEESCCEEEECCSSSCEEEEEEEECS
T ss_pred             ----------------------EE--EEeCCCCEEEECCCCCEEEEcCCCCCEEEEEEEEcC
Confidence                                  22  47999999999999999999999999998765 555

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=99.57  E-value=3.4e-13  Score=140.99  Aligned_cols=226  Identities=15%  Similarity=0.142  Sum_probs=140.5

Q ss_pred             ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      ..+.+++..|.||+...+|.|..++++||++|+|...+|   +...+.+++||+|++|+|..|.+.|+| ++++++++++
T Consensus       101 ~~L~a~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~v---dG~~~~~~~GD~v~iP~g~~H~~~N~g-de~l~~l~v~  176 (368)
T 3nw4_A          101 PTMWAAIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVV---NGDPVRMSRGDLLLTPGWCFHGHMNDT-DQPMAWIDGL  176 (368)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESSCEEEECSSCEEEEEEE---TTEEEEEETTCEEEECTTCCEEEEECS-SSCEEEEEEE
T ss_pred             CceEEEEEEECCCCccCceecccceEEEEEecceEEEEE---CCEEEEEeCCCEEEECCCCcEEeEeCC-CCCeEEEEec
Confidence            456688889999999999988889999999999953343   446899999999999999999999998 5799999888


Q ss_pred             ecCCCCCcccccccCCCCCcccccccCCH------------HHHHHhc-CC-CHHHHHHHhccCCCCcEEEccc----hh
Q 040805          257 KSINLPGQYEAFYGAGGENPESFLRAFSW------------EILESAF-KT-KRDSLERVLFQQDQGAMVKASK----QQ  318 (540)
Q Consensus       257 ~~~~~pg~~~~f~LaG~~~~~s~l~~f~~------------evLa~Af-~v-~~~~v~~l~~~q~~g~Iv~~~~----e~  318 (540)
                      |-.-     .. +|-.     +++-..+.            +--.+.| ++ +...   ... .....|++-+=    +.
T Consensus       177 D~Pl-----~~-~l~~-----~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~---~~~-~~~sP~~~ypw~~~~~a  241 (368)
T 3nw4_A          177 DIPF-----SQ-QMDV-----GFFEFGSDRVTDYATPNFSRGERLWCHPGLRPLSG---LQN-TVASPIGAYRWEFTDRA  241 (368)
T ss_dssp             CHHH-----HH-HHTC-----CCEEECCSSCSCCCCCSSCHHHHHHCSTTCCCGGG---CSC-CSSCSCCEECHHHHHHH
T ss_pred             chHH-----Hh-hcCc-----eeeecccccccccccccCCcccchhhccccccccc---cCC-CCCCCceecCHHHHHHH
Confidence            4211     11 1100     11111111            1000111 00 0000   000 00011111100    00


Q ss_pred             hhccCCCCCCCCcCCCCCCCCceeEcCC-CCCcccCCC-c-e-EEEecCCC-CCCCccccceEEEEEEcCCCcccccccC
Q 040805          319 IRALSRSQEGPSIWPFAGESRGTFNLFG-KRPSHSNNF-G-E-LFEADSND-FRPLEDLDITVSYANISKGAMAAPFYNS  393 (540)
Q Consensus       319 l~~l~~~~~~~s~~~~~~~~~~~fnL~~-~~P~~~n~~-G-~-~~~~~~~~-~p~L~~l~isv~~~~L~pggm~~PH~h~  393 (540)
                      |..                   ...|.. ..+  .... | . +..+|+.+ -+.+.  .|++....|.||.-..||=|+
T Consensus       242 L~~-------------------~~~l~~~~~~--~~~~~g~~~~~y~NP~tg~~~~p--ti~~~~~~L~pG~~t~~hRht  298 (368)
T 3nw4_A          242 LTE-------------------QLLLEDEGQP--ATVAPGHAAIRYVNPTTGGDVMP--TLRCEFHRLRAGTETATRNEV  298 (368)
T ss_dssp             HHH-------------------HHHHHHTTCS--CSSBTTEEEEECBCTTTSSBSSS--SCEEEEEEECTTCBCCCEEES
T ss_pred             HHh-------------------hhhhhhccCC--CcccCceEEEEEeCCCCCCCcch--hHHhheEEECCCCccCCeecc
Confidence            100                   000110 111  1111 3 3 45555432 23444  488889999999999999987


Q ss_pred             CCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805          394 RSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       394 ~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F  473 (540)
                      .+ .|.||++|+|.+.|   ++                      ++  .++++||+|+||.+.+|...|+  +++.+++|
T Consensus       299 ~s-~Vy~V~eG~G~~~I---~~----------------------~~--~~w~~gD~fvvP~w~~h~~~n~--~~a~Lf~~  348 (368)
T 3nw4_A          299 GS-TVFQVFEGAGAVVM---NG----------------------ET--TKLEKGDMFVVPSWVPWSLQAE--TQFDLFRF  348 (368)
T ss_dssp             SC-EEEEEEESCEEEEE---TT----------------------EE--EEECTTCEEEECTTCCEEEEES--SSEEEEEE
T ss_pred             cc-EEEEEEeCcEEEEE---CC----------------------EE--EEecCCCEEEECCCCcEEEEeC--CCEEEEEE
Confidence            54 89999999999987   22                      34  4799999999999999999987  46777777


Q ss_pred             E
Q 040805          474 E  474 (540)
Q Consensus       474 ~  474 (540)
                      .
T Consensus       349 ~  349 (368)
T 3nw4_A          349 S  349 (368)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=99.53  E-value=1.9e-12  Score=128.30  Aligned_cols=190  Identities=14%  Similarity=0.097  Sum_probs=130.3

Q ss_pred             ceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeec
Q 040805          179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKS  258 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~  258 (540)
                      +-+.++++.||+-..+|+  .++++||++|++.+.+    +..++.|++||.++||+|++|.+.|.   .+++++.+...
T Consensus        50 ~~~~~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~----~~~~~~l~~Gd~~~~p~~~~H~~~n~---~~~~~l~v~~~  120 (246)
T 1sfn_A           50 FVQFTAEMPAGAQATESV--YQRFAFVLSGEVDVAV----GGETRTLREYDYVYLPAGEKHMLTAK---TDARVSVFEKP  120 (246)
T ss_dssp             SEEEEEEECTTCEEECCS--SEEEEEEEEEEEEEEC----SSCEEEECTTEEEEECTTCCCEEEEE---EEEEEEEEEEC
T ss_pred             EEEEEEEECCCCcCCCCc--eeEEEEEEECEEEEEE----CCEEEEECCCCEEEECCCCCEEEEeC---CCEEEEEEEee
Confidence            334455999998776665  8899999999998887    45689999999999999999999997   36777766532


Q ss_pred             CCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCCCC
Q 040805          259 INLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGES  338 (540)
Q Consensus       259 ~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~~  338 (540)
                      .. |       +.|-.                               .. ..++. +..++.   +.       +     
T Consensus       121 y~-~-------~~g~~-------------------------------~p-~~~vg-~~~dv~---~~-------~-----  144 (246)
T 1sfn_A          121 YQ-T-------VEGVQ-------------------------------AP-GVYWG-NERENP---GY-------P-----  144 (246)
T ss_dssp             CC-C-------BTTBC-------------------------------CC-CCEEE-ETTTCC---CE-------E-----
T ss_pred             ec-c-------CCCCc-------------------------------CC-ceeec-cHhhCC---cc-------c-----
Confidence            21 1       11100                               00 12221 111111   00       0     


Q ss_pred             CceeEcCCCCCcccCCCc-eEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCC
Q 040805          339 RGTFNLFGKRPSHSNNFG-ELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSR  417 (540)
Q Consensus       339 ~~~fnL~~~~P~~~n~~G-~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~  417 (540)
                                  +....| .+..+.+.+.    ..++.+..++|.||+-...|.+....+.+||++|++.+.+   ++  
T Consensus       145 ------------~~~~~g~~~r~l~p~~~----~~~~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~---~~--  203 (246)
T 1sfn_A          145 ------------FEGDDHLIARKLLPDEP----AFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EE--  203 (246)
T ss_dssp             ------------TTSCTTEEEEECSCCCT----TCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TT--
T ss_pred             ------------cCCCCCeEEEEeCCCcc----CCCeEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE---CC--
Confidence                        111112 2222332221    3478899999999999887655567789999999999985   22  


Q ss_pred             CcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEec
Q 040805          418 SSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEIN  476 (540)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~  476 (540)
                                          +.  ..|++||.++++++.+|++.|.+++++.++.+..-
T Consensus       204 --------------------~~--~~l~~GD~~~~~~~~pH~~~n~g~~~~~yl~~kd~  240 (246)
T 1sfn_A          204 --------------------NY--YPVTAGDIIWMGAHCPQWYGALGRNWSKYLLYKDM  240 (246)
T ss_dssp             --------------------EE--EEEETTCEEEECTTCCEEEEEESSSCEEEEEEEEC
T ss_pred             --------------------EE--EEcCCCCEEEECCCCCEEEEcCCCCCEEEEEEEec
Confidence                                23  37999999999999999999999999999988543

>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y

Probab=99.38  E-value=2.4e-12  Score=109.20  Aligned_cols=86  Identities=21%  Similarity=0.297  Sum_probs=73.9

Q ss_pred             eEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHH
Q 040805          221 ESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLE  300 (540)
Q Consensus       221 ~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~  300 (540)
                      ....|++|||++||+|+++.+.+..   .|.||++-.+.++   ...+||||+.  .|+|+++|.++|+.||+++.++++
T Consensus         6 ~~~~l~~G~v~vVPq~~~v~~~A~~---~le~v~F~tna~~---~~~~~LAG~~--~Svl~~l~~evla~aF~~s~ee~~   77 (93)
T 1dgw_Y            6 YAATLSEGDIIVIPSSFPVALKAAS---DLNMVGIGVNAEN---NERNFLAGHK--ENVIRQIPRQVSDLTFPGSGEEVE   77 (93)
T ss_dssp             EEEEECTTCEEEECTTCCEEEEESS---SEEEEEEEESCTT---CCEEESSSST--TBSTTTSCHHHHHHHSSSCTHHHH
T ss_pred             hhceecCCcEEEECCCCceeEEecC---CeEEEEEEecCCC---CeeeeccCCc--ccHHHhCCHHHHHHHcCCCHHHHH
Confidence            3568999999999999999999974   3999988644433   4578999953  399999999999999999999999


Q ss_pred             HHhccCCCCcEEEc
Q 040805          301 RVLFQQDQGAMVKA  314 (540)
Q Consensus       301 ~l~~~q~~g~Iv~~  314 (540)
                      +|+..|.+++|+.+
T Consensus        78 ~l~~~q~e~~~~~~   91 (93)
T 1dgw_Y           78 ELLENQKESYFVDG   91 (93)
T ss_dssp             HHTTSCCCCSEECC
T ss_pred             HHHhcCCCceeccC
Confidence            99999998998864

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=99.19  E-value=1.7e-10  Score=106.62  Aligned_cols=85  Identities=18%  Similarity=0.273  Sum_probs=69.9

Q ss_pred             ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEec-----CCceEEeeCCCcEEEECCCCeEEEEeCCCCcc
Q 040805          175 GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRE-----NNRESYNVKRGDIIRVPSGNTFYVTNTDDDEK  249 (540)
Q Consensus       175 Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~-----~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~  249 (540)
                      |...+.+.++.+.||+...+|+|+..+++||++|++.+.+-..     +....+.|++||+++||+|++|++.|.+.+++
T Consensus        37 g~~~~~~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~  116 (163)
T 1lr5_A           37 GMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHED  116 (163)
T ss_dssp             CCSSEEEEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCCSSSC
T ss_pred             CCCcEEEEEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEEECCCCcEEeEeCCCCCC
Confidence            4455667777999999988999999999999999999887331     11278999999999999999999999872468


Q ss_pred             EEEEEEeecC
Q 040805          250 LYIVKFIKSI  259 (540)
Q Consensus       250 l~~v~i~~~~  259 (540)
                      +++++++.+.
T Consensus       117 ~~~l~i~~~~  126 (163)
T 1lr5_A          117 LQVLVIISRP  126 (163)
T ss_dssp             EEEEEEEESS
T ss_pred             EEEEEEECCC
Confidence            9999888554

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=99.12  E-value=3e-10  Score=104.67  Aligned_cols=80  Identities=19%  Similarity=0.360  Sum_probs=69.6

Q ss_pred             ccccceeeeeeeCCCc-ccccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCC-CeEEEEeCCCCccEE
Q 040805          175 GLEKYRLGILIANPQT-FVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSG-NTFYVTNTDDDEKLY  251 (540)
Q Consensus       175 Gi~~~rl~~~~l~Pgg-l~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG-~~h~~~N~g~~e~l~  251 (540)
                      |...+.+.++++.||+ ...+||| +..|++||++|++.+.+    +..++.|++||+++||+| ++|++.|.+ +++++
T Consensus        42 g~~~~~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~----~~~~~~l~~Gd~i~i~~~~~~H~~~n~~-~~~~~  116 (162)
T 3l2h_A           42 GLRHMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM----ENDQYPIAPGDFVGFPCHAAAHSISNDG-TETLV  116 (162)
T ss_dssp             TCCSEEEEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE----TTEEEEECTTCEEEECTTSCCEEEECCS-SSCEE
T ss_pred             CCCeEEEEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE----CCEEEEeCCCCEEEECCCCceEEeEeCC-CCCEE
Confidence            5666777778999999 5788988 79999999999999887    456899999999999998 999999997 57899


Q ss_pred             EEEEeecC
Q 040805          252 IVKFIKSI  259 (540)
Q Consensus       252 ~v~i~~~~  259 (540)
                      ++.+..+.
T Consensus       117 ~l~v~~p~  124 (162)
T 3l2h_A          117 CLVIGQRL  124 (162)
T ss_dssp             EEEEEECC
T ss_pred             EEEEECCC
Confidence            99888654

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=99.11  E-value=3e-10  Score=99.70  Aligned_cols=79  Identities=18%  Similarity=0.178  Sum_probs=65.5

Q ss_pred             cceeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          178 KYRLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      .+.+.++++.||+...+|||. ..+++||++|++.+.+   ++..++.|++||+++||+|++|++.|.+ ++++++++++
T Consensus        38 ~~~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~---~~~~~~~l~~Gd~~~i~~~~~H~~~n~~-~~~~~~l~v~  113 (125)
T 3h8u_A           38 DSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ---GNGIVTHLKAGDIAIAKPGQVHGAMNSG-PEPFIFVSVV  113 (125)
T ss_dssp             SCEEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC---STTCEEEEETTEEEEECTTCCCEEEECS-SSCEEEEEEE
T ss_pred             CEEEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE---CCCeEEEeCCCCEEEECCCCEEEeEeCC-CCCEEEEEEE
Confidence            345666799999999999987 5899999999998754   2346799999999999999999999987 5689999988


Q ss_pred             ecCC
Q 040805          257 KSIN  260 (540)
Q Consensus       257 ~~~~  260 (540)
                      .|..
T Consensus       114 ~p~~  117 (125)
T 3h8u_A          114 APGN  117 (125)
T ss_dssp             ESTT
T ss_pred             CCCc
Confidence            6543

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=99.09  E-value=6.7e-10  Score=103.81  Aligned_cols=79  Identities=13%  Similarity=0.172  Sum_probs=68.9

Q ss_pred             ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      ..+.+.++++.||+...+|||...+++||++|++.+.+    +..++.|++||+++||+|++|++.|.+.++++++++++
T Consensus        54 ~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i----~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~  129 (167)
T 3ibm_A           54 PAFETRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL----DDRVEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIV  129 (167)
T ss_dssp             SSEEEEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE----TTEEEEECTTCEEEECTTCCEEEEEESSSCCEEEEEEE
T ss_pred             CcEEEEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEE
Confidence            34556677999999999999999999999999999887    55689999999999999999999998734689999988


Q ss_pred             ecC
Q 040805          257 KSI  259 (540)
Q Consensus       257 ~~~  259 (540)
                      .+.
T Consensus       130 ~~~  132 (167)
T 3ibm_A          130 DSD  132 (167)
T ss_dssp             ESS
T ss_pred             eCC
Confidence            654

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=99.06  E-value=9.3e-10  Score=92.13  Aligned_cols=75  Identities=15%  Similarity=0.166  Sum_probs=63.9

Q ss_pred             ceeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          179 YRLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      +.+.++.+.||+...+|+|. ..+++||++|++.+.+    +...+.|++||+++||+|++|.+.|.+ ++++.++.++.
T Consensus        28 ~~~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~----~~~~~~l~~Gd~~~ip~~~~H~~~~~~-~~~~~~~~v~~  102 (105)
T 1v70_A           28 MLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV----GEEEALLAPGMAAFAPAGAPHGVRNES-ASPALLLVVTA  102 (105)
T ss_dssp             EEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE----TTEEEEECTTCEEEECTTSCEEEECCS-SSCEEEEEEEE
T ss_pred             eEEEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCcEEeEeCC-CCCEEEEEEeC
Confidence            45566699999988888886 5789999999999887    457899999999999999999999987 46898888775


Q ss_pred             c
Q 040805          258 S  258 (540)
Q Consensus       258 ~  258 (540)
                      |
T Consensus       103 p  103 (105)
T 1v70_A          103 P  103 (105)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=99.06  E-value=1.2e-09  Score=94.87  Aligned_cols=94  Identities=15%  Similarity=0.163  Sum_probs=73.4

Q ss_pred             cccceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEE-eeC
Q 040805          148 EESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESY-NVK  226 (540)
Q Consensus       148 ~f~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~-~l~  226 (540)
                      .|.-.-.++.|.++.+-  .        -..+.+..+.+.||+...+|||+..+++||++|++.+.+    +...+ .|+
T Consensus         6 ~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i----~~~~~~~l~   71 (117)
T 2b8m_A            6 VYEFKRDAKTKVVEKLV--N--------TEHVQINHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL----EDQEPHNYK   71 (117)
T ss_dssp             CCCCCSSCCSCEEEEEE--E--------CSSCEEEEEEEETTCBCCCEECSSCEEEEEEESEEEEEE----TTSCCEEEE
T ss_pred             eeeeecCCCcceeeeec--C--------CCceEEEEEEECCCCcCCCEeCCCcEEEEEEeCEEEEEE----CCEEEEEeC
Confidence            35445556677777652  1        123345556889999988999999999999999999887    34467 999


Q ss_pred             CCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          227 RGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       227 ~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      +||+++||+|++|++.|.+ ++++.++.+.
T Consensus        72 ~Gd~i~ip~~~~H~~~~~~-~~~~~~l~i~  100 (117)
T 2b8m_A           72 EGNIVYVPFNVKMLIQNIN-SDILEFFVVK  100 (117)
T ss_dssp             TTCEEEECTTCEEEEECCS-SSEEEEEEEE
T ss_pred             CCCEEEECCCCcEEeEcCC-CCCEEEEEEE
Confidence            9999999999999999987 4578888775

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=99.05  E-value=1.3e-09  Score=93.02  Aligned_cols=78  Identities=22%  Similarity=0.317  Sum_probs=66.0

Q ss_pred             cceeeeeeeCCCcccccc--ccC-CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEE
Q 040805          178 KYRLGILIANPQTFVTPT--HLD-ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK  254 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph--~~~-A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~  254 (540)
                      .+.+..+++.||+...+|  +|. ..+++||++|++.+.+    +..++.|++||+++||+|++|++.|.+ +++++++.
T Consensus        20 ~~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~----~~~~~~l~~Gd~~~i~~~~~H~~~~~~-~~~~~~~~   94 (113)
T 2gu9_A           20 QVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV----DGHTQALQAGSLIAIERGQAHEIRNTG-DTPLKTVN   94 (113)
T ss_dssp             TEEEEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE----TTEEEEECTTEEEEECTTCCEEEECCS-SSCEEEEE
T ss_pred             cEEEEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCcEEeEcCC-CCCEEEEE
Confidence            345566699999988777  776 8999999999999887    456899999999999999999999987 46898888


Q ss_pred             EeecCC
Q 040805          255 FIKSIN  260 (540)
Q Consensus       255 i~~~~~  260 (540)
                      ++.+..
T Consensus        95 v~~~~~  100 (113)
T 2gu9_A           95 FYHPPA  100 (113)
T ss_dssp             EEESCC
T ss_pred             EECCCC
Confidence            876544

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=99.03  E-value=7.6e-10  Score=99.10  Aligned_cols=80  Identities=13%  Similarity=0.185  Sum_probs=67.0

Q ss_pred             ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      ..+.+..+++.||+...+|||...+++||++|++.+.+..  +..++.|++||+++||+|++|.+.|.+ +++++++.++
T Consensus        37 ~~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~--~~~~~~l~~Gd~~~ip~~~~H~~~~~~-~~~~~~l~i~  113 (145)
T 3ht1_A           37 DRFVLTEFEVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPD--QGRTEEVGPGEAIFIPRGEPHGFVTGP-GQTCRFLVVA  113 (145)
T ss_dssp             CSEEEEEEEEEEEEECCCEECSSCEEEEEEEECEEEEEGG--GTEEEEECTTCEEEECTTCCBEEECCT-TCCEEEEEEE
T ss_pred             CcEEEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEEeE--CCEEEEECCCCEEEECCCCeEEeEcCC-CCCEEEEEEE
Confidence            4566777799999999999999999999999999887211  447899999999999999999999987 5679888887


Q ss_pred             ecC
Q 040805          257 KSI  259 (540)
Q Consensus       257 ~~~  259 (540)
                      .+.
T Consensus       114 ~~~  116 (145)
T 3ht1_A          114 PCE  116 (145)
T ss_dssp             ESC
T ss_pred             CCC
Confidence            443

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=98.99  E-value=1.8e-09  Score=99.99  Aligned_cols=77  Identities=12%  Similarity=0.164  Sum_probs=67.4

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      .+.+.++++.||+...+|+|...+++||++|++.+.+    +..++.|++||+++||+|++|.+.|.+ ++++.+++++.
T Consensus        43 ~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v----~g~~~~l~~Gd~i~ip~~~~H~~~n~g-~~~~~~l~i~~  117 (156)
T 3kgz_A           43 ACEWRYFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV----GETISDVAQGDLVFIPPMTWHQFRANR-GDCLGFLCVVN  117 (156)
T ss_dssp             SEEEEEEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE----TTEEEEEETTCEEEECTTCCEEEECCS-SSCEEEEEEEE
T ss_pred             cEEEEEEEECCCCccCceeCCCcEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCcEEeEeCC-CCCEEEEEEEe
Confidence            4455666899999999999999999999999999887    557899999999999999999999998 56899999885


Q ss_pred             cC
Q 040805          258 SI  259 (540)
Q Consensus       258 ~~  259 (540)
                      +.
T Consensus       118 ~~  119 (156)
T 3kgz_A          118 AA  119 (156)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=98.98  E-value=2.7e-09  Score=97.13  Aligned_cols=81  Identities=15%  Similarity=0.138  Sum_probs=64.5

Q ss_pred             ceeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEecCC--ceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805          179 YRLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIRENN--RESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~--~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i  255 (540)
                      +.+.++.+.||+...+|||. .++++||++|++.+.+-....  ..++.|++||+++||+|++|++.|.+ +++++++++
T Consensus        43 ~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~-~~~~~~l~i  121 (148)
T 2oa2_A           43 LQVTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAILIPAGTWHNVRNTG-NRPLKLYSI  121 (148)
T ss_dssp             CEEEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEEECTTCEEEEEECS-SSCEEEEEE
T ss_pred             eEEEEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEEECCCCcEEEEECC-CCCEEEEEE
Confidence            44555699999988899886 679999999999988722110  12389999999999999999999987 568988888


Q ss_pred             eecCC
Q 040805          256 IKSIN  260 (540)
Q Consensus       256 ~~~~~  260 (540)
                      +.+..
T Consensus       122 ~~~~~  126 (148)
T 2oa2_A          122 YAPPQ  126 (148)
T ss_dssp             EESCC
T ss_pred             ECCCC
Confidence            76544

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=98.98  E-value=1.6e-09  Score=91.56  Aligned_cols=75  Identities=16%  Similarity=0.129  Sum_probs=61.5

Q ss_pred             cceeeeeeeCCCccccccccCCC-eEEEEEeeEEEEEEEecCCc-eEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805          178 KYRLGILIANPQTFVTPTHLDAD-AVFFVSWGQGTITVIRENNR-ESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~-ei~yV~~G~g~ig~V~~~~~-~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i  255 (540)
                      .+.+..+++.||+...+|+|..+ +++||++|++++.+   ++. ..+.|++||++++|+|++|++.|.+ +++++++.+
T Consensus        17 ~~~~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~---~~g~~~~~l~~Gd~~~~p~~~~H~~~N~g-~~~~~~l~v   92 (97)
T 2fqp_A           17 RVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET---PEGSVTSQLTRGVSYTRPEGVEHNVINPS-DTEFVFVEI   92 (97)
T ss_dssp             SEEEEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEE---TTEEEEEEECTTCCEEECTTCEEEEECCS-SSCEEEEEE
T ss_pred             eEEEEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEe---CCCCEEEEEcCCCEEEeCCCCcccCEeCC-CCcEEEEEE
Confidence            34555669999998777877765 69999999998876   222 6899999999999999999999998 467888765


Q ss_pred             e
Q 040805          256 I  256 (540)
Q Consensus       256 ~  256 (540)
                      -
T Consensus        93 ~   93 (97)
T 2fqp_A           93 E   93 (97)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=98.98  E-value=2e-09  Score=100.76  Aligned_cols=78  Identities=17%  Similarity=0.150  Sum_probs=67.8

Q ss_pred             ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      ..+.+.++++.||+...+|||...+++||++|++.+.+    +..++.|++||+++||+|++|.+.|++ ++++.+++++
T Consensus        51 ~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v----~g~~~~l~~GD~i~ip~g~~H~~~n~~-~~~~~~l~i~  125 (166)
T 3jzv_A           51 LTGELRYFEVGPGGHSTLERHQHAHGVMILKGRGHAMV----GRAVSAVAPYDLVTIPGWSWHQFRAPA-DEALGFLCMV  125 (166)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCSSCEEEEEEEECEEEEE----TTEEEEECTTCEEEECTTCCEEEECCT-TSCEEEEEEE
T ss_pred             CeEEEEEEEECCCCccCceeCCCcEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCcEEeEeCC-CCCEEEEEEE
Confidence            34556667999999999999999999999999999877    456899999999999999999999987 5789999888


Q ss_pred             ecC
Q 040805          257 KSI  259 (540)
Q Consensus       257 ~~~  259 (540)
                      .+.
T Consensus       126 ~~~  128 (166)
T 3jzv_A          126 NAE  128 (166)
T ss_dssp             ESS
T ss_pred             ccC
Confidence            543

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=98.98  E-value=2.6e-09  Score=93.69  Aligned_cols=75  Identities=13%  Similarity=0.187  Sum_probs=64.7

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      .+.+.++.+.||+...+|+|...+++||++|++.+.+    +...+.|++||+++||+|++|.+.|.+ + ++.++.++.
T Consensus        40 ~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~----~~~~~~l~~Gd~~~ip~~~~H~~~~~~-~-~~~~l~v~~  113 (126)
T 4e2g_A           40 NLMLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI----GEETRVLRPGMAYTIPGGVRHRARTFE-D-GCLVLDIFS  113 (126)
T ss_dssp             SCEEEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE----TTEEEEECTTEEEEECTTCCEEEECCT-T-CEEEEEEEE
T ss_pred             CeEEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE----CCEEEEeCCCCEEEECCCCcEEeEECC-C-CEEEEEEEC
Confidence            3456666999999989999988999999999999887    456799999999999999999999987 3 678887775


Q ss_pred             c
Q 040805          258 S  258 (540)
Q Consensus       258 ~  258 (540)
                      |
T Consensus       114 p  114 (126)
T 4e2g_A          114 P  114 (126)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=98.98  E-value=4e-09  Score=92.02  Aligned_cols=74  Identities=12%  Similarity=0.194  Sum_probs=61.9

Q ss_pred             ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805          177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i  255 (540)
                      ..+.+..+.+.||+...+|+|..++++||++|++.+.+    +..++.|++||+++||+|++|.+.|.+ +..+.++.+
T Consensus        34 ~~~~v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i----~~~~~~l~~Gd~i~ip~~~~H~~~~~~-~~~~~~~~v  107 (114)
T 3fjs_A           34 HRLEVMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV----DGAQRRLHQGDLLYLGAGAAHDVNAIT-NTSLLVTVV  107 (114)
T ss_dssp             TTEEEEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE----TTEEEEECTTEEEEECTTCCEEEEESS-SEEEEEEEE
T ss_pred             CCEEEEEEEECCCCccCceeCCCcEEEEEEECEEEEEE----CCEEEEECCCCEEEECCCCcEEEEeCC-CcEEEEEEE
Confidence            34566677999999999999999999999999999887    456899999999999999999999986 334544433

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=98.97  E-value=2.6e-09  Score=99.26  Aligned_cols=101  Identities=16%  Similarity=0.209  Sum_probs=77.2

Q ss_pred             ccceee-cCCceEEEeccCccccccccccccceeeeeeeCCCccc-cccccCC-CeEEEEEeeEEEEEEEecCCceEEee
Q 040805          149 ESSRVT-SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFV-TPTHLDA-DAVFFVSWGQGTITVIRENNRESYNV  225 (540)
Q Consensus       149 f~~~~~-~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~-~Ph~~~A-~ei~yV~~G~g~ig~V~~~~~~~~~l  225 (540)
                      +...+. ...|.++.+  ..   +. .|...+.+.++++.||+.. .+|||.. +|++||++|++.+.+    +..++.|
T Consensus        18 ~p~p~~~~~~G~~~~~--l~---~~-~~~~~~~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~----~~~~~~l   87 (163)
T 3i7d_A           18 YPGRLNAAMDGRSSLR--LG---DA-GGLSQFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD----DQGEHPM   87 (163)
T ss_dssp             CCGGGGGGGTTEEEEE--HH---HH-TTCCSEEEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE----TTEEEEE
T ss_pred             CCCCccccCCCeEEEE--cc---cC-CCCCeEEEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE----CCEEEEe
Confidence            334443 446666654  11   11 2455677778899999965 6788865 799999999999887    4568999


Q ss_pred             CCCcEEEECCC--CeEEEEeCCCCccEEEEEEeecCC
Q 040805          226 KRGDIIRVPSG--NTFYVTNTDDDEKLYIVKFIKSIN  260 (540)
Q Consensus       226 ~~GDv~~iPaG--~~h~~~N~g~~e~l~~v~i~~~~~  260 (540)
                      ++||+++||+|  ++|++.|.+ +++++++.+..+..
T Consensus        88 ~~GD~i~ip~~~~~~H~~~n~~-~~~~~~l~v~~p~~  123 (163)
T 3i7d_A           88 VPGDCAAFPAGDPNGHQFVNRT-DAPATFLVVGTRTP  123 (163)
T ss_dssp             CTTCEEEECTTCCCCBEEECCS-SSCEEEEEEEECCS
T ss_pred             CCCCEEEECCCCCcceEEEECC-CCCEEEEEEECCCC
Confidence            99999999999  999999997 56899998886554

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=98.96  E-value=4.3e-09  Score=100.34  Aligned_cols=81  Identities=12%  Similarity=0.199  Sum_probs=66.9

Q ss_pred             cceeeeeeeCCCcc------ccccccC---CCeEEEEEeeEEEEEEEec-CCceEEeeCCCcEEEECCCCeEEEEeCCCC
Q 040805          178 KYRLGILIANPQTF------VTPTHLD---ADAVFFVSWGQGTITVIRE-NNRESYNVKRGDIIRVPSGNTFYVTNTDDD  247 (540)
Q Consensus       178 ~~rl~~~~l~Pggl------~~Ph~~~---A~ei~yV~~G~g~ig~V~~-~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~  247 (540)
                      .+.+.++++.||+.      ..+|||.   .+|++||++|++.+.+-.. +....+.|++||+++||+|++|++.|++ +
T Consensus        66 ~l~~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ip~g~~H~~~N~g-~  144 (190)
T 1x82_A           66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIG-D  144 (190)
T ss_dssp             CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECS-S
T ss_pred             CeEEEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEEECCCCeEEEEECC-c
Confidence            45677779999998      7788874   4799999999999988543 2334689999999999999999999998 5


Q ss_pred             ccEEEEEEeecC
Q 040805          248 EKLYIVKFIKSI  259 (540)
Q Consensus       248 e~l~~v~i~~~~  259 (540)
                      +++++++++.+.
T Consensus       145 ~~~~~l~v~~~~  156 (190)
T 1x82_A          145 EPFIFLAIYPAD  156 (190)
T ss_dssp             SCEEEEEEEETT
T ss_pred             ccEEEEEEECCC
Confidence            689999888543

>2l37_A Ribosome-inactivating protein luffin P1; hydrolase; NMR {Luffa aegyptiaca}

Probab=98.95  E-value=5.3e-10  Score=80.90  Aligned_cols=39  Identities=26%  Similarity=0.757  Sum_probs=34.4

Q ss_pred             CCc--hhHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHh
Q 040805           26 KDP--ELKQCKHQCRARQQYDEKQKEQCARTCEEYYKEKEQR   65 (540)
Q Consensus        26 ~dp--~~~~c~~~c~~~~~~~~~~~~~c~~~c~~~~~~~~~~   65 (540)
                      .||  +|++|+++|+++.+ +.+++++|+++|++||++++++
T Consensus         1 ~dP~~el~~C~~~C~~q~q-~~eq~q~C~qrCee~y~e~~~~   41 (43)
T 2l37_A            1 GSPRTEYEACRVRCQVAEH-GVERQRRCQQVCEKRLREREGR   41 (43)
T ss_dssp             CCCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHHCS
T ss_pred             CCHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhhcc
Confidence            489  79999999999999 6677789999999999998643

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=98.94  E-value=6.9e-09  Score=94.63  Aligned_cols=96  Identities=16%  Similarity=0.252  Sum_probs=74.7

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceE-EeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRES-YNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~-~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      .+.+..+.+.||+...+|+|+..+++||++|++.+.+    +... +.|++||+++||+|++|++.|.+ ++++.++++.
T Consensus        47 ~~~~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~----~~~~~~~l~~Gd~i~ip~~~~H~~~n~~-~~~~~~l~v~  121 (147)
T 2f4p_A           47 NTQVYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQE----RGKPARILKKGDVVEIPPNVVHWHGAAP-DEELVHIGIS  121 (147)
T ss_dssp             SCEEEEEEECTTCEECSEECTTCEEEEEEEEEEEEEE----TTSCCEEEETTCEEEECTTCCEEEEEBT-TBCEEEEEEE
T ss_pred             cEEEEEEEECCCCccCceECCCceEEEEEeCEEEEEE----CCEEEEEECCCCEEEECCCCcEEeEeCC-CCCEEEEEEE
Confidence            3455566999999888999988999999999999887    3344 89999999999999999999987 5689888877


Q ss_pred             ecCCCCCcccccccCCCCCcccccccCCHHHHHHh
Q 040805          257 KSINLPGQYEAFYGAGGENPESFLRAFSWEILESA  291 (540)
Q Consensus       257 ~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~A  291 (540)
                      .+..  +.           ...|+..++.+.+.++
T Consensus       122 ~~~~--~~-----------~~~wl~~v~~e~~~~~  143 (147)
T 2f4p_A          122 TQVH--LG-----------PAEWLGSVTEEEYRKA  143 (147)
T ss_dssp             CCGG--GC-----------CCEECCCCCHHHHHHH
T ss_pred             ccCC--CC-----------CceecccCCHHHhhhc
Confidence            4321  10           1267777777666544

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=98.94  E-value=5e-09  Score=92.09  Aligned_cols=73  Identities=23%  Similarity=0.365  Sum_probs=63.5

Q ss_pred             ceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      +.+..+++.||....+|||+..+++||++|++.+.+    +..++.|++||+++||+|.+|.+.|.+ ++++.++++.
T Consensus        34 ~~~~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i----~~~~~~l~~Gd~~~i~~~~~H~~~~~~-~~~~~~~~i~  106 (128)
T 4i4a_A           34 FGGAWCIVRPETKSFRHSHNEYELFIVIQGNAIIRI----NDEDFPVTKGDLIIIPLDSEHHVINNN-QEDFHFYTIW  106 (128)
T ss_dssp             SEEEEEEECTTEECCCBCCSSEEEEEEEESEEEEEE----TTEEEEEETTCEEEECTTCCEEEEECS-SSCEEEEEEE
T ss_pred             cEEEEEEECCCCccCCEecCCeEEEEEEeCEEEEEE----CCEEEEECCCcEEEECCCCcEEeEeCC-CCCEEEEEEE
Confidence            444555899999989999999999999999999888    557899999999999999999999987 4578877665

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=98.92  E-value=9.9e-10  Score=90.56  Aligned_cols=65  Identities=12%  Similarity=0.203  Sum_probs=54.7

Q ss_pred             cceeecCCceEEEeccCcccccccc--ccccceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCC
Q 040805          150 SSRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENN  219 (540)
Q Consensus       150 ~~~~~~e~G~i~~l~~f~~~~~~L~--Gi~~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~  219 (540)
                      ...+.+.+|++..++.  .+.|.|+  ||+..|+   .+.|||+++|||| +|++|+||++|++++++|++.+
T Consensus        10 ~p~~~n~~G~~~~~~~--~~~P~Ln~lgls~~r~---~l~~gg~~~PH~hprA~ei~~V~~G~~~v~~V~~~g   77 (79)
T 1dgw_X           10 DPIYSNNYGKLYEITP--EKNSQLRDLDILLNCL---QMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQ   77 (79)
T ss_dssp             CCSEECSSEEEEEECT--TTCHHHHTTTEEEEEE---EECTTCEEEEEEESSCEEEEEEEESCEEEEEEEEC-
T ss_pred             CCCccCCCCcEEEECh--hhCcccCcCCcceEEE---EEcCCcCcCCccCCCCcEEEEEEeceEEEEEecCCC
Confidence            3567899999988843  3458888  6677777   9999999999996 8999999999999999999875

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=98.91  E-value=1.3e-08  Score=87.70  Aligned_cols=74  Identities=11%  Similarity=-0.028  Sum_probs=62.6

Q ss_pred             ceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeec
Q 040805          179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKS  258 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~  258 (540)
                      +.+..+.+.||+...+|+|+..+++||++|++.+.+    +...+.|++||+++||+|++|.+.|.+   ++.++.++.|
T Consensus        34 ~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~----~~~~~~l~~Gd~~~ip~~~~H~~~~~~---~~~~l~v~~p  106 (116)
T 2pfw_A           34 LMAVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV----DGVIKVLTAGDSFFVPPHVDHGAVCPT---GGILIDTFSP  106 (116)
T ss_dssp             EEEEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE----TTEEEEECTTCEEEECTTCCEEEEESS---CEEEEEEEES
T ss_pred             eEEEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE----CCEEEEeCCCCEEEECcCCceeeEeCC---CcEEEEEECC
Confidence            455666999999888898999999999999998887    456899999999999999999999986   4667777744


Q ss_pred             C
Q 040805          259 I  259 (540)
Q Consensus       259 ~  259 (540)
                      .
T Consensus       107 ~  107 (116)
T 2pfw_A          107 A  107 (116)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=98.90  E-value=1.9e-07  Score=92.08  Aligned_cols=183  Identities=10%  Similarity=0.119  Sum_probs=113.3

Q ss_pred             ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      ..+.++++.+ .|......| ..+|++||++|+.+|+.    +.....+++||+++||+|+.+-+...+ .-.+ +++.+
T Consensus        45 ~~~~~G~~~~-~g~~~v~~~-p~dE~~~VleG~~~lt~----~g~~~~~~~Gd~~~ip~G~~~~w~~~~-~~~~-~y~~~  116 (238)
T 3myx_A           45 QGIAAGIVEF-GTALSVEAY-PYTEMLVMHRGSVTLTS----GTDSVTLSTGESAVIGRGTQVRIDAQP-ESLW-AFCAS  116 (238)
T ss_dssp             TSEEEEEEEE-CSEEEESSC-SSEEEEEEEESEEEEEE----TTEEEEEETTCEEEECTTCCEEEEECT-TEEE-EEEEE
T ss_pred             CCeEEEEEEe-ccccccccC-CCcEEEEEEEeEEEEEC----CCeEEEEcCCCEEEECCCCEEEEEecC-CeEE-EEEec
Confidence            4567777888 776655333 34899999999999886    357889999999999999999998875 2222 22233


Q ss_pred             ec-CCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCC
Q 040805          257 KS-INLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFA  335 (540)
Q Consensus       257 ~~-~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~  335 (540)
                       + ...|.                                           ..| |+.+..+.  .|.|.  +   .   
T Consensus       117 -~~~~~p~-------------------------------------------~~~-~~~i~~~~--~l~P~--~---~---  141 (238)
T 3myx_A          117 -TQASGPD-------------------------------------------KSG-ITALDRLA--LLTPS--S---P---  141 (238)
T ss_dssp             -CSCCSCC-------------------------------------------CCS-EEEECTTC--CCEEE--C---C---
T ss_pred             -cCCCCCC-------------------------------------------CCc-cEEecCCC--CCCCC--C---C---
Confidence             2 11121                                           112 44442211  12221  0   0   


Q ss_pred             CCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCC
Q 040805          336 GESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHV  415 (540)
Q Consensus       336 ~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~  415 (540)
                         ..+=.|.+.+|....   +  .+...  +   +-.+++..-..+||..+.  |+-..+|+.||++|+..++.  .++
T Consensus       142 ---p~p~~~l~G~P~~~~---~--~~~~~--~---~g~~~~GiW~~tpG~~~~--~~~~~~E~~~ILeG~v~lt~--~~G  204 (238)
T 3myx_A          142 ---PDPSIMISPLPQCRS---N--NLFED--T---ASTLRIGVWDSTPYERIS--RPHKIHELMNLIEGRVVLSL--ENG  204 (238)
T ss_dssp             ---CCGGGBSSCCCCEEE---E--EEEEC--S---SSSCEEEEEEECCEEBCC--EECSSCEEEEEEECCEEEEE--TTS
T ss_pred             ---CChhheecCCchhee---e--EEEEC--C---CCCEEEeEEEeCCCEEEC--CcCCCCEEEEEEEeEEEEEe--CCC
Confidence               011233445554321   1  11111  1   124778888889988443  22368899999999998873  233


Q ss_pred             CCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEec
Q 040805          416 SRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS  463 (540)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~  463 (540)
                                            +.  ..+++||+++||+|+...+.-.
T Consensus       205 ----------------------~~--~~~~aGD~~~~P~G~~~tWev~  228 (238)
T 3myx_A          205 ----------------------SS--LTVNTGDTVFVAQGAPCKWTST  228 (238)
T ss_dssp             ----------------------CE--EEECTTCEEEECTTCEEEEEES
T ss_pred             ----------------------CE--EEECCCCEEEECCCCEEEEEEC
Confidence                                  22  3699999999999999876554

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=98.89  E-value=8.5e-09  Score=90.38  Aligned_cols=78  Identities=13%  Similarity=0.104  Sum_probs=65.5

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      ++.+.++.|.||+...+|||+...++.||++|++.+.+-  ++                      +.  ..|++||+++|
T Consensus        38 ~~~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~--~~----------------------~~--~~l~~Gd~~~i   91 (125)
T 3h8u_A           38 DSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG--NG----------------------IV--THLKAGDIAIA   91 (125)
T ss_dssp             SCEEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECS--TT----------------------CE--EEEETTEEEEE
T ss_pred             CEEEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC--CC----------------------eE--EEeCCCCEEEE
Confidence            578899999999999999999889999999999988641  12                      12  36999999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEEEec
Q 040805          453 PAGHPVVTVASQNNNLEVVCFEIN  476 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F~~~  476 (540)
                      |+|.+|++.|.+++++.++++.+.
T Consensus        92 ~~~~~H~~~n~~~~~~~~l~v~~p  115 (125)
T 3h8u_A           92 KPGQVHGAMNSGPEPFIFVSVVAP  115 (125)
T ss_dssp             CTTCCCEEEECSSSCEEEEEEEES
T ss_pred             CCCCEEEeEeCCCCCEEEEEEECC
Confidence            999999999988899998877544

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=98.89  E-value=1.1e-08  Score=89.90  Aligned_cols=79  Identities=14%  Similarity=0.171  Sum_probs=64.2

Q ss_pred             ccceeeeeeeCCCcccc-ccccCCCeE-EEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEE
Q 040805          177 EKYRLGILIANPQTFVT-PTHLDADAV-FFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK  254 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~-Ph~~~A~ei-~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~  254 (540)
                      ..+.+.++.+.||+... ||+|+..++ +||++|++.+.+    +...+.|++||+++||+|.+|.+.|.+ ++++.+++
T Consensus        24 ~~~~~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i----~~~~~~l~~Gd~i~i~~~~~H~~~~~~-~~~~~~~~   98 (125)
T 3cew_A           24 TGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI----DGEKIELQAGDWLRIAPDGKRQISAAS-DSPIGFLC   98 (125)
T ss_dssp             SSCEEEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE----TTEEEEEETTEEEEECTTCCEEEEEBT-TBCEEEEE
T ss_pred             CCcEEEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCcEEEEcCC-CCCEEEEE
Confidence            44556667999999877 798887655 559999999887    457899999999999999999999987 46788887


Q ss_pred             EeecCC
Q 040805          255 FIKSIN  260 (540)
Q Consensus       255 i~~~~~  260 (540)
                      +..+..
T Consensus        99 i~~~~~  104 (125)
T 3cew_A           99 IQVKAG  104 (125)
T ss_dssp             EEEETT
T ss_pred             EEcCCc
Confidence            775543

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=98.88  E-value=1.6e-08  Score=91.97  Aligned_cols=83  Identities=16%  Similarity=0.186  Sum_probs=68.4

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      ++.+..+.+.||+...+|||+...+++||++|++.+.+-.....                     ..+...|.+||+++|
T Consensus        42 ~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~---------------------~~~~~~l~~Gd~i~i  100 (148)
T 2oa2_A           42 HLQVTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDN---------------------LHFQEEVFDDYAILI  100 (148)
T ss_dssp             SCEEEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTB---------------------CCEEEEEETTCEEEE
T ss_pred             ceEEEEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCcccc---------------------ceeeEEECCCCEEEE
Confidence            57788999999999999999988899999999999987543210                     113357999999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEEEec
Q 040805          453 PAGHPVVTVASQNNNLEVVCFEIN  476 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F~~~  476 (540)
                      |+|.+|.+.|.+++++.++++...
T Consensus       101 p~g~~H~~~n~~~~~~~~l~i~~~  124 (148)
T 2oa2_A          101 PAGTWHNVRNTGNRPLKLYSIYAP  124 (148)
T ss_dssp             CTTCEEEEEECSSSCEEEEEEEES
T ss_pred             CCCCcEEEEECCCCCEEEEEEECC
Confidence            999999999988888888776444

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=98.88  E-value=4.6e-09  Score=92.91  Aligned_cols=75  Identities=16%  Similarity=0.208  Sum_probs=64.0

Q ss_pred             ceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeec
Q 040805          179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKS  258 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~  258 (540)
                      +.+..+.+.||+...+|+|+..+++||++|++++.+    +..++.|++||+++||+|.+|.+.|.+ ++++.+++++.+
T Consensus        48 ~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i----~~~~~~l~~Gd~i~ip~g~~H~~~~~~-~~~~~~l~v~~~  122 (126)
T 1vj2_A           48 FVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK----EQGEETVEEGFYIFVEPNEIHGFRNDT-DSEVEFLCLIPK  122 (126)
T ss_dssp             EEEEEEEEEEEEEEEEECCSSCEEEEEEESEEEEEC----SSCEEEEETTEEEEECTTCCEEEECCS-SSCEEEEEEEEG
T ss_pred             EEEEEEEECCCCcCCceeCCCcEEEEEEEeEEEEEE----CCEEEEECCCCEEEECCCCcEEeEeCC-CCCEEEEEEEcc
Confidence            345555999999888999999999999999998876    456799999999999999999999987 467888877743

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=98.87  E-value=1.8e-08  Score=96.07  Aligned_cols=82  Identities=13%  Similarity=0.181  Sum_probs=69.5

Q ss_pred             cceEEEEEEcCCCc------ccccccC--CCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeee
Q 040805          373 DITVSYANISKGAM------AAPFYNS--RSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRI  444 (540)
Q Consensus       373 ~isv~~~~L~pggm------~~PH~h~--~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  444 (540)
                      ++.+..+.|.||+.      ..+|||+  +..++.||++|++.+.+-...+                      +.+...|
T Consensus        66 ~l~~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g----------------------~~~~~~l  123 (190)
T 1x82_A           66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEG----------------------DAKWISM  123 (190)
T ss_dssp             CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTC----------------------CEEEEEE
T ss_pred             CeEEEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCC----------------------cEEEEEE
Confidence            57788889999998      7799998  5689999999999999876533                      3445689


Q ss_pred             CCCcEEEECCCCeEEEEecCCCCEEEEEEEec
Q 040805          445 RTDSAYIVPAGHPVVTVASQNNNLEVVCFEIN  476 (540)
Q Consensus       445 ~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~  476 (540)
                      ++||+++||+|.+|++.|.+++++.++++...
T Consensus       124 ~~GD~v~ip~g~~H~~~N~g~~~~~~l~v~~~  155 (190)
T 1x82_A          124 EPGTVVYVPPYWAHRTVNIGDEPFIFLAIYPA  155 (190)
T ss_dssp             CTTCEEEECTTCEEEEEECSSSCEEEEEEEET
T ss_pred             CCCcEEEECCCCeEEEEECCcccEEEEEEECC
Confidence            99999999999999999988899998876433

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=98.87  E-value=1.3e-08  Score=87.52  Aligned_cols=71  Identities=17%  Similarity=0.310  Sum_probs=60.0

Q ss_pred             ceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      +.+..+.+.||....+|+|+..+++||++|++.+.+    +...+.|++||+++||+|.+|++.|.+   ++.+++++
T Consensus        40 ~~~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~----~~~~~~l~~Gd~~~ip~~~~H~~~~~~---~~~~~~v~  110 (115)
T 1yhf_A           40 LGITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI----DQETYRVAEGQTIVMPAGIPHALYAVE---AFQMLLVV  110 (115)
T ss_dssp             EEEEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE----TTEEEEEETTCEEEECTTSCEEEEESS---CEEEEEEE
T ss_pred             eEEEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCCEEEEECC---CceEEEEE
Confidence            345566899999888999999999999999998887    456799999999999999999999986   35555555

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=98.87  E-value=1.9e-08  Score=83.96  Aligned_cols=78  Identities=13%  Similarity=0.144  Sum_probs=66.5

Q ss_pred             cccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEE
Q 040805          371 DLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAY  450 (540)
Q Consensus       371 ~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~  450 (540)
                      .-++.+..+.+.||+...+|||+...++.||++|++.+.+-   +                      +.  ..|++||++
T Consensus        25 ~~~~~~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~---~----------------------~~--~~l~~Gd~~   77 (105)
T 1v70_A           25 SERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG---E----------------------EE--ALLAPGMAA   77 (105)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET---T----------------------EE--EEECTTCEE
T ss_pred             CCceEEEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC---C----------------------EE--EEeCCCCEE
Confidence            33688999999999999999998888999999999998751   2                      22  379999999


Q ss_pred             EECCCCeEEEEecCCCCEEEEEEEe
Q 040805          451 IVPAGHPVVTVASQNNNLEVVCFEI  475 (540)
Q Consensus       451 vVPaG~~h~~~n~~~e~l~~v~F~~  475 (540)
                      +||+|.+|.+.|.+++++.++.+.+
T Consensus        78 ~ip~~~~H~~~~~~~~~~~~~~v~~  102 (105)
T 1v70_A           78 FAPAGAPHGVRNESASPALLLVVTA  102 (105)
T ss_dssp             EECTTSCEEEECCSSSCEEEEEEEE
T ss_pred             EECCCCcEEeEeCCCCCEEEEEEeC
Confidence            9999999999998788888887644

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=98.87  E-value=8.1e-09  Score=92.34  Aligned_cols=72  Identities=19%  Similarity=0.331  Sum_probs=62.3

Q ss_pred             eeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          180 RLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       180 rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      -+..+++.||+...+|+|. ..+++||++|++.+.+    +..++.|++||+++||+|.+|++.|.+ +++++++++.
T Consensus        58 ~~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i----~~~~~~l~~Gd~i~i~~~~~H~~~n~~-~~~~~~l~v~  130 (133)
T 1o4t_A           58 LFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD----NGKDVPIKAGDVCFTDSGESHSIENTG-NTDLEFLAVI  130 (133)
T ss_dssp             EEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE----TTEEEEEETTEEEEECTTCEEEEECCS-SSCEEEEEEE
T ss_pred             EEEEEEECCCCccCceECCCccEEEEEEeCEEEEEE----CCEEEEeCCCcEEEECCCCcEEeEECC-CCCEEEEEEE
Confidence            3455699999988888886 6899999999999887    557899999999999999999999987 4688888775

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=98.86  E-value=1.2e-08  Score=96.68  Aligned_cols=77  Identities=9%  Similarity=-0.024  Sum_probs=61.9

Q ss_pred             ceeeeeeeCCCcccc---ccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeC-CCCccEEEEE
Q 040805          179 YRLGILIANPQTFVT---PTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNT-DDDEKLYIVK  254 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~---Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~-g~~e~l~~v~  254 (540)
                      +.+..+++.||+...   +|||+..|++||++|++.+.+=..+....+.|++||+++||+|++|++.|. + ++++++++
T Consensus       117 ~~~~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~~~~~~~~H~~~n~~~-~~~~~~l~  195 (198)
T 2bnm_A          117 LVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFTAAKG-TGSAKLIA  195 (198)
T ss_dssp             CEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEECTTCCEEEEESTT-SCCEEEEE
T ss_pred             ceEEEEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcccEEECCCCEEEeCCCCceEEEecCC-CCCeEEEE
Confidence            444555999998876   577888999999999999887111112789999999999999999999998 7 46888887


Q ss_pred             Ee
Q 040805          255 FI  256 (540)
Q Consensus       255 i~  256 (540)
                      ++
T Consensus       196 v~  197 (198)
T 2bnm_A          196 VN  197 (198)
T ss_dssp             EE
T ss_pred             Ee
Confidence            65

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=98.85  E-value=1.9e-08  Score=92.60  Aligned_cols=78  Identities=10%  Similarity=0.132  Sum_probs=67.7

Q ss_pred             cceEEEEEEcCCC-cccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          373 DITVSYANISKGA-MAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       373 ~isv~~~~L~pgg-m~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      ++.+..+.|.||+ ...+|||+...+++||++|++.+.+-   +                      +.  ..|++||+++
T Consensus        45 ~~~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~---~----------------------~~--~~l~~Gd~i~   97 (162)
T 3l2h_A           45 HMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTME---N----------------------DQ--YPIAPGDFVG   97 (162)
T ss_dssp             SEEEEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEET---T----------------------EE--EEECTTCEEE
T ss_pred             eEEEEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEEC---C----------------------EE--EEeCCCCEEE
Confidence            6889999999999 58999999999999999999999841   1                      22  4799999999


Q ss_pred             ECCC-CeEEEEecCCCCEEEEEEEecC
Q 040805          452 VPAG-HPVVTVASQNNNLEVVCFEINA  477 (540)
Q Consensus       452 VPaG-~~h~~~n~~~e~l~~v~F~~~a  477 (540)
                      ||+| .+|++.|.+++++.++++.+..
T Consensus        98 i~~~~~~H~~~n~~~~~~~~l~v~~p~  124 (162)
T 3l2h_A           98 FPCHAAAHSISNDGTETLVCLVIGQRL  124 (162)
T ss_dssp             ECTTSCCEEEECCSSSCEEEEEEEECC
T ss_pred             ECCCCceEEeEeCCCCCEEEEEEECCC
Confidence            9998 9999999888999998876554

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=98.85  E-value=1.1e-08  Score=90.30  Aligned_cols=76  Identities=18%  Similarity=0.267  Sum_probs=61.3

Q ss_pred             ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      ..+.++++.+.||+-... |.+.+|++||++|++++.+    +..++.|++||+++||+|+.|++.|.+  ++++++.+.
T Consensus        38 ~~~~~~~~~~~pG~~~~~-H~~~~E~~~Vl~G~~~~~~----~g~~~~l~~GD~v~ip~g~~H~~~~~~--~~~~~l~v~  110 (119)
T 3lwc_A           38 GPITIGYGRYAPGQSLTE-TMAVDDVMIVLEGRLSVST----DGETVTAGPGEIVYMPKGETVTIRSHE--EGALTAYVT  110 (119)
T ss_dssp             CCCEEEEEEECTTCEEEE-ECSSEEEEEEEEEEEEEEE----TTEEEEECTTCEEEECTTCEEEEEEEE--EEEEEEEEE
T ss_pred             CCEEEEEEEECCCCCcCc-cCCCCEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCEEEEEcCC--CCeEEEEEE
Confidence            345677779999986433 4489999999999999987    456899999999999999999998875  467777666


Q ss_pred             ecC
Q 040805          257 KSI  259 (540)
Q Consensus       257 ~~~  259 (540)
                      .|.
T Consensus       111 ~P~  113 (119)
T 3lwc_A          111 YPH  113 (119)
T ss_dssp             ECC
T ss_pred             CCC
Confidence            544

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=98.84  E-value=2.6e-09  Score=91.25  Aligned_cols=75  Identities=15%  Similarity=0.119  Sum_probs=60.4

Q ss_pred             cceeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEecCCc-eEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805          178 KYRLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIRENNR-ESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~~-~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i  255 (540)
                      .+|+..++++||+.+..|+|. ..+++||++|++++..  +++. ....|++||+++||+|+.|.+.|+| +.+|+||-+
T Consensus        16 ~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~--~d~~~~~~~l~~G~~~~ip~G~~H~~~N~g-~~pl~~IeV   92 (98)
T 3lag_A           16 EVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA--PDGTRSLAQLKTGRSYARKAGVQHDVRNES-TAEIVFLEI   92 (98)
T ss_dssp             SEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC--TTSCEECCCBCTTCCEEECTTCEEEEBCCS-SSCEEEEEE
T ss_pred             eEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe--CCCceEEEEecCCcEEEEcCCCcEECEECC-CCeEEEEEE
Confidence            466667799999998888775 4577788899987654  4433 5678999999999999999999998 579999876

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=98.83  E-value=1.2e-08  Score=96.37  Aligned_cols=76  Identities=11%  Similarity=0.067  Sum_probs=62.1

Q ss_pred             ceeeeeeeCCCcccc--ccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          179 YRLGILIANPQTFVT--PTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~--Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      +.+..+++.||+...  +||+...|++||++|++.+.+    +..++.|++||+++||+|++|++.|.+ ++++ +++++
T Consensus       104 ~~~~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~----~~~~~~l~~GD~i~i~~~~~H~~~n~~-~~~~-~l~v~  177 (192)
T 1y9q_A          104 LEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF----DEQWHELQQGEHIRFFSDQPHGYAAVT-EKAV-FQNIV  177 (192)
T ss_dssp             EEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE----TTEEEEECTTCEEEEECSSSEEEEESS-SCEE-EEEEE
T ss_pred             EEEEEEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE----CCEEEEeCCCCEEEEcCCCCeEeECCC-CCcE-EEEEE
Confidence            344455999998765  566778999999999999887    567899999999999999999999997 4678 77777


Q ss_pred             ecCC
Q 040805          257 KSIN  260 (540)
Q Consensus       257 ~~~~  260 (540)
                      .+..
T Consensus       178 ~~~~  181 (192)
T 1y9q_A          178 AYPR  181 (192)
T ss_dssp             ECCC
T ss_pred             ecCc
Confidence            5543

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=98.82  E-value=1.6e-08  Score=88.09  Aligned_cols=66  Identities=20%  Similarity=0.190  Sum_probs=53.3

Q ss_pred             CCccccc---cccCCCeEEEEEeeEEEEEEEecCCceE--EeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          188 PQTFVTP---THLDADAVFFVSWGQGTITVIRENNRES--YNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       188 Pggl~~P---h~~~A~ei~yV~~G~g~ig~V~~~~~~~--~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      +|....+   +|++.+|++||++|++++.+    +...  +.|++||.++||+|++|.+.|++++.++++++++.
T Consensus        39 ~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~----~~~~~~~~l~~Gd~i~ipa~~~H~~~n~~~~~~~~~l~v~~  109 (112)
T 2opk_A           39 NGQASPPGFWYDSPQDEWVMVVSGSAGIEC----EGDTAPRVMRPGDWLHVPAHCRHRVAWTDGGEPTVWLAVHC  109 (112)
T ss_dssp             SSCCCCTTCCBCCSSEEEEEEEESCEEEEE----TTCSSCEEECTTEEEEECTTCCEEEEEECSSSCEEEEEEEE
T ss_pred             CCccCCCCccccCCccEEEEEEeCeEEEEE----CCEEEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEE
Confidence            3444444   55688999999999999887    3345  89999999999999999999998555787788774

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=98.81  E-value=1.2e-08  Score=95.60  Aligned_cols=91  Identities=15%  Similarity=0.243  Sum_probs=67.2

Q ss_pred             cCCceEEEeccCccccccccccccceeeeeeeCC-Cccccccc-cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEE
Q 040805          155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANP-QTFVTPTH-LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIR  232 (540)
Q Consensus       155 ~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~P-ggl~~Ph~-~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~  232 (540)
                      +..+.+++..-|++...      .+-..+++|.| |+...|++ |++++++||++|++.+++    +..++.|.+||.++
T Consensus        70 ~~~~~~~fa~~fs~~~~------~~~~~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl----~g~~~~L~~Gds~~  139 (166)
T 2vpv_A           70 TKDENFALEIMFDKHKE------YFASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTV----CKNKFLSVKGSTFQ  139 (166)
T ss_dssp             ---CBCCCCEECCTTTC------SCEEEEEEECSSGGGCEEEECCSEEEEEEEEESEEEEEE----TTEEEEEETTCEEE
T ss_pred             CCCCCEEEEEeecCCcc------cceeEEEEECCCCCCCCCccCCCceEEEEEEEeEEEEEE----CCEEEEEcCCCEEE
Confidence            34455555444443222      23344558999 77666655 579999999999999998    66899999999999


Q ss_pred             ECCCCeEEEEeCCCCccEEEEEEe
Q 040805          233 VPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       233 iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      ||+|.+|.+.|.+ +++++++.+.
T Consensus       140 iP~g~~H~~~N~~-d~~Arll~Vq  162 (166)
T 2vpv_A          140 IPAFNEYAIANRG-NDEAKMFFVQ  162 (166)
T ss_dssp             ECTTCEEEEEECS-SSCEEEEEEE
T ss_pred             ECCCCCEEEEECC-CCCEEEEEEE
Confidence            9999999999998 4678777654

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=98.80  E-value=2.3e-08  Score=104.32  Aligned_cols=91  Identities=12%  Similarity=0.188  Sum_probs=72.3

Q ss_pred             CCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECC
Q 040805          156 QHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPS  235 (540)
Q Consensus       156 e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPa  235 (540)
                      +++.++.++..+. .+.++   .+...+..|.||+...||+|..++|+||++|+|+++|    +.+++++++||+++||+
T Consensus       249 ~G~~~~~~np~t~-~~~~~---ti~~~~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v----~~~~~~~~~GD~~~vP~  320 (354)
T 2d40_A          249 DGYKMRYVNPVTG-GYPMP---SMGAFLQLLPKGFASRVARTTDSTIYHVVEGSGQVII----GNETFSFSAKDIFVVPT  320 (354)
T ss_dssp             TBEEEEECCTTTS-SCSSS---SCEEEEEEECTTCBCCCBEESSCEEEEEEEEEEEEEE----TTEEEEEETTCEEEECT
T ss_pred             CCeEEEEeCCCcC-CCCCC---cceeEEEEECCCCCCCceecCCcEEEEEEeCeEEEEE----CCEEEEEcCCCEEEECC
Confidence            4667777754321 12333   3455566999999999999977799999999999998    45889999999999999


Q ss_pred             CCeEEEEeCCCCccEEEEEEee
Q 040805          236 GNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       236 G~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      ++.|++.|+   ++++++++.|
T Consensus       321 ~~~H~~~n~---e~~~l~~~~d  339 (354)
T 2d40_A          321 WHGVSFQTT---QDSVLFSFSD  339 (354)
T ss_dssp             TCCEEEEEE---EEEEEEEEES
T ss_pred             CCeEEEEeC---CCEEEEEEcC
Confidence            999999994   4788887753

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=98.80  E-value=2.1e-08  Score=100.55  Aligned_cols=79  Identities=15%  Similarity=0.217  Sum_probs=68.3

Q ss_pred             ccceeeeeeeCCCccccc-cccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805          177 EKYRLGILIANPQTFVTP-THLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~P-h~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i  255 (540)
                      ..+-+.+++++||+.... |+|..++.+||++|+|++.+    +...+.|++||++++|++.+||+.|+| +++|++| +
T Consensus       184 ~d~~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l----~~~~~~V~~GD~i~~~~~~~h~~~n~G-~e~~~yl-~  257 (266)
T 4e2q_A          184 YDFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRL----GDNWYPVQAGDVIWMAPFVPQWYAALG-KTRSRYL-L  257 (266)
T ss_dssp             CSEEEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEE----TTEEEEEETTCEEEECTTCCEEEEEES-SSCEEEE-E
T ss_pred             cceEEEEEEECCCcCcCCceEcccceEEEEEeceEEEEE----CCEEEEecCCCEEEECCCCcEEEEeCC-CCCEEEE-E
Confidence            467788899999999875 55778899999999999987    667899999999999999999999998 5799998 4


Q ss_pred             eecCCC
Q 040805          256 IKSINL  261 (540)
Q Consensus       256 ~~~~~~  261 (540)
                      ..+.|.
T Consensus       258 ykd~nr  263 (266)
T 4e2q_A          258 YKDVNR  263 (266)
T ss_dssp             EEECSS
T ss_pred             EccccC
Confidence            556664

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=98.80  E-value=1.8e-08  Score=89.47  Aligned_cols=81  Identities=12%  Similarity=0.084  Sum_probs=58.4

Q ss_pred             eeeeeeCCCccccccccCC-CeEEEEEeeEEEEEEEecCCc-eEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeec
Q 040805          181 LGILIANPQTFVTPTHLDA-DAVFFVSWGQGTITVIRENNR-ESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKS  258 (540)
Q Consensus       181 l~~~~l~Pggl~~Ph~~~A-~ei~yV~~G~g~ig~V~~~~~-~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~  258 (540)
                      +..+.+.||+...+|+|+. .+++||++|++.+.+    +. ..+.|++||+++||+|++|++.|.++  ++.+++++.+
T Consensus        45 ~~~~~~~~g~~~~~H~H~~~~E~~~vl~G~~~~~~----~~~~~~~l~~Gd~~~ip~g~~H~~~~~~~--~~~~l~~~~p  118 (134)
T 2o8q_A           45 VIRAIPGKEAKPTWHTHTVGFQLFYVLRGWVEFEY----EDIGAVMLEAGGSAFQPPGVRHRELRHSD--DLEVLEIVSP  118 (134)
T ss_dssp             EEEECC-----CCCEEECCSCEEEEEEESEEEEEE----TTTEEEEEETTCEEECCTTCCEEEEEECT--TCEEEEEESS
T ss_pred             EEEEecCCCCCCCCEECCCCcEEEEEEeCEEEEEE----CCcEEEEecCCCEEEECCCCcEEeEeCCC--CeEEEEEECC
Confidence            3333556888888888875 999999999998887    33 78999999999999999999999764  3677766644


Q ss_pred             CCCCCcccccccC
Q 040805          259 INLPGQYEAFYGA  271 (540)
Q Consensus       259 ~~~pg~~~~f~La  271 (540)
                      .    .+..+|+.
T Consensus       119 ~----~~~~~~~~  127 (134)
T 2o8q_A          119 A----GFATSVVD  127 (134)
T ss_dssp             T----TCCEEECC
T ss_pred             C----chheeehh
Confidence            3    34445543

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=98.80  E-value=4.7e-08  Score=83.15  Aligned_cols=79  Identities=15%  Similarity=0.137  Sum_probs=66.8

Q ss_pred             cccceEEEEEEcCCCccccc--ccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCc
Q 040805          371 DLDITVSYANISKGAMAAPF--YNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDS  448 (540)
Q Consensus       371 ~l~isv~~~~L~pggm~~PH--~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD  448 (540)
                      .-++.+..+.+.||+...+|  ||++..+++||++|++.+.+   ++                      +.  ..|++||
T Consensus        18 ~~~~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~---~~----------------------~~--~~l~~Gd   70 (113)
T 2gu9_A           18 LRQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV---DG----------------------HT--QALQAGS   70 (113)
T ss_dssp             ETTEEEEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE---TT----------------------EE--EEECTTE
T ss_pred             CCcEEEEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE---CC----------------------EE--EEeCCCC
Confidence            34688999999999999988  99879999999999999886   22                      22  3799999


Q ss_pred             EEEECCCCeEEEEecCCCCEEEEEEEec
Q 040805          449 AYIVPAGHPVVTVASQNNNLEVVCFEIN  476 (540)
Q Consensus       449 V~vVPaG~~h~~~n~~~e~l~~v~F~~~  476 (540)
                      +++||+|.+|.+.|.+++++.++.+...
T Consensus        71 ~~~i~~~~~H~~~~~~~~~~~~~~v~~~   98 (113)
T 2gu9_A           71 LIAIERGQAHEIRNTGDTPLKTVNFYHP   98 (113)
T ss_dssp             EEEECTTCCEEEECCSSSCEEEEEEEES
T ss_pred             EEEECCCCcEEeEcCCCCCEEEEEEECC
Confidence            9999999999999987888888776443

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=98.79  E-value=1e-08  Score=96.61  Aligned_cols=78  Identities=17%  Similarity=0.144  Sum_probs=65.9

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      ...+.+++|.||+...+|+|...+++||++|++.+.+   +..+++.|++||++ ||+|++|.+.|.+ ++++++++++.
T Consensus        78 G~~~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l---d~ge~~~L~~GDsi-~~~g~~H~~~N~g-~~~ar~l~V~~  152 (172)
T 3es1_A           78 GSVIRVVDMLPGKESPMHRTNSIDYGIVLEGEIELEL---DDGAKRTVRQGGII-VQRGTNHLWRNTT-DKPCRIAFILI  152 (172)
T ss_dssp             SEEEEEEEECTTCBCCCBCCSEEEEEEEEESCEEEEC---GGGCEEEECTTCEE-EECSCCBEEECCS-SSCEEEEEEEE
T ss_pred             CeEEEEEEECCCCCCCCeecCceEEEEEEeCEEEEEE---CCCeEEEECCCCEE-EeCCCcEEEEeCC-CCCEEEEEEEc
Confidence            3445566999999988888888899999999998876   22467999999999 9999999999998 56899999886


Q ss_pred             cCC
Q 040805          258 SIN  260 (540)
Q Consensus       258 ~~~  260 (540)
                      +..
T Consensus       153 P~~  155 (172)
T 3es1_A          153 EAP  155 (172)
T ss_dssp             ECC
T ss_pred             CCC
Confidence            554

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=98.77  E-value=2.9e-08  Score=85.59  Aligned_cols=71  Identities=11%  Similarity=0.294  Sum_probs=60.3

Q ss_pred             ceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      +.+.++.+.||....+|+|...+++||++|++.+.+    +..++.|++||+++||+|++|.+.|.+   ++.++.+.
T Consensus        38 ~~~~~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i----~~~~~~l~~Gd~i~i~~~~~H~~~~~~---~~~~~~i~  108 (114)
T 2ozj_A           38 VQISLFSFADGESVSEEEYFGDTLYLILQGEAVITF----DDQKIDLVPEDVLMVPAHKIHAIAGKG---RFKMLQIT  108 (114)
T ss_dssp             EEEEEEEEETTSSCCCBCCSSCEEEEEEEEEEEEEE----TTEEEEECTTCEEEECTTCCBEEEEEE---EEEEEEEE
T ss_pred             ceEEEEEECCCCccccEECCCCeEEEEEeCEEEEEE----CCEEEEecCCCEEEECCCCcEEEEeCC---CcEEEEEE
Confidence            446666789998888899999999999999999887    557899999999999999999999963   56666555

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=98.76  E-value=2.4e-08  Score=92.09  Aligned_cols=85  Identities=16%  Similarity=0.271  Sum_probs=67.7

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      ++.+..+.|.||+...+|||+ ..+++||++|++.+.+-......       .         .  +.-...|++||+++|
T Consensus        40 ~~~~~~~~~~pg~~~~~H~H~-~~E~~~Vl~G~~~~~~~~~~~~~-------~---------~--~~~~~~l~~Gd~i~i  100 (163)
T 1lr5_A           40 EVEVWLQTISPGQRTPIHRHS-CEEVFTVLKGKGTLLMGSSSLKY-------P---------G--QPQEIPFFQNTTFSI  100 (163)
T ss_dssp             SEEEEEEEECTTCBCCEEEES-SCEEEEEEECCEEEEECCSSSSS-------C---------C--SCEEEEECTTEEEEE
T ss_pred             cEEEEEEEECCCCcCCCeECC-CCeEEEEEeCEEEEEECCccccc-------c---------C--ccEEEEeCCCCEEEE
Confidence            588899999999999999995 67899999999999876532100       0         0  112247999999999


Q ss_pred             CCCCeEEEEecC-CCCEEEEEEEec
Q 040805          453 PAGHPVVTVASQ-NNNLEVVCFEIN  476 (540)
Q Consensus       453 PaG~~h~~~n~~-~e~l~~v~F~~~  476 (540)
                      |+|.+|.+.|.+ ++++.++++...
T Consensus       101 p~~~~H~~~n~~~~~~~~~l~i~~~  125 (163)
T 1lr5_A          101 PVNDPHQVWNSDEHEDLQVLVIISR  125 (163)
T ss_dssp             CTTCCEEEECCCSSSCEEEEEEEES
T ss_pred             CCCCcEEeEeCCCCCCEEEEEEECC
Confidence            999999999988 888998877544

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=98.75  E-value=2.3e-08  Score=98.59  Aligned_cols=76  Identities=8%  Similarity=-0.039  Sum_probs=66.0

Q ss_pred             ceeeeeeeCC-CccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          179 YRLGILIANP-QTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       179 ~rl~~~~l~P-ggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      +.+.++++.| |+...+|+|...+++||++|++.+.+    +...+.|++||+++||+|.+|.+.|.+ +++++++.++.
T Consensus       145 ~~~~~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i----~~~~~~l~~Gd~i~ip~~~~H~~~n~~-~~~~~~l~v~~  219 (243)
T 3h7j_A          145 VEIMLAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTV----EGCTVEMKFGTAYFCEPREDHGAINRS-EKESKSINIFF  219 (243)
T ss_dssp             EEEEEEEECTTTEEEEEECCSSEEEEEECSSCEEEEE----TTEEEEECTTCEEEECTTCCEEEEECS-SSCEEEEEEEE
T ss_pred             eEEEEEEECCCCCcCCCEeCCCcEEEEEEECEEEEEE----CCEEEEECCCCEEEECCCCcEEeEeCC-CCCEEEEEEEc
Confidence            4566778999 88778888888999999999999887    457889999999999999999999998 56899998886


Q ss_pred             cC
Q 040805          258 SI  259 (540)
Q Consensus       258 ~~  259 (540)
                      |.
T Consensus       220 p~  221 (243)
T 3h7j_A          220 PP  221 (243)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=98.75  E-value=1e-08  Score=101.40  Aligned_cols=77  Identities=16%  Similarity=0.136  Sum_probs=61.0

Q ss_pred             ceeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEe---cC-Cce------------EEeeCCCcEEEECCCCeEEE
Q 040805          179 YRLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIR---EN-NRE------------SYNVKRGDIIRVPSGNTFYV  241 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~---~~-~~~------------~~~l~~GDv~~iPaG~~h~~  241 (540)
                      +.+..+++.||+...||+|. .+|++||++|++.+.+-.   ++ +..            ++.+++||+++||+|++|++
T Consensus        43 ~~~~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~H~~  122 (239)
T 2xlg_A           43 FAIAHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYMHGF  122 (239)
T ss_dssp             EEEEEEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEEEEE
T ss_pred             EEEEEEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEEECCCCCEEE
Confidence            44555699999988999876 899999999999886510   00 122            78999999999999999999


Q ss_pred             EeCCCCccEEE-EEEe
Q 040805          242 TNTDDDEKLYI-VKFI  256 (540)
Q Consensus       242 ~N~g~~e~l~~-v~i~  256 (540)
                      .|.++ +++++ +.++
T Consensus       123 ~N~~~-~~~~~~l~~~  137 (239)
T 2xlg_A          123 VNPTD-KTLPIVFVWM  137 (239)
T ss_dssp             ECCSS-SCEEEEEEEE
T ss_pred             EeCCC-CCEEEEEEEE
Confidence            99984 67887 5555

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=98.75  E-value=6.1e-08  Score=89.39  Aligned_cols=76  Identities=14%  Similarity=0.231  Sum_probs=61.1

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      .+.++++++. ++- .|+|++.+|++||++|++.+.+    +..++.|++||+++||+|+.|.+.|.   ++++++++..
T Consensus        65 ~~s~g~~~~e-~~~-~~~~~~~eE~~yVLeG~~~l~i----~g~~~~l~~GD~i~iP~G~~h~~~n~---~~a~~l~V~~  135 (151)
T 4axo_A           65 RLGCGMMEMK-ETT-FDWTLNYDEIDYVIDGTLDIII----DGRKVSASSGELIFIPKGSKIQFSVP---DYARFIYVTY  135 (151)
T ss_dssp             SCEEEEEEEE-EEE-EEEECSSEEEEEEEEEEEEEEE----TTEEEEEETTCEEEECTTCEEEEEEE---EEEEEEEEEE
T ss_pred             cEEEEEEEEc-Ccc-ccEeCCCcEEEEEEEeEEEEEE----CCEEEEEcCCCEEEECCCCEEEEEeC---CCEEEEEEEC
Confidence            4566777776 333 5566789999999999999986    44689999999999999999999996   4688888887


Q ss_pred             cCCCC
Q 040805          258 SINLP  262 (540)
Q Consensus       258 ~~~~p  262 (540)
                      |...+
T Consensus       136 P~~~~  140 (151)
T 4axo_A          136 PADWA  140 (151)
T ss_dssp             CSCC-
T ss_pred             CCCcc
Confidence            76654

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=98.74  E-value=3.7e-08  Score=83.65  Aligned_cols=75  Identities=12%  Similarity=0.195  Sum_probs=59.2

Q ss_pred             cceeeeeeeCCCccccccccCC-CeE-EEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805          178 KYRLGILIANPQTFVTPTHLDA-DAV-FFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A-~ei-~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i  255 (540)
                      .+.+..+.+.||....+|+|+. .++ +||++|++.+.+   ++..++.|++||+++||+|.+|++.|.++   ..++.+
T Consensus        32 ~~~~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~---~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~---~~~l~~  105 (110)
T 2q30_A           32 NFKIVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG---DGDAVIPAPRGAVLVAPISTPHGVRAVTD---MKVLVT  105 (110)
T ss_dssp             SCEEEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEEC---GGGCEEEECTTEEEEEETTSCEEEEESSS---EEEEEE
T ss_pred             CEEEEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEe---CCCEEEEECCCCEEEeCCCCcEEEEEcCC---cEEEEE
Confidence            3455666899999888888875 688 899999998876   21468999999999999999999999862   455555


Q ss_pred             eec
Q 040805          256 IKS  258 (540)
Q Consensus       256 ~~~  258 (540)
                      +.|
T Consensus       106 ~~p  108 (110)
T 2q30_A          106 IAP  108 (110)
T ss_dssp             EES
T ss_pred             ECC
Confidence            533

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=98.72  E-value=2.1e-08  Score=99.16  Aligned_cols=93  Identities=13%  Similarity=0.098  Sum_probs=67.6

Q ss_pred             cccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEE---cCCCCCCcccccccCCCccccCCccceEEeeeeCCC
Q 040805          371 DLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIA---CPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTD  447 (540)
Q Consensus       371 ~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G  447 (540)
                      +.++++..+.+.||+...||||+++.|+.||++|++.+.+-   .|+...       +   .-......-+.+...|++|
T Consensus        40 ~~~~~~~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~-------~---~~~~~~~~~~~~~~~l~~G  109 (239)
T 2xlg_A           40 DIGFAIAHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDE-------L---PVVGGAGRGDLYSIQSEPK  109 (239)
T ss_dssp             TEEEEEEEEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTS-------C---CSTTTTCCEEEEEEECCTT
T ss_pred             CCCEEEEEEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCC-------c---ccccccccCceeEEEECCC
Confidence            34688999999999999999999999999999999999761   111000       0   0000000013445689999


Q ss_pred             cEEEECCCCeEEEEecCCCCEEE-EEE
Q 040805          448 SAYIVPAGHPVVTVASQNNNLEV-VCF  473 (540)
Q Consensus       448 DV~vVPaG~~h~~~n~~~e~l~~-v~F  473 (540)
                      |+++||+|.+|.+.|.+++++.+ +.+
T Consensus       110 D~i~iP~g~~H~~~N~~~~~~~~~l~~  136 (239)
T 2xlg_A          110 QLIYSPNHYMHGFVNPTDKTLPIVFVW  136 (239)
T ss_dssp             EEEEECTTEEEEEECCSSSCEEEEEEE
T ss_pred             CEEEECCCCCEEEEeCCCCCEEEEEEE
Confidence            99999999999999988888777 444

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=98.72  E-value=1.3e-08  Score=86.92  Aligned_cols=78  Identities=13%  Similarity=0.160  Sum_probs=66.0

Q ss_pred             ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      -.+.+.+++|.||+-...|+|+...++.||+.|++.+..  +++.                      .....|++||+++
T Consensus        15 ~~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~--~d~~----------------------~~~~~l~~G~~~~   70 (98)
T 3lag_A           15 DEVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA--PDGT----------------------RSLAQLKTGRSYA   70 (98)
T ss_dssp             SSEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC--TTSC----------------------EECCCBCTTCCEE
T ss_pred             CeEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe--CCCc----------------------eEEEEecCCcEEE
Confidence            368899999999999999999999999999999998763  3331                      1234789999999


Q ss_pred             ECCCCeEEEEecCCCCEEEEEE
Q 040805          452 VPAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       452 VPaG~~h~~~n~~~e~l~~v~F  473 (540)
                      ||+|..|.+.|.++.+|.||.+
T Consensus        71 ip~G~~H~~~N~g~~pl~~IeV   92 (98)
T 3lag_A           71 RKAGVQHDVRNESTAEIVFLEI   92 (98)
T ss_dssp             ECTTCEEEEBCCSSSCEEEEEE
T ss_pred             EcCCCcEECEECCCCeEEEEEE
Confidence            9999999999999999999876

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=98.71  E-value=7.4e-08  Score=96.64  Aligned_cols=76  Identities=20%  Similarity=0.179  Sum_probs=65.1

Q ss_pred             cceeeeeeeCCCccccc-cccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          178 KYRLGILIANPQTFVTP-THLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~P-h~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      .+.+.++++.||+...+ |+|...+++||++|++.+.+    +...+.|++||+++||+|++|++.|.++.++++++++.
T Consensus       181 ~~~~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i----~~~~~~l~~GD~i~i~~~~~H~~~n~~~~~~~~~l~~~  256 (274)
T 1sef_A          181 DMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL----DNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSK  256 (274)
T ss_dssp             SEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE----TTEEEEEETTCEEEECTTCCEEEEEECSSSCEEEEEEE
T ss_pred             CEEEEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCCEEEEeCCCCCCEEEEEEE
Confidence            44566679999998776 88889999999999999988    55789999999999999999999999842689888765


Q ss_pred             e
Q 040805          257 K  257 (540)
Q Consensus       257 ~  257 (540)
                      +
T Consensus       257 ~  257 (274)
T 1sef_A          257 D  257 (274)
T ss_dssp             E
T ss_pred             c
Confidence            3

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=98.71  E-value=6.4e-08  Score=89.65  Aligned_cols=93  Identities=14%  Similarity=0.147  Sum_probs=68.7

Q ss_pred             eeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccC-CCeEEEEEe--eEEEEEEEecCCceEEeeCCC
Q 040805          152 RVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLD-ADAVFFVSW--GQGTITVIRENNRESYNVKRG  228 (540)
Q Consensus       152 ~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~--G~g~ig~V~~~~~~~~~l~~G  228 (540)
                      ..+...|..+.+  |.. ...++      +.+..+.+++...+|||. .+|++||++  |++.+.+    +.+.+.|++|
T Consensus        27 ~~~~~~G~srR~--l~~-~~~fp------~sv~~v~~g~~~~~H~H~~~~E~~yVLe~~G~g~v~i----dge~~~l~~G   93 (157)
T 4h7l_A           27 AVACPCGWAQRA--FGH-DAGTS------VSVHYTQITKAARTHYHREHQEIYVVLDHAAHATIEL----NGQSYPLTKL   93 (157)
T ss_dssp             CEEETTEEEEEE--SCG-GGCCS------CEEEEEEECSCCCCBBCSSCEEEEEEEEECTTCEEEE----TTEEEECCTT
T ss_pred             CccCCCCeeeEE--eEc-CCCCc------EEEEEEeCCCCccceECCCCcEEEEEEecCcEEEEEE----CCEEEEeCCC
Confidence            456777888776  332 22222      222233445556788884 689999999  9999988    5578999999


Q ss_pred             cEEEECCCCeEEEEeCCCCccEEEEEEeecCCCC
Q 040805          229 DIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLP  262 (540)
Q Consensus       229 Dv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~p  262 (540)
                      |+++||+|+.|++.+     ++++|+++.|...+
T Consensus        94 D~v~IPpg~~H~i~g-----~l~~L~I~~Pp~~~  122 (157)
T 4h7l_A           94 LAISIPPLVRHRIVG-----EATIINIVSPPFDP  122 (157)
T ss_dssp             EEEEECTTCCEEEES-----CEEEEEEEESSCCT
T ss_pred             CEEEECCCCeEeeEC-----CEEEEEEECCCCCC
Confidence            999999999999973     59999999777654

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=98.70  E-value=4.1e-08  Score=97.64  Aligned_cols=78  Identities=17%  Similarity=0.093  Sum_probs=62.9

Q ss_pred             ceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          179 YRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      +.+.++++.||+...+|+| ...|++||++|++.+.+    +...+.|++||+++||+|.+|++.|.+++++++++.+.+
T Consensus       179 ~~~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i----~~~~~~l~~GD~i~~~~~~~H~~~n~g~~~~~~~l~~~d  254 (261)
T 1rc6_A          179 MNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNL----DNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKD  254 (261)
T ss_dssp             EEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEES----SSCEEEEETTCEEEECSSEEEEEEEC----CEEEEEEEE
T ss_pred             eEEEEEEECCCCccCcccCCCceEEEEEEEeEEEEEE----CCEEEEeCCCCEEEECCCCcEEeEeCCCCcCEEEEEEec
Confidence            4456779999998777876 57899999999998887    457899999999999999999999998427899987764


Q ss_pred             cCCC
Q 040805          258 SINL  261 (540)
Q Consensus       258 ~~~~  261 (540)
                       .|.
T Consensus       255 -~~r  257 (261)
T 1rc6_A          255 -CNR  257 (261)
T ss_dssp             -CSC
T ss_pred             -CCC
Confidence             443

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=98.70  E-value=4.7e-08  Score=82.35  Aligned_cols=77  Identities=17%  Similarity=0.182  Sum_probs=65.0

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      ++.+..++|.||+-..+|.|+...+++||++|++.+.+-.  +                      . -...|.+||++++
T Consensus        17 ~~~~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~--g----------------------~-~~~~l~~Gd~~~~   71 (97)
T 2fqp_A           17 RVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPE--G----------------------S-VTSQLTRGVSYTR   71 (97)
T ss_dssp             SEEEEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETT--E----------------------E-EEEEECTTCCEEE
T ss_pred             eEEEEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCC--C----------------------C-EEEEEcCCCEEEe
Confidence            6889999999999999999988778999999999987522  1                      0 1246999999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEEE
Q 040805          453 PAGHPVVTVASQNNNLEVVCFE  474 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F~  474 (540)
                      |+|.+|...|.+++++.++.+.
T Consensus        72 p~~~~H~~~N~g~~~~~~l~v~   93 (97)
T 2fqp_A           72 PEGVEHNVINPSDTEFVFVEIE   93 (97)
T ss_dssp             CTTCEEEEECCSSSCEEEEEEE
T ss_pred             CCCCcccCEeCCCCcEEEEEEE
Confidence            9999999999988899888764

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=98.69  E-value=4.7e-08  Score=88.07  Aligned_cols=73  Identities=16%  Similarity=0.223  Sum_probs=59.7

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      .+.++++++.||  ..|+|++.+|++||++|++.+.+    +..++.|++||+++||+|++|.+.|.   +++++++++.
T Consensus        56 ~~~~~~~~~~pG--~~~~h~~~~E~~~VLeG~~~l~~----~g~~~~l~~GD~i~~p~g~~h~~~~~---~~~~~l~v~~  126 (133)
T 2pyt_A           56 SMAAGFMQWDNA--FFPWTLNYDEIDMVLEGELHVRH----EGETMIAKAGDVMFIPKGSSIEFGTP---TSVRFLYVAW  126 (133)
T ss_dssp             SSEEEEEEEEEE--EEEEECSSEEEEEEEEEEEEEEE----TTEEEEEETTCEEEECTTCEEEEEEE---EEEEEEEEEE
T ss_pred             cEEEEEEEECCC--CccccCCCCEEEEEEECEEEEEE----CCEEEEECCCcEEEECCCCEEEEEeC---CCEEEEEEEc
Confidence            466777899999  33445578999999999999887    46788999999999999999999884   3688887775


Q ss_pred             cC
Q 040805          258 SI  259 (540)
Q Consensus       258 ~~  259 (540)
                      |.
T Consensus       127 p~  128 (133)
T 2pyt_A          127 PA  128 (133)
T ss_dssp             ST
T ss_pred             CC
Confidence            43

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=98.69  E-value=8e-07  Score=83.96  Aligned_cols=161  Identities=7%  Similarity=-0.012  Sum_probs=99.9

Q ss_pred             ccCCHHHHHHhcCCCHHHHHHHhccCC-CCcEEEccchhhhccCCCCCCCCcCCCCCC----CCceeEcCC--CCC---c
Q 040805          281 RAFSWEILESAFKTKRDSLERVLFQQD-QGAMVKASKQQIRALSRSQEGPSIWPFAGE----SRGTFNLFG--KRP---S  350 (540)
Q Consensus       281 ~~f~~evLa~Af~v~~~~v~~l~~~q~-~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~----~~~~fnL~~--~~P---~  350 (540)
                      .+++..-||+..|++..++.++-.... ..     +.+.|..+.......-.|=+.+.    ...++-+..  ..+   .
T Consensus        22 ~g~s~~~la~~~gis~~~ls~~e~g~~~~p-----~~~~l~~ia~~l~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~   96 (198)
T 2bnm_A           22 VKMDHAALASLLGETPETVAAWENGEGGEL-----TLTQLGRIAHVLGTSIGALTPPAGNDLDDGVIIQMPDERPILKGV   96 (198)
T ss_dssp             TTCCHHHHHHHHTCCHHHHHHHHTTTCTTC-----BHHHHHHHHHHTTSCTGGGSCCCCCCCBTTBCCCCGGGCCEECCS
T ss_pred             cCCCHHHHHHHHCcCHHHHHHHHcCCCCCC-----CHHHHHHHHHHhCCCHHHEEccCCCCcccCceEEeeccccccccc
Confidence            478899999999999999999987653 21     11112111110000000101111    111222222  112   2


Q ss_pred             ccCCCceEEEecCCCCCCCccccceEEEEEEcCCCccc---ccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCC
Q 040805          351 HSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAA---PFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGS  427 (540)
Q Consensus       351 ~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~---PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~  427 (540)
                      .....|..+.+-..   ......+.+..++|.||+...   +|||+. .+++||++|++.+.+-....            
T Consensus        97 ~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~pg~~~~~~~~h~h~~-~E~~~Vl~G~~~~~~~~~~~------------  160 (198)
T 2bnm_A           97 RDNVDYYVYNCLVR---TKRAPSLVPLVVDVLTDNPDDAKFNSGHAG-NEFLFVLEGEIHMKWGDKEN------------  160 (198)
T ss_dssp             TTCSTTEEEEECCC---CTTSTTCEEEEEEECCCCGGGCCCCCCCSS-CEEEEEEESCEEEEESCTTS------------
T ss_pred             ccCCCceEEEeecc---CCCCCcceEEEEEEcCCCCCcccccccCCC-eEEEEEEeeeEEEEECCcCC------------
Confidence            23445544444332   233446889999999999987   588865 89999999999998733111            


Q ss_pred             CccccCCccceEEeeeeCCCcEEEECCCCeEEEEec-CCCCEEEEEE
Q 040805          428 STREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS-QNNNLEVVCF  473 (540)
Q Consensus       428 ~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~-~~e~l~~v~F  473 (540)
                                 .-...|++||.++||++.+|.+.|. +++++.++++
T Consensus       161 -----------~~~~~l~~GD~~~~~~~~~H~~~n~~~~~~~~~l~v  196 (198)
T 2bnm_A          161 -----------PKEALLPTGASMFVEEHVPHAFTAAKGTGSAKLIAV  196 (198)
T ss_dssp             -----------CEEEEECTTCEEEECTTCCEEEEESTTSCCEEEEEE
T ss_pred             -----------cccEEECCCCEEEeCCCCceEEEecCCCCCeEEEEE
Confidence                       1124799999999999999999998 8888888765

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=98.69  E-value=1.2e-07  Score=88.36  Aligned_cols=78  Identities=14%  Similarity=0.148  Sum_probs=66.7

Q ss_pred             ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      .++.+..+.|.||+...+|||+ ..+++||++|++.+.+-   +                      +.  ..|++||+++
T Consensus        54 ~~~~~~~~~l~pG~~~~~H~H~-~~E~~~Vl~G~~~~~i~---~----------------------~~--~~l~~Gd~i~  105 (167)
T 3ibm_A           54 PAFETRYFEVEPGGYTTLERHE-HTHVVMVVRGHAEVVLD---D----------------------RV--EPLTPLDCVY  105 (167)
T ss_dssp             SSEEEEEEEECTTCBCCCBBCS-SCEEEEEEESEEEEEET---T----------------------EE--EEECTTCEEE
T ss_pred             CcEEEEEEEECCCCCCCCccCC-CcEEEEEEeCEEEEEEC---C----------------------EE--EEECCCCEEE
Confidence            3688999999999999999995 89999999999998752   1                      22  4799999999


Q ss_pred             ECCCCeEEEEecC-CCCEEEEEEEecC
Q 040805          452 VPAGHPVVTVASQ-NNNLEVVCFEINA  477 (540)
Q Consensus       452 VPaG~~h~~~n~~-~e~l~~v~F~~~a  477 (540)
                      ||+|.+|.+.|.+ ++++.++++....
T Consensus       106 ip~~~~H~~~n~~~~~~~~~l~i~~~~  132 (167)
T 3ibm_A          106 IAPHAWHQIHATGANEPLGFLCIVDSD  132 (167)
T ss_dssp             ECTTCCEEEEEESSSCCEEEEEEEESS
T ss_pred             ECCCCcEEEEeCCCCCCEEEEEEEeCC
Confidence            9999999999988 8899998875443

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=98.68  E-value=6.4e-08  Score=102.13  Aligned_cols=77  Identities=17%  Similarity=0.249  Sum_probs=66.8

Q ss_pred             ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      ..+.+.+..|.||+...||.|..++++||++|+|.+.+    +.+++.+++||+|+||+|..|.+.|++.+++++++++.
T Consensus       292 ~tl~~~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V----~ge~~~~~~GD~~~iP~g~~H~~~N~g~~e~~~ll~i~  367 (394)
T 3bu7_A          292 LTMGASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV----GGKRFDWSEHDIFCVPAWTWHEHCNTQERDDACLFSFN  367 (394)
T ss_dssp             SSCEEEEEEECTTCBCCCEEESSCEEEEEEECCEEEEE----TTEEEEECTTCEEEECTTCCEEEEECCSSCCEEEEEEE
T ss_pred             CeeeEEEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE----CCEEEEEeCCCEEEECCCCeEEeEeCCCCCCeEEEEee
Confidence            34566778999999999998988899999999997776    55789999999999999999999998745689988876


Q ss_pred             e
Q 040805          257 K  257 (540)
Q Consensus       257 ~  257 (540)
                      +
T Consensus       368 D  368 (394)
T 3bu7_A          368 D  368 (394)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=98.67  E-value=1.5e-07  Score=81.53  Aligned_cols=76  Identities=11%  Similarity=0.223  Sum_probs=63.6

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEee-eeCCCcEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSS-RIRTDSAYI  451 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~GDV~v  451 (540)
                      ++.+..+.+.||+...+||| ...+++||++|++.+.+   ++                      +.  . .|++||+++
T Consensus        26 ~~~~~~~~~~pg~~~~~H~H-~~~e~~~Vl~G~~~~~i---~~----------------------~~--~~~l~~Gd~i~   77 (117)
T 2b8m_A           26 HVQINHIVLPRGEQMPKHYS-NSYVHLIIIKGEMTLTL---ED----------------------QE--PHNYKEGNIVY   77 (117)
T ss_dssp             SCEEEEEEEETTCBCCCEEC-SSCEEEEEEESEEEEEE---TT----------------------SC--CEEEETTCEEE
T ss_pred             ceEEEEEEECCCCcCCCEeC-CCcEEEEEEeCEEEEEE---CC----------------------EE--EEEeCCCCEEE
Confidence            56788899999999999999 57899999999999986   22                      11  3 689999999


Q ss_pred             ECCCCeEEEEecCCCCEEEEEEEec
Q 040805          452 VPAGHPVVTVASQNNNLEVVCFEIN  476 (540)
Q Consensus       452 VPaG~~h~~~n~~~e~l~~v~F~~~  476 (540)
                      ||+|.+|.+.|.++.++.++++...
T Consensus        78 ip~~~~H~~~~~~~~~~~~l~i~~~  102 (117)
T 2b8m_A           78 VPFNVKMLIQNINSDILEFFVVKAP  102 (117)
T ss_dssp             ECTTCEEEEECCSSSEEEEEEEECS
T ss_pred             ECCCCcEEeEcCCCCCEEEEEEECC
Confidence            9999999999988888888877444

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=98.65  E-value=2e-07  Score=81.70  Aligned_cols=75  Identities=8%  Similarity=0.148  Sum_probs=64.3

Q ss_pred             ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      ..+.+..+.+.||+...|||| +..+|.||++|++.+.+   ++                      +.  ..|++||+++
T Consensus        32 ~~~~~~~~~~~pg~~~~~H~H-~~~Ei~~v~~G~~~~~i---~~----------------------~~--~~l~~Gd~~~   83 (128)
T 4i4a_A           32 TPFGGAWCIVRPETKSFRHSH-NEYELFIVIQGNAIIRI---ND----------------------ED--FPVTKGDLII   83 (128)
T ss_dssp             CSSEEEEEEECTTEECCCBCC-SSEEEEEEEESEEEEEE---TT----------------------EE--EEEETTCEEE
T ss_pred             CCcEEEEEEECCCCccCCEec-CCeEEEEEEeCEEEEEE---CC----------------------EE--EEECCCcEEE
Confidence            368899999999999999999 68999999999999986   22                      22  3799999999


Q ss_pred             ECCCCeEEEEecCCCCEEEEEEE
Q 040805          452 VPAGHPVVTVASQNNNLEVVCFE  474 (540)
Q Consensus       452 VPaG~~h~~~n~~~e~l~~v~F~  474 (540)
                      ||+|.+|.+.|.+++++.++++.
T Consensus        84 i~~~~~H~~~~~~~~~~~~~~i~  106 (128)
T 4i4a_A           84 IPLDSEHHVINNNQEDFHFYTIW  106 (128)
T ss_dssp             ECTTCCEEEEECSSSCEEEEEEE
T ss_pred             ECCCCcEEeEeCCCCCEEEEEEE
Confidence            99999999999878888876653

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=98.64  E-value=2e-07  Score=81.53  Aligned_cols=73  Identities=14%  Similarity=0.211  Sum_probs=61.8

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      ++.+.++.+.||+...+|||+. .+++||++|++.+.+   ++                      +.  ..|++||+++|
T Consensus        40 ~~~~~~~~~~pg~~~~~H~H~~-~e~~~vl~G~~~~~~---~~----------------------~~--~~l~~Gd~~~i   91 (126)
T 4e2g_A           40 NLMLNWVRIEPNTEMPAHEHPH-EQAGVMLEGTLELTI---GE----------------------ET--RVLRPGMAYTI   91 (126)
T ss_dssp             SCEEEEEEECTTCEEEEECCSS-EEEEEEEEECEEEEE---TT----------------------EE--EEECTTEEEEE
T ss_pred             CeEEEEEEECCCCcCCCccCCC-ceEEEEEEeEEEEEE---CC----------------------EE--EEeCCCCEEEE
Confidence            6889999999999999999985 899999999999976   22                      22  47999999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEEE
Q 040805          453 PAGHPVVTVASQNNNLEVVCFE  474 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F~  474 (540)
                      |+|.+|.+.|.++ +..++.+.
T Consensus        92 p~~~~H~~~~~~~-~~~~l~v~  112 (126)
T 4e2g_A           92 PGGVRHRARTFED-GCLVLDIF  112 (126)
T ss_dssp             CTTCCEEEECCTT-CEEEEEEE
T ss_pred             CCCCcEEeEECCC-CEEEEEEE
Confidence            9999999999866 66666543

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=98.64  E-value=3.4e-07  Score=81.68  Aligned_cols=74  Identities=11%  Similarity=0.179  Sum_probs=63.7

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      .+.+..+.+.||+...||||+...+++||++|++.+.+-   +                      +.  ..|++||+++|
T Consensus        56 ~~~~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~---~----------------------~~--~~l~~Gd~i~i  108 (133)
T 1o4t_A           56 ARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDN---G----------------------KD--VPIKAGDVCFT  108 (133)
T ss_dssp             EEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEET---T----------------------EE--EEEETTEEEEE
T ss_pred             eEEEEEEEECCCCccCceECCCccEEEEEEeCEEEEEEC---C----------------------EE--EEeCCCcEEEE
Confidence            467889999999999999997789999999999998752   2                      22  37999999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEE
Q 040805          453 PAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F  473 (540)
                      |+|.+|.+.|.+++++.++++
T Consensus       109 ~~~~~H~~~n~~~~~~~~l~v  129 (133)
T 1o4t_A          109 DSGESHSIENTGNTDLEFLAV  129 (133)
T ss_dssp             CTTCEEEEECCSSSCEEEEEE
T ss_pred             CCCCcEEeEECCCCCEEEEEE
Confidence            999999999988888887765

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=98.62  E-value=1.6e-07  Score=87.15  Aligned_cols=99  Identities=11%  Similarity=0.047  Sum_probs=76.4

Q ss_pred             CcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcc-cccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCC
Q 040805          349 PSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMA-APFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGS  427 (540)
Q Consensus       349 P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~-~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~  427 (540)
                      |......|..+..-.   +.+...++.+..++|.||+.. .+|||+...+++||++|++.+.+-   +            
T Consensus        21 p~~~~~~G~~~~~l~---~~~~~~~~~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~---~------------   82 (163)
T 3i7d_A           21 RLNAAMDGRSSLRLG---DAGGLSQFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD---Q------------   82 (163)
T ss_dssp             GGGGGGTTEEEEEHH---HHTTCCSEEEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET---T------------
T ss_pred             CccccCCCeEEEEcc---cCCCCCeEEEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC---C------------
Confidence            444455676554432   222333688999999999965 799998888999999999998752   1            


Q ss_pred             CccccCCccceEEeeeeCCCcEEEECCC--CeEEEEecCCCCEEEEEEEecC
Q 040805          428 STREEGSATYHKVSSRIRTDSAYIVPAG--HPVVTVASQNNNLEVVCFEINA  477 (540)
Q Consensus       428 ~~~~~~~~~~~~~~~~l~~GDV~vVPaG--~~h~~~n~~~e~l~~v~F~~~a  477 (540)
                                +.  ..|++||+++||+|  .+|.+.|.+++++.++++.+..
T Consensus        83 ----------~~--~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l~v~~p~  122 (163)
T 3i7d_A           83 ----------GE--HPMVPGDCAAFPAGDPNGHQFVNRTDAPATFLVVGTRT  122 (163)
T ss_dssp             ----------EE--EEECTTCEEEECTTCCCCBEEECCSSSCEEEEEEEECC
T ss_pred             ----------EE--EEeCCCCEEEECCCCCcceEEEECCCCCEEEEEEECCC
Confidence                      22  47999999999999  9999999888899988875554

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=98.61  E-value=1.7e-07  Score=82.14  Aligned_cols=80  Identities=15%  Similarity=0.272  Sum_probs=64.0

Q ss_pred             cccceEEEEEEcCCCccc-ccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcE
Q 040805          371 DLDITVSYANISKGAMAA-PFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSA  449 (540)
Q Consensus       371 ~l~isv~~~~L~pggm~~-PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV  449 (540)
                      ..++.+..+.+.||+... ||||+....+.||++|++.+.+-   +                      +.  ..|++||+
T Consensus        23 ~~~~~~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~---~----------------------~~--~~l~~Gd~   75 (125)
T 3cew_A           23 LTGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITID---G----------------------EK--IELQAGDW   75 (125)
T ss_dssp             CSSCEEEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEET---T----------------------EE--EEEETTEE
T ss_pred             CCCcEEEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEEC---C----------------------EE--EEeCCCCE
Confidence            446888899999999987 89996554566699999998751   2                      23  37999999


Q ss_pred             EEECCCCeEEEEecCCCCEEEEEEEecC
Q 040805          450 YIVPAGHPVVTVASQNNNLEVVCFEINA  477 (540)
Q Consensus       450 ~vVPaG~~h~~~n~~~e~l~~v~F~~~a  477 (540)
                      ++||+|.+|.+.|.+++++.++++....
T Consensus        76 i~i~~~~~H~~~~~~~~~~~~~~i~~~~  103 (125)
T 3cew_A           76 LRIAPDGKRQISAASDSPIGFLCIQVKA  103 (125)
T ss_dssp             EEECTTCCEEEEEBTTBCEEEEEEEEET
T ss_pred             EEECCCCcEEEEcCCCCCEEEEEEEcCC
Confidence            9999999999999877888887764443

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=98.61  E-value=2.6e-07  Score=85.41  Aligned_cols=78  Identities=14%  Similarity=0.172  Sum_probs=66.4

Q ss_pred             ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      .++.+..+.|.||+...+|||+ ..+++||++|++.+.+   ++                      +.  ..|++||+++
T Consensus        42 ~~~~~~~~~l~pG~~~~~H~H~-~~E~~~Vl~G~~~v~v---~g----------------------~~--~~l~~Gd~i~   93 (156)
T 3kgz_A           42 LACEWRYFEVDEGGYSTLERHA-HVHAVMIHRGHGQCLV---GE----------------------TI--SDVAQGDLVF   93 (156)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCS-SCEEEEEEEEEEEEEE---TT----------------------EE--EEEETTCEEE
T ss_pred             CcEEEEEEEECCCCccCceeCC-CcEEEEEEeCEEEEEE---CC----------------------EE--EEeCCCCEEE
Confidence            4688999999999999999997 4689999999999985   22                      22  3799999999


Q ss_pred             ECCCCeEEEEecCCCCEEEEEEEecC
Q 040805          452 VPAGHPVVTVASQNNNLEVVCFEINA  477 (540)
Q Consensus       452 VPaG~~h~~~n~~~e~l~~v~F~~~a  477 (540)
                      ||+|.+|.+.|.+++++.++++....
T Consensus        94 ip~~~~H~~~n~g~~~~~~l~i~~~~  119 (156)
T 3kgz_A           94 IPPMTWHQFRANRGDCLGFLCVVNAA  119 (156)
T ss_dssp             ECTTCCEEEECCSSSCEEEEEEEESS
T ss_pred             ECCCCcEEeEeCCCCCEEEEEEEeCC
Confidence            99999999999889999998875443

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=98.60  E-value=2.2e-07  Score=86.84  Aligned_cols=77  Identities=13%  Similarity=0.144  Sum_probs=66.0

Q ss_pred             ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      .++.+..++|.||+...+|||+. .+++||++|++.+.+   ++                      +.  ..|.+||+++
T Consensus        51 ~~~~~~~~~l~pG~~~~~H~H~~-~E~~~Vl~G~~~~~v---~g----------------------~~--~~l~~GD~i~  102 (166)
T 3jzv_A           51 LTGELRYFEVGPGGHSTLERHQH-AHGVMILKGRGHAMV---GR----------------------AV--SAVAPYDLVT  102 (166)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCSS-CEEEEEEEECEEEEE---TT----------------------EE--EEECTTCEEE
T ss_pred             CeEEEEEEEECCCCccCceeCCC-cEEEEEEeCEEEEEE---CC----------------------EE--EEeCCCCEEE
Confidence            46889999999999999999975 699999999999875   22                      22  4799999999


Q ss_pred             ECCCCeEEEEecCCCCEEEEEEEec
Q 040805          452 VPAGHPVVTVASQNNNLEVVCFEIN  476 (540)
Q Consensus       452 VPaG~~h~~~n~~~e~l~~v~F~~~  476 (540)
                      ||+|.+|.+.|.+++++.++++...
T Consensus       103 ip~g~~H~~~n~~~~~~~~l~i~~~  127 (166)
T 3jzv_A          103 IPGWSWHQFRAPADEALGFLCMVNA  127 (166)
T ss_dssp             ECTTCCEEEECCTTSCEEEEEEEES
T ss_pred             ECCCCcEEeEeCCCCCEEEEEEEcc
Confidence            9999999999988999999887544

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=98.59  E-value=2.7e-07  Score=82.35  Aligned_cols=79  Identities=11%  Similarity=0.181  Sum_probs=64.9

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      ++.+..+.+.||+...+|||+ ..+++||++|++.+.+...+                       +.  ..|++||+++|
T Consensus        38 ~~~~~~~~~~pg~~~~~H~H~-~~e~~~vl~G~~~~~~~~~~-----------------------~~--~~l~~Gd~~~i   91 (145)
T 3ht1_A           38 RFVLTEFEVSPNGSTPPHFHE-WEHEIYVLEGSMGLVLPDQG-----------------------RT--EEVGPGEAIFI   91 (145)
T ss_dssp             SEEEEEEEEEEEEECCCEECS-SCEEEEEEEECEEEEEGGGT-----------------------EE--EEECTTCEEEE
T ss_pred             cEEEEEEEECCCCcCCCccCC-CceEEEEEEeEEEEEEeECC-----------------------EE--EEECCCCEEEE
Confidence            688999999999999999997 55778999999998742221                       22  37999999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEEEecC
Q 040805          453 PAGHPVVTVASQNNNLEVVCFEINA  477 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F~~~a  477 (540)
                      |+|.+|.+.|.+++++.++++...+
T Consensus        92 p~~~~H~~~~~~~~~~~~l~i~~~~  116 (145)
T 3ht1_A           92 PRGEPHGFVTGPGQTCRFLVVAPCE  116 (145)
T ss_dssp             CTTCCBEEECCTTCCEEEEEEEESC
T ss_pred             CCCCeEEeEcCCCCCEEEEEEECCC
Confidence            9999999999888888888765443

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=98.58  E-value=3e-07  Score=90.89  Aligned_cols=79  Identities=13%  Similarity=0.135  Sum_probs=66.3

Q ss_pred             ccceeeeeeeCCCccccc-cccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805          177 EKYRLGILIANPQTFVTP-THLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~P-h~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i  255 (540)
                      ..+-+.+++++||+.... ++|..++.+||++|++.+.+    +...+.|++||+++++++.+|++.|+| ++++++|.+
T Consensus       163 ~~~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~----~~~~~~l~~GD~~~~~~~~pH~~~n~g-~~~~~yl~~  237 (246)
T 1sfn_A          163 FDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL----EENYYPVTAGDIIWMGAHCPQWYGALG-RNWSKYLLY  237 (246)
T ss_dssp             CSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE----TTEEEEEETTCEEEECTTCCEEEEEES-SSCEEEEEE
T ss_pred             CCeEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE----CCEEEEcCCCCEEEECCCCCEEEEcCC-CCCEEEEEE
Confidence            355677789999998765 45678899999999999888    667899999999999999999999998 568988854


Q ss_pred             eecCCC
Q 040805          256 IKSINL  261 (540)
Q Consensus       256 ~~~~~~  261 (540)
                      - +.|.
T Consensus       238 k-d~~r  242 (246)
T 1sfn_A          238 K-DMNR  242 (246)
T ss_dssp             E-ECSS
T ss_pred             E-eccc
Confidence            4 5664

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=98.57  E-value=5.9e-07  Score=84.66  Aligned_cols=152  Identities=8%  Similarity=0.016  Sum_probs=94.0

Q ss_pred             ccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCCCCC-ceeEcCCCCCcccCCCce-E
Q 040805          281 RAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGESR-GTFNLFGKRPSHSNNFGE-L  358 (540)
Q Consensus       281 ~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~~~-~~fnL~~~~P~~~n~~G~-~  358 (540)
                      .+++..-||+..|++..++.++-.....     .+.+.+..|.....-...|=+..... ..     .........|. +
T Consensus        23 ~gltq~~lA~~~gis~~~is~~e~g~~~-----p~~~~l~~ia~~l~v~~~~l~~~~~~~~~-----~~~~~~~~~g~~~   92 (192)
T 1y9q_A           23 RGLSLDATAQLTGVSKAMLGQIERGESS-----PTIATLWKIASGLEASFSAFFANDPQLLS-----SERSFPDDLNMKI   92 (192)
T ss_dssp             TTCCHHHHHHHHSSCHHHHHHHHTTCSC-----CCHHHHHHHHHHHTCCSGGGGTTSTHHHH-----HCCBCTTCTTEEE
T ss_pred             cCCCHHHHHHHHCcCHHHHHHHHcCCCC-----CCHHHHHHHHHHHCcCHHHHcCCCCCCCc-----cceEEeCCCCEEE
Confidence            4788999999999999999999876532     12222222211000000011111111 00     11122234453 2


Q ss_pred             EEecCCCCCCCccccceEEEEEEcCCCcccccccC-CCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccc
Q 040805          359 FEADSNDFRPLEDLDITVSYANISKGAMAAPFYNS-RSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY  437 (540)
Q Consensus       359 ~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~-~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~  437 (540)
                      ..+.    |......+.+..+++.||+...++||. ...+++||++|++.+.+   ++                      
T Consensus        93 ~~l~----~~~~~~~~~~~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~---~~----------------------  143 (192)
T 1y9q_A           93 HTLF----PYAADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF---DE----------------------  143 (192)
T ss_dssp             EEEE----EEETTTTEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE---TT----------------------
T ss_pred             EEec----cCCCCCcEEEEEEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE---CC----------------------
Confidence            2332    222334688999999999998744432 45799999999999876   22                      


Q ss_pred             eEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEE
Q 040805          438 HKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFE  474 (540)
Q Consensus       438 ~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~  474 (540)
                      +.  ..|++||+++||+|.+|.+.|.+++++ ++++.
T Consensus       144 ~~--~~l~~GD~i~i~~~~~H~~~n~~~~~~-~l~v~  177 (192)
T 1y9q_A          144 QW--HELQQGEHIRFFSDQPHGYAAVTEKAV-FQNIV  177 (192)
T ss_dssp             EE--EEECTTCEEEEECSSSEEEEESSSCEE-EEEEE
T ss_pred             EE--EEeCCCCEEEEcCCCCeEeECCCCCcE-EEEEE
Confidence            23  379999999999999999999888888 76653

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=98.57  E-value=2e-07  Score=82.18  Aligned_cols=77  Identities=8%  Similarity=0.084  Sum_probs=65.2

Q ss_pred             ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      .++.+..+.+.||+...+|||+ ..+++||++|++.+.+   ++                      +.  ..|++||+++
T Consensus        46 ~~~~~~~~~~~pg~~~~~H~H~-~~e~~~Vl~G~~~~~i---~~----------------------~~--~~l~~Gd~i~   97 (126)
T 1vj2_A           46 PNFVMRLFTVEPGGLIDRHSHP-WEHEIFVLKGKLTVLK---EQ----------------------GE--ETVEEGFYIF   97 (126)
T ss_dssp             SSEEEEEEEEEEEEEEEEECCS-SCEEEEEEESEEEEEC---SS----------------------CE--EEEETTEEEE
T ss_pred             CCEEEEEEEECCCCcCCceeCC-CcEEEEEEEeEEEEEE---CC----------------------EE--EEECCCCEEE
Confidence            3688999999999999999997 7899999999999874   12                      22  3699999999


Q ss_pred             ECCCCeEEEEecCCCCEEEEEEEec
Q 040805          452 VPAGHPVVTVASQNNNLEVVCFEIN  476 (540)
Q Consensus       452 VPaG~~h~~~n~~~e~l~~v~F~~~  476 (540)
                      ||+|.+|.+.|.+++++.++++...
T Consensus        98 ip~g~~H~~~~~~~~~~~~l~v~~~  122 (126)
T 1vj2_A           98 VEPNEIHGFRNDTDSEVEFLCLIPK  122 (126)
T ss_dssp             ECTTCCEEEECCSSSCEEEEEEEEG
T ss_pred             ECCCCcEEeEeCCCCCEEEEEEEcc
Confidence            9999999999988888888876544

>2l37_A Ribosome-inactivating protein luffin P1; hydrolase; NMR {Luffa aegyptiaca}

Probab=98.57  E-value=6.9e-08  Score=69.87  Aligned_cols=42  Identities=21%  Similarity=0.612  Sum_probs=37.3

Q ss_pred             CCchHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHhhhccC
Q 040805           89 GEPAEKHLRQCQRECDRQEEGGQQRALCRFRCQEKYRREKEGE  131 (540)
Q Consensus        89 ~d~~~~~~~~c~~~c~~~~~~~~q~~~c~~rc~~~~~~~~~~~  131 (540)
                      .|| +++|.+|+++|+++..+..++..|+++|+++|+++++++
T Consensus         1 ~dP-~~el~~C~~~C~~q~q~~eq~q~C~qrCee~y~e~~~~~   42 (43)
T 2l37_A            1 GSP-RTEYEACRVRCQVAEHGVERQRRCQQVCEKRLREREGRR   42 (43)
T ss_dssp             CCC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHCSC
T ss_pred             CCH-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhccC
Confidence            378 999999999999988877899999999999999887543

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=98.56  E-value=5.2e-07  Score=91.98  Aligned_cols=71  Identities=14%  Similarity=0.203  Sum_probs=59.0

Q ss_pred             eeeeCCC-ccccccccC-CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecC
Q 040805          183 ILIANPQ-TFVTPTHLD-ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSI  259 (540)
Q Consensus       183 ~~~l~Pg-gl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~  259 (540)
                      ++.+.|+ ....+|||. ..+++||++|++++.+    +..++.|++||+++||+|++|++.|.+ + +++++.++.+.
T Consensus       221 ~~~~~p~g~~~~~h~H~~~~e~~~vl~G~~~~~i----~~~~~~l~~GD~~~ip~~~~H~~~n~~-~-~~~~l~v~~~~  293 (337)
T 1y3t_A          221 VSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT----DGQEIQLNPGDFLHVPANTVHSYRLDS-H-YTKMVGVLVPG  293 (337)
T ss_dssp             EEEEECSCCCCCCEECSSCEEEEEEEESCEEEEE----TTEEEEECTTCEEEECTTCCEEEEECS-S-SEEEEEEEESS
T ss_pred             EEEEcCCCCCCCCcCCCCCcEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCeEEEEECC-C-CeEEEEEEcCc
Confidence            3366674 556778886 7999999999999988    457899999999999999999999987 4 78888887544

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=98.56  E-value=3e-07  Score=83.71  Aligned_cols=96  Identities=10%  Similarity=0.115  Sum_probs=73.1

Q ss_pred             ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      .++.+..+.+.||+...+|||+. .+++||++|++.+.+=.                         +. ...|++||+++
T Consensus        46 ~~~~~~~~~~~pg~~~~~H~H~~-~E~~~Vl~G~~~~~~~~-------------------------~~-~~~l~~Gd~i~   98 (147)
T 2f4p_A           46 FNTQVYDVVFEPGARTHWHSHPG-GQILIVTRGKGFYQERG-------------------------KP-ARILKKGDVVE   98 (147)
T ss_dssp             SSCEEEEEEECTTCEECSEECTT-CEEEEEEEEEEEEEETT-------------------------SC-CEEEETTCEEE
T ss_pred             CcEEEEEEEECCCCccCceECCC-ceEEEEEeCEEEEEECC-------------------------EE-EEEECCCCEEE
Confidence            36889999999999999999976 89999999999987521                         11 13699999999


Q ss_pred             ECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCCHHHHH
Q 040805          452 VPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKE  501 (540)
Q Consensus       452 VPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla  501 (540)
                      ||+|.+|++.|.+++++.++++.......       ...++..+..+...
T Consensus        99 ip~~~~H~~~n~~~~~~~~l~v~~~~~~~-------~~~wl~~v~~e~~~  141 (147)
T 2f4p_A           99 IPPNVVHWHGAAPDEELVHIGISTQVHLG-------PAEWLGSVTEEEYR  141 (147)
T ss_dssp             ECTTCCEEEEEBTTBCEEEEEEECCGGGC-------CCEECCCCCHHHHH
T ss_pred             ECCCCcEEeEeCCCCCEEEEEEEccCCCC-------CceecccCCHHHhh
Confidence            99999999999888888888775443111       13455555555443

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=98.56  E-value=1.9e-07  Score=94.13  Aligned_cols=79  Identities=11%  Similarity=0.150  Sum_probs=67.9

Q ss_pred             ccceeeeeeeCCCccccc-cccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805          177 EKYRLGILIANPQTFVTP-THLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~P-h~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i  255 (540)
                      .++.+.+++++||+.... |+|..++.+||++|++.+.+    +...+.|++||++++++|.+|+++|+| +++|++|.+
T Consensus       189 ~~~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~----~~~~~~v~~GD~~~~~~~~~h~~~n~g-~~~~~yl~~  263 (278)
T 1sq4_A          189 HDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL----NQDWVEVEAGDFMWLRAFCPQACYSGG-PGRFRYLLY  263 (278)
T ss_dssp             CSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE----TTEEEEEETTCEEEEEESCCEEEECCS-SSCEEEEEE
T ss_pred             CCeEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCCEEEEcCC-CCCEEEEEE
Confidence            467788899999998764 45667899999999998887    567899999999999999999999998 579999977


Q ss_pred             eecCCC
Q 040805          256 IKSINL  261 (540)
Q Consensus       256 ~~~~~~  261 (540)
                      . +.|.
T Consensus       264 ~-d~nr  268 (278)
T 1sq4_A          264 K-DVNR  268 (278)
T ss_dssp             E-ECSS
T ss_pred             E-EcCC
Confidence            7 4664

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=98.55  E-value=2.5e-07  Score=90.30  Aligned_cols=72  Identities=19%  Similarity=0.289  Sum_probs=61.1

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe-CCCCccEEEEEEe
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN-TDDDEKLYIVKFI  256 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N-~g~~e~l~~v~i~  256 (540)
                      .+.+.++.+.||+...+|+|..++++||++|++.+.+    +...+.|++||.++||+|++|++.| .+   ++.++.++
T Consensus       152 ~~~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i----~g~~~~l~~Gd~i~ip~~~~H~~~~~~~---~~~~ll~~  224 (227)
T 3rns_A          152 NLVMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV----DGKPFIVKKGESAVLPANIPHAVEAETE---NFKMLLIL  224 (227)
T ss_dssp             TEEEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE----TTEEEEEETTEEEEECTTSCEEEECCSS---CEEEEEEE
T ss_pred             CeEEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE----CCEEEEECCCCEEEECCCCcEEEEeCCC---CEEEEEEE
Confidence            4567778999999988898988999999999999987    4568999999999999999999999 54   46555443

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=98.54  E-value=4.1e-07  Score=79.15  Aligned_cols=71  Identities=15%  Similarity=0.135  Sum_probs=59.1

Q ss_pred             ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      -++.+.++.+.||+...+|||+. .+++||++|++.+.+   ++                      +.  ..|++||+++
T Consensus        34 ~~~~v~~~~l~~G~~~~~H~H~~-~e~~~Vl~G~~~~~i---~~----------------------~~--~~l~~Gd~i~   85 (114)
T 3fjs_A           34 HRLEVMRMVLPAGKQVGSHSVAG-PSTIQCLEGEVEIGV---DG----------------------AQ--RRLHQGDLLY   85 (114)
T ss_dssp             TTEEEEEEEECTTCEEEEECCSS-CEEEEEEESCEEEEE---TT----------------------EE--EEECTTEEEE
T ss_pred             CCEEEEEEEECCCCccCceeCCC-cEEEEEEECEEEEEE---CC----------------------EE--EEECCCCEEE
Confidence            36889999999999999999975 699999999999875   12                      22  4799999999


Q ss_pred             ECCCCeEEEEecCCCCEEE
Q 040805          452 VPAGHPVVTVASQNNNLEV  470 (540)
Q Consensus       452 VPaG~~h~~~n~~~e~l~~  470 (540)
                      ||+|.+|.+.|.++..+.+
T Consensus        86 ip~~~~H~~~~~~~~~~~~  104 (114)
T 3fjs_A           86 LGAGAAHDVNAITNTSLLV  104 (114)
T ss_dssp             ECTTCCEEEEESSSEEEEE
T ss_pred             ECCCCcEEEEeCCCcEEEE
Confidence            9999999999986544443

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=98.53  E-value=5.9e-07  Score=77.21  Aligned_cols=72  Identities=14%  Similarity=0.114  Sum_probs=60.2

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      ++.+..+.+.||+...+|||+ ..+++||++|++.+.+   ++                      +.  ..|.+||+++|
T Consensus        33 ~~~~~~~~~~pg~~~~~H~H~-~~e~~~vl~G~~~~~~---~~----------------------~~--~~l~~Gd~~~i   84 (116)
T 2pfw_A           33 ELMAVKIWFDKGAEGYVHAHR-HSQVSYVVEGEFHVNV---DG----------------------VI--KVLTAGDSFFV   84 (116)
T ss_dssp             TEEEEEEEECTTEEEEEECCS-SEEEEEEEEECEEEEE---TT----------------------EE--EEECTTCEEEE
T ss_pred             ceEEEEEEECCCCcCCcEECC-cceEEEEEeeEEEEEE---CC----------------------EE--EEeCCCCEEEE
Confidence            478899999999999999997 7899999999999886   22                      22  36999999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEEE
Q 040805          453 PAGHPVVTVASQNNNLEVVCFE  474 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F~  474 (540)
                      |+|.+|.+.|.+  +..++.+.
T Consensus        85 p~~~~H~~~~~~--~~~~l~v~  104 (116)
T 2pfw_A           85 PPHVDHGAVCPT--GGILIDTF  104 (116)
T ss_dssp             CTTCCEEEEESS--CEEEEEEE
T ss_pred             CcCCceeeEeCC--CcEEEEEE
Confidence            999999998875  55655543

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=98.50  E-value=3.1e-07  Score=76.81  Aligned_cols=66  Identities=15%  Similarity=0.217  Sum_probs=51.1

Q ss_pred             eeeeeeeCCCccccccccCC-CeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEE
Q 040805          180 RLGILIANPQTFVTPTHLDA-DAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK  254 (540)
Q Consensus       180 rl~~~~l~Pggl~~Ph~~~A-~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~  254 (540)
                      .+.+..+.  +...+|+|+. .+++||++|++.+.+    +..++.|++||+++||+|.+|.+.|.+   +..++.
T Consensus        32 ~~~~~~~~--~~~~~H~H~~~~e~~~v~~G~~~~~~----~~~~~~l~~Gd~~~ip~~~~H~~~~~~---~~~~l~   98 (102)
T 3d82_A           32 QFKLVKVE--GEFVWHEHADTDEVFIVMEGTLQIAF----RDQNITLQAGEMYVIPKGVEHKPMAKE---ECKIMI   98 (102)
T ss_dssp             EEEEEEEE--EECCCBCCTTCCEEEEEEESEEEEEC----SSCEEEEETTEEEEECTTCCBEEEEEE---EEEEEE
T ss_pred             EEEEEEEC--CCCCceeCCCCcEEEEEEeCEEEEEE----CCEEEEEcCCCEEEECCCCeEeeEcCC---CCEEEE
Confidence            34344443  4467888876 999999999998876    346789999999999999999999974   455543

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=98.50  E-value=1.5e-07  Score=80.29  Aligned_cols=65  Identities=15%  Similarity=0.219  Sum_probs=50.9

Q ss_pred             eeeCCCccccccccCC-CeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805          184 LIANPQTFVTPTHLDA-DAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       184 ~~l~Pggl~~Ph~~~A-~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i  255 (540)
                      +.+.||.. .+|+|.. .+++||++|++.+.+   ++..++.|++||+++||+|++|.+.|.+   ++.++.+
T Consensus        33 ~~~~~g~~-~~H~H~~~~E~~~Vl~G~~~~~~---~~~~~~~l~~Gd~~~ip~~~~H~~~~~~---~~~~l~i   98 (107)
T 2i45_A           33 LVKLLGDY-GWHTHGYSDKVLFAVEGDMAVDF---ADGGSMTIREGEMAVVPKSVSHRPRSEN---GCSLVLI   98 (107)
T ss_dssp             EEEEEEEC-CCBCC--CCEEEEESSSCEEEEE---TTSCEEEECTTEEEEECTTCCEEEEEEE---EEEEEEE
T ss_pred             EEECCCCC-cceeCCCCCEEEEEEeCEEEEEE---CCCcEEEECCCCEEEECCCCcEeeEeCC---CeEEEEE
Confidence            46678874 5788876 999999999998887   2226899999999999999999999953   4666543

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=98.50  E-value=5.5e-07  Score=85.99  Aligned_cols=77  Identities=16%  Similarity=0.269  Sum_probs=59.8

Q ss_pred             eeeeeeeCCCc----------cccccccCCCeEEEEEeeEEEEEEEecC-CceEEeeCCCcEEEECCCCeEEEEeCCCCc
Q 040805          180 RLGILIANPQT----------FVTPTHLDADAVFFVSWGQGTITVIREN-NRESYNVKRGDIIRVPSGNTFYVTNTDDDE  248 (540)
Q Consensus       180 rl~~~~l~Pgg----------l~~Ph~~~A~ei~yV~~G~g~ig~V~~~-~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e  248 (540)
                      ...++.+.|+.          ++.+|+|+.+||+||++|+|.+.+-..+ ......|++||+|+||+|+.||+.+.. +.
T Consensus        75 ~~D~v~~~p~~~p~~~~k~~~~~~~H~H~~~Ei~yVleG~G~f~i~d~~d~~~~i~v~~GDlIiIPaG~~H~f~~~~-~~  153 (191)
T 1vr3_A           75 WMDIITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDE-KN  153 (191)
T ss_dssp             EEEEEEESTTTSTTHHHHHHHHHSCEECSSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECT-TC
T ss_pred             ceeEEEECCCcCcchhhhhccCCcceECCcceEEEEEeceEEEEECCCCCeEEEEEECCCCEEEECcCCcCCcccCC-CC
Confidence            34556667764          3466778889999999999999985542 233579999999999999999999865 45


Q ss_pred             cEEEEEEee
Q 040805          249 KLYIVKFIK  257 (540)
Q Consensus       249 ~l~~v~i~~  257 (540)
                      .+..+.+|.
T Consensus       154 ~~~airlF~  162 (191)
T 1vr3_A          154 YVKAMRLFV  162 (191)
T ss_dssp             CEEEEEEES
T ss_pred             CEEEEEEEC
Confidence            788888884

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=98.49  E-value=6.4e-07  Score=79.02  Aligned_cols=71  Identities=14%  Similarity=0.155  Sum_probs=57.5

Q ss_pred             ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      ..+++.++++.||+-.  +||....|+.||++|++.+.+   ++                      +.  ..|++||+++
T Consensus        38 ~~~~~~~~~~~pG~~~--~~H~~~~E~~~Vl~G~~~~~~---~g----------------------~~--~~l~~GD~v~   88 (119)
T 3lwc_A           38 GPITIGYGRYAPGQSL--TETMAVDDVMIVLEGRLSVST---DG----------------------ET--VTAGPGEIVY   88 (119)
T ss_dssp             CCCEEEEEEECTTCEE--EEECSSEEEEEEEEEEEEEEE---TT----------------------EE--EEECTTCEEE
T ss_pred             CCEEEEEEEECCCCCc--CccCCCCEEEEEEeCEEEEEE---CC----------------------EE--EEECCCCEEE
Confidence            3688999999999854  677789999999999999987   23                      23  3699999999


Q ss_pred             ECCCCeEEEEecCCCCEEEEE
Q 040805          452 VPAGHPVVTVASQNNNLEVVC  472 (540)
Q Consensus       452 VPaG~~h~~~n~~~e~l~~v~  472 (540)
                      ||+|.+|++.|.+ +...++.
T Consensus        89 ip~g~~H~~~~~~-~~~~~l~  108 (119)
T 3lwc_A           89 MPKGETVTIRSHE-EGALTAY  108 (119)
T ss_dssp             ECTTCEEEEEEEE-EEEEEEE
T ss_pred             ECCCCEEEEEcCC-CCeEEEE
Confidence            9999999988764 4555544

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=98.49  E-value=4.2e-07  Score=88.05  Aligned_cols=95  Identities=11%  Similarity=0.112  Sum_probs=74.8

Q ss_pred             eeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEE
Q 040805          152 RVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDII  231 (540)
Q Consensus       152 ~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~  231 (540)
                      -|...+|...++   ..+.+.-  -..++++++.+.||+..+.|.|.++|++||++|.+.+.+   ++...+.+++||++
T Consensus       110 ~f~~~~a~~elv---GP~g~~~--s~~l~lG~v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v---~~g~~~~l~pGd~v  181 (217)
T 4b29_A          110 DFLNRFGWFELA---GPSGHFL--TQSLRVTVGYWGPGLDYGWHEHLPEELYSVVSGRALFHL---RNAPDLMLEPGQTR  181 (217)
T ss_dssp             HHHHHEEEEEEE---ETTSSEE--CSSCEEEEEEECSSCEEEEEECSSEEEEEEEEECEEEEE---TTSCCEEECTTCEE
T ss_pred             hHHhCceEEEEE---CCCCCCC--CCeEEEEEEEECCCCcCCCCCCCCceEEEEEeCCEEEEE---CCCCEEecCCCCEE
Confidence            456677888887   3332222  356788899999999977777889999999999998887   44678899999999


Q ss_pred             EECCCCeEEEEeCCCCccEEEEEEe
Q 040805          232 RVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       232 ~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      ++|+|++|++.+ + +++|.++.+.
T Consensus       182 ~ipsgv~Ha~rt-~-dePllalwvW  204 (217)
T 4b29_A          182 FHPANAPHAMTT-L-TDPILTLVLW  204 (217)
T ss_dssp             EECTTCCEEEEC-C-SSCEEEEEEE
T ss_pred             EcCCCCceeEEE-C-CccEEEEEEE
Confidence            999999999985 4 4788665554

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=98.48  E-value=2.7e-07  Score=79.25  Aligned_cols=61  Identities=16%  Similarity=0.316  Sum_probs=51.0

Q ss_pred             eeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          180 RLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       180 rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      .++++.+.||..  |.|++..|++||++|++.+.+   ++..++.|++||+++||+|++|.+.|.+
T Consensus        32 ~~~~~~~~pg~~--~~hH~~~E~~~Vl~G~~~~~i---~~g~~~~l~~GD~i~ip~g~~H~~~n~~   92 (101)
T 1o5u_A           32 KWPIWEKEVSEF--DWYYDTNETCYILEGKVEVTT---EDGKKYVIEKGDLVTFPKGLRCRWKVLE   92 (101)
T ss_dssp             GSCEEEECSEEE--EEECSSCEEEEEEEEEEEEEE---TTCCEEEEETTCEEEECTTCEEEEEEEE
T ss_pred             EEEEEEeCCCcc--cccCCceEEEEEEeCEEEEEE---CCCCEEEECCCCEEEECCCCcEEEEeCC
Confidence            355678899875  334678999999999999887   2256899999999999999999999976

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=98.48  E-value=7.6e-07  Score=76.41  Aligned_cols=74  Identities=16%  Similarity=0.322  Sum_probs=60.4

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      ++.+..+.+.||+-..+|||+ ..+++||++|++.+.+   ++                      +.  ..|.+||+++|
T Consensus        39 ~~~~~~~~~~~g~~~~~H~H~-~~e~~~vl~G~~~~~~---~~----------------------~~--~~l~~Gd~~~i   90 (115)
T 1yhf_A           39 DLGITVFSLDKGQEIGRHSSP-GDAMVTILSGLAEITI---DQ----------------------ET--YRVAEGQTIVM   90 (115)
T ss_dssp             TEEEEEEEECTTCEEEEECCS-SEEEEEEEESEEEEEE---TT----------------------EE--EEEETTCEEEE
T ss_pred             ceEEEEEEECCCCccCCEECC-CcEEEEEEeCEEEEEE---CC----------------------EE--EEECCCCEEEE
Confidence            578889999999999999997 6899999999999875   22                      22  37999999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEEEec
Q 040805          453 PAGHPVVTVASQNNNLEVVCFEIN  476 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F~~~  476 (540)
                      |+|.+|.+.|.+  ++.++++.+.
T Consensus        91 p~~~~H~~~~~~--~~~~~~v~~~  112 (115)
T 1yhf_A           91 PAGIPHALYAVE--AFQMLLVVVK  112 (115)
T ss_dssp             CTTSCEEEEESS--CEEEEEEEEC
T ss_pred             CCCCCEEEEECC--CceEEEEEEc
Confidence            999999998875  4666554333

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=98.48  E-value=1.4e-06  Score=73.72  Aligned_cols=73  Identities=12%  Similarity=0.134  Sum_probs=58.3

Q ss_pred             ccceEEEEEEcCCCcccccccCCCcEE-EEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEE
Q 040805          372 LDITVSYANISKGAMAAPFYNSRSTKV-AVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAY  450 (540)
Q Consensus       372 l~isv~~~~L~pggm~~PH~h~~A~ei-~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~  450 (540)
                      -++.+..+.+.||+...+|||+...++ +||++|++.+.+-.  +                      +.  ..|.+||++
T Consensus        31 ~~~~~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~--~----------------------~~--~~l~~Gd~~   84 (110)
T 2q30_A           31 ENFKIVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDG--D----------------------AV--IPAPRGAVL   84 (110)
T ss_dssp             SSCEEEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGG--G----------------------CE--EEECTTEEE
T ss_pred             CCEEEEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCC--C----------------------EE--EEECCCCEE
Confidence            367888999999999999999866787 89999999987411  1                      12  369999999


Q ss_pred             EECCCCeEEEEecCCCCEEEEE
Q 040805          451 IVPAGHPVVTVASQNNNLEVVC  472 (540)
Q Consensus       451 vVPaG~~h~~~n~~~e~l~~v~  472 (540)
                      +||+|.+|.+.|.++  ..++.
T Consensus        85 ~ip~~~~H~~~~~~~--~~~l~  104 (110)
T 2q30_A           85 VAPISTPHGVRAVTD--MKVLV  104 (110)
T ss_dssp             EEETTSCEEEEESSS--EEEEE
T ss_pred             EeCCCCcEEEEEcCC--cEEEE
Confidence            999999999988754  44443

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=98.45  E-value=6.3e-07  Score=79.35  Aligned_cols=72  Identities=17%  Similarity=0.090  Sum_probs=52.5

Q ss_pred             eEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC
Q 040805          375 TVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA  454 (540)
Q Consensus       375 sv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa  454 (540)
                      .+..+.+.||+...+|||+...+++||++|++.+.+-.  +                      +.  ..|++||+++||+
T Consensus        44 ~~~~~~~~~g~~~~~H~H~~~~E~~~vl~G~~~~~~~~--~----------------------~~--~~l~~Gd~~~ip~   97 (134)
T 2o8q_A           44 HVIRAIPGKEAKPTWHTHTVGFQLFYVLRGWVEFEYED--I----------------------GA--VMLEAGGSAFQPP   97 (134)
T ss_dssp             EEEEECC-----CCCEEECCSCEEEEEEESEEEEEETT--T----------------------EE--EEEETTCEEECCT
T ss_pred             EEEEEecCCCCCCCCEECCCCcEEEEEEeCEEEEEECC--c----------------------EE--EEecCCCEEEECC
Confidence            34455555899999999988899999999999987632  1                      12  3699999999999


Q ss_pred             CCeEEEEecCCCCEEEEEE
Q 040805          455 GHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       455 G~~h~~~n~~~e~l~~v~F  473 (540)
                      |.+|.+.|.++ ++.++++
T Consensus        98 g~~H~~~~~~~-~~~~l~~  115 (134)
T 2o8q_A           98 GVRHRELRHSD-DLEVLEI  115 (134)
T ss_dssp             TCCEEEEEECT-TCEEEEE
T ss_pred             CCcEEeEeCCC-CeEEEEE
Confidence            99999998655 4576654

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=98.38  E-value=1.9e-07  Score=88.44  Aligned_cols=65  Identities=14%  Similarity=0.242  Sum_probs=52.1

Q ss_pred             ccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          192 VTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       192 ~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      +.+|+|+.+|++||++|+|.+.+...+......+++||+|+||+|+.||+.+.. +..+..+.+|.
T Consensus        93 ~~~H~H~~~Ei~~Vl~G~g~~~i~~~d~~~~~~l~~GDli~IP~g~~H~~~~~~-~~~~~~ir~F~  157 (179)
T 1zrr_A           93 LNEHTHGEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGS-EPNFTAIRIFD  157 (179)
T ss_dssp             HSCBEESSCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSS-CSSCEEEEEEC
T ss_pred             ccceECChheEEEEEcceEEEEEEeCCEEEEEEECCCCEEEECCCCeEeeecCC-CceEEEEEecc
Confidence            567888889999999999998876223334567999999999999999998865 34677777774

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=98.33  E-value=4.4e-06  Score=79.73  Aligned_cols=80  Identities=11%  Similarity=0.196  Sum_probs=62.3

Q ss_pred             eEEEEEEcCCC----------cccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeee
Q 040805          375 TVSYANISKGA----------MAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRI  444 (540)
Q Consensus       375 sv~~~~L~pgg----------m~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  444 (540)
                      +...+.+.|+.          .+.+|+|+. .+|.||++|+|.+.|-..++                      +.+...|
T Consensus        75 ~~D~v~~~p~~~p~~~~k~~~~~~~H~H~~-~Ei~yVleG~G~f~i~d~~d----------------------~~~~i~v  131 (191)
T 1vr3_A           75 WMDIITICKDTLPNYEEKIKMFFEEHLHLD-EEIRYILEGSGYFDVRDKED----------------------KWIRISM  131 (191)
T ss_dssp             EEEEEEESTTTSTTHHHHHHHHHSCEECSS-CEEEEEEEEEEEEEEECTTS----------------------CEEEEEE
T ss_pred             ceeEEEECCCcCcchhhhhccCCcceECCc-ceEEEEEeceEEEEECCCCC----------------------eEEEEEE
Confidence            55667777775          347899986 79999999999999887533                      2344579


Q ss_pred             CCCcEEEECCCCeEEEEecCCCCEEEEEEEecC
Q 040805          445 RTDSAYIVPAGHPVVTVASQNNNLEVVCFEINA  477 (540)
Q Consensus       445 ~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a  477 (540)
                      ++||+++||+|.+|+..++.+..+..+.|+++.
T Consensus       132 ~~GDlIiIPaG~~H~f~~~~~~~~~airlF~~~  164 (191)
T 1vr3_A          132 EKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGE  164 (191)
T ss_dssp             ETTEEEEECTTCCEEEEECTTCCEEEEEEESSS
T ss_pred             CCCCEEEECcCCcCCcccCCCCCEEEEEEECCC
Confidence            999999999999999988766667777665554

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=98.31  E-value=2.2e-05  Score=78.50  Aligned_cols=54  Identities=13%  Similarity=0.239  Sum_probs=46.9

Q ss_pred             ccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          192 VTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       192 ~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      +-=||.+.+|++|+++|..++-+++.+......|++||+|++|+|++|.=.-..
T Consensus        44 ~d~H~~~~dE~FyqlkG~m~l~~~d~g~~~~V~i~eGemfllP~gv~HsP~r~~   97 (286)
T 2qnk_A           44 KDYHIEEGEEVFYQLEGDMVLRVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFA   97 (286)
T ss_dssp             CCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTEEEEECTTCCEEEEECT
T ss_pred             ccCcCCCCCeEEEEEeCeEEEEEEeCCceeeEEECCCeEEEeCCCCCcCCcccC
Confidence            444555789999999999999999876667889999999999999999998854

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=98.31  E-value=5.6e-06  Score=76.60  Aligned_cols=100  Identities=16%  Similarity=0.140  Sum_probs=71.6

Q ss_pred             ceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEe--ceEEEEEEcCCCCC
Q 040805          340 GTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVA--GDGYIEIACPHVSR  417 (540)
Q Consensus       340 ~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~--G~g~v~vv~p~~~~  417 (540)
                      ...+|.+-+| .....|..+.+-..+-    ...+++..+.+  ++-..+|||+...|+.||++  |++.+.+   ++  
T Consensus        18 ~iv~~~ei~~-~~~~~G~srR~l~~~~----~fp~sv~~v~~--g~~~~~H~H~~~~E~~yVLe~~G~g~v~i---dg--   85 (157)
T 4h7l_A           18 QMISLSEIEA-VACPCGWAQRAFGHDA----GTSVSVHYTQI--TKAARTHYHREHQEIYVVLDHAAHATIEL---NG--   85 (157)
T ss_dssp             EEEETTTSCC-EEETTEEEEEESCGGG----CCSCEEEEEEE--CSCCCCBBCSSCEEEEEEEEECTTCEEEE---TT--
T ss_pred             eEEEhhhCCC-ccCCCCeeeEEeEcCC----CCcEEEEEEeC--CCCccceECCCCcEEEEEEecCcEEEEEE---CC--
Confidence            3566766665 5677886655443211    12244555554  55568999999999999999  9999986   22  


Q ss_pred             CcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecC
Q 040805          418 SSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINA  477 (540)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a  477 (540)
                                          +.  ..|++||+++||+|..|.+.+    ++.++++.+.+
T Consensus        86 --------------------e~--~~l~~GD~v~IPpg~~H~i~g----~l~~L~I~~Pp  119 (157)
T 4h7l_A           86 --------------------QS--YPLTKLLAISIPPLVRHRIVG----EATIINIVSPP  119 (157)
T ss_dssp             --------------------EE--EECCTTEEEEECTTCCEEEES----CEEEEEEEESS
T ss_pred             --------------------EE--EEeCCCCEEEECCCCeEeeEC----CEEEEEEECCC
Confidence                                23  379999999999999999872    68888876554

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=98.29  E-value=6.6e-07  Score=79.55  Aligned_cols=64  Identities=17%  Similarity=0.155  Sum_probs=52.6

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      .+.++++.+.||.... |++..+|++||++|++.+.+   .+...+.|++||+++||+|++|.+.|.+
T Consensus        48 ~~~~g~w~~~pG~~~~-~~~~~~E~~~Vl~G~~~l~~---~~g~~~~l~~GD~~~ip~g~~h~~~~~~  111 (123)
T 3bcw_A           48 KVESGVWESTSGSFQS-NTTGYIEYCHIIEGEARLVD---PDGTVHAVKAGDAFIMPEGYTGRWEVDR  111 (123)
T ss_dssp             TEEEEEEEEEEEEEEC-CCTTEEEEEEEEEEEEEEEC---TTCCEEEEETTCEEEECTTCCCEEEEEE
T ss_pred             CEEEEEEEECCCceee-EcCCCcEEEEEEEEEEEEEE---CCCeEEEECCCCEEEECCCCeEEEEECC
Confidence            4678888999998754 33333899999999998775   3456789999999999999999999986

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=98.28  E-value=3.3e-06  Score=78.94  Aligned_cols=74  Identities=11%  Similarity=0.055  Sum_probs=62.9

Q ss_pred             cceEEEEEEcC-CCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          373 DITVSYANISK-GAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       373 ~isv~~~~L~p-ggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      -+.+..++|.| |+...|+.+..+.+++||++|+..++|-   +                      +.  ..|.+||.++
T Consensus        87 ~~~~~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl~---g----------------------~~--~~L~~Gds~~  139 (166)
T 2vpv_A           87 YFASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVC---K----------------------NK--FLSVKGSTFQ  139 (166)
T ss_dssp             SCEEEEEEECSSGGGCEEEECCSEEEEEEEEESEEEEEET---T----------------------EE--EEEETTCEEE
T ss_pred             cceeEEEEECCCCCCCCCccCCCceEEEEEEEeEEEEEEC---C----------------------EE--EEEcCCCEEE
Confidence            36677899999 8888999888999999999999999872   2                      23  3799999999


Q ss_pred             ECCCCeEEEEecCCCCEEEEEE
Q 040805          452 VPAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       452 VPaG~~h~~~n~~~e~l~~v~F  473 (540)
                      ||+|.+|.+.|.++.++.++..
T Consensus       140 iP~g~~H~~~N~~d~~Arll~V  161 (166)
T 2vpv_A          140 IPAFNEYAIANRGNDEAKMFFV  161 (166)
T ss_dssp             ECTTCEEEEEECSSSCEEEEEE
T ss_pred             ECCCCCEEEEECCCCCEEEEEE
Confidence            9999999999998888776653

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=98.27  E-value=4.2e-05  Score=74.70  Aligned_cols=158  Identities=16%  Similarity=0.133  Sum_probs=105.7

Q ss_pred             eeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecC
Q 040805          180 RLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSI  259 (540)
Q Consensus       180 rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~  259 (540)
                      .+.++.+.||+.+++|.|...+.+||++|...    +.    ...+.+||.+++|+|+.|.... .  +.+.++..+  .
T Consensus        44 ~~~lvr~~pG~~~p~H~H~g~Ee~~VL~G~f~----d~----~~~~~~Gd~~~~P~g~~H~p~a-~--~gc~~~vk~--~  110 (223)
T 3o14_A           44 ATSIVRYAPGSRFSAHTHDGGEEFIVLDGVFQ----DE----HGDYPAGTYVRNPPTTSHVPGS-A--EGCTIFVKL--W  110 (223)
T ss_dssp             EEEEEEECTTEECCCEECTTCEEEEEEEEEEE----ET----TEEEETTEEEEECTTCEECCEE-S--SCEEEEEEE--S
T ss_pred             EEEEEEECCCCCcccccCCCCEEEEEEEeEEE----EC----CeEECCCeEEEeCCCCccccEe-C--CCCEEEEEe--c
Confidence            46677999999999998999999999999853    22    3579999999999999998876 3  235444322  1


Q ss_pred             CCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCCCCC
Q 040805          260 NLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGESR  339 (540)
Q Consensus       260 ~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~~~  339 (540)
                      +.+                                 .         .+...+ ..+.             ..|...    
T Consensus       111 ~~~---------------------------------~---------~d~~~v-~~~~-------------~~W~~~----  130 (223)
T 3o14_A          111 QFD---------------------------------P---------ADRTQF-SKNM-------------EAELGA----  130 (223)
T ss_dssp             CSC---------------------------------T---------TCCBCE-EEET-------------TTTCCC----
T ss_pred             CCC---------------------------------C---------Cccccc-ccch-------------hccccc----
Confidence            111                                 0         000011 1100             002110    


Q ss_pred             ceeEcCCCCCcccCCCc-eEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCC
Q 040805          340 GTFNLFGKRPSHSNNFG-ELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRS  418 (540)
Q Consensus       340 ~~fnL~~~~P~~~n~~G-~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~  418 (540)
                                   ...| .+..+....       +-.+.++.+.||+.+.+|.| ...|| +|++|+...    .+    
T Consensus       131 -------------~~~Gv~~~~L~~~~-------~E~v~l~r~~~G~~~~~~~h-gG~Ei-lVL~G~~~d----~~----  180 (223)
T 3o14_A          131 -------------PVEGISTSLLHEDE-------RETVTHRKLEPGANLTSEAA-GGIEV-LVLDGDVTV----ND----  180 (223)
T ss_dssp             -------------CBTTEEEEEEEECS-------SCEEEEEEECTTCEEEECCS-SCEEE-EEEEEEEEE----TT----
T ss_pred             -------------CCCCeEEEEEecCC-------CcEEEEEEECCCCccCCCCC-CcEEE-EEEEeEEEE----CC----
Confidence                         0123 333333221       34577899999999999998 88887 999999542    21    


Q ss_pred             cccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEec
Q 040805          419 SSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS  463 (540)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~  463 (540)
                                             ..+.+||-+..|.|..|...++
T Consensus       181 -----------------------~~~~~GsWlR~P~gs~h~~~ag  202 (223)
T 3o14_A          181 -----------------------EVLGRNAWLRLPEGEALSATAG  202 (223)
T ss_dssp             -----------------------EEECTTEEEEECTTCCEEEEEE
T ss_pred             -----------------------ceECCCeEEEeCCCCccCcEEC
Confidence                                   2588999999999999998884

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=98.25  E-value=4.4e-06  Score=71.79  Aligned_cols=71  Identities=11%  Similarity=0.214  Sum_probs=57.0

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      ++.+..+.+.||.-..+|||+ ..+++||++|++.+.+   ++                      +.  ..|++||+++|
T Consensus        37 ~~~~~~~~~~~g~~~~~H~h~-~~e~~~vl~G~~~~~i---~~----------------------~~--~~l~~Gd~i~i   88 (114)
T 2ozj_A           37 RVQISLFSFADGESVSEEEYF-GDTLYLILQGEAVITF---DD----------------------QK--IDLVPEDVLMV   88 (114)
T ss_dssp             SEEEEEEEEETTSSCCCBCCS-SCEEEEEEEEEEEEEE---TT----------------------EE--EEECTTCEEEE
T ss_pred             CceEEEEEECCCCccccEECC-CCeEEEEEeCEEEEEE---CC----------------------EE--EEecCCCEEEE
Confidence            466777888999999999985 6899999999999875   22                      22  37999999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEE
Q 040805          453 PAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F  473 (540)
                      |+|.+|.+.|.  +++.++++
T Consensus        89 ~~~~~H~~~~~--~~~~~~~i  107 (114)
T 2ozj_A           89 PAHKIHAIAGK--GRFKMLQI  107 (114)
T ss_dssp             CTTCCBEEEEE--EEEEEEEE
T ss_pred             CCCCcEEEEeC--CCcEEEEE
Confidence            99999998886  35555543

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=98.24  E-value=2.3e-06  Score=72.78  Aligned_cols=70  Identities=21%  Similarity=0.121  Sum_probs=52.7

Q ss_pred             EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCC
Q 040805          376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAG  455 (540)
Q Consensus       376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG  455 (540)
                      ...+.+.||.. .+|||+...++.||++|++.+.+-.  +                      +.  ..|++||+++||+|
T Consensus        30 ~~~~~~~~g~~-~~H~H~~~~E~~~Vl~G~~~~~~~~--~----------------------~~--~~l~~Gd~~~ip~~   82 (107)
T 2i45_A           30 QFHLVKLLGDY-GWHTHGYSDKVLFAVEGDMAVDFAD--G----------------------GS--MTIREGEMAVVPKS   82 (107)
T ss_dssp             EEEEEEEEEEC-CCBCC--CCEEEEESSSCEEEEETT--S----------------------CE--EEECTTEEEEECTT
T ss_pred             EEEEEECCCCC-cceeCCCCCEEEEEEeCEEEEEECC--C----------------------cE--EEECCCCEEEECCC
Confidence            44566778874 5999988799999999999987532  1                      12  36999999999999


Q ss_pred             CeEEEEecCCCCEEEEEEE
Q 040805          456 HPVVTVASQNNNLEVVCFE  474 (540)
Q Consensus       456 ~~h~~~n~~~e~l~~v~F~  474 (540)
                      .+|.+.|.  +++.++.|.
T Consensus        83 ~~H~~~~~--~~~~~l~i~   99 (107)
T 2i45_A           83 VSHRPRSE--NGCSLVLIE   99 (107)
T ss_dssp             CCEEEEEE--EEEEEEEEE
T ss_pred             CcEeeEeC--CCeEEEEEE
Confidence            99998885  356666664

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=98.21  E-value=4.9e-06  Score=69.33  Aligned_cols=68  Identities=12%  Similarity=0.227  Sum_probs=51.2

Q ss_pred             eEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC
Q 040805          375 TVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA  454 (540)
Q Consensus       375 sv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa  454 (540)
                      .+....+.  +...+|||+.+.+++||++|++.+.+-   +                      +.  ..|.+||+++||+
T Consensus        32 ~~~~~~~~--~~~~~H~H~~~~e~~~v~~G~~~~~~~---~----------------------~~--~~l~~Gd~~~ip~   82 (102)
T 3d82_A           32 QFKLVKVE--GEFVWHEHADTDEVFIVMEGTLQIAFR---D----------------------QN--ITLQAGEMYVIPK   82 (102)
T ss_dssp             EEEEEEEE--EECCCBCCTTCCEEEEEEESEEEEECS---S----------------------CE--EEEETTEEEEECT
T ss_pred             EEEEEEEC--CCCCceeCCCCcEEEEEEeCEEEEEEC---C----------------------EE--EEEcCCCEEEECC
Confidence            33344443  458899998889999999999988742   1                      12  3689999999999


Q ss_pred             CCeEEEEecCCCCEEEEEE
Q 040805          455 GHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       455 G~~h~~~n~~~e~l~~v~F  473 (540)
                      |.+|.+.|.+  +..++.+
T Consensus        83 ~~~H~~~~~~--~~~~l~i   99 (102)
T 3d82_A           83 GVEHKPMAKE--ECKIMII   99 (102)
T ss_dssp             TCCBEEEEEE--EEEEEEE
T ss_pred             CCeEeeEcCC--CCEEEEE
Confidence            9999988863  4556555

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=98.19  E-value=2.4e-05  Score=67.79  Aligned_cols=100  Identities=20%  Similarity=0.174  Sum_probs=65.8

Q ss_pred             eeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCccccc--ccCCCcEEEEEEeceEEEEEEcCCCCCC
Q 040805          341 TFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPF--YNSRSTKVAVVVAGDGYIEIACPHVSRS  418 (540)
Q Consensus       341 ~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH--~h~~A~ei~yV~~G~g~v~vv~p~~~~~  418 (540)
                      +.||++.-|. +........+       +++-++.+.++. .+|....|+  +|....+++||++|++.+.+=..     
T Consensus         6 ~~nl~~~~~~-~~~~~~~~~l-------~~~~~~~i~~i~-~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~~~~-----   71 (112)
T 2opk_A            6 HGNLFADVPV-GAPDEIFQPL-------LERKGLKIERII-SNGQASPPGFWYDSPQDEWVMVVSGSAGIECEGD-----   71 (112)
T ss_dssp             EEETTSSCCT-TCSSCEEEEE-------EEETTEEEEEEE-ESSCCCCTTCCBCCSSEEEEEEEESCEEEEETTC-----
T ss_pred             ccchhhcCCC-CCCCceEEEe-------ecCCCEEEEEEE-eCCccCCCCccccCCccEEEEEEeCeEEEEECCE-----
Confidence            4688876553 2222333222       233356676664 445555553  66788899999999999975221     


Q ss_pred             cccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCC-CEEEEEEE
Q 040805          419 SSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNN-NLEVVCFE  474 (540)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e-~l~~v~F~  474 (540)
                                          .....|++||.++||+|.+|.+.|.+++ ...|+++.
T Consensus        72 --------------------~~~~~l~~Gd~i~ipa~~~H~~~n~~~~~~~~~l~v~  108 (112)
T 2opk_A           72 --------------------TAPRVMRPGDWLHVPAHCRHRVAWTDGGEPTVWLAVH  108 (112)
T ss_dssp             --------------------SSCEEECTTEEEEECTTCCEEEEEECSSSCEEEEEEE
T ss_pred             --------------------EEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEE
Confidence                                1002699999999999999999987664 56677653

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=98.17  E-value=5.8e-06  Score=74.32  Aligned_cols=69  Identities=6%  Similarity=0.168  Sum_probs=56.3

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      .|.+..+.+.||   ..|||....|++||++|++.+++=   +                      +.+  .|++||+++|
T Consensus        56 ~~~~~~~~~~pG---~~~~h~~~~E~~~VLeG~~~l~~~---g----------------------~~~--~l~~GD~i~~  105 (133)
T 2pyt_A           56 SMAAGFMQWDNA---FFPWTLNYDEIDMVLEGELHVRHE---G----------------------ETM--IAKAGDVMFI  105 (133)
T ss_dssp             SSEEEEEEEEEE---EEEEECSSEEEEEEEEEEEEEEET---T----------------------EEE--EEETTCEEEE
T ss_pred             cEEEEEEEECCC---CccccCCCCEEEEEEECEEEEEEC---C----------------------EEE--EECCCcEEEE
Confidence            588999999999   467888899999999999999862   2                      233  7999999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEE
Q 040805          453 PAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F  473 (540)
                      |+|.+|.+.+.  +++.+++.
T Consensus       106 p~g~~h~~~~~--~~~~~l~v  124 (133)
T 2pyt_A          106 PKGSSIEFGTP--TSVRFLYV  124 (133)
T ss_dssp             CTTCEEEEEEE--EEEEEEEE
T ss_pred             CCCCEEEEEeC--CCEEEEEE
Confidence            99999988764  45666654

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=98.17  E-value=6.9e-06  Score=85.85  Aligned_cols=72  Identities=21%  Similarity=0.294  Sum_probs=62.2

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      .+.+.+..|.||....||-|.+++|+||++|+|.+.|    +..++.+++||+|+||+++.|.+.|++   ++.++++-
T Consensus       278 ti~~~~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I----~~~~~~w~~gD~fvvP~w~~h~~~n~~---~a~Lf~~~  349 (368)
T 3nw4_A          278 TLRCEFHRLRAGTETATRNEVGSTVFQVFEGAGAVVM----NGETTKLEKGDMFVVPSWVPWSLQAET---QFDLFRFS  349 (368)
T ss_dssp             SCEEEEEEECTTCBCCCEEESSCEEEEEEESCEEEEE----TTEEEEECTTCEEEECTTCCEEEEESS---SEEEEEEE
T ss_pred             hHHhheEEECCCCccCCeeccccEEEEEEeCcEEEEE----CCEEEEecCCCEEEECCCCcEEEEeCC---CEEEEEEe
Confidence            4556666889999999999988899999999999988    567899999999999999999999963   57766554

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=98.17  E-value=7.4e-06  Score=85.06  Aligned_cols=80  Identities=9%  Similarity=0.021  Sum_probs=61.1

Q ss_pred             cceEEEEEEcCCCccc---ccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcE
Q 040805          373 DITVSYANISKGAMAA---PFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSA  449 (540)
Q Consensus       373 ~isv~~~~L~pggm~~---PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV  449 (540)
                      .+.+. ..+.|++...   ||||++..|++||++|++.+.+-..++..                    +.  ..|++||+
T Consensus        47 ~~~~~-~~~~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~--------------------~~--~~L~~GD~  103 (350)
T 1juh_A           47 AFTLM-GTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQ--------------------QT--RVLSSGDY  103 (350)
T ss_dssp             SCEEE-EEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCC--------------------EE--EEEETTCE
T ss_pred             cEEEE-EEEcCCCCCCCCccccCCCceEEEEEEEEEEEEEECCcCCce--------------------EE--EEECCCCE
Confidence            45566 5667776655   89999999999999999999887643310                    22  47999999


Q ss_pred             EEECCCCeEEEEecCCCCEEEEEEEec
Q 040805          450 YIVPAGHPVVTVASQNNNLEVVCFEIN  476 (540)
Q Consensus       450 ~vVPaG~~h~~~n~~~e~l~~v~F~~~  476 (540)
                      ++||+|.+|.+.|.+++. .++++.+.
T Consensus       104 v~ip~g~~H~~~n~~~~~-~~l~v~~p  129 (350)
T 1juh_A          104 GSVPRNVTHTFQIQDPDT-EMTGVIVP  129 (350)
T ss_dssp             EEECTTEEEEEEECSTTE-EEEEEEES
T ss_pred             EEECCCCcEEEEeCCCCC-EEEEEEcC
Confidence            999999999999976665 66655334

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=98.14  E-value=6.6e-06  Score=77.34  Aligned_cols=77  Identities=14%  Similarity=0.177  Sum_probs=64.4

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      |+.+.+++|.||+-..+|.|. ..+++||++|++.+.+-.  +                      +.  ..|++||++ |
T Consensus        78 G~~~~~v~l~PG~~~~~H~H~-~eE~~~VLeGel~l~ld~--g----------------------e~--~~L~~GDsi-~  129 (172)
T 3es1_A           78 GSVIRVVDMLPGKESPMHRTN-SIDYGIVLEGEIELELDD--G----------------------AK--RTVRQGGII-V  129 (172)
T ss_dssp             SEEEEEEEECTTCBCCCBCCS-EEEEEEEEESCEEEECGG--G----------------------CE--EEECTTCEE-E
T ss_pred             CeEEEEEEECCCCCCCCeecC-ceEEEEEEeCEEEEEECC--C----------------------eE--EEECCCCEE-E
Confidence            788999999999999999974 667899999999987531  1                      12  369999999 9


Q ss_pred             CCCCeEEEEecCCCCEEEEEEEecC
Q 040805          453 PAGHPVVTVASQNNNLEVVCFEINA  477 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F~~~a  477 (540)
                      |+|.+|.+.|.+++++.++++.+.+
T Consensus       130 ~~g~~H~~~N~g~~~ar~l~V~~P~  154 (172)
T 3es1_A          130 QRGTNHLWRNTTDKPCRIAFILIEA  154 (172)
T ss_dssp             ECSCCBEEECCSSSCEEEEEEEEEC
T ss_pred             eCCCcEEEEeCCCCCEEEEEEEcCC
Confidence            9999999999988999988775554

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.09  E-value=1.2e-05  Score=82.61  Aligned_cols=88  Identities=19%  Similarity=0.379  Sum_probs=70.9

Q ss_pred             eeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCC-C---cEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805          181 LGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKR-G---DIIRVPSGNTFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       181 l~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~-G---Dv~~iPaG~~h~~~N~g~~e~l~~v~i  255 (540)
                      ..+.+++||...-.||| +..++++|++|++.+.+-++...+.+.+.. |   |+++||+|..|.+.|.+ +++++++.+
T Consensus       274 ~~ls~~~~g~~rg~h~h~~~~e~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~g~~h~~~n~~-~~~~~~~~~  352 (369)
T 3st7_A          274 VSVNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDDEIIEYYVSGDKLEVVDIPVGYTHNIENLG-DTDMVTIMW  352 (369)
T ss_dssp             EEEEEECTTCEEEEEECSSCCEEEEEEESEEEEEEEETTCCCCEEEEEETTBCCEEEECTTEEEEEEECS-SSCEEEEEE
T ss_pred             EEEEEecCCceeccccccCcceEEEEEeeeEEEEEEcCCCCcEEEEEecCCcceEEEeCCCceEEeEEcC-CCcEEEEEe
Confidence            44558899999988887 577999999999999887776666777776 7   99999999999999998 458998888


Q ss_pred             eecCCCCCcccccc
Q 040805          256 IKSINLPGQYEAFY  269 (540)
Q Consensus       256 ~~~~~~pg~~~~f~  269 (540)
                      .+...+|....+|+
T Consensus       353 ~~~~y~~~~~d~~~  366 (369)
T 3st7_A          353 VNEMFDPNQPDTYF  366 (369)
T ss_dssp             ESSCCCSSSCCCEE
T ss_pred             cCcccCCCCCcccc
Confidence            76665565555554

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=98.05  E-value=1.7e-05  Score=71.50  Aligned_cols=61  Identities=16%  Similarity=0.274  Sum_probs=50.3

Q ss_pred             cccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          193 TPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       193 ~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      .||.++.-+++||++|++.+.+    +..++.+++||+++||+|.+|...+.+++++..++.+..
T Consensus        32 ~p~~h~~~~i~~v~~G~~~~~i----~~~~~~l~~Gd~~~i~p~~~H~~~~~~~~~~~~~~~i~f   92 (164)
T 2arc_A           32 RPLGMKGYILNLTIRGQGVVKN----QGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYF   92 (164)
T ss_dssp             ETTCCSSEEEEEEEEECEEEEE----TTEEEEECTTCEEEECTTCCEEEEECTTSSEEEEEEEEE
T ss_pred             cccCCCceEEEEEEEeEEEEEE----CCEEEEecCCeEEEEcCCCCEEEEeCCCCCcEEEEEEEE
Confidence            4888899999999999999988    567899999999999999999998865224555555543

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=98.05  E-value=3.9e-05  Score=70.57  Aligned_cols=72  Identities=10%  Similarity=0.127  Sum_probs=56.3

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      .+++.++++. ++  ..+||...+|+.||++|++.+++   ++                      +.  ..|++||+++|
T Consensus        65 ~~s~g~~~~e-~~--~~~~~~~~eE~~yVLeG~~~l~i---~g----------------------~~--~~l~~GD~i~i  114 (151)
T 4axo_A           65 RLGCGMMEMK-ET--TFDWTLNYDEIDYVIDGTLDIII---DG----------------------RK--VSASSGELIFI  114 (151)
T ss_dssp             SCEEEEEEEE-EE--EEEEECSSEEEEEEEEEEEEEEE---TT----------------------EE--EEEETTCEEEE
T ss_pred             cEEEEEEEEc-Cc--cccEeCCCcEEEEEEEeEEEEEE---CC----------------------EE--EEEcCCCEEEE
Confidence            5788888887 33  35688899999999999999986   33                      23  36999999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEEEec
Q 040805          453 PAGHPVVTVASQNNNLEVVCFEIN  476 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F~~~  476 (540)
                      |+|.+|.+.|.  +.+.+++..+.
T Consensus       115 P~G~~h~~~n~--~~a~~l~V~~P  136 (151)
T 4axo_A          115 PKGSKIQFSVP--DYARFIYVTYP  136 (151)
T ss_dssp             CTTCEEEEEEE--EEEEEEEEEEC
T ss_pred             CCCCEEEEEeC--CCEEEEEEECC
Confidence            99999998886  46666665433

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=98.04  E-value=1.5e-05  Score=74.46  Aligned_cols=61  Identities=16%  Similarity=0.292  Sum_probs=51.7

Q ss_pred             eeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          185 IANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       185 ~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      .-.||+-+.-|+++.+|++||++|..+|.+.+.+......|++||+|++|+|++|+-...+
T Consensus        41 v~Gpn~r~d~H~h~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~lP~gvpH~P~r~~  101 (174)
T 1yfu_A           41 VGGPNHRTDYHDDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVRHSPQRPE  101 (174)
T ss_dssp             ECSCBCCCCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEEBCC
T ss_pred             EcCCCcCccCcCCCCceEEEEEeeEEEEEEEcCCceeeEEECCCCEEEeCCCCCcCccccC
Confidence            3456666677777899999999999999998865566899999999999999999987654

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=98.02  E-value=3.2e-06  Score=79.99  Aligned_cols=69  Identities=14%  Similarity=0.102  Sum_probs=53.1

Q ss_pred             CcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecC
Q 040805          385 AMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQ  464 (540)
Q Consensus       385 gm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~  464 (540)
                      +.+.+|+|+. .+|.||++|+|.+.|. .++                      +.+...|++||+++||+|.+|+..+..
T Consensus        91 ~~~~~H~H~~-~Ei~~Vl~G~g~~~i~-~~d----------------------~~~~~~l~~GDli~IP~g~~H~~~~~~  146 (179)
T 1zrr_A           91 KFLNEHTHGE-DEVRFFVEGAGLFCLH-IGD----------------------EVFQVLCEKNDLISVPAHTPHWFDMGS  146 (179)
T ss_dssp             HHHSCBEESS-CEEEEEEESCCCCCEE-CSS----------------------CEEEEECCCSCEEEECTTCCBCCCCSS
T ss_pred             ccccceECCh-heEEEEEcceEEEEEE-eCC----------------------EEEEEEECCCCEEEECCCCeEeeecCC
Confidence            3467899986 8999999999999877 322                      344456999999999999999988765


Q ss_pred             CCCEEEEEEEecC
Q 040805          465 NNNLEVVCFEINA  477 (540)
Q Consensus       465 ~e~l~~v~F~~~a  477 (540)
                      +..+..+-|+++.
T Consensus       147 ~~~~~~ir~F~~~  159 (179)
T 1zrr_A          147 EPNFTAIRIFDNP  159 (179)
T ss_dssp             CSSCEEEEEECCG
T ss_pred             CceEEEEEeccCC
Confidence            5556666555443

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=97.93  E-value=1.2e-05  Score=73.22  Aligned_cols=71  Identities=4%  Similarity=-0.090  Sum_probs=55.5

Q ss_pred             eeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceE--EeeCCCcEEEECCCCeEE-EEeCCCCccEEEEEEe
Q 040805          180 RLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRES--YNVKRGDIIRVPSGNTFY-VTNTDDDEKLYIVKFI  256 (540)
Q Consensus       180 rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~--~~l~~GDv~~iPaG~~h~-~~N~g~~e~l~~v~i~  256 (540)
                      .++++.++||+.+.+|.|...+.+||++|+....    .+.+.  ..+++||++++|+|..|. ..+..   .+.++.++
T Consensus        45 ~~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~~----~g~~~~~~~~~~Gd~~~~p~g~~H~p~~~~e---~~~~l~~~  117 (145)
T 2o1q_A           45 WTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVR----GGKAAGGDTAIAPGYGYESANARHDKTEFPV---ASEFYMSF  117 (145)
T ss_dssp             EEEEEEECTTEEECCEEESSCEEEEEEEEEEEET----TCGGGTSEEEESSEEEEECTTCEESCCEEEE---EEEEEEEE
T ss_pred             EEEEEEECCCCCCCccCCCCCEEEEEEEeEEEEc----CCCEecceEeCCCEEEEECcCCccCCeECCC---CeEEEEEE
Confidence            4667799999999999898888899999998643    34444  789999999999999999 55432   35555555


Q ss_pred             e
Q 040805          257 K  257 (540)
Q Consensus       257 ~  257 (540)
                      .
T Consensus       118 ~  118 (145)
T 2o1q_A          118 L  118 (145)
T ss_dssp             E
T ss_pred             C
Confidence            3

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=97.87  E-value=5.7e-05  Score=73.16  Aligned_cols=94  Identities=13%  Similarity=0.125  Sum_probs=75.1

Q ss_pred             CcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCC
Q 040805          349 PSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSS  428 (540)
Q Consensus       349 P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~  428 (540)
                      +.|.+.+|....+.+...  ...-+|.+.++.|.||.....|-|+ +.||.||++|.+.+.+-..               
T Consensus       109 ~~f~~~~a~~elvGP~g~--~~s~~l~lG~v~l~PG~~yP~HsHp-~EEiy~VLsG~~e~~v~~g---------------  170 (217)
T 4b29_A          109 RDFLNRFGWFELAGPSGH--FLTQSLRVTVGYWGPGLDYGWHEHL-PEELYSVVSGRALFHLRNA---------------  170 (217)
T ss_dssp             HHHHHHEEEEEEEETTSS--EECSSCEEEEEEECSSCEEEEEECS-SEEEEEEEEECEEEEETTS---------------
T ss_pred             hhHHhCceEEEEECCCCC--CCCCeEEEEEEEECCCCcCCCCCCC-CceEEEEEeCCEEEEECCC---------------
Confidence            367788898878876533  2334799999999999999999997 7899999999999986422               


Q ss_pred             ccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEE
Q 040805          429 TREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVC  472 (540)
Q Consensus       429 ~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~  472 (540)
                               ..  ..+.+||++++|+|.+|++.+ +++++..+.
T Consensus       171 ---------~~--~~l~pGd~v~ipsgv~Ha~rt-~dePllalw  202 (217)
T 4b29_A          171 ---------PD--LMLEPGQTRFHPANAPHAMTT-LTDPILTLV  202 (217)
T ss_dssp             ---------CC--EEECTTCEEEECTTCCEEEEC-CSSCEEEEE
T ss_pred             ---------CE--EecCCCCEEEcCCCCceeEEE-CCccEEEEE
Confidence                     11  369999999999999999986 578886443

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=97.79  E-value=7.6e-05  Score=69.71  Aligned_cols=60  Identities=13%  Similarity=0.120  Sum_probs=49.2

Q ss_pred             eCCCccccccccCCCeEEEEEeeEEEEEEEecC----CceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          186 ANPQTFVTPTHLDADAVFFVSWGQGTITVIREN----NRESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       186 l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~----~~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      =.||.-+-=||+..+|++||++|..+|.+++.+    ......|++||+|++|+|++|+-.-..
T Consensus        41 gGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~gvpHsP~r~~  104 (176)
T 1zvf_A           41 GGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFA  104 (176)
T ss_dssp             CSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECT
T ss_pred             cCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCCCCCcCCcccC
Confidence            345565555667899999999999999999855    245789999999999999999986654

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=97.79  E-value=3.2e-05  Score=66.14  Aligned_cols=67  Identities=7%  Similarity=-0.002  Sum_probs=48.7

Q ss_pred             EEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCC
Q 040805          376 VSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAG  455 (540)
Q Consensus       376 v~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG  455 (540)
                      +....+.||...   ||....|++||++|++.+.+-  ++                      +.  ..|++||+++||+|
T Consensus        33 ~~~~~~~pg~~~---~hH~~~E~~~Vl~G~~~~~i~--~g----------------------~~--~~l~~GD~i~ip~g   83 (101)
T 1o5u_A           33 WPIWEKEVSEFD---WYYDTNETCYILEGKVEVTTE--DG----------------------KK--YVIEKGDLVTFPKG   83 (101)
T ss_dssp             SCEEEECSEEEE---EECSSCEEEEEEEEEEEEEET--TC----------------------CE--EEEETTCEEEECTT
T ss_pred             EEEEEeCCCccc---ccCCceEEEEEEeCEEEEEEC--CC----------------------CE--EEECCCCEEEECCC
Confidence            345677787642   445689999999999999862  12                      12  36999999999999


Q ss_pred             CeEEEEecCCCCEEEE
Q 040805          456 HPVVTVASQNNNLEVV  471 (540)
Q Consensus       456 ~~h~~~n~~~e~l~~v  471 (540)
                      .+|.+.|.++....++
T Consensus        84 ~~H~~~n~~~~~~~yv   99 (101)
T 1o5u_A           84 LRCRWKVLEPVRKHYN   99 (101)
T ss_dssp             CEEEEEEEEEEEEEEE
T ss_pred             CcEEEEeCCCeeEEEE
Confidence            9999888654333333

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=97.78  E-value=0.00034  Score=65.43  Aligned_cols=129  Identities=15%  Similarity=0.161  Sum_probs=83.8

Q ss_pred             cCCceEEEeccCccccccccc-cccceeeeeeeCCCccccccccCCCeEEEEEeeEE-EEEEEecCCce-EE----eeCC
Q 040805          155 SQHGRVAFLPKFTQRSKLLRG-LEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQG-TITVIRENNRE-SY----NVKR  227 (540)
Q Consensus       155 ~e~G~i~~l~~f~~~~~~L~G-i~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g-~ig~V~~~~~~-~~----~l~~  227 (540)
                      .|+|.++..-+.+   +.-.| =...-..++-|.+|.....|-.+++||.|...|.+ .+.++.+++.. +.    +|.+
T Consensus        27 PEGG~yret~rs~---~~~~~~R~~~T~IYfLL~~g~~S~~HRv~sdEiW~~~~G~pL~l~l~~~dg~~~~~~LG~dv~~  103 (170)
T 1yud_A           27 VEGGFYRSSYRSE---TAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAA  103 (170)
T ss_dssp             TTSSEEEEEEECS---SBSSSSSBSCEEEEEEEETTCCEEEEECSSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTT
T ss_pred             CCCceEEEeecCC---CCCCCCCccceEEEEEECCCCCCeeEEcCCCEEEEEEcCCCEEEEEEcCCCCEEEEEeCCCccc
Confidence            4788888763321   10011 12234556678899876666678999999999997 88888887553 32    5789


Q ss_pred             CcE--EEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHH
Q 040805          228 GDI--IRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERV  302 (540)
Q Consensus       228 GDv--~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l  302 (540)
                      |++  ++||+|+-+...+.++ +.+.+-|+..|.-   .|..|-|+            +.+-|.+.|---.+.|++|
T Consensus       104 Ge~pQ~vVP~G~wqaa~~~~g-~~~LV~C~VaPGF---~f~dfel~------------~~~~L~~~~P~~~~~I~~l  164 (170)
T 1yud_A          104 GERPQFLVPKGCIFGSAMNQD-GFSLVGCMVSPGF---TFDDFELF------------SQEALLAMYPQHKAVVQKL  164 (170)
T ss_dssp             TEESCEEECTTCEEEEEESSS-SEEEEEEEESSCC---CGGGCCBC------------BHHHHHHSCCTTHHHHTTS
T ss_pred             CceeEEEECCCCEEEEEECCC-CcEEEEEEECCCc---cCCceEEc------------CHHHHHhHCchhHHHHHHh
Confidence            999  9999999999999843 4566666664433   35566554            3445555554444444443

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=97.71  E-value=7.1e-05  Score=69.79  Aligned_cols=73  Identities=10%  Similarity=0.062  Sum_probs=56.8

Q ss_pred             ceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCC-CccEEEEEEe
Q 040805          179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDD-DEKLYIVKFI  256 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~-~e~l~~v~i~  256 (540)
                      ..+.++.+.||+.+.+|.|...+.+|||+|+....    +. ..+.+++||.+++|+|..|...+..+ +++++++.+.
T Consensus        43 ~~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~f~~~----~~-~~~~~~aGd~~~~P~g~~H~~~a~~~~~~gci~l~v~  116 (165)
T 3cjx_A           43 LMVMRASFAPGLTLPLHFHTGTVHMYTISGCWYYT----EY-PGQKQTAGCYLYEPGGSIHQFNTPRDNEGQTEVIFML  116 (165)
T ss_dssp             EEEEEEEECTTCBCCEEEESSCEEEEEEESEEEET----TC-TTSCEETTEEEEECTTCEECEECCTTCSSCEEEEEEE
T ss_pred             cEEEEEEECCCCcCCcccCCCCEEEEEEEEEEEEC----CC-ceEEECCCeEEEeCCCCceeeEeCCCCCCCcEEEEEE
Confidence            34667799999999999898999999999987542    11 14678999999999999999998642 2366555544

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=97.67  E-value=0.00012  Score=67.89  Aligned_cols=71  Identities=7%  Similarity=0.177  Sum_probs=56.9

Q ss_pred             ceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeC--CCCccEEEEEEe
Q 040805          179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNT--DDDEKLYIVKFI  256 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~--g~~e~l~~v~i~  256 (540)
                      ..++++.+.||+.+.+|.|...+.+||++|+...   + +.  ...+++||.++.|+|..|...+.  + ++.++++.+.
T Consensus        42 ~~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~---~-e~--~~~~~~Gd~~~~P~g~~H~~~~~~~~-~e~~~~~~~~  114 (159)
T 3ebr_A           42 ETITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRY---K-EH--DWVAHAGSVVYETASTRHTPQSAYAE-GPDIITFNIV  114 (159)
T ss_dssp             EEEEEEEECSSCBCCCEEESSCEEEEEEESCEEE---T-TS--SCCBCTTCEEEECSSEEECEEESSSS-SSCEEEEEEE
T ss_pred             eEEEEEEECCCCCcccccCCCCEEEEEEEeEEEE---e-CC--CeEECCCeEEEECCCCcceeEeCCCC-CCCEEEEEEe
Confidence            5677789999999999989889999999998653   1 11  24799999999999999999997  4 3567666544

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=97.67  E-value=0.00022  Score=73.12  Aligned_cols=77  Identities=13%  Similarity=0.158  Sum_probs=63.1

Q ss_pred             ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCC-C---cE
Q 040805          374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRT-D---SA  449 (540)
Q Consensus       374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-G---DV  449 (540)
                      ......++.||.+..-|||.+.+++++|++|++.+.+-.+...                     +.+  .+.. |   ++
T Consensus       272 ~q~~ls~~~~g~~rg~h~h~~~~e~~~~~~G~~~~~~~~~~~~---------------------~~~--~~~~~~~~~~~  328 (369)
T 3st7_A          272 GQVSVNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDD---------------------EII--EYYVSGDKLEV  328 (369)
T ss_dssp             CEEEEEEECTTCEEEEEECSSCCEEEEEEESEEEEEEEETTCC---------------------CCE--EEEEETTBCCE
T ss_pred             ceEEEEEecCCceeccccccCcceEEEEEeeeEEEEEEcCCCC---------------------cEE--EEEecCCcceE
Confidence            3356678899999999999999999999999999988755431                     233  2333 6   99


Q ss_pred             EEECCCCeEEEEecCCCCEEEEEE
Q 040805          450 YIVPAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       450 ~vVPaG~~h~~~n~~~e~l~~v~F  473 (540)
                      ++||.|+.|.+.|.++++++++.+
T Consensus       329 ~~ip~g~~h~~~n~~~~~~~~~~~  352 (369)
T 3st7_A          329 VDIPVGYTHNIENLGDTDMVTIMW  352 (369)
T ss_dssp             EEECTTEEEEEEECSSSCEEEEEE
T ss_pred             EEeCCCceEEeEEcCCCcEEEEEe
Confidence            999999999999998889988876

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=97.67  E-value=8.1e-05  Score=65.98  Aligned_cols=65  Identities=11%  Similarity=0.202  Sum_probs=50.6

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      .+.+....+.||.... |+|. ..++.||++|++.+.+  .++                      +.  ..|++||+++|
T Consensus        48 ~~~~g~w~~~pG~~~~-~~~~-~~E~~~Vl~G~~~l~~--~~g----------------------~~--~~l~~GD~~~i   99 (123)
T 3bcw_A           48 KVESGVWESTSGSFQS-NTTG-YIEYCHIIEGEARLVD--PDG----------------------TV--HAVKAGDAFIM   99 (123)
T ss_dssp             TEEEEEEEEEEEEEEC-CCTT-EEEEEEEEEEEEEEEC--TTC----------------------CE--EEEETTCEEEE
T ss_pred             CEEEEEEEECCCceee-EcCC-CcEEEEEEEEEEEEEE--CCC----------------------eE--EEECCCCEEEE
Confidence            5788888999998753 5542 2899999999999875  223                      22  36999999999


Q ss_pred             CCCCeEEEEecCC
Q 040805          453 PAGHPVVTVASQN  465 (540)
Q Consensus       453 PaG~~h~~~n~~~  465 (540)
                      |+|.+|.+.|.+.
T Consensus       100 p~g~~h~~~~~~~  112 (123)
T 3bcw_A          100 PEGYTGRWEVDRH  112 (123)
T ss_dssp             CTTCCCEEEEEEE
T ss_pred             CCCCeEEEEECCc
Confidence            9999998888643

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=97.65  E-value=0.00012  Score=66.17  Aligned_cols=79  Identities=20%  Similarity=0.351  Sum_probs=56.2

Q ss_pred             cceeeeeeeCCC----ccc-cccccCCCeEEEEEeeEEEEEEEecC----CceEEeeCCCcEEEECCCCeEEEEeCCCCc
Q 040805          178 KYRLGILIANPQ----TFV-TPTHLDADAVFFVSWGQGTITVIREN----NRESYNVKRGDIIRVPSGNTFYVTNTDDDE  248 (540)
Q Consensus       178 ~~rl~~~~l~Pg----gl~-~Ph~~~A~ei~yV~~G~g~ig~V~~~----~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e  248 (540)
                      ..+|+++...|.    ++. ++.|.+.+|+++|++|+.+|-+-...    ......|++|++++||+|+-|.-....   
T Consensus        24 ~W~Va~~n~~~~~~~~~i~~~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~a~~---  100 (140)
T 3d0j_A           24 KWLVCIKNWKPDNDIEGIAHLEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSITQK---  100 (140)
T ss_dssp             SEEEEEEECCGGGBTTTCCEEEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEEEEECT---
T ss_pred             CEEEEEEeccCcCCcccCHhhccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCcccCCC---
Confidence            356666665665    333 44466899999999999999886421    124679999999999999999988754   


Q ss_pred             cEEEEEEeecCC
Q 040805          249 KLYIVKFIKSIN  260 (540)
Q Consensus       249 ~l~~v~i~~~~~  260 (540)
                      ...++ ++.|.+
T Consensus       101 e~~vL-LiEp~n  111 (140)
T 3d0j_A          101 DTKMM-YVQDSN  111 (140)
T ss_dssp             TCEEE-EEEESC
T ss_pred             ceEEE-EEEeCC
Confidence            35555 344554

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=97.61  E-value=0.00025  Score=62.41  Aligned_cols=72  Identities=13%  Similarity=0.225  Sum_probs=53.6

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      .+..++....||.+.... ...+|++|||+|+++++.   .+.....|++||+++||+|+.--+.-.   ++++=+.++
T Consensus        41 ~~~~GvWe~tPG~~~~~~-~~~~E~~~iLeG~~~lt~---ddG~~~~l~aGD~~~~P~G~~gtWev~---e~vrK~~~~  112 (116)
T 3es4_A           41 GTIVAVWMAEPGIYNYAG-RDLEETFVVVEGEALYSQ---ADADPVKIGPGSIVSIAKGVPSRLEIL---SSFRKLATV  112 (116)
T ss_dssp             CCEEEEEEECSEEEEECC-CSEEEEEEEEECCEEEEE---TTCCCEEECTTEEEEECTTCCEEEEEC---SCEEEEEEE
T ss_pred             CEEEEEEecCCceeECee-CCCcEEEEEEEeEEEEEe---CCCeEEEECCCCEEEECCCCeEEEEEe---EEEeEEEEE
Confidence            456788899999986443 334599999999998775   345678999999999999998777554   344444443

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=97.56  E-value=0.0005  Score=63.60  Aligned_cols=95  Identities=12%  Similarity=0.073  Sum_probs=67.0

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      +..+..+++.||+.+.+|.|+. .+.+||++|+..+.   .++                          ..+.+||.++.
T Consensus        41 g~~v~lvr~~pG~~~p~H~H~g-~ee~~VL~G~~~~~---e~~--------------------------~~~~~Gd~~~~   90 (159)
T 3ebr_A           41 GETITLLKAPAGMEMPRHHHTG-TVIVYTVQGSWRYK---EHD--------------------------WVAHAGSVVYE   90 (159)
T ss_dssp             TEEEEEEEECSSCBCCCEEESS-CEEEEEEESCEEET---TSS--------------------------CCBCTTCEEEE
T ss_pred             CeEEEEEEECCCCCcccccCCC-CEEEEEEEeEEEEe---CCC--------------------------eEECCCeEEEE
Confidence            5778899999999999999976 78899999998752   211                          25889999999


Q ss_pred             CCCCeEEEEec--CCCCEEEEEEEecCCCCccccccccccccccCCHHHHH
Q 040805          453 PAGHPVVTVAS--QNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKE  501 (540)
Q Consensus       453 PaG~~h~~~n~--~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla  501 (540)
                      |+|..|...+.  +++++.++...+..    ..|+....+++.-++-..+.
T Consensus        91 P~g~~H~~~~~~~~~e~~~~~~~~~G~----l~~~~~~g~~~~~~d~~~~~  137 (159)
T 3ebr_A           91 TASTRHTPQSAYAEGPDIITFNIVAGE----LLYLDDKDNIIAVENWKTSM  137 (159)
T ss_dssp             CSSEEECEEESSSSSSCEEEEEEEESC----EEEECTTCCEEEEECHHHHH
T ss_pred             CCCCcceeEeCCCCCCCEEEEEEecCc----cEecCCCCCEEEEcCHHHHH
Confidence            99999998887  66777655432221    12333334455554444333

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=97.47  E-value=0.00087  Score=62.78  Aligned_cols=82  Identities=15%  Similarity=0.167  Sum_probs=64.8

Q ss_pred             cceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCc-----eEEeeCCCcEEEECCCCeEEEEeCCCCccEE
Q 040805          178 KYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNR-----ESYNVKRGDIIRVPSGNTFYVTNTDDDEKLY  251 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~-----~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~  251 (540)
                      .+.+.+++..||....+|=| ++..+++|++|+.+.++....+.     .+..+.+||++++|+|.+|.+.|.++ ++++
T Consensus        68 ~~~v~~l~W~PGq~S~iHdH~~s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~~~~~~~~iH~V~N~~~-~~aV  146 (171)
T 3eqe_A           68 ELEIIVINIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGECLISTKGLIHKMSNPTS-ERMV  146 (171)
T ss_dssp             SCEEEEEEECTTCBCCEECCTTCEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCEEEECTTCEEEEECCSS-SCEE
T ss_pred             CeEEEEEEECCCCCcccccCCCceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcEEEeCCCCEEEEECCCC-CCEE
Confidence            34566679999998877755 47889999999999887653222     35789999999999999999999984 7888


Q ss_pred             EEEEeecCC
Q 040805          252 IVKFIKSIN  260 (540)
Q Consensus       252 ~v~i~~~~~  260 (540)
                      .|-++-|..
T Consensus       147 SlHvY~pp~  155 (171)
T 3eqe_A          147 SLHVYSPPL  155 (171)
T ss_dssp             EEEEEESCC
T ss_pred             EEEEeCCCc
Confidence            887775543

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=97.40  E-value=0.00054  Score=67.49  Aligned_cols=64  Identities=20%  Similarity=0.282  Sum_probs=51.8

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      .+..+++...||. ..+.+++.+|++|||+|+++++.   .+.....+++||+++||+|+.--+.-..
T Consensus       166 ~~~~GiW~~tpG~-~~~~~~~~~E~~~ILeG~v~lt~---~~G~~~~~~aGD~~~~P~G~~~tWev~e  229 (238)
T 3myx_A          166 TLRIGVWDSTPYE-RISRPHKIHELMNLIEGRVVLSL---ENGSSLTVNTGDTVFVAQGAPCKWTSTG  229 (238)
T ss_dssp             SCEEEEEEECCEE-BCCEECSSCEEEEEEECCEEEEE---TTSCEEEECTTCEEEECTTCEEEEEESS
T ss_pred             CEEEeEEEeCCCE-EECCcCCCCEEEEEEEeEEEEEe---CCCCEEEECCCCEEEECCCCEEEEEECc
Confidence            4677888999998 45656688999999999997764   3456789999999999999987776653

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=97.40  E-value=0.041  Score=54.60  Aligned_cols=106  Identities=13%  Similarity=0.160  Sum_probs=66.9

Q ss_pred             ccceeecCCceEEEeccC--cc-ccccccccccce-eeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEE
Q 040805          149 ESSRVTSQHGRVAFLPKF--TQ-RSKLLRGLEKYR-LGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESY  223 (540)
Q Consensus       149 f~~~~~~e~G~i~~l~~f--~~-~~~~L~Gi~~~r-l~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~  223 (540)
                      ...+-.+++|.+.+...|  .. .+|.+.+...+| +....+.|+.-+.||=| +-+.|.||++|+..-.  +. -....
T Consensus        30 ~~~rg~~~~gwl~~~~~fsf~~~~dP~~~~fg~l~vln~~~~~pg~gf~~HPHrg~EtvTyvl~G~~~H~--DS-~Gn~~  106 (256)
T 2vec_A           30 ARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYR--DS-EGNHV  106 (256)
T ss_dssp             CCCCSSSCTTGGGCCEEEECCCCCBTTBCSCCCEEEEEEEEECTTCEEEEECCSSEEEEEEEEESEEEEE--ET-TSCEE
T ss_pred             HHHCCCcccCCEEEEEeccCccccCHhHhcCCceEeccccccCCCCccCCcCCCCcEEEEEEEeeEEEEE--eC-CCCEE
Confidence            334556666633222212  11 124444444444 44556889866667755 4566889999986433  22 23457


Q ss_pred             eeCCCcEEEECCC--CeEEEEeCCCCccEEEEEEee
Q 040805          224 NVKRGDIIRVPSG--NTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       224 ~l~~GDv~~iPaG--~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      .|++|||-+..||  +.|.-.|..+++++.++-|..
T Consensus       107 ~i~~GdvQ~MtAG~GI~HsE~n~~~~~~l~~lQlWi  142 (256)
T 2vec_A          107 QASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLWL  142 (256)
T ss_dssp             EEETTEEEEECCCTTCCEEEEECCSSSCEEEEEEEE
T ss_pred             EECCCeEEEEECCCCeEEEEEECCCCceEEEEEEEE
Confidence            8999999999876  699999976557888887763

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=97.28  E-value=0.0011  Score=62.19  Aligned_cols=78  Identities=15%  Similarity=0.255  Sum_probs=56.5

Q ss_pred             ceeeeeeeCCCcccccccc-C------CCeEEEEEeeEEEEEEEecCCc-------------------eEEeeCCCcEEE
Q 040805          179 YRLGILIANPQTFVTPTHL-D------ADAVFFVSWGQGTITVIRENNR-------------------ESYNVKRGDIIR  232 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~Ph~~-~------A~ei~yV~~G~g~ig~V~~~~~-------------------~~~~l~~GDv~~  232 (540)
                      |-.-++.+.||...+.|+| .      -.|=++|+.|.+++.+  ++..                   ....|++||.+.
T Consensus        53 Y~~K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~--~g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesvt  130 (175)
T 2y0o_A           53 YCSKELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYV--EGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQYT  130 (175)
T ss_dssp             EEEEEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEE--SSSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEEE
T ss_pred             ceEEEEEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEE--CCccccCcceeccCCceeeecCCcEEEECCCCEEE
Confidence            6666678999988777765 4      4577779999977755  4322                   235899999999


Q ss_pred             ECCCCeEEEEeCCCCccEEEEEEeecCCC
Q 040805          233 VPSGNTFYVTNTDDDEKLYIVKFIKSINL  261 (540)
Q Consensus       233 iPaG~~h~~~N~g~~e~l~~v~i~~~~~~  261 (540)
                      ||+|+.||+.|..  +.+ +|.-+.+.+.
T Consensus       131 Ippg~~H~f~age--egv-li~EvSt~~d  156 (175)
T 2y0o_A          131 IPPNTKHWFQAGE--EGA-VVTEMSSTST  156 (175)
T ss_dssp             ECTTCCEEEEEEE--EEE-EEEEEEECCC
T ss_pred             ECCCCcEEEEeCC--CCE-EEEEEeCCCC
Confidence            9999999999932  344 4455556654

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=97.25  E-value=0.0023  Score=59.81  Aligned_cols=59  Identities=5%  Similarity=0.139  Sum_probs=48.1

Q ss_pred             cCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEE
Q 040805          382 SKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTV  461 (540)
Q Consensus       382 ~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~  461 (540)
                      .||+-+.=|.| ...|+.||++|+..+.+...+                       +.-+..|++||+|+||+|.+|.-.
T Consensus        43 Gpn~r~d~H~h-~~dE~FyvlkG~m~i~v~d~g-----------------------~~~~v~l~eGE~f~lP~gvpH~P~   98 (174)
T 1yfu_A           43 GPNHRTDYHDD-PLEEFFYQLRGNAYLNLWVDG-----------------------RRERADLKEGDIFLLPPHVRHSPQ   98 (174)
T ss_dssp             SCBCCCCEEEC-SSCEEEEEEESCEEEEEEETT-----------------------EEEEEEECTTCEEEECTTCCEEEE
T ss_pred             CCCcCccCcCC-CCceEEEEEeeEEEEEEEcCC-----------------------ceeeEEECCCCEEEeCCCCCcCcc
Confidence            56677888876 789999999999999998742                       122347999999999999999987


Q ss_pred             ecC
Q 040805          462 ASQ  464 (540)
Q Consensus       462 n~~  464 (540)
                      +.+
T Consensus        99 r~~  101 (174)
T 1yfu_A           99 RPE  101 (174)
T ss_dssp             BCC
T ss_pred             ccC
Confidence            753

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=97.11  E-value=0.0021  Score=60.30  Aligned_cols=94  Identities=10%  Similarity=0.102  Sum_probs=62.5

Q ss_pred             ceEEEEEEcCCCcccccccCC------CcEEEEEEeceEEEEEEcCCCCCCcc---cccccCCCccccCCccceEEeeee
Q 040805          374 ITVSYANISKGAMAAPFYNSR------STKVAVVVAGDGYIEIACPHVSRSSS---ERRHQGSSTREEGSATYHKVSSRI  444 (540)
Q Consensus       374 isv~~~~L~pggm~~PH~h~~------A~ei~yV~~G~g~v~vv~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l  444 (540)
                      +..-.+.|.||.+...|+|+.      -.|=.+|+.|.+++.+  ++......   -..|.     +..-..-..  -.|
T Consensus        53 Y~~K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~--~g~~~~~~~v~v~dg~-----~~~~~a~~~--i~L  123 (175)
T 2y0o_A           53 YCSKELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYV--EGEKTPLPKVLPPQED-----REHYTVWHE--IEL  123 (175)
T ss_dssp             EEEEEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEE--SSSCCSSCSCCCCGGG-----GGGCCCCEE--EEE
T ss_pred             ceEEEEEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEE--CCccccCcceeccCCc-----eeeecCCcE--EEE
Confidence            788899999999999999999      8888889999977766  32210000   00000     000000012  269


Q ss_pred             CCCcEEEECCCCeEEEEecCCCCEEEEEEEecC
Q 040805          445 RTDSAYIVPAGHPVVTVASQNNNLEVVCFEINA  477 (540)
Q Consensus       445 ~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a  477 (540)
                      ++||.+.||+|.+|++.|. .+++.+..|.+.+
T Consensus       124 ~pGesvtIppg~~H~f~ag-eegvli~EvSt~~  155 (175)
T 2y0o_A          124 EPGGQYTIPPNTKHWFQAG-EEGAVVTEMSSTS  155 (175)
T ss_dssp             CTTCEEEECTTCCEEEEEE-EEEEEEEEEEECC
T ss_pred             CCCCEEEECCCCcEEEEeC-CCCEEEEEEeCCC
Confidence            9999999999999999994 3456666664443

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=97.06  E-value=0.00049  Score=62.40  Aligned_cols=99  Identities=9%  Similarity=-0.104  Sum_probs=62.7

Q ss_pred             ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805          374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP  453 (540)
Q Consensus       374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP  453 (540)
                      -.+.++++.||+.+.+|+|+. .+.+||++|+....    .+.                    |. -...|++||.+++|
T Consensus        44 ~~~~~~~~~pG~~~p~H~H~~-~ee~~VL~G~~~~~----~g~--------------------~~-~~~~~~~Gd~~~~p   97 (145)
T 2o1q_A           44 SWTAIFDCPAGSSFAAHVHVG-PGEYFLTKGKMDVR----GGK--------------------AA-GGDTAIAPGYGYES   97 (145)
T ss_dssp             EEEEEEEECTTEEECCEEESS-CEEEEEEEEEEEET----TCG--------------------GG-TSEEEESSEEEEEC
T ss_pred             cEEEEEEECCCCCCCccCCCC-CEEEEEEEeEEEEc----CCC--------------------Ee-cceEeCCCEEEEEC
Confidence            457889999999999999985 56689999999853    221                    11 01368999999999


Q ss_pred             CCCeEE-EEecCCCCEEEEEEEecCCCCccccccccccccccCCHHHHHHHc
Q 040805          454 AGHPVV-TVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAF  504 (540)
Q Consensus       454 aG~~h~-~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF  504 (540)
                      +|..|. ..+.  ++..++.+.+.   +. .|+....+...-++-.....++
T Consensus        98 ~g~~H~p~~~~--e~~~~l~~~~g---p~-~f~~~~g~~~~~~d~~~~~~~~  143 (145)
T 2o1q_A           98 ANARHDKTEFP--VASEFYMSFLG---PL-TFVKPDGSPIAVIGWEDAQGAW  143 (145)
T ss_dssp             TTCEESCCEEE--EEEEEEEEEES---CE-EEECTTSCEEEEECHHHHHHHH
T ss_pred             cCCccCCeECC--CCeEEEEEECC---cc-eecCCCCCEeEEecHHHHHHhh
Confidence            999998 4333  23433332222   22 3443334454445554444443

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=97.05  E-value=0.18  Score=49.58  Aligned_cols=104  Identities=14%  Similarity=0.129  Sum_probs=67.5

Q ss_pred             ceeecCCceEEEeccCcc---cccccccccccee-eeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEEee
Q 040805          151 SRVTSQHGRVAFLPKFTQ---RSKLLRGLEKYRL-GILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNV  225 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~---~~~~L~Gi~~~rl-~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l  225 (540)
                      .+-..++|.+++...|.-   .+|.+.+...+|+ ....+.||.-+.||=| +-+.|.||++|...-.  +. -.....|
T Consensus         9 ~rg~~~~~~l~~~~~fsf~~~~dP~~~~fg~l~v~n~d~i~pg~gf~~HPHrg~EtvTyvl~G~~~H~--DS-~Gn~~~i   85 (242)
T 1tq5_A            9 ERGHANHGWLDSWHTFSFANYYDPNFMGFSALRVINDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQ--DS-MGNKEQV   85 (242)
T ss_dssp             GSEEEECSSEEEEESSCBTTBCCSSCSCBTTEEEEEEEEECTTCEEEEEEECSCEEEEEEEESEEEEE--ES-SSCEEEE
T ss_pred             HCCCccCCCEEEEEecccccccChhHhcCCceEeeccceeCCCCcCCCcCCCCcEEEEEEEEeEEEEE--eC-CCCcEEE
Confidence            455667777776665542   1233334333332 2345788865566644 5677899999986432  22 2345689


Q ss_pred             CCCcEEEECCC--CeEEEEeCCCCccEEEEEEee
Q 040805          226 KRGDIIRVPSG--NTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       226 ~~GDv~~iPaG--~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      ++|||-+.-||  +.|.-.|..+++++.++-+..
T Consensus        86 ~~GdvQ~MtAG~GI~HsE~~~~~~~~l~~lQlWv  119 (242)
T 1tq5_A           86 PAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIWI  119 (242)
T ss_dssp             ETTCEEEEECTTCEEEEEECCCSSCCEEEEEEEE
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCCCeEEEEEEEE
Confidence            99999999766  789999976556788777663

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=97.04  E-value=0.005  Score=54.98  Aligned_cols=57  Identities=11%  Similarity=0.118  Sum_probs=43.8

Q ss_pred             cccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCC-C
Q 040805          388 APFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQN-N  466 (540)
Q Consensus       388 ~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~-e  466 (540)
                      .||.| +..+|+||++|++.+.+   ++                      +.  ..|++||+++||+|.+|...+.++ +
T Consensus        32 ~p~~h-~~~~i~~v~~G~~~~~i---~~----------------------~~--~~l~~Gd~~~i~p~~~H~~~~~~~~~   83 (164)
T 2arc_A           32 RPLGM-KGYILNLTIRGQGVVKN---QG----------------------RE--FVCRPGDILLFPPGEIHHYGRHPEAR   83 (164)
T ss_dssp             ETTCC-SSEEEEEEEEECEEEEE---TT----------------------EE--EEECTTCEEEECTTCCEEEEECTTSS
T ss_pred             cccCC-CceEEEEEEEeEEEEEE---CC----------------------EE--EEecCCeEEEEcCCCCEEEEeCCCCC
Confidence            58886 67789999999999986   22                      23  379999999999999999877643 4


Q ss_pred             CEEEEE
Q 040805          467 NLEVVC  472 (540)
Q Consensus       467 ~l~~v~  472 (540)
                      +..+..
T Consensus        84 ~~~~~~   89 (164)
T 2arc_A           84 EWYHQW   89 (164)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            455433

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=97.01  E-value=0.0039  Score=60.04  Aligned_cols=80  Identities=13%  Similarity=0.118  Sum_probs=64.1

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEe--cCC-----ceEEeeCCCcEEEECC--CCeEEEEeCCCCc
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIR--ENN-----RESYNVKRGDIIRVPS--GNTFYVTNTDDDE  248 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~--~~~-----~~~~~l~~GDv~~iPa--G~~h~~~N~g~~e  248 (540)
                      .+-+.++...||....+|-|....+++|++|+....+..  +++     ..+..+.+||++++++  |.+|-+.|...++
T Consensus        78 ~~~v~~l~w~PGq~spiHdH~~~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~g~iH~V~N~~~~~  157 (208)
T 2gm6_A           78 RFSIVSFVWGPGQRTPIHDHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDDR  157 (208)
T ss_dssp             SCEEEEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSSS
T ss_pred             CEEEEEEEeCCCcccCcccCCcceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCCCCeEEeccCCCCC
Confidence            345666799999999999887789999999999888754  222     1357899999999999  9999999985466


Q ss_pred             cEEEEEEee
Q 040805          249 KLYIVKFIK  257 (540)
Q Consensus       249 ~l~~v~i~~  257 (540)
                      +.+.|-++-
T Consensus       158 ~avsLHvY~  166 (208)
T 2gm6_A          158 VSISIHVYG  166 (208)
T ss_dssp             CEEEEEEES
T ss_pred             cEEEEEEEc
Confidence            787776663

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=96.95  E-value=0.0026  Score=57.34  Aligned_cols=71  Identities=11%  Similarity=0.115  Sum_probs=52.8

Q ss_pred             CCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEe
Q 040805          383 KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVA  462 (540)
Q Consensus       383 pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n  462 (540)
                      ..++...|-|.+++|+.||++|+.++.+-.....                 ..  .--.-.|++|++++||+|.-|.-.+
T Consensus        38 ~~~i~~~h~H~~tDE~Fivl~G~l~i~~rd~~~~-----------------~~--~d~~V~l~~Ge~yvVPkGveH~p~a   98 (140)
T 3d0j_A           38 IEGIAHLEIHHSTDEQFILSAGKAILITAEKEND-----------------KF--NIELTLMEKGKVYNVPAECWFYSIT   98 (140)
T ss_dssp             TTTCCEEEEESSCCEEEEEEESCEEEEEEEEETT-----------------EE--EEEEEECCTTCCEEECTTCEEEEEE
T ss_pred             cccCHhhccCCCCCeEEEEEecEEEEEEecCcCC-----------------CC--ccceEEecCCCEEEeCCCccCcccC
Confidence            4577788999999999999999999988753110                 00  1112479999999999999999888


Q ss_pred             cCCCCEEEEEEE
Q 040805          463 SQNNNLEVVCFE  474 (540)
Q Consensus       463 ~~~e~l~~v~F~  474 (540)
                      ..  ...++-+.
T Consensus        99 ~~--e~~vLLiE  108 (140)
T 3d0j_A           99 QK--DTKMMYVQ  108 (140)
T ss_dssp             CT--TCEEEEEE
T ss_pred             CC--ceEEEEEE
Confidence            63  45666553

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=96.87  E-value=0.0038  Score=58.00  Aligned_cols=71  Identities=14%  Similarity=0.161  Sum_probs=55.2

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      +..+.++.+.||+.+.+|+|+ ..+.+||++|....+   .++.                         ..+.+||.+++
T Consensus        42 g~~v~lvr~~pG~~~p~H~H~-g~ee~~VL~G~f~~~---~~~~-------------------------~~~~aGd~~~~   92 (165)
T 3cjx_A           42 GLMVMRASFAPGLTLPLHFHT-GTVHMYTISGCWYYT---EYPG-------------------------QKQTAGCYLYE   92 (165)
T ss_dssp             TEEEEEEEECTTCBCCEEEES-SCEEEEEEESEEEET---TCTT-------------------------SCEETTEEEEE
T ss_pred             CcEEEEEEECCCCcCCcccCC-CCEEEEEEEEEEEEC---CCce-------------------------EEECCCeEEEe
Confidence            467889999999999999997 578999999998763   1110                         24789999999


Q ss_pred             CCCCeEEEEecC--CCCEEEEE
Q 040805          453 PAGHPVVTVASQ--NNNLEVVC  472 (540)
Q Consensus       453 PaG~~h~~~n~~--~e~l~~v~  472 (540)
                      |+|..|...+..  ++++..+.
T Consensus        93 P~g~~H~~~a~~~~~~gci~l~  114 (165)
T 3cjx_A           93 PGGSIHQFNTPRDNEGQTEVIF  114 (165)
T ss_dssp             CTTCEECEECCTTCSSCEEEEE
T ss_pred             CCCCceeeEeCCCCCCCcEEEE
Confidence            999999988753  33554433

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=96.84  E-value=0.015  Score=54.45  Aligned_cols=108  Identities=11%  Similarity=0.098  Sum_probs=72.8

Q ss_pred             ceeecCCceEEEeccCccccccccccccceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCC-------ceE
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENN-------RES  222 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~-------~~~  222 (540)
                      .++..+-|.+..+  |..+...+  ....+.-+....||.++-.|+| ...++++|++|+..+.+|+-..       ...
T Consensus        29 ~~~~D~RG~f~e~--~~~~~~~~--~~f~Q~n~s~s~~GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~SpTfg~~~~  104 (174)
T 3ejk_A           29 RQIPAEGGPVLHM--LRLDSPQF--SQFGEIYFSEVLPRRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREKSPTSGRLAQ  104 (174)
T ss_dssp             CEECCTTSCEECC--CCTTCTTC--CCCCEEEEEEECBTCEEEEEEESSCCEEEEEEESEEEEEEECCCTTCTTTTCEEE
T ss_pred             CcEecCCcCEEEE--EecCccCC--CCeeEEEEEECCCCCEECcEecCCCceEEEEEeeEEEEEEEeCCCCCCCCCeEEE
Confidence            4455666777776  33322111  1223444445688989888886 5789999999999999987542       256


Q ss_pred             EeeC---CCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCC
Q 040805          223 YNVK---RGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPG  263 (540)
Q Consensus       223 ~~l~---~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg  263 (540)
                      +.|.   ..-.++||+|+.|-+.|.++ ++++++.+.+...+|.
T Consensus       105 v~Ls~~~n~~~L~IP~G~aHgf~~lsd-~~av~ly~~s~~Y~p~  147 (174)
T 3ejk_A          105 VTLGRPDNYRLLRIPPQVWYGFAATGD-TPALVANCTDIPHRQG  147 (174)
T ss_dssp             EEEETTTBCEEEEECTTCEEEEEECTT-SCEEEEEEESSCCCTT
T ss_pred             EEECCccCceEEEeCCCcEEEEEEccC-CCEEEEEECCCccCCC
Confidence            7776   66799999999999999974 2466655554334443

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=96.82  E-value=0.025  Score=52.95  Aligned_cols=106  Identities=11%  Similarity=-0.028  Sum_probs=70.4

Q ss_pred             cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCc
Q 040805          350 SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSST  429 (540)
Q Consensus       350 ~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~  429 (540)
                      .+...-|.+.++...+...+... .-+......+|.++..|||..-.++++|++|+..+-+++-...             
T Consensus        30 ~~~D~RG~f~e~~~~~~~~~~~f-~Q~n~s~s~~GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~-------------   95 (174)
T 3ejk_A           30 QIPAEGGPVLHMLRLDSPQFSQF-GEIYFSEVLPRRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREK-------------   95 (174)
T ss_dssp             EECCTTSCEECCCCTTCTTCCCC-CEEEEEEECBTCEEEEEEESSCCEEEEEEESEEEEEEECCCTT-------------
T ss_pred             cEecCCcCEEEEEecCccCCCCe-eEEEEEECCCCCEECcEecCCCceEEEEEeeEEEEEEEeCCCC-------------
Confidence            45555666666543332111100 1122233478999999999999999999999999999986431             


Q ss_pred             cccCCccc-eEEeeeeC---CCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805          430 REEGSATY-HKVSSRIR---TDSAYIVPAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       430 ~~~~~~~~-~~~~~~l~---~GDV~vVPaG~~h~~~n~~~e~l~~v~F  473 (540)
                          +.+| +.....|.   ....++||+|++|-+.+.++++.+++.+
T Consensus        96 ----SpTfg~~~~v~Ls~~~n~~~L~IP~G~aHgf~~lsd~~av~ly~  139 (174)
T 3ejk_A           96 ----SPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALVANC  139 (174)
T ss_dssp             ----CTTTTCEEEEEEETTTBCEEEEECTTCEEEEEECTTSCEEEEEE
T ss_pred             ----CCCCCeEEEEEECCccCceEEEeCCCcEEEEEEccCCCEEEEEE
Confidence                1111 22344676   5679999999999999986656666655

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=96.58  E-value=0.35  Score=48.19  Aligned_cols=86  Identities=13%  Similarity=0.165  Sum_probs=55.6

Q ss_pred             cCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEee--CC-----
Q 040805          155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNV--KR-----  227 (540)
Q Consensus       155 ~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l--~~-----  227 (540)
                      +..|.+..+   +   |.-.|+.-+.+.++.|++|....-.--+-+-.++.+.|+++|.+    ...++.+  .+     
T Consensus        11 ~~~g~~~~i---t---p~~a~~~y~~f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~----~g~~~~~~g~R~svF~   80 (270)
T 2qjv_A           11 SESGNIQHI---S---PQNAGWEYVGFDVWQLXAGESITLPSDERERCLVLVAGLASVXA----ADSFFYRIGQRMSPFE   80 (270)
T ss_dssp             CSSEEEEEE---C---HHHHTSSSCEEEEEEECTTCEEEECCSSEEEEEEEEESCEEEEE----TTEEEEEECCCSSGGG
T ss_pred             cCCCCEEEe---C---CCCCCcEEeEEEEEEecCCCEEEecCCCcEEEEEEecceEEEEE----CCEEEecccccccccc
Confidence            456665554   2   22235555667777889998643333345555778899998887    3455544  22     


Q ss_pred             ---CcEEEECCCCeEEEEeCCCCccEEEE
Q 040805          228 ---GDIIRVPSGNTFYVTNTDDDEKLYIV  253 (540)
Q Consensus       228 ---GDv~~iPaG~~h~~~N~g~~e~l~~v  253 (540)
                         .|.++||.|...-+...+   +++|.
T Consensus        81 ~~~p~~lYvp~g~~v~i~a~~---~~~~~  106 (270)
T 2qjv_A           81 RIPAYSVYLPHHTEAXVTAET---DLELA  106 (270)
T ss_dssp             CSCCCEEEECSSCCEEEEESS---SEEEE
T ss_pred             CCCCcEEEECCCCEEEEEecC---CceEE
Confidence               599999999987787764   35544

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=96.55  E-value=0.0049  Score=60.53  Aligned_cols=58  Identities=16%  Similarity=0.207  Sum_probs=45.8

Q ss_pred             eeCCCc--cccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeC
Q 040805          185 IANPQT--FVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNT  244 (540)
Q Consensus       185 ~l~Pgg--l~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~  244 (540)
                      .++...  .+.+|||+.-+|+||++|++.  .++..+...+.+.+||+++||+|.+|.+...
T Consensus        13 ~~~~~~~~~~~~~~~~~~~i~~v~~G~~~--~i~~~~~~~~~l~~g~l~~i~p~~~h~~~~~   72 (276)
T 3gbg_A           13 RMSKFDTYIFNNLYINDYKMFWIDSGIAK--LIDKNCLVSYEINSSSIILLKKNSIQRFSLT   72 (276)
T ss_dssp             EECTTCEEEEEEEECSSCEEEEESSSCEE--EEETTTTEEEEECTTEEEEECTTCEEEEEEE
T ss_pred             hhhcccchhccHhhhcceEEEEEecCceE--EECCccceeEEEcCCCEEEEcCCCceeeccc
Confidence            445543  247888999999999999998  4443333389999999999999999998765

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=96.52  E-value=0.034  Score=51.88  Aligned_cols=81  Identities=14%  Similarity=0.085  Sum_probs=63.4

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      ++.+..+...||.-..+|=|.++..+++|++|+...++....+..                 .. ..-...|.+||++++
T Consensus        68 ~~~v~~l~W~PGq~S~iHdH~~s~~~~~VL~G~l~e~~y~~~~~~-----------------~~-~~~~~~l~~G~~~~~  129 (171)
T 3eqe_A           68 ELEIIVINIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEH-----------------AE-LSNSYFVHEGECLIS  129 (171)
T ss_dssp             SCEEEEEEECTTCBCCEECCTTCEEEEEEEESEEEEEEEEECSSS-----------------EE-EEEEEEEETTCEEEE
T ss_pred             CeEEEEEEECCCCCcccccCCCceEEEEEEeeeEEEEEeecCCCc-----------------ee-ecceEEeCCCcEEEe
Confidence            467888999999999999999999999999999998877643210                 00 112346899999999


Q ss_pred             CCCCeEEEEecCCCCEEEE
Q 040805          453 PAGHPVVTVASQNNNLEVV  471 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v  471 (540)
                      |.+.+|.+.|.++++.+-|
T Consensus       130 ~~~~iH~V~N~~~~~aVSl  148 (171)
T 3eqe_A          130 TKGLIHKMSNPTSERMVSL  148 (171)
T ss_dssp             CTTCEEEEECCSSSCEEEE
T ss_pred             CCCCEEEEECCCCCCEEEE
Confidence            9999999999877655433

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=96.48  E-value=0.0044  Score=56.96  Aligned_cols=60  Identities=10%  Similarity=-0.002  Sum_probs=47.8

Q ss_pred             eeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCc--eEEeeCCCcEEEECCCCeEEEEe
Q 040805          180 RLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNR--ESYNVKRGDIIRVPSGNTFYVTN  243 (540)
Q Consensus       180 rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~--~~~~l~~GDv~~iPaG~~h~~~N  243 (540)
                      -..++.+.||+.+.+|+|...+.+|||+|+...+    .+.  ..-.+++|+.++-|+|..|+..-
T Consensus        47 ~t~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~----~Gd~~~~~~~~aGsYv~ePpGs~H~p~~  108 (153)
T 3bal_A           47 WTAIFNCPAGSSFASHIHAGPGEYFLTKGKMEVR----GGEQEGGSTAYAPSYGFESSGALHGKTF  108 (153)
T ss_dssp             EEEEEEECTTEEECCEEESSCEEEEEEESEEEET----TCGGGTSEEEESSEEEEECTTCEESCCE
T ss_pred             EEEEEEeCCCCCccCccCCCCEEEEEEEEEEEec----CccccCccccCCCeEEEcCCCCccccee
Confidence            3445589999999999999999999999976443    332  23567899999999999998533

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=96.46  E-value=0.013  Score=54.71  Aligned_cols=61  Identities=10%  Similarity=0.098  Sum_probs=45.2

Q ss_pred             CCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEe
Q 040805          383 KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVA  462 (540)
Q Consensus       383 pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n  462 (540)
                      ||.-+.=| |....++.||++|+..+.+.+.+...                 .  +..+..|++||+|++|+|.+|.-.+
T Consensus        43 Pn~r~D~H-~~~~eE~Fy~lkG~m~l~v~d~g~~~-----------------~--~~~dv~i~eGdmfllP~gvpHsP~r  102 (176)
T 1zvf_A           43 PNERTDYH-INPTPEWFYQKKGSMLLKVVDETDAE-----------------P--KFIDIIINEGDSYLLPGNVPHSPVR  102 (176)
T ss_dssp             SBCCSCEE-ECSSCEEEEEEESCEEEEEEECSSSS-----------------C--EEEEEEECTTEEEEECTTCCEEEEE
T ss_pred             CCcCCcCc-CCCCceEEEEEeCEEEEEEEcCCCcc-----------------c--ceeeEEECCCCEEEcCCCCCcCCcc
Confidence            44545556 44678899999999999999843110                 0  1223589999999999999999877


Q ss_pred             c
Q 040805          463 S  463 (540)
Q Consensus       463 ~  463 (540)
                      .
T Consensus       103 ~  103 (176)
T 1zvf_A          103 F  103 (176)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=96.42  E-value=0.052  Score=50.59  Aligned_cols=134  Identities=13%  Similarity=0.091  Sum_probs=85.1

Q ss_pred             CCceEEEecCCCCC-CCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceE-EEEEEcCCCCCCcccccccCCCccc
Q 040805          354 NFGELFEADSNDFR-PLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDG-YIEIACPHVSRSSSERRHQGSSTRE  431 (540)
Q Consensus       354 ~~G~~~~~~~~~~p-~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g-~v~vv~p~~~~~~~~~~~~~~~~~~  431 (540)
                      ++|++++.....-+ .-.....++.+.-|.+|.....|-+ +|+||-|...|.+ .+.++.|++..              
T Consensus        28 EGG~yret~rs~~~~~~~R~~~T~IYfLL~~g~~S~~HRv-~sdEiW~~~~G~pL~l~l~~~dg~~--------------   92 (170)
T 1yud_A           28 EGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRL-TADEMWYFHAGQSLTIYMISPEGEL--------------   92 (170)
T ss_dssp             TSSEEEEEEECSSBSSSSSBSCEEEEEEEETTCCEEEEEC-SSCEEEEEEEESCEEEEEECTTSCE--------------
T ss_pred             CCceEEEeecCCCCCCCCCccceEEEEEECCCCCCeeEEc-CCCEEEEEEcCCCEEEEEEcCCCCE--------------
Confidence            66666655543200 1112246788888999999888885 7999999999986 88899997631              


Q ss_pred             cCCccceEEeeeeCCCcE--EEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCCHHHHHHHcCCCHH
Q 040805          432 EGSATYHKVSSRIRTDSA--YIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRAD  509 (540)
Q Consensus       432 ~~~~~~~~~~~~l~~GDV--~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e  509 (540)
                          .-.++-.++..|++  +|||+|+.....+... +..+|+=-+.   |...| +    -|.-++++.|.+.|.--.+
T Consensus        93 ----~~~~LG~dv~~Ge~pQ~vVP~G~wqaa~~~~g-~~~LV~C~Va---PGF~f-~----dfel~~~~~L~~~~P~~~~  159 (170)
T 1yud_A           93 ----TTAQLGLDLAAGERPQFLVPKGCIFGSAMNQD-GFSLVGCMVS---PGFTF-D----DFELFSQEALLAMYPQHKA  159 (170)
T ss_dssp             ----EEEEESSCTTTTEESCEEECTTCEEEEEESSS-SEEEEEEEES---SCCCG-G----GCCBCBHHHHHHSCCTTHH
T ss_pred             ----EEEEeCCCcccCceeEEEECCCCEEEEEECCC-CcEEEEEEEC---CCccC-C----ceEEcCHHHHHhHCchhHH
Confidence                00234456889999  9999999999876622 4444332222   22211 1    1111256666677776666


Q ss_pred             HHHHhh
Q 040805          510 EVERVF  515 (540)
Q Consensus       510 ~v~kl~  515 (540)
                      .|++|-
T Consensus       160 ~I~~lt  165 (170)
T 1yud_A          160 VVQKLS  165 (170)
T ss_dssp             HHTTSC
T ss_pred             HHHHhh
Confidence            666664

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=96.23  E-value=0.031  Score=53.42  Aligned_cols=80  Identities=13%  Similarity=0.085  Sum_probs=62.3

Q ss_pred             cceeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEe-cCC-------ceEEeeCCCcEEEE-CCCCeEEEEeCCCC
Q 040805          178 KYRLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIR-ENN-------RESYNVKRGDIIRV-PSGNTFYVTNTDDD  247 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~-~~~-------~~~~~l~~GDv~~i-PaG~~h~~~N~g~~  247 (540)
                      .+.+.++...||....+|=|. +-.+++|++|..+..+.. ++.       ..+..+.+|||.++ |++.+|.+.|.+.+
T Consensus        69 ~~~l~ll~W~PGq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~~~giH~V~N~s~~  148 (200)
T 3eln_A           69 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHT  148 (200)
T ss_dssp             TCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSS
T ss_pred             ceEEEEEEECCCCcCCCccCCCceEEEEEEeeeEEEEEeecCCCCcccccccceEEeCCCCEEEecCCCcEEEEECCCCC
Confidence            456667799999998888664 889999999999888765 221       12578999999999 88889999998755


Q ss_pred             ccEEEEEEee
Q 040805          248 EKLYIVKFIK  257 (540)
Q Consensus       248 e~l~~v~i~~  257 (540)
                      ++.+-|=++-
T Consensus       149 ~~avSlHvY~  158 (200)
T 3eln_A          149 EPAVSLHLYS  158 (200)
T ss_dssp             CCEEEEEEEE
T ss_pred             CCEEEEEeCC
Confidence            6666665553

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=96.14  E-value=0.035  Score=56.78  Aligned_cols=59  Identities=20%  Similarity=0.329  Sum_probs=39.7

Q ss_pred             ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805          374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP  453 (540)
Q Consensus       374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP  453 (540)
                      .++.++++..+.-.   -...+..|+.|++|+|.+..   ++                      ..  ..|++||.|+||
T Consensus       251 F~~~~~~~~~~~~~---~~~~~~~il~v~~G~~~l~~---~~----------------------~~--~~l~~G~~~~vp  300 (319)
T 1qwr_A          251 FSVYKWDINGEAEM---AQDESFLICSVIEGSGLLKY---ED----------------------KT--CPLKKGDHFILP  300 (319)
T ss_dssp             CEEEEEEEEEEEEE---CCCSSCEEEEEEEEEEEEEE---TT----------------------EE--EEEETTCEEEEC
T ss_pred             EEEEEEEECCceEE---ccCCccEEEEEEcCeEEEEE---CC----------------------EE--EEEcCCcEEEEe
Confidence            55666666644221   12357789999999999864   22                      22  369999999999


Q ss_pred             CCCeEEEEe
Q 040805          454 AGHPVVTVA  462 (540)
Q Consensus       454 aG~~h~~~n  462 (540)
                      ++..-+.+.
T Consensus       301 a~~~~~~i~  309 (319)
T 1qwr_A          301 AQMPDFTIK  309 (319)
T ss_dssp             TTCCCEEEE
T ss_pred             CCCceEEEE
Confidence            987544443

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=96.13  E-value=0.084  Score=47.69  Aligned_cols=99  Identities=6%  Similarity=0.028  Sum_probs=69.0

Q ss_pred             ceeecCCceEEEeccCccccccccccccceeeeee-eCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCC
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILI-ANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRG  228 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~-l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~G  228 (540)
                      ..+..+-|.+.++.+++.    ++ ...-|+.++. +.||...-+|.| ...+++++++|+..+.+-+.....++.|...
T Consensus        11 ~~i~D~RG~L~~~e~~~~----ip-f~ikRvy~~~~~~~g~~RG~H~Hk~~~q~li~l~Gs~~v~ldDg~~~~~~~L~~~   85 (141)
T 2pa7_A           11 KKIIDSRGSLVAIEENKN----IP-FSIKRVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSP   85 (141)
T ss_dssp             CEEEETTEEEEEEETTTT----SS-SCCCEEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCT
T ss_pred             CcEecCCCcEEEEeccCC----CC-CCccEEEEEEecCCCCEECcCcCCCceEEEEEEccEEEEEEECCcEEEEEEECCC
Confidence            456678899999876432    22 1234555444 348888888855 6889999999999888843334456777555


Q ss_pred             c-EEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          229 D-IIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       229 D-v~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      + .+.||+|+-|-+.|-++  ..+++.+.
T Consensus        86 ~~gL~IppgvWh~~~~~s~--~avllvla  112 (141)
T 2pa7_A           86 AVGLYVGPAVWHEMHDFSS--DCVMMVLA  112 (141)
T ss_dssp             TEEEEECTTCEEEEECCCT--TCEEEEEE
T ss_pred             CcEEEeCCCEEEEEEEcCC--CeEEEEEC
Confidence            5 49999999999999874  35555444

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=96.09  E-value=0.018  Score=57.61  Aligned_cols=58  Identities=14%  Similarity=0.133  Sum_probs=45.6

Q ss_pred             CCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEe
Q 040805          383 KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVA  462 (540)
Q Consensus       383 pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n  462 (540)
                      ||.-..=| |....|+.|+++|...+.++..+                       +..+-.|++|++|++|+|.+|.=.+
T Consensus        40 pN~R~d~H-~~~~dE~FyqlkG~m~l~~~d~g-----------------------~~~~V~i~eGemfllP~gv~HsP~r   95 (286)
T 2qnk_A           40 PNTRKDYH-IEEGEEVFYQLEGDMVLRVLEQG-----------------------KHRDVVIRQGEIFLLPARVPHSPQR   95 (286)
T ss_dssp             CBCCCCEE-ECSSCEEEEEEESCEEEEEEETT-----------------------EEEEEEECTTEEEEECTTCCEEEEE
T ss_pred             CCcCccCc-CCCCCeEEEEEeCeEEEEEEeCC-----------------------ceeeEEECCCeEEEeCCCCCcCCcc
Confidence            33335557 67788999999999999999852                       1223479999999999999998777


Q ss_pred             cC
Q 040805          463 SQ  464 (540)
Q Consensus       463 ~~  464 (540)
                      ..
T Consensus        96 ~~   97 (286)
T 2qnk_A           96 FA   97 (286)
T ss_dssp             CT
T ss_pred             cC
Confidence            53

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=96.07  E-value=0.013  Score=55.70  Aligned_cols=61  Identities=23%  Similarity=0.334  Sum_probs=47.2

Q ss_pred             eeCCCccccccccC-CCeEEEEEeeEEEEEEEecCCc-----------------------------------eEEeeCCC
Q 040805          185 IANPQTFVTPTHLD-ADAVFFVSWGQGTITVIRENNR-----------------------------------ESYNVKRG  228 (540)
Q Consensus       185 ~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~~-----------------------------------~~~~l~~G  228 (540)
                      -|-|.|...|+|.| .+-++.++.|+=++.++.|...                                   .+..|++|
T Consensus       129 wiG~~gs~t~~H~D~~~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~pG  208 (235)
T 4gjz_A          129 WFGPQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPG  208 (235)
T ss_dssp             EEECTTCEEEEECCSSEEEEEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEEECTT
T ss_pred             EEeCCCCCceeeeccccceEEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEEECCC
Confidence            44565555565554 5678889999999999877421                                   13589999


Q ss_pred             cEEEECCCCeEEEEeCC
Q 040805          229 DIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       229 Dv~~iPaG~~h~~~N~g  245 (540)
                      |+++||+|..|++.|.+
T Consensus       209 D~LyiP~gW~H~V~~l~  225 (235)
T 4gjz_A          209 EILFIPVKYWHYVRALD  225 (235)
T ss_dssp             CEEEECTTCEEEEEESS
T ss_pred             CEEEeCCCCcEEEEECC
Confidence            99999999999999986

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=96.01  E-value=0.038  Score=48.37  Aligned_cols=70  Identities=16%  Similarity=0.100  Sum_probs=48.9

Q ss_pred             ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805          374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP  453 (540)
Q Consensus       374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP  453 (540)
                      +.+..=..+||.....+.  ..+|+.||++|++.++.-  ++.                      .  ..|++||+++||
T Consensus        42 ~~~GvWe~tPG~~~~~~~--~~~E~~~iLeG~~~lt~d--dG~----------------------~--~~l~aGD~~~~P   93 (116)
T 3es4_A           42 TIVAVWMAEPGIYNYAGR--DLEETFVVVEGEALYSQA--DAD----------------------P--VKIGPGSIVSIA   93 (116)
T ss_dssp             CEEEEEEECSEEEEECCC--SEEEEEEEEECCEEEEET--TCC----------------------C--EEECTTEEEEEC
T ss_pred             EEEEEEecCCceeECeeC--CCcEEEEEEEeEEEEEeC--CCe----------------------E--EEECCCCEEEEC
Confidence            445555889998775442  234999999999999742  231                      1  369999999999


Q ss_pred             CCCeEEEEecCCCCEEEEEE
Q 040805          454 AGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       454 aG~~h~~~n~~~e~l~~v~F  473 (540)
                      +|+.-.+.-.  +.+.=+.|
T Consensus        94 ~G~~gtWev~--e~vrK~~~  111 (116)
T 3es4_A           94 KGVPSRLEIL--SSFRKLAT  111 (116)
T ss_dssp             TTCCEEEEEC--SCEEEEEE
T ss_pred             CCCeEEEEEe--EEEeEEEE
Confidence            9998876543  34554443

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=95.93  E-value=0.015  Score=56.22  Aligned_cols=79  Identities=9%  Similarity=0.111  Sum_probs=62.1

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEe--cCCc-----eEEeeCCCcEEEECCC--CeEEEEeCCCCc
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIR--ENNR-----ESYNVKRGDIIRVPSG--NTFYVTNTDDDE  248 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~--~~~~-----~~~~l~~GDv~~iPaG--~~h~~~N~g~~e  248 (540)
                      .+-|.++...||....+|=|.+..++.|++|..+..+..  +++.     .+..+.+||+++++++  .+|-+.|..+++
T Consensus        72 ~f~v~~l~W~PGq~spiHDH~swg~~~Vl~G~l~e~~y~~~~~g~~~~~~~~~~l~~G~v~~~~p~~g~IH~V~N~~~d~  151 (211)
T 3uss_A           72 RFSVVSFVWGPGQITPVHDHRVWGLIGMLRGAEYSQPYAFDAGGRPHPSGARRRLEPGEVEALSPRIGDVHQVSNAFSDR  151 (211)
T ss_dssp             SCEEEEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSSS
T ss_pred             CEEEEEEEECCCCcCCCCCCCeeEEEEeeeceEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCCEEEEccCCCCC
Confidence            455667799999998888777899999999999887754  2222     2478999999999987  899999986456


Q ss_pred             cEEEEEEe
Q 040805          249 KLYIVKFI  256 (540)
Q Consensus       249 ~l~~v~i~  256 (540)
                      +.+-|=++
T Consensus       152 ~avSLHvY  159 (211)
T 3uss_A          152 TSISIHVY  159 (211)
T ss_dssp             CEEEEEEE
T ss_pred             CEEEEEEc
Confidence            66666565

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=95.90  E-value=0.44  Score=50.74  Aligned_cols=65  Identities=18%  Similarity=0.323  Sum_probs=42.4

Q ss_pred             cceEEEEEEc--CCC-cccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcE
Q 040805          373 DITVSYANIS--KGA-MAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSA  449 (540)
Q Consensus       373 ~isv~~~~L~--pgg-m~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV  449 (540)
                      ..++.++++.  +++ ...+  ......|++|++|+|.+..   ++..                    .. ...|++||+
T Consensus       356 eF~v~~~~~~~~~~~~~~~~--~~~~~~illv~~G~g~i~~---~~~~--------------------~~-~~~l~~G~~  409 (440)
T 1pmi_A          356 EFSVLQTIFDKSKGGKQVIE--GLNGPSIVIATNGKGTIQI---TGDD--------------------ST-KQKIDTGYV  409 (440)
T ss_dssp             SCEEEEEECCTTTCCEEEEC--CCSSCEEEEEEESEEEEEE---TTCG--------------------GG-CEEEETTCE
T ss_pred             eEEEEEEEecCCCCceeEEe--cCCCcEEEEEEeCeEEEEe---CCcc--------------------cc-eEEeccCCE
Confidence            3667778877  342 2222  2357789999999999874   1100                    00 026899999


Q ss_pred             EEECCCCeEEEEec
Q 040805          450 YIVPAGHPVVTVAS  463 (540)
Q Consensus       450 ~vVPaG~~h~~~n~  463 (540)
                      |+||++....+.+.
T Consensus       410 ~fvpa~~~~~i~g~  423 (440)
T 1pmi_A          410 FFVAPGSSIELTAD  423 (440)
T ss_dssp             EEECTTCCEEEEEC
T ss_pred             EEEeCCCcEEEEEe
Confidence            99999966555553

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=95.89  E-value=0.15  Score=46.04  Aligned_cols=99  Identities=8%  Similarity=0.029  Sum_probs=66.7

Q ss_pred             CcccCCCceEEEecC-CCCCCCccccceEEEEE-EcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccC
Q 040805          349 PSHSNNFGELFEADS-NDFRPLEDLDITVSYAN-ISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQG  426 (540)
Q Consensus       349 P~~~n~~G~~~~~~~-~~~p~L~~l~isv~~~~-L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~  426 (540)
                      |.+...-|.+..+.. .+.|- .  --.+.++. ..||..+.+|.|...++++++++|+..+.+-+....          
T Consensus        11 ~~i~D~RG~L~~~e~~~~ipf-~--ikRvy~~~~~~~g~~RG~H~Hk~~~q~li~l~Gs~~v~ldDg~~~----------   77 (141)
T 2pa7_A           11 KKIIDSRGSLVAIEENKNIPF-S--IKRVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNII----------   77 (141)
T ss_dssp             CEEEETTEEEEEEETTTTSSS-C--CCEEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCE----------
T ss_pred             CcEecCCCcEEEEeccCCCCC-C--ccEEEEEEecCCCCEECcCcCCCceEEEEEEccEEEEEEECCcEE----------
Confidence            445667888888876 33333 1  01233333 348889999999999999999999999888332110          


Q ss_pred             CCccccCCccceEEeeeeC-CCcEEEECCCCeEEEEecCCCCEEEEEEE
Q 040805          427 SSTREEGSATYHKVSSRIR-TDSAYIVPAGHPVVTVASQNNNLEVVCFE  474 (540)
Q Consensus       427 ~~~~~~~~~~~~~~~~~l~-~GDV~vVPaG~~h~~~n~~~e~l~~v~F~  474 (540)
                                 +.+  .|. +-..+.||+|..|.+.+.++ +.+++.+.
T Consensus        78 -----------~~~--~L~~~~~gL~IppgvWh~~~~~s~-~avllvla  112 (141)
T 2pa7_A           78 -----------QEI--TLDSPAVGLYVGPAVWHEMHDFSS-DCVMMVLA  112 (141)
T ss_dssp             -----------EEE--EECCTTEEEEECTTCEEEEECCCT-TCEEEEEE
T ss_pred             -----------EEE--EECCCCcEEEeCCCEEEEEEEcCC-CeEEEEEC
Confidence                       222  343 33469999999999999755 46666663

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=95.83  E-value=0.061  Score=51.66  Aligned_cols=82  Identities=9%  Similarity=0.003  Sum_probs=60.1

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      .+.+..+...||.-..+|-|.. ..+++|++|+...++......       +.    .....   +  ...|.+|++++|
T Consensus        78 ~~~v~~l~w~PGq~spiHdH~~-~~~~~VL~G~l~e~~y~~~~~-------g~----~l~~~---~--~~~l~~G~v~~~  140 (208)
T 2gm6_A           78 RFSIVSFVWGPGQRTPIHDHTV-WGLIGMLRGAEYSQPFVLDGS-------GR----PVLHG---E--PTRLEPGHVEAV  140 (208)
T ss_dssp             SCEEEEEEECTTCBCCSBCCSS-CEEEEEEESCEEEEEEEECTT-------SC----EEECS---C--CEEECTTCEEEE
T ss_pred             CEEEEEEEeCCCcccCcccCCc-ceEEEEecccEEEEEeecCCC-------Cc----ccccc---c--eEEeCCCCEEEE
Confidence            4778889999999999999986 899999999999988652210       00    00000   0  246999999999


Q ss_pred             CC--CCeEEEEec-CCCCEEEE
Q 040805          453 PA--GHPVVTVAS-QNNNLEVV  471 (540)
Q Consensus       453 Pa--G~~h~~~n~-~~e~l~~v  471 (540)
                      +.  |.+|-+.|. +++....|
T Consensus       141 ~~~~g~iH~V~N~~~~~~avsL  162 (208)
T 2gm6_A          141 SPTVGDIHRVHNAYDDRVSISI  162 (208)
T ss_dssp             BTTTBCCEEEEESCSSSCEEEE
T ss_pred             CCCCCCeEEeccCCCCCcEEEE
Confidence            99  999998875 56655444

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=95.80  E-value=0.024  Score=51.98  Aligned_cols=65  Identities=11%  Similarity=-0.051  Sum_probs=50.9

Q ss_pred             ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      .|..+.++++.||+.+.+|||+ ..+.+||++|....+    .+.                    |.. ...+.+|+.++
T Consensus        44 ~g~~t~lvr~~pG~~~p~H~H~-g~ee~~VL~G~~~~~----~Gd--------------------~~~-~~~~~aGsYv~   97 (153)
T 3bal_A           44 TSSWTAIFNCPAGSSFASHIHA-GPGEYFLTKGKMEVR----GGE--------------------QEG-GSTAYAPSYGF   97 (153)
T ss_dssp             TTEEEEEEEECTTEEECCEEES-SCEEEEEEESEEEET----TCG--------------------GGT-SEEEESSEEEE
T ss_pred             cceEEEEEEeCCCCCccCccCC-CCEEEEEEEEEEEec----Ccc--------------------ccC-ccccCCCeEEE
Confidence            3677889999999999999997 667899999998764    110                    000 24578999999


Q ss_pred             ECCCCeEEEEe
Q 040805          452 VPAGHPVVTVA  462 (540)
Q Consensus       452 VPaG~~h~~~n  462 (540)
                      -|+|..|+...
T Consensus        98 ePpGs~H~p~~  108 (153)
T 3bal_A           98 ESSGALHGKTF  108 (153)
T ss_dssp             ECTTCEESCCE
T ss_pred             cCCCCccccee
Confidence            99999998543

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=95.74  E-value=0.023  Score=55.23  Aligned_cols=58  Identities=12%  Similarity=0.041  Sum_probs=48.3

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      +..+.++.+.||+.+.+|.|+ ..+.+||++|...    +..                           ..+.+||.++.
T Consensus        42 g~~~~lvr~~pG~~~p~H~H~-g~Ee~~VL~G~f~----d~~---------------------------~~~~~Gd~~~~   89 (223)
T 3o14_A           42 ARATSIVRYAPGSRFSAHTHD-GGEEFIVLDGVFQ----DEH---------------------------GDYPAGTYVRN   89 (223)
T ss_dssp             CEEEEEEEECTTEECCCEECT-TCEEEEEEEEEEE----ETT---------------------------EEEETTEEEEE
T ss_pred             ccEEEEEEECCCCCcccccCC-CCEEEEEEEeEEE----ECC---------------------------eEECCCeEEEe
Confidence            446788999999999999985 6799999999964    211                           25889999999


Q ss_pred             CCCCeEEEEe
Q 040805          453 PAGHPVVTVA  462 (540)
Q Consensus       453 PaG~~h~~~n  462 (540)
                      |+|..|...+
T Consensus        90 P~g~~H~p~a   99 (223)
T 3o14_A           90 PPTTSHVPGS   99 (223)
T ss_dssp             CTTCEECCEE
T ss_pred             CCCCccccEe
Confidence            9999998776

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=95.42  E-value=0.057  Score=55.67  Aligned_cols=62  Identities=18%  Similarity=0.169  Sum_probs=47.9

Q ss_pred             eeeCC-CccccccccCCCeEEEEEeeEEEEEEE-ecCC----------------------------------ceEEeeCC
Q 040805          184 LIANP-QTFVTPTHLDADAVFFVSWGQGTITVI-RENN----------------------------------RESYNVKR  227 (540)
Q Consensus       184 ~~l~P-ggl~~Ph~~~A~ei~yV~~G~g~ig~V-~~~~----------------------------------~~~~~l~~  227 (540)
                      +-+.| |+.+.|||-..+-++..+.|+=++.+. .|..                                  .....|++
T Consensus       145 ~~~gp~g~~~~~H~D~~dnfl~Qv~G~Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~L~p  224 (342)
T 1vrb_A          145 VYAAKNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTP  224 (342)
T ss_dssp             EEEECSSCCCCSEECSSEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECT
T ss_pred             EEEeCCCCCCCCeECChhcEEEEEEEEEEEEEecCCccccccCcccccccccccccccccchhhccccccCCceEEEECC
Confidence            45556 667777775566777888899888888 4431                                  13468999


Q ss_pred             CcEEEECCCCeEEEEeCC
Q 040805          228 GDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       228 GDv~~iPaG~~h~~~N~g  245 (540)
                      ||+++||+|..|++.+.+
T Consensus       225 GD~LyiP~gwwH~v~s~~  242 (342)
T 1vrb_A          225 GTMLYLPRGLWHSTKSDQ  242 (342)
T ss_dssp             TCEEEECTTCEEEEECSS
T ss_pred             CcEEEeCCCccEEEEECC
Confidence            999999999999999984

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=95.41  E-value=0.26  Score=51.72  Aligned_cols=59  Identities=12%  Similarity=0.202  Sum_probs=40.6

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      ..++.++++.++..   ++..++..|+.|++|++.+..  . +                      ..  ..|++||+++|
T Consensus       323 ~F~v~~~~l~~~~~---~~~~~~~~il~v~~G~~~l~~--~-~----------------------~~--~~l~~G~~~fv  372 (394)
T 2wfp_A          323 DFAFSLHDLALQET---SIGQHSAAILFCVEGEAVLRK--D-E----------------------QR--LVLKPGESAFI  372 (394)
T ss_dssp             SCEEEEEECCSSCE---EECCSSCEEEEEEEEEEEEEE--T-T----------------------EE--EEECTTCEEEE
T ss_pred             EEEEEEEEEcCCeE---EecCCCcEEEEEEeceEEEEE--C-C----------------------eE--EEEccCcEEEE
Confidence            35677777775532   234467789999999998753  2 1                      12  36999999999


Q ss_pred             CCCCeEEEE
Q 040805          453 PAGHPVVTV  461 (540)
Q Consensus       453 PaG~~h~~~  461 (540)
                      |++..-+.+
T Consensus       373 pa~~~~~~i  381 (394)
T 2wfp_A          373 GADESPVNA  381 (394)
T ss_dssp             CGGGCCEEE
T ss_pred             eCCCceEEE
Confidence            998644433

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=95.10  E-value=0.089  Score=49.86  Aligned_cols=87  Identities=15%  Similarity=0.104  Sum_probs=51.5

Q ss_pred             EEEEEcCCCc-ccccccCCCcEEEEEEeceEEEEEEcCCCCCC----cccccc-cCC-----Cc-ccc-CCccceEEeee
Q 040805          377 SYANISKGAM-AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRS----SSERRH-QGS-----ST-REE-GSATYHKVSSR  443 (540)
Q Consensus       377 ~~~~L~pggm-~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~----~~~~~~-~~~-----~~-~~~-~~~~~~~~~~~  443 (540)
                      ..+-|.++|- ..+|+.+. +-+..++.|+=++.++.|.....    ...... .+.     .. ++. .-...+.+...
T Consensus       126 ~~~wiG~~gs~t~~H~D~~-~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~  204 (235)
T 4gjz_A          126 INAWFGPQGTISPLHQDPQ-QNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCI  204 (235)
T ss_dssp             EEEEEECTTCEEEEECCSS-EEEEEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEE
T ss_pred             eEEEEeCCCCCceeeeccc-cceEEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEE
Confidence            3445555554 45577654 56888999999999998853200    000000 000     00 000 00001335567


Q ss_pred             eCCCcEEEECCCCeEEEEecC
Q 040805          444 IRTDSAYIVPAGHPVVTVASQ  464 (540)
Q Consensus       444 l~~GDV~vVPaG~~h~~~n~~  464 (540)
                      |++||+++||+|+.|...|.+
T Consensus       205 l~pGD~LyiP~gW~H~V~~l~  225 (235)
T 4gjz_A          205 LSPGEILFIPVKYWHYVRALD  225 (235)
T ss_dssp             ECTTCEEEECTTCEEEEEESS
T ss_pred             ECCCCEEEeCCCCcEEEEECC
Confidence            999999999999999998874

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=95.10  E-value=0.056  Score=52.82  Aligned_cols=64  Identities=11%  Similarity=0.009  Sum_probs=46.5

Q ss_pred             ceEEEEEEcCCCc--ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          374 ITVSYANISKGAM--AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       374 isv~~~~L~pggm--~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      .-+....|.....  +.+||| +.-+|+||++|.+.  .++..+.                     ..  ..|.+||+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~G~~~--~i~~~~~---------------------~~--~~l~~g~l~~   60 (276)
T 3gbg_A            7 FQTNVYRMSKFDTYIFNNLYI-NDYKMFWIDSGIAK--LIDKNCL---------------------VS--YEINSSSIIL   60 (276)
T ss_dssp             EEEEEEEECTTCEEEEEEEEC-SSCEEEEESSSCEE--EEETTTT---------------------EE--EEECTTEEEE
T ss_pred             hhhhhhhhhcccchhccHhhh-cceEEEEEecCceE--EECCccc---------------------ee--EEEcCCCEEE
Confidence            3345555565554  478996 88899999999999  4443210                     02  3799999999


Q ss_pred             ECCCCeEEEEec
Q 040805          452 VPAGHPVVTVAS  463 (540)
Q Consensus       452 VPaG~~h~~~n~  463 (540)
                      ||+|.+|.+...
T Consensus        61 i~p~~~h~~~~~   72 (276)
T 3gbg_A           61 LKKNSIQRFSLT   72 (276)
T ss_dssp             ECTTCEEEEEEE
T ss_pred             EcCCCceeeccc
Confidence            999999987654

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=94.98  E-value=0.11  Score=53.51  Aligned_cols=93  Identities=14%  Similarity=0.129  Sum_probs=56.1

Q ss_pred             EEEcC-CCcccccccCCCcEEEEEEeceEEEEEE-cCCCC--CCc-c-ccc-c------c-CCCc-cccCCccceEEeee
Q 040805          379 ANISK-GAMAAPFYNSRSTKVAVVVAGDGYIEIA-CPHVS--RSS-S-ERR-H------Q-GSST-REEGSATYHKVSSR  443 (540)
Q Consensus       379 ~~L~p-ggm~~PH~h~~A~ei~yV~~G~g~v~vv-~p~~~--~~~-~-~~~-~------~-~~~~-~~~~~~~~~~~~~~  443 (540)
                      +-+.| |+-..|||.+ .+-++..+.|+=++.+. .|...  ... . ... .      . -.++ .+....  ..+...
T Consensus       145 ~~~gp~g~~~~~H~D~-~dnfl~Qv~G~Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~  221 (342)
T 1vrb_A          145 VYAAKNGGGFKAHFDA-YTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLP--DAEIVN  221 (342)
T ss_dssp             EEEECSSCCCCSEECS-SEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCC--SSEEEE
T ss_pred             EEEeCCCCCCCCeECC-hhcEEEEEEEEEEEEEecCCccccccCcccccccccccccccccchhhccccccC--CceEEE
Confidence            45555 8899999964 45688888999999999 66532  000 0 000 0      0 0000 000001  235567


Q ss_pred             eCCCcEEEECCCCeEEEEecCCCCEEEEEEE
Q 040805          444 IRTDSAYIVPAGHPVVTVASQNNNLEVVCFE  474 (540)
Q Consensus       444 l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~  474 (540)
                      |.+|||++||+|++|+..+.+++...-++|.
T Consensus       222 L~pGD~LyiP~gwwH~v~s~~~~~slsvsi~  252 (342)
T 1vrb_A          222 LTPGTMLYLPRGLWHSTKSDQATLALNITFG  252 (342)
T ss_dssp             ECTTCEEEECTTCEEEEECSSCEEEEEEEEC
T ss_pred             ECCCcEEEeCCCccEEEEECCCCceEEEEEC
Confidence            9999999999999999988743333335554

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=94.93  E-value=0.2  Score=50.68  Aligned_cols=57  Identities=7%  Similarity=0.089  Sum_probs=38.4

Q ss_pred             CCCeEEEEEe-eEEEEEEEecCC------------------ceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeec
Q 040805          198 DADAVFFVSW-GQGTITVIRENN------------------RESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKS  258 (540)
Q Consensus       198 ~A~ei~yV~~-G~g~ig~V~~~~------------------~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~  258 (540)
                      .-+|++|++. .++.+|+-....                  .....|++||+|+||||++|.+-. |    . ++-+-.+
T Consensus       116 gKpE~~y~L~~~~~~~Gf~~~~~~~~~~~~l~~~~~~~~~lLn~v~l~pGd~~~ipaGt~HA~~~-G----~-~~Eiqa~  189 (300)
T 1zx5_A          116 GVESAWLVFNKGKAYAGFKEDVKIEELEEKLKEEDFDFKTLLNTFETTPYDTFVIRPGIPHAGEG-L----R-VLEVSSN  189 (300)
T ss_dssp             CCCEEEEECSSCEEEEEESSCCCHHHHHHHHTSSSCCGGGGEEEEECCTTCEEEECTTCCEEEES-E----E-EEEEEES
T ss_pred             CCcEEEEEcccHHHhhCCCCCCCHHHHHHHHHhCchhHHHHhceeECCCCCEEEcCCCCceEcCC-C----C-eeeeccc
Confidence            4578888887 577778643211                  123589999999999999999833 2    3 5555544


Q ss_pred             CC
Q 040805          259 IN  260 (540)
Q Consensus       259 ~~  260 (540)
                      |+
T Consensus       190 SD  191 (300)
T 1zx5_A          190 ST  191 (300)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=94.83  E-value=0.16  Score=54.17  Aligned_cols=81  Identities=12%  Similarity=0.126  Sum_probs=52.9

Q ss_pred             EEEEEcCCCccc--ccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECC
Q 040805          377 SYANISKGAMAA--PFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPA  454 (540)
Q Consensus       377 ~~~~L~pggm~~--PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPa  454 (540)
                      ..+-+.|+|-..  |||. ..+-+++.+.|+=++.+..|..+.....+..-    +.+...  ..+...|.+|||++||+
T Consensus       141 ~n~y~~~~g~~g~~~H~D-~~dvf~~Qv~G~Krw~l~~p~~pl~~~~s~d~----~~~~~~--~~~~~~L~pGD~LYiP~  213 (442)
T 2xdv_A          141 SNVYITPAGSQGLPPHYD-DVEVFILQLEGEKHWRLYHPTVPLAREYSVEA----EERIGR--PVHEFMLKPGDLLYFPR  213 (442)
T ss_dssp             EEEEEECTTCBCSCSEEC-SSEEEEEEEESCEEEEEECCSSTTCSSCEECC----TTTSCS--CSEEEEECTTCEEEECT
T ss_pred             cceEECCCCCCCccceEC-CcceEEEEEEeEEEEEEccCCCCccccCCCCc----hhhcCC--cceEEEECCCcEEEECC
Confidence            345667777655  9995 45668888899999999988642100000000    000111  23456799999999999


Q ss_pred             CCeEEEEecC
Q 040805          455 GHPVVTVASQ  464 (540)
Q Consensus       455 G~~h~~~n~~  464 (540)
                      |++|+..+..
T Consensus       214 g~~H~~~s~~  223 (442)
T 2xdv_A          214 GTIHQADTPA  223 (442)
T ss_dssp             TCEEEEECCS
T ss_pred             CceEEEEecC
Confidence            9999988764

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=94.82  E-value=0.25  Score=47.09  Aligned_cols=100  Identities=9%  Similarity=0.092  Sum_probs=66.4

Q ss_pred             ceeecCCceEEEeccCcccccccc--cc-ccceeeeeeeCCCccccccccC----CCeEEEEEeeEEEEEEEecCC----
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLR--GL-EKYRLGILIANPQTFVTPTHLD----ADAVFFVSWGQGTITVIRENN----  219 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~--Gi-~~~rl~~~~l~Pggl~~Ph~~~----A~ei~yV~~G~g~ig~V~~~~----  219 (540)
                      .++..+-|.+..+  |...  .|.  |+ ...++.+..-.+|.++--||+.    ...+++|++|+...-+|+-..    
T Consensus        38 ~~~~D~RG~f~e~--~~~~--~f~~~gi~~f~Q~n~S~s~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpT  113 (196)
T 1wlt_A           38 KVFPDKRGFFLEV--FKSE--DFTKMRIPNVIQTNMSFSRKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPT  113 (196)
T ss_dssp             CCEEETTEEEEEE--EEHH--HHHHTTCCCEEEEEEEEECTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTT
T ss_pred             CceecCCcCEEEE--Eecc--hhhhcCCCCEEEEEEEECCCCcceeEEccCCCCCCceEEEEeCCEEEEEEEECCCCCCC
Confidence            3445556666665  3321  111  21 1234444455789888888875    479999999999888887542    


Q ss_pred             ---ceEEeeCC--CcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          220 ---RESYNVKR--GDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       220 ---~~~~~l~~--GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                         ...+.|.+  +..++||+|+.|-+.|.++  ...++...
T Consensus       114 fG~~~~v~Ls~en~~~L~IP~G~aHgf~~lsd--~a~~ly~~  153 (196)
T 1wlt_A          114 FGKYVKAELNEENHYMLWIPPGFAHGFQALED--SIVIYFIT  153 (196)
T ss_dssp             TTCEEEEEEETTTCCEEEECTTEEEEEEESSS--EEEEEEEE
T ss_pred             CCeEEEEEecCCCCCEEEeCCCeEEEEEEcCC--CeEEEEEe
Confidence               25667764  7999999999999999974  34444333

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=94.70  E-value=0.22  Score=47.45  Aligned_cols=106  Identities=12%  Similarity=0.000  Sum_probs=73.7

Q ss_pred             ceeecCCceEEEeccCcccccccc--ccc--c-----ceeeeeeeCCCccccccccCCCeEEEEEe-eEEEEEEEecC--
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLR--GLE--K-----YRLGILIANPQTFVTPTHLDADAVFFVSW-GQGTITVIREN--  218 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~--Gi~--~-----~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~-G~g~ig~V~~~--  218 (540)
                      .++..+-|.+...  |...  .+.  |+.  .     .+.-+..-.+|.++-.|+|.-..+++|++ |+...-+|+-.  
T Consensus        27 ~~~~D~RG~f~e~--f~~~--~~~~~g~~~~F~~~~i~Q~n~S~s~~GvlRGlH~h~q~Klv~~~~~G~v~dV~VDlR~S  102 (197)
T 1nxm_A           27 PVHGDNRGWFKEN--FQKE--KMLPLGFPESFFAEGKLQNNVSFSRKNVLRGLHAEPWDKYISVADGGKVLGTWVDLREG  102 (197)
T ss_dssp             CEEEETTEEEEEE--EEHH--HHTTTTCCGGGGTTCCCEEEEEEEETTBEEEEEECSSCEEEEECSSCCEEEEEEECBSS
T ss_pred             ceEeeCCcCEEEE--echH--HHHHcCCCcccccCceEEEEEEECCCCCcceeeecccceEEEEcCCCEEEEEEEECCCC
Confidence            4556677777664  4432  111  322  2     45544455788888889888889999999 99988888864  


Q ss_pred             ----CceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCC
Q 040805          219 ----NRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLP  262 (540)
Q Consensus       219 ----~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~p  262 (540)
                          ....+.|..+..++||+|+.|-+.+..+  ...++...+...+|
T Consensus       103 pTfg~~~~v~Ls~~~~L~IP~G~aHgf~~lsd--~a~~~y~~s~~Y~p  148 (197)
T 1nxm_A          103 ETFGNTYQTVIDASKSIFVPRGVANGFQVLSD--FVAYSYLVNDYWAL  148 (197)
T ss_dssp             TTTTCEEEEEECTTEEEEECTTEEEEEEECSS--EEEEEEEESSCCCG
T ss_pred             CCCCeEEEEEeCCCcEEEeCCCeEEEEEeccC--CeEEEEECCCccCh
Confidence                3356788889999999999999999873  35554444333344

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=94.66  E-value=0.27  Score=47.17  Aligned_cols=106  Identities=9%  Similarity=0.094  Sum_probs=70.7

Q ss_pred             ceeecCCceEEEeccCcccccccc---c---cccceeeeeeeCCCccccccccC----CCeEEEEEeeEEEEEEEecCC-
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLR---G---LEKYRLGILIANPQTFVTPTHLD----ADAVFFVSWGQGTITVIRENN-  219 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~---G---i~~~rl~~~~l~Pggl~~Ph~~~----A~ei~yV~~G~g~ig~V~~~~-  219 (540)
                      .++..+-|.+..+  |...  .|.   |   ....+..+..-.+|.++--|++.    ...+++|++|+...-+|+-.. 
T Consensus        17 ~~~~D~RG~f~e~--~~~~--~f~~~~g~~~~~f~Q~n~S~s~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~   92 (205)
T 1oi6_A           17 RVFADDRGLLILP--YQEE--AFVEAHGGPLFRVAQTIHSMSKRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVG   92 (205)
T ss_dssp             CCEEETTEEEECS--CBHH--HHHHHHSSCCCCCCEEEEEEECTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBT
T ss_pred             CeEecCCcCEEEE--eehh--hhHhhcCCCCCCEEEEEEEeCCCCeEeeeeccCCCCCCceEEEEeCCEEEEEEEECCCC
Confidence            3556677777765  5432  111   2   23345555556789888888874    589999999999888887542 


Q ss_pred             ------ceEEeeCC--CcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCC
Q 040805          220 ------RESYNVKR--GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLP  262 (540)
Q Consensus       220 ------~~~~~l~~--GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~p  262 (540)
                            ...+.|.+  +..++||+|+.|-+.|.+++  ..++...+...+|
T Consensus        93 SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgf~~lsd~--a~~~y~~s~~Y~p  141 (205)
T 1oi6_A           93 SPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDD--TVMSYMLSRSYVT  141 (205)
T ss_dssp             CTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTT--EEEEEEESSCCCG
T ss_pred             CCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEccCC--eEEEEecCCccCH
Confidence                  24567755  68999999999999999744  4444444333334

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=94.55  E-value=2.3  Score=42.40  Aligned_cols=67  Identities=9%  Similarity=0.046  Sum_probs=46.2

Q ss_pred             eCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCC--CeEEEEeCCCCccEEEEEEe
Q 040805          186 ANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSG--NTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       186 l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG--~~h~~~N~g~~e~l~~v~i~  256 (540)
                      +.|+.-+.||=| +-+-|.||++|...-.  +. -...-.|++|||-+.-||  +.|.=.|.. +.++..+=+.
T Consensus        46 ~~~~~gf~~HPHrg~EtVTyvl~G~~~H~--DS-~Gn~~~i~~GdvQwMtAG~GI~HsE~~~~-~~~~~~lQlW  115 (277)
T 2p17_A           46 IFERGTFDVHPHRGIETVTYVISGELEHF--DS-KAGHSTLGPGDVQWMTAGRGVVHKEDPAS-GSTVHSLQLW  115 (277)
T ss_dssp             EECTTCCCCEEECSEEEEEEEEESCEEEE--ET-TTEEEEECTTCEEEEECTTCEEEEEEECT-TCCEEEEEEE
T ss_pred             CCCCCCCCCCCCCCcEEEEEEEEeEEEEe--eC-CCCceEECCCeEEEEeCCCCEEEEeecCC-CCCEEEEEEE
Confidence            355554466644 5677899999985332  22 234578999999999987  578888975 4567766554

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=94.54  E-value=0.3  Score=46.55  Aligned_cols=88  Identities=8%  Similarity=0.006  Sum_probs=63.1

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      .+++..+...||.-..+|=|.++.-+++|++|....++..-....       .  .   .  . -..-...|.+|||.++
T Consensus        69 ~~~l~ll~W~PGq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~~-------~--~---~--l-~~~~~~~l~~G~v~~~  133 (200)
T 3eln_A           69 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKK-------S--N---E--M-IKKSERTLRENQCAYI  133 (200)
T ss_dssp             TCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSS-------C--C---C--C-CEEEEEEECTTCEEEE
T ss_pred             ceEEEEEEECCCCcCCCccCCCceEEEEEEeeeEEEEEeecCCCC-------c--c---c--c-cccceEEeCCCCEEEe
Confidence            367788999999999999999999999999999999876532110       0  0   0  0 0122357899999999


Q ss_pred             -CCCCeEEEEecC-CCCEEEEEEEecC
Q 040805          453 -PAGHPVVTVASQ-NNNLEVVCFEINA  477 (540)
Q Consensus       453 -PaG~~h~~~n~~-~e~l~~v~F~~~a  477 (540)
                       |.+..|.+.|.+ ++.  .|++++.+
T Consensus       134 ~~~~giH~V~N~s~~~~--avSlHvY~  158 (200)
T 3eln_A          134 NDSIGLHRVENVSHTEP--AVSLHLYS  158 (200)
T ss_dssp             CTTTCEEEEECCCSSCC--EEEEEEEE
T ss_pred             cCCCcEEEEECCCCCCC--EEEEEeCC
Confidence             889999998875 443  34444333

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=94.39  E-value=0.11  Score=53.73  Aligned_cols=91  Identities=10%  Similarity=0.054  Sum_probs=56.3

Q ss_pred             EEEc-CCCcccccccCCCcEEEEEEeceEEEEEEcCCCCC----Cccc--ccccCC---Ccc-ccCCc---cceEEeeee
Q 040805          379 ANIS-KGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSR----SSSE--RRHQGS---STR-EEGSA---TYHKVSSRI  444 (540)
Q Consensus       379 ~~L~-pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~----~~~~--~~~~~~---~~~-~~~~~---~~~~~~~~l  444 (540)
                      +-|. +|+...+||.+. +-|..++.|+=++.++.|....    ....  ..+.+.   ... -+.-.   ....+...|
T Consensus       187 l~iG~~gs~t~~H~D~~-~n~~~qv~G~K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l  265 (349)
T 3d8c_A          187 LLIGMEGNVTPAHYGEQ-QNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVV  265 (349)
T ss_dssp             EEEECTTCEEEEECCSE-EEEEEEEESCEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGGCCEEEEEE
T ss_pred             EEEECCCCCccceECCh-hcEEEEEeceEEEEEeCcchhhhhccccccCCCCCcccccCCCcchhhCcccccCCcEEEEE
Confidence            4455 556778899766 6789999999999999986420    0000  000000   000 00000   013466789


Q ss_pred             CCCcEEEECCCCeEEEEecCCCCEEE
Q 040805          445 RTDSAYIVPAGHPVVTVASQNNNLEV  470 (540)
Q Consensus       445 ~~GDV~vVPaG~~h~~~n~~~e~l~~  470 (540)
                      ++||+++||+|+.|+..+.++..+.+
T Consensus       266 ~pGD~LyiP~gWwH~V~~l~d~~~si  291 (349)
T 3d8c_A          266 GPGDVLYIPMYWWHHIESLLNGGITI  291 (349)
T ss_dssp             CTTCEEEECTTCEEEEEECTTSCCEE
T ss_pred             CCCCEEEECCCCcEEEEEcCCCCcEE
Confidence            99999999999999999875334443

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=94.34  E-value=0.16  Score=52.34  Aligned_cols=61  Identities=10%  Similarity=0.035  Sum_probs=46.2

Q ss_pred             eeC-CCccccccccCCCeEEEEEeeEEEEEEEecCC------------------------------------ceEEeeCC
Q 040805          185 IAN-PQTFVTPTHLDADAVFFVSWGQGTITVIRENN------------------------------------RESYNVKR  227 (540)
Q Consensus       185 ~l~-Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~------------------------------------~~~~~l~~  227 (540)
                      -|- +|+...+|+-..+-|..++.|+=++.++.|..                                    .....|++
T Consensus       188 ~iG~~gs~t~~H~D~~~n~~~qv~G~K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~p  267 (349)
T 3d8c_A          188 LIGMEGNVTPAHYGEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGP  267 (349)
T ss_dssp             EEECTTCEEEEECCSEEEEEEEEESCEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGGCCEEEEEECT
T ss_pred             EEECCCCCccceECChhcEEEEEeceEEEEEeCcchhhhhccccccCCCCCcccccCCCcchhhCcccccCCcEEEEECC
Confidence            444 44555555533567888999999988887642                                    13468999


Q ss_pred             CcEEEECCCCeEEEEeCC
Q 040805          228 GDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       228 GDv~~iPaG~~h~~~N~g  245 (540)
                      ||+++||+|..|++.|.+
T Consensus       268 GD~LyiP~gWwH~V~~l~  285 (349)
T 3d8c_A          268 GDVLYIPMYWWHHIESLL  285 (349)
T ss_dssp             TCEEEECTTCEEEEEECT
T ss_pred             CCEEEECCCCcEEEEEcC
Confidence            999999999999999986

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=94.33  E-value=0.3  Score=46.77  Aligned_cols=107  Identities=10%  Similarity=0.062  Sum_probs=68.9

Q ss_pred             ceeecCCceEEEeccCcccccccc--cc--ccceeeee-eeCCCccccccccC----CCeEEEEEeeEEEEEEEecCC--
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLR--GL--EKYRLGIL-IANPQTFVTPTHLD----ADAVFFVSWGQGTITVIRENN--  219 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~--Gi--~~~rl~~~-~l~Pggl~~Ph~~~----A~ei~yV~~G~g~ig~V~~~~--  219 (540)
                      .++..+-|.+..+  |...  .|.  |+  ...+..+. ...+|.++-.||+.    -.++++|++|++..-+|+-..  
T Consensus        41 ~~~~D~RG~F~E~--~~~~--~f~~~gi~~~f~Q~n~S~S~~~GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~S  116 (205)
T 3ryk_A           41 RLFGDDRGFFTES--YNKK--VLETLGVTHSFVQDNVSYSAEAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDS  116 (205)
T ss_dssp             CEEEETTEEEEEE--EEHH--HHHHTTCCCCCCEEEEEEESSTTBEEEEEEECTTSCCCEEEEEEESEEEEEEEECCTTS
T ss_pred             CeEeeCCCCEEEE--eehH--HHHHcCCCCCeeEEEEEEeCCCCcEeEeEecCCCCCceEEEEEeCCeEEEEEEECCCCC
Confidence            4556666776654  4321  121  21  22333332 33789999889874    589999999999888887531  


Q ss_pred             -----ceEEeeCC--CcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCC
Q 040805          220 -----RESYNVKR--GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPG  263 (540)
Q Consensus       220 -----~~~~~l~~--GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg  263 (540)
                           ...+.|.+  +-.++||+|+.|-+.|.+++  ..++...+...+|.
T Consensus       117 pTfg~~~~~~Ls~~n~~~L~IP~G~aHGF~~Lsd~--a~~~Y~~s~~Y~p~  165 (205)
T 3ryk_A          117 PTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPH--TIVMYKVDEYYSAD  165 (205)
T ss_dssp             TTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSS--EEEEEEESSCCCTT
T ss_pred             CCCCeEEEEEecCCCCCEEEeCCCceEEEEEcCCC--EEEEEEcCCCcCCC
Confidence                 14567754  89999999999999999743  44443443333443

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=94.30  E-value=0.42  Score=46.15  Aligned_cols=107  Identities=8%  Similarity=0.022  Sum_probs=71.0

Q ss_pred             ceeecCCceEEEeccCcccccccc---cc--ccceeeeeeeCCCccccccccC----CCeEEEEEeeEEEEEEEecCC--
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLR---GL--EKYRLGILIANPQTFVTPTHLD----ADAVFFVSWGQGTITVIRENN--  219 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~---Gi--~~~rl~~~~l~Pggl~~Ph~~~----A~ei~yV~~G~g~ig~V~~~~--  219 (540)
                      .++..+-|.+..+  |...  .+.   |+  ...+..+..-.+|.++--||+.    ...+++|++|++..-+|+-..  
T Consensus        26 ~~~~D~RG~F~e~--~~~~--~~~~~~gi~~~f~Q~n~S~s~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~S  101 (216)
T 2c0z_A           26 EQRADPRGVFLDW--YHVD--RFAEAIGRPLRLAQANLSVSVRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGS  101 (216)
T ss_dssp             EEEEETTEEEEEC--CCHH--HHHHHHSSCCCCCEEEEEEEETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTC
T ss_pred             CeEecCCcCEEEE--eehh--HHHHhcCCCCCEEEEEEEeCCCCcEEcCEecCCCCCcceEEEEeCCeEEEEEEECCCCC
Confidence            4566677887765  5432  221   22  2344444455689898888875    589999999999888887542  


Q ss_pred             -----ceEEeeCC--CcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCC
Q 040805          220 -----RESYNVKR--GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPG  263 (540)
Q Consensus       220 -----~~~~~l~~--GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg  263 (540)
                           ...+.|.+  +..++||+|+.|-+.|.+++  ..++...+...+|.
T Consensus       102 pTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~--a~~ly~~s~~Y~p~  150 (216)
T 2c0z_A          102 PTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDE--ATLCYLSSGTYDPA  150 (216)
T ss_dssp             TTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE--EEEEEEESSCCCTT
T ss_pred             CCCCeEEEEEecCCCCCEEEeCCCeeEEEEEcCCC--eEEEEecCCccCHH
Confidence                 24566755  57999999999999999743  44444443333443

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=94.10  E-value=0.51  Score=45.83  Aligned_cols=107  Identities=12%  Similarity=0.063  Sum_probs=70.6

Q ss_pred             ceeecCCceEEEeccCcccccccc---c--cccceeeeeeeCCCccccccccC----CCeEEEEEeeEEEEEEEecCC--
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLR---G--LEKYRLGILIANPQTFVTPTHLD----ADAVFFVSWGQGTITVIRENN--  219 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~---G--i~~~rl~~~~l~Pggl~~Ph~~~----A~ei~yV~~G~g~ig~V~~~~--  219 (540)
                      .++..+-|.+..+  |...  .+.   |  ....+..+..-.+|.++--||+.    ...+++|++|++..-+|+-..  
T Consensus        37 ~~~~D~RG~F~e~--~~~~--~~~~~~gi~~~f~Q~n~S~s~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~S  112 (225)
T 1upi_A           37 TIHVDSRGLFFEW--LTDH--GFRAFAGHSLDVRQVNCSVSSAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGS  112 (225)
T ss_dssp             CEEEETTEEEECS--CCHH--HHHHHHSSCCCCCEEEEEEECTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTC
T ss_pred             ceEecCCcCEEEE--eehh--hHHHhcCCCCCeEEEEEEeCCCCeEeeeeccCCCCCcceEEEEeCCeEEEEEEECCCCC
Confidence            4556667777764  5432  121   2  23345545556789898888875    489999999999888887542  


Q ss_pred             -----ceEEeeCC--CcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCC
Q 040805          220 -----RESYNVKR--GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPG  263 (540)
Q Consensus       220 -----~~~~~l~~--GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg  263 (540)
                           ...+.|.+  +..++||+|+.|-+.|.+++  .+++...+...+|.
T Consensus       113 pTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~--a~vly~~s~~Y~p~  161 (225)
T 1upi_A          113 PTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDN--STVMYLCSAEYNPQ  161 (225)
T ss_dssp             TTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSS--EEEEEEESSCCCTT
T ss_pred             CCCCcEEEEEecCCCCcEEEeCCCeeEEEEEcCCC--EEEEEecCCccCHH
Confidence                 24566654  58999999999999999744  44444443333443

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=94.05  E-value=0.14  Score=52.47  Aligned_cols=59  Identities=14%  Similarity=0.200  Sum_probs=44.7

Q ss_pred             CCCccccccccCCCeEEEEEeeEEEEEEEecCC-------------------------------ceEEeeCCCcEEEECC
Q 040805          187 NPQTFVTPTHLDADAVFFVSWGQGTITVIRENN-------------------------------RESYNVKRGDIIRVPS  235 (540)
Q Consensus       187 ~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~-------------------------------~~~~~l~~GDv~~iPa  235 (540)
                      .+|+.+.+|+-..+-++.++.|+=++.+..|..                               .....|++||+++||+
T Consensus       175 ~~g~~~~~H~D~~~n~~~qv~G~K~w~L~pP~~~~~ly~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~L~pGD~LyiP~  254 (338)
T 3al5_A          175 SPGLQLWTHYDVMDNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEAGDVLFIPA  254 (338)
T ss_dssp             CTTCEEEEECCSSEEEEEECSSCEEEEEECGGGGGGGTEETTEESCCCSSSCCTTTCTTGGGCCEEEEEECTTCEEEECT
T ss_pred             CCCCCccceECCcccEEEEEEEEEEEEEECcccccccccCCCCcccccCCCcchhhCcccccCCCEEEEECCCCEEEECC
Confidence            344454555544566778899999988887631                               2356899999999999


Q ss_pred             CCeEEEEeCC
Q 040805          236 GNTFYVTNTD  245 (540)
Q Consensus       236 G~~h~~~N~g  245 (540)
                      |..|++.|.+
T Consensus       255 gWwH~v~~l~  264 (338)
T 3al5_A          255 LWFHNVISEE  264 (338)
T ss_dssp             TCEEEEEESS
T ss_pred             CCeEEEeeCC
Confidence            9999999985

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=94.02  E-value=0.26  Score=52.55  Aligned_cols=60  Identities=13%  Similarity=0.204  Sum_probs=45.6

Q ss_pred             eCCCccc-cccccCCCeEEEEEeeEEEEEEEecCC-----------------ceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          186 ANPQTFV-TPTHLDADAVFFVSWGQGTITVIRENN-----------------RESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       186 l~Pggl~-~Ph~~~A~ei~yV~~G~g~ig~V~~~~-----------------~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      -.+|+.. .|||-..+-++..+.|+=++.+..|..                 .....|++||+++||+|+.|+..+.+
T Consensus       146 ~~~g~~g~~~H~D~~dvf~~Qv~G~Krw~l~~p~~pl~~~~s~d~~~~~~~~~~~~~L~pGD~LYiP~g~~H~~~s~~  223 (442)
T 2xdv_A          146 TPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPA  223 (442)
T ss_dssp             ECTTCBCSCSEECSSEEEEEEEESCEEEEEECCSSTTCSSCEECCTTTSCSCSEEEEECTTCEEEECTTCEEEEECCS
T ss_pred             CCCCCCCccceECCcceEEEEEEeEEEEEEccCCCCccccCCCCchhhcCCcceEEEECCCcEEEECCCceEEEEecC
Confidence            3455554 477755666777888998888877642                 13578999999999999999999875

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=94.00  E-value=5.6  Score=39.85  Aligned_cols=69  Identities=9%  Similarity=-0.005  Sum_probs=47.2

Q ss_pred             eeeCCCcccccccc-CCCeEEEEE-eeEEEEEEEecCCceEEeeCCCcEEEECCC--CeEEEEeCCCCccEEEEEEe
Q 040805          184 LIANPQTFVTPTHL-DADAVFFVS-WGQGTITVIRENNRESYNVKRGDIIRVPSG--NTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       184 ~~l~Pggl~~Ph~~-~A~ei~yV~-~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG--~~h~~~N~g~~e~l~~v~i~  256 (540)
                      +.+.|+.-+.||=| +-+-|.||+ +|...-.  +. -...-.|++|||-+.-||  +.|.=.|.+ +.++..+=+.
T Consensus        45 ~~~~~~~Gf~~HPHrg~EtVTyvl~~G~~~H~--DS-~Gn~~~i~~GdvQwMtAG~GI~HsE~~~~-~~~~~~lQlW  117 (290)
T 1j1l_A           45 FKGGRPGGFPDHPHRGFETVSYLLEGGSMAHE--DF-CGHTGKMNPGDLQWMTAGRGILHAEMPCS-EEPAHGLQLW  117 (290)
T ss_dssp             EEECTTCBEEEEEEBSEEEEEEECSSSCEEEE--ET-TSCEEEECTTCEEEEECTTCEEEEEEECS-SSCEEEEEEE
T ss_pred             cccCCCCCCCCCCCCCeEEEEEECcceEEEEe--eC-CCCceEECCCcEEEEeCCCCEEEEeEcCC-CCCEEEEEEE
Confidence            34567644466644 566789999 9976433  22 224568999999999987  578888874 4577776555

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=93.97  E-value=0.39  Score=45.19  Aligned_cols=106  Identities=8%  Similarity=-0.017  Sum_probs=69.7

Q ss_pred             ceeecCCceEEEeccCcccccccc---c--cccceeeeeeeCCCcccccccc---CCCeEEEEEeeEEEEEEEecCC---
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLR---G--LEKYRLGILIANPQTFVTPTHL---DADAVFFVSWGQGTITVIRENN---  219 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~---G--i~~~rl~~~~l~Pggl~~Ph~~---~A~ei~yV~~G~g~ig~V~~~~---  219 (540)
                      .++..+-|.+..+  |...  .+.   |  ....+..+..-.+|.++--|++   ....+++|++|+...-+|+-..   
T Consensus        20 ~~~~D~RG~f~e~--~~~~--~~~~~~g~~~~f~Q~n~S~s~~GvlRG~H~q~p~~q~Klv~vv~G~v~dV~vD~R~~Sp   95 (184)
T 2ixk_A           20 RVFGDDRGFFFES--YNQR--AFEEACGHPVSFVQDNHSRSARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSP   95 (184)
T ss_dssp             CEEEETTEEEEEE--EEHH--HHHHHHSSCCCCCEEEEEEEETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTST
T ss_pred             ceEecCCccEEEE--eehh--hhHhhcCCCCCEEEEEEEeCCCCceeeEEeCCCCCcCEEEEEeCCeEEEEEEECCCCCC
Confidence            4566677777775  4432  111   1  1234444445568988888877   4689999999999888887542   


Q ss_pred             ----ceEEeeCC--CcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCC
Q 040805          220 ----RESYNVKR--GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLP  262 (540)
Q Consensus       220 ----~~~~~l~~--GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~p  262 (540)
                          ...+.|.+  +..++||+|+.|-+.|.++  ...++...+...+|
T Consensus        96 Tfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd--~a~~~y~~s~~Y~p  142 (184)
T 2ixk_A           96 TFGQWVGERLSAENKRQMWIPAGFAHGFVVLSE--YAEFLYKTTDFWAP  142 (184)
T ss_dssp             TTTCEEEEEEETTTCCEEEECTTEEEEEEECSS--EEEEEEEESSCCCG
T ss_pred             CCCeEEEEEeCCCcCCEEEeCCCeEEEEEEcCC--CEEEEEeCCCccCh
Confidence                24566654  6899999999999999974  35555444333333

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=93.95  E-value=0.3  Score=50.02  Aligned_cols=94  Identities=11%  Similarity=0.076  Sum_probs=56.0

Q ss_pred             ceEEEEEEcCC-CcccccccCCCcEEEEEEeceEEEEEEcCCCCCCccccccc--C-----CCccc-cC-CccceEEeee
Q 040805          374 ITVSYANISKG-AMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQ--G-----SSTRE-EG-SATYHKVSSR  443 (540)
Q Consensus       374 isv~~~~L~pg-gm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~--~-----~~~~~-~~-~~~~~~~~~~  443 (540)
                      +....+-|.+. +-..+||.+. +-+..++.|+=++.++.|..... =...+.  +     ...-+ -. -.....+...
T Consensus       166 ~~~s~l~~g~~g~~~~~H~D~~-~n~~~qv~G~K~w~L~pP~~~~~-ly~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~  243 (338)
T 3al5_A          166 FFSSVFRISSPGLQLWTHYDVM-DNLLIQVTGKKRVVLFSPRDAQY-LYLKGTKSEVLNIDNPDLAKYPLFSKARRYECS  243 (338)
T ss_dssp             EEEEEEEEECTTCEEEEECCSS-EEEEEECSSCEEEEEECGGGGGG-GTEETTEESCCCSSSCCTTTCTTGGGCCEEEEE
T ss_pred             cccceeEECCCCCCccceECCc-ccEEEEEEEEEEEEEECcccccc-cccCCCCcccccCCCcchhhCcccccCCCEEEE
Confidence            33344555554 4556699764 56888999999999999853200 000000  0     00000 00 0001346678


Q ss_pred             eCCCcEEEECCCCeEEEEecCCCCEEE
Q 040805          444 IRTDSAYIVPAGHPVVTVASQNNNLEV  470 (540)
Q Consensus       444 l~~GDV~vVPaG~~h~~~n~~~e~l~~  470 (540)
                      |++||+++||+|+.|+..|.+ ..+.+
T Consensus       244 L~pGD~LyiP~gWwH~v~~l~-~sisv  269 (338)
T 3al5_A          244 LEAGDVLFIPALWFHNVISEE-FGVGV  269 (338)
T ss_dssp             ECTTCEEEECTTCEEEEEESS-CEEEE
T ss_pred             ECCCCEEEECCCCeEEEeeCC-CEEEE
Confidence            999999999999999999873 34444

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=93.87  E-value=0.23  Score=53.08  Aligned_cols=62  Identities=23%  Similarity=0.301  Sum_probs=47.7

Q ss_pred             eeeCCCccccccccC---CCeEEEEEeeEEEEEEEecCCc--------------------------eEEeeCCCcEEEEC
Q 040805          184 LIANPQTFVTPTHLD---ADAVFFVSWGQGTITVIRENNR--------------------------ESYNVKRGDIIRVP  234 (540)
Q Consensus       184 ~~l~Pggl~~Ph~~~---A~ei~yV~~G~g~ig~V~~~~~--------------------------~~~~l~~GDv~~iP  234 (540)
                      +-+-|.+...+.|.|   +.-|..|+.|+=+.-++.|+..                          ....+++||+++||
T Consensus       235 ~~mG~~gS~T~~HiD~~~ts~w~~vi~GrK~w~L~PPt~~nl~~~~~~~~s~~~~~~~~~~~~~~~~~v~l~pGetlfIP  314 (447)
T 3kv4_A          235 CLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIP  314 (447)
T ss_dssp             EEEECTTEEEEEECCGGGCEEEEEEEESEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGGSSCCEEEEEETTCEEEEC
T ss_pred             EEEeCCCCCCCeeECCCCCceeEEEeeeEEEEEEeCCCcccccchhhcccCcchhhhhccccccceEEEEECCCcEEecC
Confidence            455566555555643   5568899999999988877521                          23588999999999


Q ss_pred             CCCeEEEEeCC
Q 040805          235 SGNTFYVTNTD  245 (540)
Q Consensus       235 aG~~h~~~N~g  245 (540)
                      +|..|+++|..
T Consensus       315 sGWwH~V~nle  325 (447)
T 3kv4_A          315 TGWIHAVLTPV  325 (447)
T ss_dssp             TTCEEEEEESS
T ss_pred             CCCeEEEecCC
Confidence            99999999986

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=93.86  E-value=0.2  Score=53.90  Aligned_cols=65  Identities=20%  Similarity=0.203  Sum_probs=45.3

Q ss_pred             CCCccc-cccccCCCeEEEEEeeEEEEEEEecCCc---------------------eEEeeCCCcEEEECCCCeEEEEeC
Q 040805          187 NPQTFV-TPTHLDADAVFFVSWGQGTITVIRENNR---------------------ESYNVKRGDIIRVPSGNTFYVTNT  244 (540)
Q Consensus       187 ~Pggl~-~Ph~~~A~ei~yV~~G~g~ig~V~~~~~---------------------~~~~l~~GDv~~iPaG~~h~~~N~  244 (540)
                      .||+.. .|||-+-+-++.-+.|+=+..+..|...                     ....|++||+++||+|+.|+..+.
T Consensus       172 p~Gs~g~~pH~D~~DvFllQv~G~KrWrL~~P~~~~~~lp~~~~~~~~~~~~~~p~~e~~L~pGDvLYiP~g~~H~~~s~  251 (489)
T 4diq_A          172 PPNSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQ  251 (489)
T ss_dssp             CSSBCCSCCBCCSSEEEEEEEEECEEEEEECCSSGGGTTCSSCCCCCCGGGCCCCSEEEEECTTCEEEECTTCEEEEEBC
T ss_pred             CCCcccccCccCCcceEEEEEeeEEEEEEeCCCCccccCCCcccccCCcccccCcceEEEECCCCEEEECCCCceEEEec
Confidence            444443 5666555666666777777777765421                     247899999999999999999998


Q ss_pred             CCCccEE
Q 040805          245 DDDEKLY  251 (540)
Q Consensus       245 g~~e~l~  251 (540)
                      ++.-.+.
T Consensus       252 ~~~~Slh  258 (489)
T 4diq_A          252 DGVHSLH  258 (489)
T ss_dssp             SSCCEEE
T ss_pred             CCCceEE
Confidence            6433343

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=93.80  E-value=0.58  Score=43.99  Aligned_cols=106  Identities=8%  Similarity=0.006  Sum_probs=68.9

Q ss_pred             ceeecCCceEEEeccCcccccccc---c--cccceeeeeeeCCCcccccccc----CCCeEEEEEeeEEEEEEEecCC--
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLR---G--LEKYRLGILIANPQTFVTPTHL----DADAVFFVSWGQGTITVIRENN--  219 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~---G--i~~~rl~~~~l~Pggl~~Ph~~----~A~ei~yV~~G~g~ig~V~~~~--  219 (540)
                      .++..+-|.+..+  |...  .+.   |  ....+..+..-.+|.++--|++    ....+++|++|+...-+|+-..  
T Consensus        18 ~~~~D~RG~f~e~--~~~~--~~~~~~g~~~~f~Q~n~S~s~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~S   93 (183)
T 1dzr_A           18 KVFGDERGFFFES--YNQQ--TFEELIGRKVTFVQDNHSKSKKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKES   93 (183)
T ss_dssp             CEEEETTEEEEEE--EEHH--HHHHHHSSCCCCCEEEEEEEETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTC
T ss_pred             CeEecCCcCEEEE--eehh--hHHhccCCCCCEEEEEEEeCCCCeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCCC
Confidence            3556667777764  4432  111   1  1233444445568988888876    3589999999999888887542  


Q ss_pred             -----ceEEeeCC--CcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCC
Q 040805          220 -----RESYNVKR--GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLP  262 (540)
Q Consensus       220 -----~~~~~l~~--GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~p  262 (540)
                           ...+.|.+  +..++||+|+.|-+.|.+++  ..++...+...+|
T Consensus        94 pTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~--a~~~y~~s~~Y~p  141 (183)
T 1dzr_A           94 PTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEY--AEFLYKATNYYSP  141 (183)
T ss_dssp             TTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE--EEEEEEESSCCCT
T ss_pred             CCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC--eEEEEEcCCccCH
Confidence                 24566654  68999999999999999743  4444343333334

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=93.79  E-value=0.37  Score=51.92  Aligned_cols=95  Identities=9%  Similarity=0.128  Sum_probs=56.4

Q ss_pred             EEEEEcCCCcc--cccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCC--ccccCCccceEEeeeeCCCcEEEE
Q 040805          377 SYANISKGAMA--APFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSS--TREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       377 ~~~~L~pggm~--~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      +.+-+.|+|-.  .|||.+ -+-+++-+.|+=++.|..|..... --.. ....  ...+...  ..+...|++|||++|
T Consensus       166 ~N~Y~tp~Gs~g~~pH~D~-~DvFllQv~G~KrWrL~~P~~~~~-~lp~-~~~~~~~~~~~~~--p~~e~~L~pGDvLYi  240 (489)
T 4diq_A          166 SNVYLTPPNSQGFAPHYDD-IEAFVLQLEGRKLWRVYRPRAPTE-ELAL-TSSPNFSQDDLGE--PVLQTVLEPGDLLYF  240 (489)
T ss_dssp             EEEEEECSSBCCSCCBCCS-SEEEEEEEEECEEEEEECCSSGGG-TTCS-SCCCCCCGGGCCC--CSEEEEECTTCEEEE
T ss_pred             ceEEecCCCcccccCccCC-cceEEEEEeeEEEEEEeCCCCccc-cCCC-cccccCCcccccC--cceEEEECCCCEEEE
Confidence            34677788764  599954 345667777888999988754210 0000 0000  0001111  235568999999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEEEec
Q 040805          453 PAGHPVVTVASQNNNLEVVCFEIN  476 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F~~~  476 (540)
                      |+|++|+..+.++..-.=+.|.+.
T Consensus       241 P~g~~H~~~s~~~~~SlhlTi~~~  264 (489)
T 4diq_A          241 PRGFIHQAECQDGVHSLHLTLSTY  264 (489)
T ss_dssp             CTTCEEEEEBCSSCCEEEEEEEEC
T ss_pred             CCCCceEEEecCCCceEEEeeccc
Confidence            999999999875432222444443

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=93.65  E-value=0.56  Score=44.18  Aligned_cols=106  Identities=10%  Similarity=0.046  Sum_probs=69.6

Q ss_pred             ceeecCCceEEEeccCcccccccc--cc--ccceeeeeeeCCCcccccccc---CCCeEEEEEeeEEEEEEEecCC----
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLR--GL--EKYRLGILIANPQTFVTPTHL---DADAVFFVSWGQGTITVIRENN----  219 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~--Gi--~~~rl~~~~l~Pggl~~Ph~~---~A~ei~yV~~G~g~ig~V~~~~----  219 (540)
                      .++..+-|.+..+  |...  .+.  |+  ...+..+..-.+|.++--|++   .-..+++|++|++..-+|+-..    
T Consensus        20 ~~~~D~RG~f~e~--~~~~--~~~~~g~~~~f~Q~n~S~s~~GvlRGlH~q~p~~q~klv~vv~G~v~dV~VD~R~~SpT   95 (185)
T 1ep0_A           20 EVYTDERGYFMET--FNEA--IFQENGLEVRFVQDNESMSVRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDT   95 (185)
T ss_dssp             CEEEETTEEEECC--CCHH--HHHHTTCCCCCCEEEEEEEETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTT
T ss_pred             CeEecCCccEEEE--eehh--hHHhcCCCCCEEEEEEEeCcCCeEecceecCCccccEEEEEeCCeEEEEEEECCCCCCC
Confidence            3556667777654  4432  221  21  234444445568999888877   4689999999999888887542    


Q ss_pred             ---ceEEeeCC--CcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCC
Q 040805          220 ---RESYNVKR--GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLP  262 (540)
Q Consensus       220 ---~~~~~l~~--GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~p  262 (540)
                         ...+.|.+  +..++||+|+.|-+.|.++  ...++...+...+|
T Consensus        96 fg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd--~a~~~y~~s~~Y~p  141 (185)
T 1ep0_A           96 YGEWTGVRLSDENRREFFIPEGFAHGFLALSD--ECIVNYKCTELYHP  141 (185)
T ss_dssp             TTCEEEEEEETTTCCEEEECTTEEEEEEECSS--EEEEEEEESSCCCG
T ss_pred             CCeEEEEEecCCCCCEEEeCCCeEEEEEEcCC--CeEEEEecCCccCh
Confidence               24566644  6899999999999999974  35555444333334

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=93.52  E-value=0.58  Score=44.07  Aligned_cols=74  Identities=16%  Similarity=0.225  Sum_probs=54.0

Q ss_pred             cCCCccccccc--CCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccc-eEEeeeeCC--CcEEEECCCC
Q 040805          382 SKGAMAAPFYN--SRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY-HKVSSRIRT--DSAYIVPAGH  456 (540)
Q Consensus       382 ~pggm~~PH~h--~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--GDV~vVPaG~  456 (540)
                      .+|.++..|||  ..-+++++|++|+...-+|+-.-.                 |.+| +.....|++  +..++||+|+
T Consensus        56 ~~GvlRGlH~q~p~~q~klv~vv~G~v~dV~VD~R~~-----------------SpTfg~~~~~~Ls~~n~~~L~IP~G~  118 (185)
T 1ep0_A           56 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKN-----------------SDTYGEWTGVRLSDENRREFFIPEGF  118 (185)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTT-----------------CTTTTCEEEEEEETTTCCEEEECTTE
T ss_pred             cCCeEecceecCCccccEEEEEeCCeEEEEEEECCCC-----------------CCCCCeEEEEEecCCCCCEEEeCCCe
Confidence            48999999999  667899999999998878876431                 1111 223445654  6899999999


Q ss_pred             eEEEEecCCCCEEEEEE
Q 040805          457 PVVTVASQNNNLEVVCF  473 (540)
Q Consensus       457 ~h~~~n~~~e~l~~v~F  473 (540)
                      +|-+.+.++. .+++.+
T Consensus       119 aHgf~~lsd~-a~~~y~  134 (185)
T 1ep0_A          119 AHGFLALSDE-CIVNYK  134 (185)
T ss_dssp             EEEEEECSSE-EEEEEE
T ss_pred             EEEEEEcCCC-eEEEEe
Confidence            9999987554 555444

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=93.46  E-value=0.21  Score=53.99  Aligned_cols=62  Identities=24%  Similarity=0.396  Sum_probs=47.7

Q ss_pred             eeeCCCccccccccC---CCeEEEEEeeEEEEEEEecCCc--------------------------eEEeeCCCcEEEEC
Q 040805          184 LIANPQTFVTPTHLD---ADAVFFVSWGQGTITVIRENNR--------------------------ESYNVKRGDIIRVP  234 (540)
Q Consensus       184 ~~l~Pggl~~Ph~~~---A~ei~yV~~G~g~ig~V~~~~~--------------------------~~~~l~~GDv~~iP  234 (540)
                      +-|-|.+...|.|.|   +.-|..|+.|+=++-++.|+..                          ....+++||+++||
T Consensus       270 ~~mG~~gS~T~~H~D~~~t~~w~~vv~G~K~w~L~PPt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~pGe~lfIP  349 (488)
T 3kv5_D          270 CLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVP  349 (488)
T ss_dssp             EEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGSSSCCEEEEEETTCEEEEC
T ss_pred             EEEcCCCCCCCeEECCCCCceeeeccCeeEEEEEeCCcccccccccccccCCccchhhhcccccceEEEeeCCCCEEEeC
Confidence            455666655565543   4568899999999999888411                          23588999999999


Q ss_pred             CCCeEEEEeCC
Q 040805          235 SGNTFYVTNTD  245 (540)
Q Consensus       235 aG~~h~~~N~g  245 (540)
                      +|..|+++|.+
T Consensus       350 sGWwH~V~nle  360 (488)
T 3kv5_D          350 TGWIHAVLTSQ  360 (488)
T ss_dssp             TTCEEEEEEEE
T ss_pred             CCceEEeeCCC
Confidence            99999999985

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=93.45  E-value=0.44  Score=45.36  Aligned_cols=72  Identities=13%  Similarity=0.064  Sum_probs=54.5

Q ss_pred             cCCCcccccccCCCcEEEEEEe-ceEEEEEEcCCCCCCcccccccCCCccccCCccc-eEEeeeeCCCcEEEECCCCeEE
Q 040805          382 SKGAMAAPFYNSRSTKVAVVVA-GDGYIEIACPHVSRSSSERRHQGSSTREEGSATY-HKVSSRIRTDSAYIVPAGHPVV  459 (540)
Q Consensus       382 ~pggm~~PH~h~~A~ei~yV~~-G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~GDV~vVPaG~~h~  459 (540)
                      .+|.++..|+|+ -+++++|++ |+...-+|+-. .+                 .+| +.....|+.+..++||+|+.|-
T Consensus        68 ~~GvlRGlH~h~-q~Klv~~~~~G~v~dV~VDlR-~S-----------------pTfg~~~~v~Ls~~~~L~IP~G~aHg  128 (197)
T 1nxm_A           68 RKNVLRGLHAEP-WDKYISVADGGKVLGTWVDLR-EG-----------------ETFGNTYQTVIDASKSIFVPRGVANG  128 (197)
T ss_dssp             ETTBEEEEEECS-SCEEEEECSSCCEEEEEEECB-SS-----------------TTTTCEEEEEECTTEEEEECTTEEEE
T ss_pred             CCCCcceeeecc-cceEEEEcCCCEEEEEEEECC-CC-----------------CCCCeEEEEEeCCCcEEEeCCCeEEE
Confidence            689999999994 569999999 99888888875 21                 111 2344578889999999999999


Q ss_pred             EEecCCCCEEEEEE
Q 040805          460 TVASQNNNLEVVCF  473 (540)
Q Consensus       460 ~~n~~~e~l~~v~F  473 (540)
                      +.+.++ +.+++.+
T Consensus       129 f~~lsd-~a~~~y~  141 (197)
T 1nxm_A          129 FQVLSD-FVAYSYL  141 (197)
T ss_dssp             EEECSS-EEEEEEE
T ss_pred             EEeccC-CeEEEEE
Confidence            888754 4555544

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A

Probab=93.41  E-value=0.28  Score=52.45  Aligned_cols=62  Identities=18%  Similarity=0.253  Sum_probs=49.1

Q ss_pred             eeeCCCccccccccC---CCeEEEEEeeEEEEEEEecCCc--------------------------eEEeeCCCcEEEEC
Q 040805          184 LIANPQTFVTPTHLD---ADAVFFVSWGQGTITVIRENNR--------------------------ESYNVKRGDIIRVP  234 (540)
Q Consensus       184 ~~l~Pggl~~Ph~~~---A~ei~yV~~G~g~ig~V~~~~~--------------------------~~~~l~~GDv~~iP  234 (540)
                      +-|-|.+...|.|.|   +.-|..|+.|+=++-++.|...                          ....+.+||+++||
T Consensus       200 ~~mGp~gS~T~~H~D~~~ts~w~avi~GrK~w~L~PP~~~~~~~y~~~~~s~~q~~~~~p~~~~~~~~v~l~pGE~LfIP  279 (451)
T 2yu1_A          200 CLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDCQRIELKQGYTFVIP  279 (451)
T ss_dssp             EEEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTTCCSSSCHHHHSSCCEEEEECTTCEEEEC
T ss_pred             EEEccCCCCCCeEECCCCcchhhheecceEEEEEeCCCcccccccccccccccchhhhhccccccceEEEECCCcEEEeC
Confidence            456666666777754   4568899999999999887621                          23578999999999


Q ss_pred             CCCeEEEEeCC
Q 040805          235 SGNTFYVTNTD  245 (540)
Q Consensus       235 aG~~h~~~N~g  245 (540)
                      +|..|++.|..
T Consensus       280 sGWwH~V~nle  290 (451)
T 2yu1_A          280 SGWIHAVYTPT  290 (451)
T ss_dssp             TTCEEEEECSS
T ss_pred             CCceEEEecCC
Confidence            99999999986

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*

Probab=93.39  E-value=0.19  Score=52.40  Aligned_cols=62  Identities=23%  Similarity=0.301  Sum_probs=47.5

Q ss_pred             eeeCCCccccccccC---CCeEEEEEeeEEEEEEEecCCc--------------------------eEEeeCCCcEEEEC
Q 040805          184 LIANPQTFVTPTHLD---ADAVFFVSWGQGTITVIRENNR--------------------------ESYNVKRGDIIRVP  234 (540)
Q Consensus       184 ~~l~Pggl~~Ph~~~---A~ei~yV~~G~g~ig~V~~~~~--------------------------~~~~l~~GDv~~iP  234 (540)
                      +-+-|.+...|.|.|   +.-|..|+.|+=++-++.|+..                          ....+++||+++||
T Consensus       151 l~mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtLfIP  230 (371)
T 3k3o_A          151 CLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIP  230 (371)
T ss_dssp             EEEECTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSTTGGGSCGGGTSSCCEEEEEETTCEEEEC
T ss_pred             EEEcCCCCCCCeEECCCCCceeEEEeeeEEEEEEECCCccccccccccccCCccchhhcccccCceEEEEECCCcEEEeC
Confidence            455666665666643   4557899999999988876521                          23588999999999


Q ss_pred             CCCeEEEEeCC
Q 040805          235 SGNTFYVTNTD  245 (540)
Q Consensus       235 aG~~h~~~N~g  245 (540)
                      +|..|+++|..
T Consensus       231 sGWwH~V~nle  241 (371)
T 3k3o_A          231 TGWIHAVLTPV  241 (371)
T ss_dssp             TTCEEEEEEEE
T ss_pred             CCCeEEEecCC
Confidence            99999999975

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*

Probab=93.32  E-value=0.19  Score=52.63  Aligned_cols=62  Identities=26%  Similarity=0.298  Sum_probs=47.8

Q ss_pred             eeeCCCccccccccC---CCeEEEEEeeEEEEEEEecCCc--------------------------eEEeeCCCcEEEEC
Q 040805          184 LIANPQTFVTPTHLD---ADAVFFVSWGQGTITVIRENNR--------------------------ESYNVKRGDIIRVP  234 (540)
Q Consensus       184 ~~l~Pggl~~Ph~~~---A~ei~yV~~G~g~ig~V~~~~~--------------------------~~~~l~~GDv~~iP  234 (540)
                      +-+-|.+...+.|.|   +.-|..|+.|+=+.-++.|+..                          ....+++||+++||
T Consensus       178 ~~mGp~gS~T~fHiD~~gTs~w~~vi~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtlfIP  257 (392)
T 3pua_A          178 CLICVKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRSASNHSEMFFADQVDKCYKCIVKQGQTLFIP  257 (392)
T ss_dssp             EEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSTTGGGSCGGGGSSCCEEEEEETTCEEEEC
T ss_pred             EEEeCCCCCCCEeECCCCCceeeeeccceEEEEEECCCcccccchhhcccCcchhhhhhcccccceEEEEECCCcEEeeC
Confidence            455666555666644   5678899999999988877521                          23578999999999


Q ss_pred             CCCeEEEEeCC
Q 040805          235 SGNTFYVTNTD  245 (540)
Q Consensus       235 aG~~h~~~N~g  245 (540)
                      +|..|+++|..
T Consensus       258 sGWwH~V~nle  268 (392)
T 3pua_A          258 SGWIYATLTPV  268 (392)
T ss_dssp             TTCEEEEEEEE
T ss_pred             CCceEEEecCC
Confidence            99999999985

>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}

Probab=93.24  E-value=0.026  Score=38.24  Aligned_cols=18  Identities=28%  Similarity=0.802  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHhhhcccc
Q 040805           93 EKHLRQCQRECDRQEEGG  110 (540)
Q Consensus        93 ~~~~~~c~~~c~~~~~~~  110 (540)
                      +++.+.|+++|++..++|
T Consensus        19 PWr~QECm~qCrrRrggg   36 (37)
T 2l2r_A           19 PWRVQECVSQCRRRRGGG   36 (37)
T ss_dssp             GGGHHHHHHHHHSCTTTC
T ss_pred             ccHHHHHHHHHHHhhcCC
Confidence            899999999999988764

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=93.23  E-value=0.57  Score=44.09  Aligned_cols=74  Identities=18%  Similarity=0.227  Sum_probs=53.6

Q ss_pred             cCCCccccccc--CCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccc-eEEeeeeCC--CcEEEECCCC
Q 040805          382 SKGAMAAPFYN--SRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY-HKVSSRIRT--DSAYIVPAGH  456 (540)
Q Consensus       382 ~pggm~~PH~h--~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--GDV~vVPaG~  456 (540)
                      .+|.++..|||  ..-+++++|++|+...-+|+-...                 +.+| +.....|++  +..++||+|+
T Consensus        57 ~~GvlRG~H~q~p~~q~Klv~vv~G~v~dV~vD~R~~-----------------SpTfg~~~~~~Ls~~n~~~L~IP~G~  119 (184)
T 2ixk_A           57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRG-----------------SPTFGQWVGERLSAENKRQMWIPAGF  119 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTT-----------------STTTTCEEEEEEETTTCCEEEECTTE
T ss_pred             CCCceeeEEeCCCCCcCEEEEEeCCeEEEEEEECCCC-----------------CCCCCeEEEEEeCCCcCCEEEeCCCe
Confidence            48999999999  667899999999988777776321                 1112 123345654  6899999999


Q ss_pred             eEEEEecCCCCEEEEEE
Q 040805          457 PVVTVASQNNNLEVVCF  473 (540)
Q Consensus       457 ~h~~~n~~~e~l~~v~F  473 (540)
                      +|-+.+.++. .+++.+
T Consensus       120 aHgf~~lsd~-a~~~y~  135 (184)
T 2ixk_A          120 AHGFVVLSEY-AEFLYK  135 (184)
T ss_dssp             EEEEEECSSE-EEEEEE
T ss_pred             EEEEEEcCCC-EEEEEe
Confidence            9999987554 555544

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=93.06  E-value=0.62  Score=44.59  Aligned_cols=74  Identities=18%  Similarity=0.171  Sum_probs=54.1

Q ss_pred             cCCCcccccccCC---CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccc-eEEeeeeCC--CcEEEECCC
Q 040805          382 SKGAMAAPFYNSR---STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY-HKVSSRIRT--DSAYIVPAG  455 (540)
Q Consensus       382 ~pggm~~PH~h~~---A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--GDV~vVPaG  455 (540)
                      .+|.++..|||..   -.++++|++|+...-+|+-...                 +.+| +.+...|++  +..++||+|
T Consensus        78 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~-----------------SpTfg~~~~~~Ls~~n~~~L~IP~G  140 (205)
T 3ryk_A           78 EAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKD-----------------SPTFKQWRGYILSADNHRQLLVPKG  140 (205)
T ss_dssp             STTBEEEEEEECTTSCCCEEEEEEESEEEEEEEECCTT-----------------STTTTCEEEEEEETTTCCEEEECTT
T ss_pred             CCCcEeEeEecCCCCCceEEEEEeCCeEEEEEEECCCC-----------------CCCCCeEEEEEecCCCCCEEEeCCC
Confidence            5899999999953   5789999999998888886431                 1122 233446764  789999999


Q ss_pred             CeEEEEecCCCCEEEEEE
Q 040805          456 HPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       456 ~~h~~~n~~~e~l~~v~F  473 (540)
                      ++|-+.+.++ +..++..
T Consensus       141 ~aHGF~~Lsd-~a~~~Y~  157 (205)
T 3ryk_A          141 FAHGFCTLVP-HTIVMYK  157 (205)
T ss_dssp             EEEEEEECSS-SEEEEEE
T ss_pred             ceEEEEEcCC-CEEEEEE
Confidence            9999988754 4444433

>1xru_A 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer; beta barrel, cupin, isomerase; HET: 1PE; 1.94A {Escherichia coli} SCOP: b.82.1.13 PDB: 1x8m_A

Probab=93.03  E-value=8  Score=38.63  Aligned_cols=46  Identities=26%  Similarity=0.341  Sum_probs=33.7

Q ss_pred             ccccCCCeE-EEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe
Q 040805          194 PTHLDADAV-FFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN  243 (540)
Q Consensus       194 Ph~~~A~ei-~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N  243 (540)
                      .......|+ ++.+.|.+.|.+    ...+|.|..-|.++||.|....+..
T Consensus        73 ~yfl~~rE~~iV~l~G~~~V~v----dG~~f~lg~~dalYVp~g~~~v~~a  119 (282)
T 1xru_A           73 SYFLERRELGVINIGGAGTITV----DGQCYEIGHRDALYVGKGAKEVVFA  119 (282)
T ss_dssp             SSTTTTEEEEEEECSSCEEEEE----TTEEEEECTTCEEEECTTCCCEEEE
T ss_pred             ccccCCcEEEEEEccCeEEEEE----CCEEEecCCCCEEEeCCCCeEEEEE
Confidence            344555555 566788998887    4567899999999999998644444

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=92.91  E-value=0.78  Score=43.07  Aligned_cols=74  Identities=14%  Similarity=0.144  Sum_probs=53.1

Q ss_pred             cCCCcccccccC---CCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccce-EEeeeeCC--CcEEEECCC
Q 040805          382 SKGAMAAPFYNS---RSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYH-KVSSRIRT--DSAYIVPAG  455 (540)
Q Consensus       382 ~pggm~~PH~h~---~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~--GDV~vVPaG  455 (540)
                      .+|.++..|||.   .-+++++|++|+...-+|+-...                 |.+|. .....|++  +..++||+|
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~-----------------SpTfg~~~~~~Ls~~n~~~L~IP~G  117 (183)
T 1dzr_A           55 KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKE-----------------SPTFGQWVGVNLSAENKRQLWIPEG  117 (183)
T ss_dssp             ETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTT-----------------CTTTTCEEEEEEETTTCCEEEECTT
T ss_pred             CCCeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCC-----------------CCCCCeEEEEEecCCCCCEEEeCCC
Confidence            489999999995   56799999999998777776421                 11121 23445654  689999999


Q ss_pred             CeEEEEecCCCCEEEEEE
Q 040805          456 HPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       456 ~~h~~~n~~~e~l~~v~F  473 (540)
                      ++|-+.+.++. .+++.+
T Consensus       118 ~aHgf~~lsd~-a~~~y~  134 (183)
T 1dzr_A          118 FAHGFVTLSEY-AEFLYK  134 (183)
T ss_dssp             EEEEEEECSSE-EEEEEE
T ss_pred             eEEEEEEcCCC-eEEEEE
Confidence            99999887554 444443

>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A

Probab=92.90  E-value=1  Score=42.94  Aligned_cols=74  Identities=19%  Similarity=0.254  Sum_probs=54.0

Q ss_pred             cCCCcccccccC---CCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccce-EEeeeeCC--CcEEEECCC
Q 040805          382 SKGAMAAPFYNS---RSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYH-KVSSRIRT--DSAYIVPAG  455 (540)
Q Consensus       382 ~pggm~~PH~h~---~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~--GDV~vVPaG  455 (540)
                      .+|.++..|||.   .-+++++|++|+..--+|+-.-.                 |.+|. -+...|++  +..++||+|
T Consensus        52 ~~GvlRGlH~q~~p~~q~KlV~~~~G~v~DV~VDlR~~-----------------SpTfG~w~~v~Ls~en~~~l~IP~G  114 (201)
T 4hn1_A           52 HRGALRGINYTEIPPGQAKYSVCVRGAGLDVVVDVRIG-----------------SPTFGRWEIVPMDAERNTAVYLTAG  114 (201)
T ss_dssp             CTTBEEEEEEECSSSCCCEEEEEEESEEEEEEECCCBT-----------------CTTTTCEEEEEEETTTCCEEEECTT
T ss_pred             CCCceEEEEecCCCCCceEEEEEeCCeEEEEEEECCCC-----------------CCCCCeEEEEEecCCCCCEEEeCCc
Confidence            689999999985   46899999999998888887431                 12222 23345654  789999999


Q ss_pred             CeEEEEecCCCCEEEEEE
Q 040805          456 HPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       456 ~~h~~~n~~~e~l~~v~F  473 (540)
                      ++|-+.+.++ +..++..
T Consensus       115 faHGF~~Lsd-~a~~~Y~  131 (201)
T 4hn1_A          115 LGRAFLSLTD-DATLVFL  131 (201)
T ss_dssp             CEEEEEECST-TEEEEEE
T ss_pred             ceEEEeecCC-CeEEEEe
Confidence            9999888754 4554443

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=92.89  E-value=0.68  Score=44.03  Aligned_cols=74  Identities=18%  Similarity=0.200  Sum_probs=53.8

Q ss_pred             cCCCcccccccCC---CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccc-eEEeeeeCC--CcEEEECCC
Q 040805          382 SKGAMAAPFYNSR---STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY-HKVSSRIRT--DSAYIVPAG  455 (540)
Q Consensus       382 ~pggm~~PH~h~~---A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--GDV~vVPaG  455 (540)
                      .+|.++..|||..   -.++++|++|+...-+|+-...                 +.+| +.+...|..  +..++||+|
T Consensus        73 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~-----------------SpTfG~~~~v~Ls~en~~~L~IP~G  135 (196)
T 1wlt_A           73 RKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKS-----------------SPTFGKYVKAELNEENHYMLWIPPG  135 (196)
T ss_dssp             CTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTT-----------------STTTTCEEEEEEETTTCCEEEECTT
T ss_pred             CCCcceeEEccCCCCCCceEEEEeCCEEEEEEEECCCC-----------------CCCCCeEEEEEecCCCCCEEEeCCC
Confidence            5899999999965   5799999999998777876421                 1112 234456764  789999999


Q ss_pred             CeEEEEecCCCCEEEEEE
Q 040805          456 HPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       456 ~~h~~~n~~~e~l~~v~F  473 (540)
                      ++|-+.+.++ +.+++.+
T Consensus       136 ~aHgf~~lsd-~a~~ly~  152 (196)
T 1wlt_A          136 FAHGFQALED-SIVIYFI  152 (196)
T ss_dssp             EEEEEEESSS-EEEEEEE
T ss_pred             eEEEEEEcCC-CeEEEEE
Confidence            9999998755 4444444

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*

Probab=92.89  E-value=0.37  Score=49.48  Aligned_cols=61  Identities=23%  Similarity=0.220  Sum_probs=46.0

Q ss_pred             eeCCCccccccccC---CCeEEEEEeeEEEEEEEecCCc----------------------------------------e
Q 040805          185 IANPQTFVTPTHLD---ADAVFFVSWGQGTITVIRENNR----------------------------------------E  221 (540)
Q Consensus       185 ~l~Pggl~~Ph~~~---A~ei~yV~~G~g~ig~V~~~~~----------------------------------------~  221 (540)
                      -+-|.+...|.|.|   .+-|..++.|+=++.++.|...                                        .
T Consensus       177 ~~G~~gs~t~~H~D~~~~~~~~~~v~G~K~~~L~pP~~~~~ly~~~~~~~~~~~~~~~~w~~~~~P~~~~~~~p~~~~~~  256 (336)
T 3k2o_A          177 VMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPL  256 (336)
T ss_dssp             EEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECTTSCHHHHCCCHHHHGGGTTCHHHHHHHTGGGGGSTTSCGGGCCE
T ss_pred             EECCCCccCCcccCCCccceeeEEEeeeEEEEEeCCCcchhcccCcccccCCCccchhhhhhhhCcchhhhcccccCceE
Confidence            45555544455544   3469999999999998876421                                        1


Q ss_pred             EEeeCCCcEEEECCCCeEEEEeCC
Q 040805          222 SYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       222 ~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      ...+++||+++||+|..|++.|.+
T Consensus       257 ~~~l~pGd~l~iP~gw~H~v~~~~  280 (336)
T 3k2o_A          257 EILQKPGETVFVPGGWWHVVLNLD  280 (336)
T ss_dssp             EEEECTTCEEEECTTCEEEEEESS
T ss_pred             EEEECCCCEEEeCCCCcEEEecCC
Confidence            357899999999999999999986

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*

Probab=92.85  E-value=0.32  Score=51.14  Aligned_cols=63  Identities=24%  Similarity=0.386  Sum_probs=48.3

Q ss_pred             eeeeCCCccccccccC---CCeEEEEEeeEEEEEEEecCCc--------------------------eEEeeCCCcEEEE
Q 040805          183 ILIANPQTFVTPTHLD---ADAVFFVSWGQGTITVIRENNR--------------------------ESYNVKRGDIIRV  233 (540)
Q Consensus       183 ~~~l~Pggl~~Ph~~~---A~ei~yV~~G~g~ig~V~~~~~--------------------------~~~~l~~GDv~~i  233 (540)
                      ++-|-|.+...|.|.|   +.-|..++.|+=++-++.|+..                          ....+++||+++|
T Consensus       178 ~l~mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~ly~~~~~s~~~~e~~~~~~~~~~~~v~l~pGe~lfI  257 (397)
T 3kv9_A          178 YCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFV  257 (397)
T ss_dssp             EEEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSGGGGGSCGGGGSSCCEEEEEETTCEEEE
T ss_pred             EEEEcCCCCCCCEEECCCCCceeeeecCceEEEEEeCCcccccccccccccCCCcchhhhccccCceEEEEECCCCEEEe
Confidence            3456666665665543   5568899999999998887521                          2347899999999


Q ss_pred             CCCCeEEEEeCC
Q 040805          234 PSGNTFYVTNTD  245 (540)
Q Consensus       234 PaG~~h~~~N~g  245 (540)
                      |+|..|++.|..
T Consensus       258 PsGW~H~V~nle  269 (397)
T 3kv9_A          258 PTGWIHAVLTSQ  269 (397)
T ss_dssp             CTTCEEEEEEEE
T ss_pred             CCCCeEEccCCc
Confidence            999999999985

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=92.69  E-value=1  Score=43.04  Aligned_cols=73  Identities=18%  Similarity=0.188  Sum_probs=53.2

Q ss_pred             cCCCcccccccCC---CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccc-eEEeeeeCC--CcEEEECCC
Q 040805          382 SKGAMAAPFYNSR---STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY-HKVSSRIRT--DSAYIVPAG  455 (540)
Q Consensus       382 ~pggm~~PH~h~~---A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--GDV~vVPaG  455 (540)
                      .+|-++..|||..   -+++++|++|+...-+|+-...                 |.+| +.+...|+.  +..++||.|
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~-----------------SpTfG~~~~v~Ls~~n~~~L~IP~G  117 (205)
T 1oi6_A           55 KRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVG-----------------SPTFGQWDSVLMDQQDPRAVYLPVG  117 (205)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBT-----------------CTTTTCEEEEEECSSSCCEEEECTT
T ss_pred             CCCeEeeeeccCCCCCCceEEEEeCCEEEEEEEECCCC-----------------CCCCCeEEEEEecCCCCCEEEeCCC
Confidence            5899999999965   5799999999998878876421                 1112 234456765  589999999


Q ss_pred             CeEEEEecCCCCEEEEE
Q 040805          456 HPVVTVASQNNNLEVVC  472 (540)
Q Consensus       456 ~~h~~~n~~~e~l~~v~  472 (540)
                      ++|-+.+.++. .+++.
T Consensus       118 ~aHgf~~lsd~-a~~~y  133 (205)
T 1oi6_A          118 VGHAFVALEDD-TVMSY  133 (205)
T ss_dssp             CEEEEEECSTT-EEEEE
T ss_pred             eeEEEEEccCC-eEEEE
Confidence            99999987554 44443

>3loi_A Putative uncharacterized protein; beta barrel, unknown function; 2.10A {Branchiostoma belcheri tsingtauense} SCOP: b.82.1.0 PDB: 3lzz_A*

Probab=92.19  E-value=2.3  Score=39.50  Aligned_cols=100  Identities=17%  Similarity=0.265  Sum_probs=63.5

Q ss_pred             eeeeCCCccccccccCCCeEEEEEeeEE-EEEEEecCCce-EE----eeCCCc---EEEECCCCeEEEEeCCCCccEEEE
Q 040805          183 ILIANPQTFVTPTHLDADAVFFVSWGQG-TITVIRENNRE-SY----NVKRGD---IIRVPSGNTFYVTNTDDDEKLYIV  253 (540)
Q Consensus       183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g-~ig~V~~~~~~-~~----~l~~GD---v~~iPaG~~h~~~N~g~~e~l~~v  253 (540)
                      ++-|.++....-|-.+++|+.|...|.. ++-++.+++.. +.    +|.+|+   .++||+|+-+.-.- +   ...+|
T Consensus        57 YfLL~~~~~S~~HRv~sdEiW~~~~G~pL~l~~~~~dG~~~~~~LG~d~~~Ge~~pQ~vVP~G~WqaA~~-~---~~~LV  132 (172)
T 3loi_A           57 YYLMQAGQPDPFHRVKSDETFVHNLGGSMKIHMIHPDGSYSCSILGNPLEHPEARHQVVVPRRVWFAQEV-D---GYCLA  132 (172)
T ss_dssp             EEEEETTCCEEEEECSSEEEEEEEEESCEEEEEECTTSCEEEEEESCTTTSTTCBSEEEECTTCEEEEEE-S---SEEEE
T ss_pred             EEEEcCCCCccCEEecCCEEEEEEcCCCEEEEEEcCCCceEEEEeCCCcccCCcceEEEECCCEEEEEEe-C---CcEEE
Confidence            3456777743333358999999999975 78888888653 33    567888   78999999766655 3   23333


Q ss_pred             E-EeecCCCCC-cccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHH
Q 040805          254 K-FIKSINLPG-QYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERV  302 (540)
Q Consensus       254 ~-i~~~~~~pg-~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l  302 (540)
                      . ...    || .|..|-|+            +++-|.+.|---.+.|++|
T Consensus       133 sctVa----PGF~f~dfel~------------~~~~L~~~~P~~~~~I~~l  167 (172)
T 3loi_A          133 SVLVA----PGFDFKDFSLG------------KREELIKEYPQHRDVIMRC  167 (172)
T ss_dssp             EEEEE----SCCCGGGCEEC------------CHHHHHHHCGGGHHHHHHT
T ss_pred             EEEEc----CCccchhcEEc------------CHHHHHHHCchHHHHHHHh
Confidence            3 332    44 35555553            4566666665555555554

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*

Probab=92.07  E-value=0.54  Score=48.27  Aligned_cols=82  Identities=10%  Similarity=0.076  Sum_probs=52.6

Q ss_pred             CCCcccccccCCCc-EEEEEEeceEEEEEEcCCCCC----Cccccccc-CCC----------ccccC--CccceEEeeee
Q 040805          383 KGAMAAPFYNSRST-KVAVVVAGDGYIEIACPHVSR----SSSERRHQ-GSS----------TREEG--SATYHKVSSRI  444 (540)
Q Consensus       383 pggm~~PH~h~~A~-ei~yV~~G~g~v~vv~p~~~~----~~~~~~~~-~~~----------~~~~~--~~~~~~~~~~l  444 (540)
                      +|+....|+.+..+ -|..++.|+=++.++.|....    ......+. ..+          .-+..  ....+.+...|
T Consensus       181 ~gs~t~~H~D~~~~~~~~~~v~G~K~~~L~pP~~~~~ly~~~~~~~~~~~~~~~~w~~~~~P~~~~~~~p~~~~~~~~~l  260 (336)
T 3k2o_A          181 PRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQ  260 (336)
T ss_dssp             TTCEEEEECCGGGCEEEEEEEESCEEEEEECTTSCHHHHCCCHHHHGGGTTCHHHHHHHTGGGGGSTTSCGGGCCEEEEE
T ss_pred             CCccCCcccCCCccceeeEEEeeeEEEEEeCCCcchhcccCcccccCCCccchhhhhhhhCcchhhhcccccCceEEEEE
Confidence            45667889988765 699999999999999987531    00000000 000          00000  00123455679


Q ss_pred             CCCcEEEECCCCeEEEEecC
Q 040805          445 RTDSAYIVPAGHPVVTVASQ  464 (540)
Q Consensus       445 ~~GDV~vVPaG~~h~~~n~~  464 (540)
                      .+||+++||+|+.|+..|..
T Consensus       261 ~pGd~l~iP~gw~H~v~~~~  280 (336)
T 3k2o_A          261 KPGETVFVPGGWWHVVLNLD  280 (336)
T ss_dssp             CTTCEEEECTTCEEEEEESS
T ss_pred             CCCCEEEeCCCCcEEEecCC
Confidence            99999999999999999885

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=91.74  E-value=1.6  Score=42.40  Aligned_cols=73  Identities=19%  Similarity=0.174  Sum_probs=52.6

Q ss_pred             cCCCcccccccCC---CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccc-eEEeeeeCC--CcEEEECCC
Q 040805          382 SKGAMAAPFYNSR---STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY-HKVSSRIRT--DSAYIVPAG  455 (540)
Q Consensus       382 ~pggm~~PH~h~~---A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--GDV~vVPaG  455 (540)
                      .+|-++..|||..   -+++++|++|+...-+|+-...                 +.+| +.+...|+.  +..++||+|
T Consensus        74 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~-----------------SpTfG~~~~v~Ls~~n~~~L~IP~G  136 (225)
T 1upi_A           74 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREG-----------------SPTFGRWDSVLLDDQDRRTIYVSEG  136 (225)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBT-----------------CTTTTCEEEEEEETTTCCEEEECTT
T ss_pred             CCCeEeeeeccCCCCCcceEEEEeCCeEEEEEEECCCC-----------------CCCCCcEEEEEecCCCCcEEEeCCC
Confidence            5899999999965   4799999999998777776321                 1112 233446655  589999999


Q ss_pred             CeEEEEecCCCCEEEEE
Q 040805          456 HPVVTVASQNNNLEVVC  472 (540)
Q Consensus       456 ~~h~~~n~~~e~l~~v~  472 (540)
                      ++|-+.+.++. .+++.
T Consensus       137 ~aHgF~~Lsd~-a~vly  152 (225)
T 1upi_A          137 LAHGFLALQDN-STVMY  152 (225)
T ss_dssp             CEEEEEECSSS-EEEEE
T ss_pred             eeEEEEEcCCC-EEEEE
Confidence            99999987554 44443

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=91.55  E-value=1.2  Score=42.85  Aligned_cols=73  Identities=16%  Similarity=0.165  Sum_probs=52.6

Q ss_pred             cCCCcccccccCC---CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccc-eEEeeeeCC--CcEEEECCC
Q 040805          382 SKGAMAAPFYNSR---STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY-HKVSSRIRT--DSAYIVPAG  455 (540)
Q Consensus       382 ~pggm~~PH~h~~---A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--GDV~vVPaG  455 (540)
                      .+|-++..|||..   -+++++|++|+...-+|+-...                 +.+| +.+...|+.  +..++||.|
T Consensus        63 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~-----------------SpTfG~~~~v~Ls~~n~~~L~IP~G  125 (216)
T 2c0z_A           63 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVG-----------------SPTYGCWEGTRLDDVSRRAVYLSEG  125 (216)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBT-----------------CTTTTCEEEEEEETTTCCEEEECTT
T ss_pred             CCCcEEcCEecCCCCCcceEEEEeCCeEEEEEEECCCC-----------------CCCCCeEEEEEecCCCCCEEEeCCC
Confidence            4899999999965   5799999999988777776421                 1111 233446655  579999999


Q ss_pred             CeEEEEecCCCCEEEEE
Q 040805          456 HPVVTVASQNNNLEVVC  472 (540)
Q Consensus       456 ~~h~~~n~~~e~l~~v~  472 (540)
                      ++|-+.+.++. .+++.
T Consensus       126 ~aHgF~~Lsd~-a~~ly  141 (216)
T 2c0z_A          126 IGHGFCAISDE-ATLCY  141 (216)
T ss_dssp             EEEEEEECSSE-EEEEE
T ss_pred             eeEEEEEcCCC-eEEEE
Confidence            99999987554 44443

>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A

Probab=91.44  E-value=1.6  Score=41.54  Aligned_cols=106  Identities=14%  Similarity=0.111  Sum_probs=68.8

Q ss_pred             ceeecCCceEEEeccCcccccccc---cc--ccceeeeeeeCCCccccccccC----CCeEEEEEeeEEEEEEEecCC--
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLR---GL--EKYRLGILIANPQTFVTPTHLD----ADAVFFVSWGQGTITVIRENN--  219 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~---Gi--~~~rl~~~~l~Pggl~~Ph~~~----A~ei~yV~~G~g~ig~V~~~~--  219 (540)
                      .++..+-|.+..+  |...  .|.   |+  ......+..-.+|.++-.|++.    ...+++|++|+..--+|+-..  
T Consensus        15 ~~f~D~RG~F~e~--~~~~--~f~~~~G~~~~fvQ~n~S~S~~GvlRGlH~q~~p~~q~KlV~~~~G~v~DV~VDlR~~S   90 (201)
T 4hn1_A           15 VIHSDHRGRSHEW--FRGE--SFRQAFGHDFPVAQVNVAVSHRGALRGINYTEIPPGQAKYSVCVRGAGLDVVVDVRIGS   90 (201)
T ss_dssp             CEEEETTEEEEEE--EEHH--HHHHHHSSCCCCCEEEEEEECTTBEEEEEEECSSSCCCEEEEEEESEEEEEEECCCBTC
T ss_pred             ceEeeCCcCEEEe--eeHH--HHHHhhCCCCCeeEEEEEEcCCCceEEEEecCCCCCceEEEEEeCCeEEEEEEECCCCC
Confidence            4566777777554  4432  222   22  2233333344789999888863    689999999999888887431  


Q ss_pred             -----ceEEeeCC--CcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCC
Q 040805          220 -----RESYNVKR--GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLP  262 (540)
Q Consensus       220 -----~~~~~l~~--GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~p  262 (540)
                           -....|.+  +-.++||+|+.|-+.+..++  ..++...+...+|
T Consensus        91 pTfG~w~~v~Ls~en~~~l~IP~GfaHGF~~Lsd~--a~~~Y~~t~~Y~p  138 (201)
T 4hn1_A           91 PTFGRWEIVPMDAERNTAVYLTAGLGRAFLSLTDD--ATLVFLCSSGYAP  138 (201)
T ss_dssp             TTTTCEEEEEEETTTCCEEEECTTCEEEEEECSTT--EEEEEEESSCCCG
T ss_pred             CCCCeEEEEEecCCCCCEEEeCCcceEEEeecCCC--eEEEEeCCCCcCh
Confidence                 13556654  88999999999999998743  4444334333344

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=91.30  E-value=0.45  Score=51.52  Aligned_cols=62  Identities=16%  Similarity=0.244  Sum_probs=46.6

Q ss_pred             eeeCCCccccccccC---CCeEEEEEeeEEEEEEEecCCc--------------------------eEEeeCCCcEEEEC
Q 040805          184 LIANPQTFVTPTHLD---ADAVFFVSWGQGTITVIRENNR--------------------------ESYNVKRGDIIRVP  234 (540)
Q Consensus       184 ~~l~Pggl~~Ph~~~---A~ei~yV~~G~g~ig~V~~~~~--------------------------~~~~l~~GDv~~iP  234 (540)
                      +.+-|.+...+.|.|   +.-|.+|+.|+=+.-++.|+..                          ....+++||+++||
T Consensus       300 ~lmg~~gS~Td~HiD~~gts~w~~v~~GrK~w~L~PPt~~nl~~y~~w~~s~~~~~wfgd~l~~~~~~v~l~pGEtlfIP  379 (528)
T 3pur_A          300 CLAGMAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNFAAYQAHETSPDTTTWFGDIANGAVKRVVIKEGQTLLIP  379 (528)
T ss_dssp             EEEECTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSSCCSCCGGGGTTTCCEEEEEETTCEEEEC
T ss_pred             EEEeCCCCCCCeeECCCCCceeEEEecceEEEEEeCCCccchhhhhhhccCCchhhhhcccccccEEEEEECCCCEEEec
Confidence            345555555555543   5578899999998888777521                          12478999999999


Q ss_pred             CCCeEEEEeCC
Q 040805          235 SGNTFYVTNTD  245 (540)
Q Consensus       235 aG~~h~~~N~g  245 (540)
                      +|..|+++|..
T Consensus       380 sGW~HaV~tle  390 (528)
T 3pur_A          380 AGWIHAVLTPV  390 (528)
T ss_dssp             TTCEEEEEEEE
T ss_pred             CCceEEEecCC
Confidence            99999999985

>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A

Probab=90.87  E-value=0.25  Score=49.75  Aligned_cols=68  Identities=9%  Similarity=-0.020  Sum_probs=44.4

Q ss_pred             eeCCCccccccccCCCeEEEEEeeEEEEEE--EecC------CceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEE
Q 040805          185 IANPQTFVTPTHLDADAVFFVSWGQGTITV--IREN------NRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIV  253 (540)
Q Consensus       185 ~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~--V~~~------~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v  253 (540)
                      .+.||+...||. |.-++.+...|..++-+  +++.      +...+.+++|.+|++=...+|+..|.|+...+.++
T Consensus        97 rL~PG~~I~~Hr-D~~~l~~~~~~~~RlHIPL~Tnp~~~f~vdg~~~~m~~GE~w~~d~~~~H~v~N~g~~~RIhLv  172 (290)
T 1e5r_A           97 RNLKNAIVIPHR-DFVELDREVDRYFRTFMVLEDSPLAFHSNEDTVIHMRPGEIWFLDAATVHSAVNFSEISRQSLC  172 (290)
T ss_dssp             EEEESEEEEEEC-CC--------CBCCEEEECSCCTTEEEEETTEEECCCTTEEEECCTTSCEEEEESSSSCCCEEE
T ss_pred             EeCCCCEeeCcc-CccccccccCCceEEEeeEecCCCcEEEECCEEEecCCCCEEEEcCCCeeEEEcCCCCCeEEEE
Confidence            899999988884 32233334455544433  3322      23568999999999999999999999866566554

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A

Probab=90.67  E-value=0.84  Score=48.74  Aligned_cols=87  Identities=10%  Similarity=0.072  Sum_probs=52.6

Q ss_pred             cCCCcccccccCCCc-EEEEEEeceEEEEEEcCCCCCCc---ccccccCCCcccc-CCccceEEeeeeCCCcEEEECCCC
Q 040805          382 SKGAMAAPFYNSRST-KVAVVVAGDGYIEIACPHVSRSS---SERRHQGSSTREE-GSATYHKVSSRIRTDSAYIVPAGH  456 (540)
Q Consensus       382 ~pggm~~PH~h~~A~-ei~yV~~G~g~v~vv~p~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~l~~GDV~vVPaG~  456 (540)
                      .+|+....|+.+.++ .|..|+.|+=++-++.|....-.   .+.... .+.... ....-+.+...+.+||+++||.|+
T Consensus       204 p~gS~T~~H~D~~~ts~w~avi~GrK~w~L~PP~~~~~~~y~~~~~s~-~q~~~~~p~~~~~~~~v~l~pGE~LfIPsGW  282 (451)
T 2yu1_A          204 VRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSG-SQGDIFLGDRVSDCQRIELKQGYTFVIPSGW  282 (451)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTT-CCSSSCHHHHSSCCEEEEECTTCEEEECTTC
T ss_pred             cCCCCCCeEECCCCcchhhheecceEEEEEeCCCcccccccccccccc-cchhhhhccccccceEEEECCCcEEEeCCCc
Confidence            356666778887754 58899999999999999642100   000000 000000 000002344578999999999999


Q ss_pred             eEEEEecCCCCEEE
Q 040805          457 PVVTVASQNNNLEV  470 (540)
Q Consensus       457 ~h~~~n~~~e~l~~  470 (540)
                      .|+..|.. ..+.|
T Consensus       283 wH~V~nle-dsIai  295 (451)
T 2yu1_A          283 IHAVYTPT-DTLVF  295 (451)
T ss_dssp             EEEEECSS-CEEEE
T ss_pred             eEEEecCC-CeEEE
Confidence            99999873 33444

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=90.36  E-value=0.65  Score=50.11  Aligned_cols=81  Identities=12%  Similarity=0.075  Sum_probs=50.8

Q ss_pred             cCCCcccccccCCCc-EEEEEEeceEEEEEEcCCCCCCc---ccccccCCCcccc-CCccceEEeeeeCCCcEEEECCCC
Q 040805          382 SKGAMAAPFYNSRST-KVAVVVAGDGYIEIACPHVSRSS---SERRHQGSSTREE-GSATYHKVSSRIRTDSAYIVPAGH  456 (540)
Q Consensus       382 ~pggm~~PH~h~~A~-ei~yV~~G~g~v~vv~p~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~l~~GDV~vVPaG~  456 (540)
                      .+|+....|+.+..+ .|..|+.|+=++-++.|....-.   .+.... .+.+.. .....+-+...|++||+++||+|+
T Consensus       274 ~~gS~T~~H~D~~~t~~w~~vv~G~K~w~L~PPt~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~l~pGe~lfIPsGW  352 (488)
T 3kv5_D          274 VQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSV-TQSEVFFGDKVDKCYKCVVKQGHTLFVPTGW  352 (488)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTCS-SGGGSCGGGSSSCCEEEEEETTCEEEECTTC
T ss_pred             CCCCCCCeEECCCCCceeeeccCeeEEEEEeCCcccccccccccccCC-ccchhhhcccccceEEEeeCCCCEEEeCCCc
Confidence            467778889988776 47789999999999988421000   000000 000000 000012344579999999999999


Q ss_pred             eEEEEec
Q 040805          457 PVVTVAS  463 (540)
Q Consensus       457 ~h~~~n~  463 (540)
                      .|+..|.
T Consensus       353 wH~V~nl  359 (488)
T 3kv5_D          353 IHAVLTS  359 (488)
T ss_dssp             EEEEEEE
T ss_pred             eEEeeCC
Confidence            9999987

>3m3i_A Putative uncharacterized protein; PFAM:PF06172, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP; 2.35A {Leishmania major}

Probab=90.26  E-value=5.6  Score=38.41  Aligned_cols=105  Identities=19%  Similarity=0.324  Sum_probs=64.6

Q ss_pred             eeeeCCCccccccccCCCeEEEEEeeEE-EEEEEecCC----------------------------c-eEE----eeCCC
Q 040805          183 ILIANPQTFVTPTHLDADAVFFVSWGQG-TITVIRENN----------------------------R-ESY----NVKRG  228 (540)
Q Consensus       183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g-~ig~V~~~~----------------------------~-~~~----~l~~G  228 (540)
                      ++-|.+|....-|-.+++|+.+...|.. ++-++.+++                            . +++    +|.+|
T Consensus        64 YfLL~~g~~S~~HRv~sdEiW~~h~G~pL~l~li~~dG~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~LG~d~~~G  143 (225)
T 3m3i_A           64 YFLCTPESPSHLHRLCSDETWMYHAGDPLQLHVILKDPQDEDRIAAQPPAAPQAETDTADARPKYQVYRRVLVGARVERG  143 (225)
T ss_dssp             EEEECSSSCEEEEECSSEEEEEEEEESCEEEEEEESSSTTTTC------------------CCSSCEEEEEEESSCGGGT
T ss_pred             EEEecCCCCcccEEecCCEEEEEECCCCEEEEEEcCCCcccccccccccccccccccccccccccCceEEEEeCCCccCC
Confidence            4467888753222247999999999985 677888765                            1 233    44667


Q ss_pred             c--EEEECCCCeEEEEeCCCC----ccEEEE-EEeecCCCCC-cccccccCCCCCcccccccCCHHHHHHhcCCCHHHHH
Q 040805          229 D--IIRVPSGNTFYVTNTDDD----EKLYIV-KFIKSINLPG-QYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLE  300 (540)
Q Consensus       229 D--v~~iPaG~~h~~~N~g~~----e~l~~v-~i~~~~~~pg-~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~  300 (540)
                      +  .++||+|+-+.-.-.+++    ....+| |...    || .|..|-|+            +.+-|.+.|.--.+.|+
T Consensus       144 e~pQ~vVP~G~WqaA~~~~~~~~~~~~~sLVsCtVa----PGFdF~DFel~------------~~~~L~~~~P~~~~~I~  207 (225)
T 3m3i_A          144 ELLQYTVPGGAIFGSSVAADGADGQAGYSLVSCIVS----PGFDYRDFEIF------------TQAQLMELYPQHEAVIK  207 (225)
T ss_dssp             CBSEEEECTTCEEEEECCSSSTTCSSSCEEEEEEEE----SCCCGGGCEEC------------BHHHHHHHCGGGHHHHH
T ss_pred             ceeEEEeCCCEEEEEEECCCCcCcCCCeEEEEEEEc----CCccchhcEec------------CHHHHHHHCchHHHHHH
Confidence            6  579999997777655432    123333 3332    44 35555553            46666666655556666


Q ss_pred             HHh
Q 040805          301 RVL  303 (540)
Q Consensus       301 ~l~  303 (540)
                      +|-
T Consensus       208 ~lt  210 (225)
T 3m3i_A          208 QMA  210 (225)
T ss_dssp             HHS
T ss_pred             Hhc
Confidence            664

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=89.88  E-value=1.1  Score=47.72  Aligned_cols=64  Identities=17%  Similarity=0.313  Sum_probs=43.4

Q ss_pred             cceeeeeeeC--CCc-cccccccCCCeEEEEEeeEEEEEEEecCCceE-EeeCCCcEEEECCCCeEEEEeC
Q 040805          178 KYRLGILIAN--PQT-FVTPTHLDADAVFFVSWGQGTITVIRENNRES-YNVKRGDIIRVPSGNTFYVTNT  244 (540)
Q Consensus       178 ~~rl~~~~l~--Pgg-l~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~-~~l~~GDv~~iPaG~~h~~~N~  244 (540)
                      .+.+..+++.  +++ ..++ -.+...|+.|++|+|+++.  .+.... ..|++||+++||++...-+.+.
T Consensus       356 eF~v~~~~~~~~~~~~~~~~-~~~~~~illv~~G~g~i~~--~~~~~~~~~l~~G~~~fvpa~~~~~i~g~  423 (440)
T 1pmi_A          356 EFSVLQTIFDKSKGGKQVIE-GLNGPSIVIATNGKGTIQI--TGDDSTKQKIDTGYVFFVAPGSSIELTAD  423 (440)
T ss_dssp             SCEEEEEECCTTTCCEEEEC-CCSSCEEEEEEESEEEEEE--TTCGGGCEEEETTCEEEECTTCCEEEEEC
T ss_pred             eEEEEEEEecCCCCceeEEe-cCCCcEEEEEEeCeEEEEe--CCcccceEEeccCCEEEEeCCCcEEEEEe
Confidence            3455555777  442 2222 2357789999999998875  222122 6899999999999976667765

>3rcq_A Aspartyl/asparaginyl beta-hydroxylase; structural genomics, structural genomics consortium, SGC, oxidoreductase, human; HET: OGA; 2.05A {Homo sapiens}

Probab=89.44  E-value=1.5  Score=41.71  Aligned_cols=75  Identities=12%  Similarity=0.191  Sum_probs=52.0

Q ss_pred             eeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecC-------CceEEeeCCCcEEEECCCCeEEEEeCCCCccEEE
Q 040805          180 RLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIREN-------NRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYI  252 (540)
Q Consensus       180 rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~-------~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~  252 (540)
                      .+.+..|.||+...||.-...-.+     +..++++.|.       +.++...+.|.++++-.-..|+..|.++.  -++
T Consensus       103 ~a~fs~L~pG~~I~pH~g~~n~~l-----R~HL~L~~p~~~~~i~V~~~~~~w~eGe~~~fDds~~Hev~N~~d~--~Rv  175 (197)
T 3rcq_A          103 QIKYSIMHPGTHVWPHTGPTNCRL-----RMHLGLVIPKEGCKIRCANETKTWEEGKVLIFDDSFEHEVWQDASS--FRL  175 (197)
T ss_dssp             EEEEEEECTTEEEEEECCSCTTEE-----EEEEEEECCSSSEEEEETTEEECCCBTCEEEECTTSCEEEEECSSS--CEE
T ss_pred             eEEEEEeCCCCCcCCeeCCCCCeE-----EEEEEEEeCCCCcEEEECCEEEEeeCCcEEEEcCCeEEEEEECCCC--CEE
Confidence            467788999999999984322111     3445555554       33567899999999999999999998743  445


Q ss_pred             EEEeecCCCC
Q 040805          253 VKFIKSINLP  262 (540)
Q Consensus       253 v~i~~~~~~p  262 (540)
                      +.++| ...|
T Consensus       176 vL~~D-~~rP  184 (197)
T 3rcq_A          176 IFIVD-VWHP  184 (197)
T ss_dssp             EEEEE-EECT
T ss_pred             EEEEe-eeCC
Confidence            54553 4444

>1xe7_A YML079WP, hypothetical 22.5 kDa protein in TUB1-CPR3 intergenic region; jelly roll motif, cupin superfamily, structural genomics; HET: GUN; 1.75A {Saccharomyces cerevisiae} SCOP: b.82.1.16 PDB: 1xe8_A*

Probab=89.44  E-value=4.2  Score=38.79  Aligned_cols=102  Identities=16%  Similarity=0.204  Sum_probs=61.4

Q ss_pred             eeeeCCCcc-ccccccCCCeEEEEEeeEEEEEEEecCCce-EE----eeCCCc--EEEECCCCeEEEEeCCCCcc---EE
Q 040805          183 ILIANPQTF-VTPTHLDADAVFFVSWGQGTITVIRENNRE-SY----NVKRGD--IIRVPSGNTFYVTNTDDDEK---LY  251 (540)
Q Consensus       183 ~~~l~Pggl-~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~-~~----~l~~GD--v~~iPaG~~h~~~N~g~~e~---l~  251 (540)
                      ++-|.++.. ..-|-.+++||.|...|.+..-++.+++.. +.    +|.+|+  -++||+|+-+.-....++.-   .-
T Consensus        83 YfLL~~~~~~S~wHRv~sdEiW~~h~G~p~~~li~~dg~~~~~~LG~dl~~Ge~pQ~vVPaG~WqaA~~~~~~~~~~~tL  162 (203)
T 1xe7_A           83 YYLLTPDSPIGKFHKNINRIIHILQRGKGQYVLVYPDGQVKSFKVGFDYKNGEVSQWVVPGGVFKASFLLPNEEFDNGFL  162 (203)
T ss_dssp             EEEEBTTBCEEEEEEESSCEEEEEEEECEEEEEECTTSCEEEEEESSCGGGTCBSEEEECTTCEEEEEECCCTTTTTCEE
T ss_pred             EEEEcCCCCcccceeeCCCEEEEEEcCCccEEEEcCCCCEEEEEeCCCcccCcccEEEEcCCEEEEeEecCCCCcccceE
Confidence            345777763 333335899999999998877677777553 33    455566  48999998877655421222   22


Q ss_pred             EEEEeecCCCCC-cccccccCCCCCcccccccCCHH-HHHHhcCCCHHHHHHH
Q 040805          252 IVKFIKSINLPG-QYEAFYGAGGENPESFLRAFSWE-ILESAFKTKRDSLERV  302 (540)
Q Consensus       252 ~v~i~~~~~~pg-~~~~f~LaG~~~~~s~l~~f~~e-vLa~Af~v~~~~v~~l  302 (540)
                      +=|...    || .|..|-|+            +.+ -|.+.|  +.+.++.|
T Consensus       163 VgCtVa----PGFdF~dFel~------------~~~~~L~~~~--P~~~~~~l  197 (203)
T 1xe7_A          163 ISEVVV----PGFDFEDHTFL------------KGEDELKHLV--GPEKAAEL  197 (203)
T ss_dssp             EEEEES----SCCCGGGEEEC------------CHHHHHHHHH--CHHHHHHT
T ss_pred             EEEEec----CCccchhcEec------------CCcHHHHHHC--CHHHHHHH
Confidence            333332    55 45666654            344 555555  45666654

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=89.29  E-value=1.1  Score=47.70  Aligned_cols=82  Identities=9%  Similarity=0.097  Sum_probs=51.3

Q ss_pred             cCCCcccccccCCCcE-EEEEEeceEEEEEEcCCCCCCc---ccccccCCCccc-cCCccceEEeeeeCCCcEEEECCCC
Q 040805          382 SKGAMAAPFYNSRSTK-VAVVVAGDGYIEIACPHVSRSS---SERRHQGSSTRE-EGSATYHKVSSRIRTDSAYIVPAGH  456 (540)
Q Consensus       382 ~pggm~~PH~h~~A~e-i~yV~~G~g~v~vv~p~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~l~~GDV~vVPaG~  456 (540)
                      .+|+....|+.+.++- |..|+.|+=++-++.|....-.   .+.... .+.+. -.....+-+...+++||+++||+|+
T Consensus       239 ~~gS~T~~HiD~~~ts~w~~vi~GrK~w~L~PPt~~nl~~~~~~~~s~-~~~~~~~~~~~~~~~~v~l~pGetlfIPsGW  317 (447)
T 3kv4_A          239 VRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSS-NQNEMFFGDQVDKCYKCSVKQGQTLFIPTGW  317 (447)
T ss_dssp             CTTEEEEEECCGGGCEEEEEEEESEEEEEEECCCHHHHHHHHHHHTCS-SGGGSCGGGGSSCCEEEEEETTCEEEECTTC
T ss_pred             CCCCCCCeeECCCCCceeEEEeeeEEEEEEeCCCcccccchhhcccCc-chhhhhccccccceEEEEECCCcEEecCCCC
Confidence            4566777888887774 7889999999998888531000   000000 00000 0000012344579999999999999


Q ss_pred             eEEEEecC
Q 040805          457 PVVTVASQ  464 (540)
Q Consensus       457 ~h~~~n~~  464 (540)
                      .|+..|..
T Consensus       318 wH~V~nle  325 (447)
T 3kv4_A          318 IHAVLTPV  325 (447)
T ss_dssp             EEEEEESS
T ss_pred             eEEEecCC
Confidence            99999983

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A

Probab=88.93  E-value=1.2  Score=47.34  Aligned_cols=86  Identities=13%  Similarity=0.073  Sum_probs=57.9

Q ss_pred             CceEEEecCCCCCCCccccceEEEEEEcCCCc-ccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccC
Q 040805          355 FGELFEADSNDFRPLEDLDITVSYANISKGAM-AAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEG  433 (540)
Q Consensus       355 ~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm-~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~  433 (540)
                      .|....+. +.-+.++. |+++.....+. +| -.-.+|.++++++|+-+|++++.-..                     
T Consensus       140 ~Gl~tl~g-ngD~~~~~-G~aI~~y~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEf---------------------  195 (471)
T 1eyb_A          140 SGLHTLCG-AGDIKSNN-GLAIHIFLCNT-SMENRCFYNSDGDFLIVPQKGNLLIYTEF---------------------  195 (471)
T ss_dssp             TTEEEEEE-ESCGGGTC-CEEEEEEEECS-CCCSEEEEESSEEEEEEEEESCEEEEETT---------------------
T ss_pred             cchhheec-cCCccccc-ceEEEEEeCCC-CcccceeecCCCCEEEEEEeCCEEEEEec---------------------
Confidence            45443333 33343432 56665555544 56 56678999999999999999987333                     


Q ss_pred             CccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEE
Q 040805          434 SATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVC  472 (540)
Q Consensus       434 ~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~  472 (540)
                          -++  .+++||++|||+|..+.+.-.+  +.....
T Consensus       196 ----G~L--~v~pgei~VIPRGi~frv~l~~--p~Rgyi  226 (471)
T 1eyb_A          196 ----GKM--LVQPNEICVIQRGMRFSIDVFE--ETRGYI  226 (471)
T ss_dssp             ----EEE--EECTTEEEEECTTCCEEEECSS--SEEEEE
T ss_pred             ----ccE--EeccCCEEEECCccEEEEeeCC--CceEEE
Confidence                234  5899999999999999876553  554433

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A

Probab=88.71  E-value=1.2  Score=47.48  Aligned_cols=45  Identities=18%  Similarity=0.166  Sum_probs=36.4

Q ss_pred             cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          197 LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       197 ~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      .|.++++|+.+|++.|..    .--...|++||+++||+|+.+.+.=.+
T Consensus       176 aDGD~Livpq~G~l~i~T----EfG~L~v~pgei~VIPRGi~frv~l~~  220 (471)
T 1eyb_A          176 SDGDFLIVPQKGNLLIYT----EFGKMLVQPNEICVIQRGMRFSIDVFE  220 (471)
T ss_dssp             SSEEEEEEEEESCEEEEE----TTEEEEECTTEEEEECTTCCEEEECSS
T ss_pred             CCCCEEEEEEeCCEEEEE----ecccEEeccCCEEEECCccEEEEeeCC
Confidence            368899999999997765    222467999999999999999886554

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*

Probab=88.64  E-value=1.1  Score=46.99  Aligned_cols=85  Identities=13%  Similarity=0.099  Sum_probs=52.0

Q ss_pred             EEEEcC-CCcccccccCCCcE-EEEEEeceEEEEEEcCCCCCC---cccccccCCCcccc-CCccceEEeeeeCCCcEEE
Q 040805          378 YANISK-GAMAAPFYNSRSTK-VAVVVAGDGYIEIACPHVSRS---SSERRHQGSSTREE-GSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       378 ~~~L~p-ggm~~PH~h~~A~e-i~yV~~G~g~v~vv~p~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~l~~GDV~v  451 (540)
                      ++-|.| |+....|+.+..+- |..++.|+=++-++.|....-   ..+.... .+.+.. .....+-+...+.+||+++
T Consensus       178 ~l~mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~ly~~~~~s~-~~~e~~~~~~~~~~~~v~l~pGe~lf  256 (397)
T 3kv9_A          178 YCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSV-TQSEVFFGDKVDKCYKCVVKQGHTLF  256 (397)
T ss_dssp             EEEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSG-GGGGSCGGGGSSCCEEEEEETTCEEE
T ss_pred             EEEEcCCCCCCCEEECCCCCceeeeecCceEEEEEeCCcccccccccccccCC-CcchhhhccccCceEEEEECCCCEEE
Confidence            344554 55666699988774 789999999999998853210   0000000 000000 0000123445799999999


Q ss_pred             ECCCCeEEEEec
Q 040805          452 VPAGHPVVTVAS  463 (540)
Q Consensus       452 VPaG~~h~~~n~  463 (540)
                      ||+|+.|+..|.
T Consensus       257 IPsGW~H~V~nl  268 (397)
T 3kv9_A          257 VPTGWIHAVLTS  268 (397)
T ss_dssp             ECTTCEEEEEEE
T ss_pred             eCCCCeEEccCC
Confidence            999999999886

>2cmy_B Beta trypsin, veronica hederifolia trypsin inhibitor; acyl-enzyme intermediate, serine protease inhibitor, zymogen protease, digestion; 2.25A {Veronica hederifolia} SCOP: g.2.4.1

Probab=88.57  E-value=0.13  Score=33.66  Aligned_cols=31  Identities=35%  Similarity=0.734  Sum_probs=20.2

Q ss_pred             CCchhHHHHHHHHHhhccCHHHHHHHHHHHHHH
Q 040805           26 KDPELKQCKHQCRARQQYDEKQKEQCARTCEEY   58 (540)
Q Consensus        26 ~dp~~~~c~~~c~~~~~~~~~~~~~c~~~c~~~   58 (540)
                      +|||  |||--|-.|+-.+.+-.+.|...||+.
T Consensus         2 tdpe--qckvmcyaqrhsspellrrcldnceke   32 (34)
T 2cmy_B            2 TDPE--QCKVMCYAQRHSSPELLRRCLDNCEKE   32 (34)
T ss_dssp             -------CHHHHHHBC--CCHHHHHHHHHC---
T ss_pred             CChH--HhhHHHHHhhcCCHHHHHHHHHhhhhc
Confidence            5665  899999999999999999999999863

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=88.48  E-value=0.98  Score=47.36  Aligned_cols=59  Identities=10%  Similarity=0.142  Sum_probs=41.1

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEE
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVT  242 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~  242 (540)
                      .+.+..+++.++...+  -.+...|+.|++|++++..   + ..+..|++||+++||++..-+..
T Consensus       323 ~F~v~~~~l~~~~~~~--~~~~~~il~v~~G~~~l~~---~-~~~~~l~~G~~~fvpa~~~~~~i  381 (394)
T 2wfp_A          323 DFAFSLHDLALQETSI--GQHSAAILFCVEGEAVLRK---D-EQRLVLKPGESAFIGADESPVNA  381 (394)
T ss_dssp             SCEEEEEECCSSCEEE--CCSSCEEEEEEEEEEEEEE---T-TEEEEECTTCEEEECGGGCCEEE
T ss_pred             EEEEEEEEEcCCeEEe--cCCCcEEEEEEeceEEEEE---C-CeEEEEccCcEEEEeCCCceEEE
Confidence            3445555777553322  2357799999999998764   2 25689999999999998644433

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*

Probab=88.46  E-value=0.61  Score=48.57  Aligned_cols=81  Identities=9%  Similarity=0.104  Sum_probs=51.5

Q ss_pred             cCCCcccccccCCCcE-EEEEEeceEEEEEEcCCCCCCc---ccccccCCCccc-cCCccceEEeeeeCCCcEEEECCCC
Q 040805          382 SKGAMAAPFYNSRSTK-VAVVVAGDGYIEIACPHVSRSS---SERRHQGSSTRE-EGSATYHKVSSRIRTDSAYIVPAGH  456 (540)
Q Consensus       382 ~pggm~~PH~h~~A~e-i~yV~~G~g~v~vv~p~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~l~~GDV~vVPaG~  456 (540)
                      .+|+....|+.+..+- |..|+.|+=++-++.|....-.   .+.... .+.+. -.....+-+...+++||+++||+|+
T Consensus       155 p~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~~y~~~~~s~-~~~e~~~~~~~~~~~ev~l~pGEtLfIPsGW  233 (371)
T 3k3o_A          155 VRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSS-NQNEMFFGDQVDKCYKCSVKQGQTLFIPTGW  233 (371)
T ss_dssp             CTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTST-TGGGSCGGGTSSCCEEEEEETTCEEEECTTC
T ss_pred             CCCCCCCeEECCCCCceeEEEeeeEEEEEEECCCccccccccccccCC-ccchhhcccccCceEEEEECCCcEEEeCCCC
Confidence            5677788899888875 6789999999998888532000   000000 00000 0000012344579999999999999


Q ss_pred             eEEEEec
Q 040805          457 PVVTVAS  463 (540)
Q Consensus       457 ~h~~~n~  463 (540)
                      .|+..|.
T Consensus       234 wH~V~nl  240 (371)
T 3k3o_A          234 IHAVLTP  240 (371)
T ss_dssp             EEEEEEE
T ss_pred             eEEEecC
Confidence            9999986

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=88.44  E-value=1.3  Score=44.07  Aligned_cols=78  Identities=14%  Similarity=0.166  Sum_probs=52.1

Q ss_pred             ccceeeeeeeCCCccc---cccccCC---C------eEEEE-E---eeEEEEEEEecC--CceEEeeCCCcEEEECCCCe
Q 040805          177 EKYRLGILIANPQTFV---TPTHLDA---D------AVFFV-S---WGQGTITVIREN--NRESYNVKRGDIIRVPSGNT  238 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~---~Ph~~~A---~------ei~yV-~---~G~g~ig~V~~~--~~~~~~l~~GDv~~iPaG~~  238 (540)
                      ..+-++++ +.|+|.-   +||.|+.   +      |++|. +   +|-|.--+-.++  ..+++.|+-||++.||.|. 
T Consensus       151 ~~LlvgEv-~tpgG~WSSyPpHkHd~~~~~~e~~lEE~YYf~~~~~~gf~~q~vyt~d~~~de~~~V~~~d~VlvP~Gy-  228 (270)
T 2qjv_A          151 DSLLVVEV-YTNAGATSSWPAHXHDTAVEGQETYLEETYYHRFNPPQGFCLQRVYTDDRSLDECMAVYNRDVVXVPXGY-  228 (270)
T ss_dssp             SSCEEEEE-EECTTCEESCSCEECEEEETTTEEECEEEEEEEEESTTCEEEEEEECTTSSSEEEEEEETTCEEEESSSB-
T ss_pred             ceEEEEEE-EcCCCccccCCCcccccccCcccccceeEEEEECCCCCCEEEEEEeCCCCCCceEEEEECCCEEecCCCc-
Confidence            34434444 8899865   8888874   4      88876 3   355543333333  2367999999999999999 


Q ss_pred             EEEEeCCCCccEEEEEEee
Q 040805          239 FYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       239 h~~~N~g~~e~l~~v~i~~  257 (540)
                      |-.....+. .+.+|.+.-
T Consensus       229 Hp~~a~pGy-~~YylwvMa  246 (270)
T 2qjv_A          229 HPVATIAGY-DNYYLNVMA  246 (270)
T ss_dssp             CCEEECTTC-EEEEEEEEE
T ss_pred             CCCcCCCCc-ccEEEEEEE
Confidence            987655323 566777663

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}

Probab=87.86  E-value=0.94  Score=44.75  Aligned_cols=81  Identities=17%  Similarity=0.257  Sum_probs=59.8

Q ss_pred             CCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECC
Q 040805          156 QHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPS  235 (540)
Q Consensus       156 e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPa  235 (540)
                      ..|..|.|. +.+.     |.+.++|   .+.|+=-.+|--+.|+--+||++|+..+|        ...+.+|+.+++|+
T Consensus        77 ~~gs~RlLs-~~d~-----GaSTl~V---~fpp~~~~P~Gi~~ad~E~fVL~G~i~~G--------~~~l~~h~Y~f~Pa  139 (303)
T 2qdr_A           77 APGSRRLLT-WHDS-----GASTSRV---VLPPKFEAPSGIFTADLEIFVIKGAIQLG--------EWQLNKHSYSFIPA  139 (303)
T ss_dssp             CCEEEEEEE-ECTT-----SCEEEEE---EECTTCEECCBEESSCEEEEEEESEEEET--------TEEECTTEEEEECT
T ss_pred             Cccceeecc-cCCC-----CcceEEE---EecCCCCCCCcccccceEEEEEEeEEEeC--------CEEecCCceEEecC
Confidence            468888874 2222     7777888   88888777888888888899999998665        26799999999999


Q ss_pred             CC--eEEEEeCCCCccEEEEEE
Q 040805          236 GN--TFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       236 G~--~h~~~N~g~~e~l~~v~i  255 (540)
                      |+  .-|.. .| +++..+|.+
T Consensus       140 GV~~~~~kv-~~-~~g~~iL~f  159 (303)
T 2qdr_A          140 GVRIGSWKV-LG-GEEAEILWM  159 (303)
T ss_dssp             TCCBCCEEE-ET-TSCEEEEEE
T ss_pred             CCccCceee-cC-CCCcEEEEE
Confidence            97  33333 24 356777755

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*

Probab=87.78  E-value=0.76  Score=48.16  Aligned_cols=81  Identities=12%  Similarity=0.119  Sum_probs=51.1

Q ss_pred             cCCCcccccccCCCc-EEEEEEeceEEEEEEcCCCCCCc---ccccccCCCcccc-CCccceEEeeeeCCCcEEEECCCC
Q 040805          382 SKGAMAAPFYNSRST-KVAVVVAGDGYIEIACPHVSRSS---SERRHQGSSTREE-GSATYHKVSSRIRTDSAYIVPAGH  456 (540)
Q Consensus       382 ~pggm~~PH~h~~A~-ei~yV~~G~g~v~vv~p~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~l~~GDV~vVPaG~  456 (540)
                      .+|+....|+.+..+ .|..|+.|+=++-++.|....-.   .+.... .+.+.- .....+-+...+++||+++||+|+
T Consensus       182 p~gS~T~fHiD~~gTs~w~~vi~GrK~w~L~PPt~~nl~~y~~~~~s~-~~~e~~~~~~~~~~~ev~l~pGEtlfIPsGW  260 (392)
T 3pua_A          182 VKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRSAS-NHSEMFFADQVDKCYKCIVKQGQTLFIPSGW  260 (392)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHST-TGGGSCGGGGSSCCEEEEEETTCEEEECTTC
T ss_pred             CCCCCCCEeECCCCCceeeeeccceEEEEEECCCcccccchhhcccCc-chhhhhhcccccceEEEEECCCcEEeeCCCc
Confidence            567788889988876 48899999999988888532100   000000 000000 000002244579999999999999


Q ss_pred             eEEEEec
Q 040805          457 PVVTVAS  463 (540)
Q Consensus       457 ~h~~~n~  463 (540)
                      .|+..|.
T Consensus       261 wH~V~nl  267 (392)
T 3pua_A          261 IYATLTP  267 (392)
T ss_dssp             EEEEEEE
T ss_pred             eEEEecC
Confidence            9999987

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=87.56  E-value=5.2  Score=38.26  Aligned_cols=86  Identities=6%  Similarity=0.051  Sum_probs=60.6

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      .+++..+...||--..+|=|. +.-++.|++|....++.......       .    -...+   .  ...|.+|||.++
T Consensus        72 ~f~v~~l~W~PGq~spiHDH~-swg~~~Vl~G~l~e~~y~~~~~g-------~----~~~~~---~--~~~l~~G~v~~~  134 (211)
T 3uss_A           72 RFSVVSFVWGPGQITPVHDHR-VWGLIGMLRGAEYSQPYAFDAGG-------R----PHPSG---A--RRRLEPGEVEAL  134 (211)
T ss_dssp             SCEEEEEEECTTCBCCSBCCS-SCEEEEEEESCEEEEEEEECTTS-------C----EEECS---C--CEEECTTCEEEE
T ss_pred             CEEEEEEEECCCCcCCCCCCC-eeEEEEeeeceEEEEEeeeCCCC-------C----ccccc---c--eEEecCCCEEEE
Confidence            477888999999999999998 89999999999988875532110       0    00000   0  136999999999


Q ss_pred             CCC--CeEEEEec-CCCCEEEEEEEecC
Q 040805          453 PAG--HPVVTVAS-QNNNLEVVCFEINA  477 (540)
Q Consensus       453 PaG--~~h~~~n~-~~e~l~~v~F~~~a  477 (540)
                      +.+  .+|-+.|. +++.  .|++++.+
T Consensus       135 ~p~~g~IH~V~N~~~d~~--avSLHvYg  160 (211)
T 3uss_A          135 SPRIGDVHQVSNAFSDRT--SISIHVYG  160 (211)
T ss_dssp             BTTTBCCEEEEESCSSSC--EEEEEEES
T ss_pred             CCCCCCEEEEccCCCCCC--EEEEEEcC
Confidence            987  89998875 3443  34444443

>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22

Probab=87.13  E-value=2.5  Score=35.43  Aligned_cols=65  Identities=12%  Similarity=0.085  Sum_probs=49.5

Q ss_pred             eeeCCCccccccc-cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          184 LIANPQTFVTPTH-LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       184 ~~l~Pggl~~Ph~-~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      -.|.||..   ++ ..++|+.-|++|...+-+  |+...-..+++||.|.||++.-+-+.-.   +...++|.+
T Consensus        28 GVm~pGey---tF~T~~~E~M~vvsG~~~V~l--pg~~ew~~~~aGesF~Vpans~F~l~v~---~~~~YlC~y   93 (94)
T 2oyz_A           28 GVMLPGEY---TFGTQAPERMTVVKGALVVKR--VGEADWTTYSSGESFDVEGNSSFELQVK---DATAYLCEY   93 (94)
T ss_dssp             EEECSEEE---EEEESSCEEEEEEESEEEEEE--TTCSSCEEEETTCEEEECSSEEEEEEES---SCEEEEEEC
T ss_pred             EEEeceEE---EEcCCCeEEEEEEEeEEEEEc--CCCCcCEEECCCCEEEECCCCEEEEEEc---ccEeEEEEc
Confidence            34556542   12 479999999999997776  7766678899999999999999888774   356677654

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=86.87  E-value=1.3  Score=45.02  Aligned_cols=58  Identities=14%  Similarity=0.165  Sum_probs=39.8

Q ss_pred             ceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEE
Q 040805          179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVT  242 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~  242 (540)
                      +.+..+.+.++. ... ..+...|+.|++|++++..    +..++.|++||+++||+++.-+..
T Consensus       251 F~~~~~~~~~~~-~~~-~~~~~~il~v~~G~~~l~~----~~~~~~l~~G~~~~vpa~~~~~~i  308 (319)
T 1qwr_A          251 FSVYKWDINGEA-EMA-QDESFLICSVIEGSGLLKY----EDKTCPLKKGDHFILPAQMPDFTI  308 (319)
T ss_dssp             CEEEEEEEEEEE-EEC-CCSSCEEEEEEEEEEEEEE----TTEEEEEETTCEEEECTTCCCEEE
T ss_pred             EEEEEEEECCce-EEc-cCCccEEEEEEcCeEEEEE----CCEEEEEcCCcEEEEeCCCceEEE
Confidence            334444665432 221 1367889999999998865    245679999999999998744443

>1znp_A Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0, structural genomics, PSI, protein struc initiative; 2.50A {Agrobacterium tumefaciens str} SCOP: b.82.1.16

Probab=86.80  E-value=6.8  Score=35.71  Aligned_cols=107  Identities=14%  Similarity=0.175  Sum_probs=62.8

Q ss_pred             cCCceEEEeccCccccccccccccceeeeeeeCCCcccccccc-CCCeEEEEEeeE-EEEEEEecCCc-eEE----eeCC
Q 040805          155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHL-DADAVFFVSWGQ-GTITVIRENNR-ESY----NVKR  227 (540)
Q Consensus       155 ~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~-g~ig~V~~~~~-~~~----~l~~  227 (540)
                      .|+|.++..  |......-|  ...-.-++-|.++....-|-. +++||.|...|. .++.++.+++. ++.    +|.+
T Consensus        20 PEGG~yrEt--~Rs~~~~~R--~~~TaIYfLL~~g~~S~wHRv~~sdEiW~~h~G~pL~l~~~~~dg~~~~~~LG~d~~~   95 (154)
T 1znp_A           20 PEGGFYHQT--FRDKAGGER--GHSTAIYYLLEKGVRSHWHRVTDAVEVWHYYAGAPIALHLSQDGREVQTFTLGPAILE   95 (154)
T ss_dssp             TTSSEEEEE--EECSSSTTT--CSCEEEEEEEESSCCEEEEEETTSCEEEEEEEESCEEEEEESSSSCCEEEEESSCTTT
T ss_pred             CCCccEEEE--EeCCCCCCC--cceeEEEEEecCCCCCcceeccCCCEEEEeECCCCEEEEEEcCCCcEEEEEeCCCccc
Confidence            478888876  321111111  111222335667765444446 899999999997 66667777654 333    5567


Q ss_pred             CcE--EEECCCCeEEEEeCCCCccEEEEEEeecCCCCC-cccccccC
Q 040805          228 GDI--IRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPG-QYEAFYGA  271 (540)
Q Consensus       228 GDv--~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg-~~~~f~La  271 (540)
                      |++  ++||+|+-+.-...|   ...+|...  + .|| .|..|-|+
T Consensus        96 Ge~pQ~vVP~G~WqaA~~~g---~~~LVsCt--V-aPGF~f~dFel~  136 (154)
T 1znp_A           96 GERPQVIVPANCWQSAESLG---DFTLVGCT--V-SPGFAFSSFVMA  136 (154)
T ss_dssp             TEESEEEECTTCEEEEEESS---SEEEEEEE--E-SSCCCGGGEEEC
T ss_pred             CcccEEEEcCCEEEEeeECC---CeEEEEEE--e-cCCCcccccEec
Confidence            875  899999988776554   23344332  1 255 46666665

>3loi_A Putative uncharacterized protein; beta barrel, unknown function; 2.10A {Branchiostoma belcheri tsingtauense} SCOP: b.82.1.0 PDB: 3lzz_A*

Probab=86.57  E-value=17  Score=33.61  Aligned_cols=113  Identities=13%  Similarity=0.063  Sum_probs=74.2

Q ss_pred             ceEEEEEEcCCCcccccccCCCcEEEEEEece-EEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCc---E
Q 040805          374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGD-GYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDS---A  449 (540)
Q Consensus       374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~-g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD---V  449 (540)
                      .++.+.-|.+|....-|- -+|+||-+.-.|. ..+-++.|++..                  .-.++-.++..|+   .
T Consensus        53 ~TaIYfLL~~~~~S~~HR-v~sdEiW~~~~G~pL~l~~~~~dG~~------------------~~~~LG~d~~~Ge~~pQ  113 (172)
T 3loi_A           53 LTMIYYLMQAGQPDPFHR-VKSDETFVHNLGGSMKIHMIHPDGSY------------------SCSILGNPLEHPEARHQ  113 (172)
T ss_dssp             CEEEEEEEETTCCEEEEE-CSSEEEEEEEEESCEEEEEECTTSCE------------------EEEEESCTTTSTTCBSE
T ss_pred             ceEEEEEEcCCCCccCEE-ecCCEEEEEEcCCCEEEEEEcCCCce------------------EEEEeCCCcccCCcceE
Confidence            567778889998666565 4789988888886 589999998631                  0023334667888   7


Q ss_pred             EEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCCHHHHHHHcCCCHHHHHHhhc
Q 040805          450 YIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFG  516 (540)
Q Consensus       450 ~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e~v~kl~~  516 (540)
                      +|||+|+......   .+..+|+=-+.   |.+.| +    -|.-.+++-|...|.--.+.|++|-.
T Consensus       114 ~vVP~G~WqaA~~---~~~~LVsctVa---PGF~f-~----dfel~~~~~L~~~~P~~~~~I~~lt~  169 (172)
T 3loi_A          114 VVVPRRVWFAQEV---DGYCLASVLVA---PGFDF-K----DFSLGKREELIKEYPQHRDVIMRCTS  169 (172)
T ss_dssp             EEECTTCEEEEEE---SSEEEEEEEEE---SCCCG-G----GCEECCHHHHHHHCGGGHHHHHHTSC
T ss_pred             EEECCCEEEEEEe---CCcEEEEEEEc---CCccc-h----hcEEcCHHHHHHHCchHHHHHHHhcc
Confidence            8999999776554   34555543233   22221 1    12224677778888777777887754

>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A

Probab=86.50  E-value=2.2  Score=40.79  Aligned_cols=96  Identities=10%  Similarity=0.072  Sum_probs=54.0

Q ss_pred             EEEEEcCCCcccccccCCCcE--EEEEEe--ceEEEEEEcCCCCCC-cccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          377 SYANISKGAMAAPFYNSRSTK--VAVVVA--GDGYIEIACPHVSRS-SSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       377 ~~~~L~pggm~~PH~h~~A~e--i~yV~~--G~g~v~vv~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      =.....+|+...+|.|+++.-  +.||.-  +.|.+.+..|....- .....+.   .......  ......-++||+++
T Consensus       106 W~~~~~~G~~~~~H~H~~~~lSgV~Yl~~p~~~G~L~f~~p~~~~~~~~~~~~~---~~~~~~~--~~~~i~P~~G~lvl  180 (216)
T 2rg4_A          106 WINILPEGGVHGSHIHPHSVISGTTYVAMPEGTSALKLEDPRLPFMMAAPTRRK---GAREELR--TFRSVAPKVGDVLL  180 (216)
T ss_dssp             EEEEECTTCCEEEECCTTCSEEEEEEEECCSCSCCEEEECTTGGGCSSSCCCCC---CSCGGGC--SEEEECCCTTEEEE
T ss_pred             EEEEcCCCCcccCccCCCCeEEEEEEEECCCCCccEEEeCCccccccccCcccc---cCcccCC--CeeEecCCCCeEEE
Confidence            345667899999999998754  445543  345566666532100 0000000   0000001  11234679999999


Q ss_pred             ECCCCeEEEEec-CCCCEEEEEEEecC
Q 040805          452 VPAGHPVVTVAS-QNNNLEVVCFEINA  477 (540)
Q Consensus       452 VPaG~~h~~~n~-~~e~l~~v~F~~~a  477 (540)
                      +|.-++|..... ++++-.-|+|++..
T Consensus       181 FpS~l~H~V~p~~~~~~RiSIsFN~~~  207 (216)
T 2rg4_A          181 WESWLRHEVPMNMAEEDRISVSFNYAW  207 (216)
T ss_dssp             EETTSCEEECCCCSSSCEEEEEEEEEC
T ss_pred             ECCCCEEeccCCCCCCCEEEEEEEeec
Confidence            999999987643 34445557886654

>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0

Probab=84.40  E-value=8.5  Score=33.14  Aligned_cols=69  Identities=16%  Similarity=0.185  Sum_probs=50.6

Q ss_pred             eeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          183 ILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      +-.|.||.-..-.-..++|+.-|+.|...+-+  |+...-..+.+|+.|.||+..-+-+.-.   +...++|.+
T Consensus        41 lGVm~PGe~~YtF~T~~~E~MevvsG~l~V~L--pg~~eW~~~~aGesF~VpanssF~lkv~---~~~~Y~C~y  109 (111)
T 3hqx_A           41 LGVILPTEQPLTFETHVPERMEIISGECRVKI--ADSTESELFRAGQSFYVPGNSLFKIETD---EVLDYVCHL  109 (111)
T ss_dssp             EEEECCCSSCEEEECSSCEEEEEEESEEEEEE--TTCSSCEEEETTCEEEECTTCEEEEECS---SCEEEEEEE
T ss_pred             EEEEeccccceEEcCCCcEEEEEEEeEEEEEc--CCcccCEEeCCCCEEEECCCCcEEEEEC---cceeEEEEc
Confidence            33456664101111479999999999997776  7766667899999999999999988774   367777754

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=84.32  E-value=1.9  Score=46.73  Aligned_cols=78  Identities=13%  Similarity=0.167  Sum_probs=49.9

Q ss_pred             cCCCcccccccCCCc-EEEEEEeceEEEEEEcCCCCCC---cccccccCCCcccc----CCccceEEeeeeCCCcEEEEC
Q 040805          382 SKGAMAAPFYNSRST-KVAVVVAGDGYIEIACPHVSRS---SSERRHQGSSTREE----GSATYHKVSSRIRTDSAYIVP  453 (540)
Q Consensus       382 ~pggm~~PH~h~~A~-ei~yV~~G~g~v~vv~p~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~l~~GDV~vVP  453 (540)
                      ..|+....|..+.++ .|..|+.|+=++-++.|....-   ..+....  ....-    -...+  +...+++||+++||
T Consensus       304 ~~gS~Td~HiD~~gts~w~~v~~GrK~w~L~PPt~~nl~~y~~w~~s~--~~~~wfgd~l~~~~--~~v~l~pGEtlfIP  379 (528)
T 3pur_A          304 MAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNFAAYQAHETSP--DTTTWFGDIANGAV--KRVVIKEGQTLLIP  379 (528)
T ss_dssp             CTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSS--CCSCCGGGGTTTCC--EEEEEETTCEEEEC
T ss_pred             CCCCCCCeeECCCCCceeEEEecceEEEEEeCCCccchhhhhhhccCC--chhhhhcccccccE--EEEEECCCCEEEec
Confidence            467777888887776 4889999999998888742100   0000000  00000    00112  23479999999999


Q ss_pred             CCCeEEEEec
Q 040805          454 AGHPVVTVAS  463 (540)
Q Consensus       454 aG~~h~~~n~  463 (540)
                      +|+.|+.+|.
T Consensus       380 sGW~HaV~tl  389 (528)
T 3pur_A          380 AGWIHAVLTP  389 (528)
T ss_dssp             TTCEEEEEEE
T ss_pred             CCceEEEecC
Confidence            9999999987

>2lqx_A Trypsin inhibitor BWI-2C; helical hairpin, hydrolase inhibitor; NMR {Fagopyrum esculentum}

Probab=84.60  E-value=0.2  Score=34.12  Aligned_cols=38  Identities=26%  Similarity=0.684  Sum_probs=32.7

Q ss_pred             CchHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHhhh
Q 040805           90 EPAEKHLRQCQRECDRQEEGGQQRALCRFRCQEKYRREK  128 (540)
Q Consensus        90 d~~~~~~~~c~~~c~~~~~~~~q~~~c~~rc~~~~~~~~  128 (540)
                      .| ++++..|+.-|.--.|.-.--..|...|++++++++
T Consensus         3 kp-qqeleecqnvcrmkrwstemvhrcekkceekferqq   40 (41)
T 2lqx_A            3 KP-QQELEECQNVCRMKRWSTEMVHRCEKKCEEKFERQQ   40 (41)
Confidence            35 889999999999888876777889999999999875

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=83.55  E-value=4.9  Score=35.49  Aligned_cols=74  Identities=9%  Similarity=-0.068  Sum_probs=50.4

Q ss_pred             CCCccccc---c-cCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeE
Q 040805          383 KGAMAAPF---Y-NSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPV  458 (540)
Q Consensus       383 pggm~~PH---~-h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h  458 (540)
                      |++++.+|   . ++..-..+-|++|+..+-.....+..               .-.  +.  .-+.+|+..+||++..|
T Consensus        23 P~~ll~~H~~~~Tk~Gtwg~l~VL~G~L~f~~~~e~g~~---------------~~~--~~--~l~~~~~~~~i~Pq~wH   83 (127)
T 3bb6_A           23 PAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSA---------------EPD--QV--ILIEAGQFAVFPPEKWH   83 (127)
T ss_dssp             CGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCS---------------SCS--EE--EEEEBTBEEECCSSCEE
T ss_pred             hHHHHhhccccCCCCCEEEEEEEEEeEEEEEEECCCCCc---------------cee--EE--EEeCCCCceEECCCCcE
Confidence            56778888   4 33333578899999999877765520               000  11  13679999999999999


Q ss_pred             EEEecCCCCEEE-EEEEec
Q 040805          459 VTVASQNNNLEV-VCFEIN  476 (540)
Q Consensus       459 ~~~n~~~e~l~~-v~F~~~  476 (540)
                      .+..-.+ ++.| |.|...
T Consensus        84 ~Ve~lsd-d~~f~leFyc~  101 (127)
T 3bb6_A           84 NIEAMTD-DTYFNIDFFVA  101 (127)
T ss_dssp             EEEESST-TCEEEEEEEEC
T ss_pred             EEEEcCC-CEEEEEEEEeC
Confidence            9987433 6776 777443

>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A

Probab=83.19  E-value=2.3  Score=42.73  Aligned_cols=85  Identities=9%  Similarity=0.086  Sum_probs=53.6

Q ss_pred             ceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805          374 ITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP  453 (540)
Q Consensus       374 isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP  453 (540)
                      +.+.++.|.|||...||-.+  -+..+...|..|+-|.-...+. ....-..            +.  ..+++|.++++=
T Consensus        91 l~~vRlrL~PG~~I~~HrD~--~~l~~~~~~~~RlHIPL~Tnp~-~~f~vdg------------~~--~~m~~GE~w~~d  153 (290)
T 1e5r_A           91 LQMARSRNLKNAIVIPHRDF--VELDREVDRYFRTFMVLEDSPL-AFHSNED------------TV--IHMRPGEIWFLD  153 (290)
T ss_dssp             EEEEEEEEEESEEEEEECCC----------CBCCEEEECSCCTT-EEEEETT------------EE--ECCCTTEEEECC
T ss_pred             hheEEEEeCCCCEeeCccCc--cccccccCCceEEEeeEecCCC-cEEEECC------------EE--EecCCCCEEEEc
Confidence            36787899999999999644  3455455777666555443321 0000000            23  478999999999


Q ss_pred             CCCeEEEEecCCCCEEEEEEEe
Q 040805          454 AGHPVVTVASQNNNLEVVCFEI  475 (540)
Q Consensus       454 aG~~h~~~n~~~e~l~~v~F~~  475 (540)
                      ...+|+..|.++.+-..+++|.
T Consensus       154 ~~~~H~v~N~g~~~RIhLv~D~  175 (290)
T 1e5r_A          154 AATVHSAVNFSEISRQSLCVDF  175 (290)
T ss_dssp             TTSCEEEEESSSSCCCEEEEEE
T ss_pred             CCCeeEEEcCCCCCeEEEEEEe
Confidence            9999999998887766666765

>3rcq_A Aspartyl/asparaginyl beta-hydroxylase; structural genomics, structural genomics consortium, SGC, oxidoreductase, human; HET: OGA; 2.05A {Homo sapiens}

Probab=82.38  E-value=8.9  Score=36.27  Aligned_cols=79  Identities=8%  Similarity=0.090  Sum_probs=57.4

Q ss_pred             eEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCC-CCCCcccccccCCCccccCCccceEEeeeeCCCcEEEEC
Q 040805          375 TVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPH-VSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVP  453 (540)
Q Consensus       375 sv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVP  453 (540)
                      ++.+..|.||+-..||..+....+      +..++++.|. +.   .-+-+.            +.  ...++|.++++=
T Consensus       103 ~a~fs~L~pG~~I~pH~g~~n~~l------R~HL~L~~p~~~~---~i~V~~------------~~--~~w~eGe~~~fD  159 (197)
T 3rcq_A          103 QIKYSIMHPGTHVWPHTGPTNCRL------RMHLGLVIPKEGC---KIRCAN------------ET--KTWEEGKVLIFD  159 (197)
T ss_dssp             EEEEEEECTTEEEEEECCSCTTEE------EEEEEEECCSSSE---EEEETT------------EE--ECCCBTCEEEEC
T ss_pred             eEEEEEeCCCCCcCCeeCCCCCeE------EEEEEEEeCCCCc---EEEECC------------EE--EEeeCCcEEEEc
Confidence            588899999999999998765444      3455677765 21   000001            12  367899999999


Q ss_pred             CCCeEEEEecCCCCEEEEEEEec
Q 040805          454 AGHPVVTVASQNNNLEVVCFEIN  476 (540)
Q Consensus       454 aG~~h~~~n~~~e~l~~v~F~~~  476 (540)
                      -.+.|+..|.++++-.++.+++-
T Consensus       160 ds~~Hev~N~~d~~RvvL~~D~~  182 (197)
T 3rcq_A          160 DSFEHEVWQDASSFRLIFIVDVW  182 (197)
T ss_dssp             TTSCEEEEECSSSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCEEEEEEeee
Confidence            99999999988888777777665

>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*

Probab=82.11  E-value=6.5  Score=38.31  Aligned_cols=84  Identities=13%  Similarity=0.106  Sum_probs=54.5

Q ss_pred             cceeeeeeeCCCcccccccc-CCCeEEEEEee-EEEEEEEecC----------------CceE------EeeCCCcEEEE
Q 040805          178 KYRLGILIANPQTFVTPTHL-DADAVFFVSWG-QGTITVIREN----------------NRES------YNVKRGDIIRV  233 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G-~g~ig~V~~~----------------~~~~------~~l~~GDv~~i  233 (540)
                      .|--=++.+.||-..+-|+| .-.|=+++.-| ...|.+...+                ...+      ..|.+|+-|.|
T Consensus       105 ~YaeK~Li~~~gQ~~P~H~H~~K~EdiinRgGG~L~v~Ly~~~~~~~~~~~~v~V~~DG~~~~~~aG~~i~L~PGESiTl  184 (246)
T 3kmh_A          105 CYAEKIMHVRDAQVTPMHFHWRKREDIINRGGGNLIVELWNADSNEQTADSDITVVIDGCRQKHTAGSQLRLSPGESICL  184 (246)
T ss_dssp             CEEEEEEEECBTCEEEEEEESSCCEEEEEEEESCEEEEEEEBCTTSSBCCSCEEEEETTEEEEECTTCEEEECTTCEEEE
T ss_pred             cceeeEeeccCCCCCCcccCCCccccEEecCCCeEEEEEEecCCCccccCCCeEEecCCeEEEeCCCCEEEECCCCeEec
Confidence            45555678899988777766 44555666666 4444544433                1111      37899999999


Q ss_pred             CCCCeEEEEeCCCCccEEEEEEeecCCCC
Q 040805          234 PSGNTFYVTNTDDDEKLYIVKFIKSINLP  262 (540)
Q Consensus       234 PaG~~h~~~N~g~~e~l~~v~i~~~~~~p  262 (540)
                      |+|+-||+..-++.-++ +|.=+.+.|.+
T Consensus       185 ~Pg~~H~F~ae~g~G~v-ligEVSt~NDD  212 (246)
T 3kmh_A          185 PPGLYHSFWAEAGFGDV-LVGEVSSVNDD  212 (246)
T ss_dssp             CTTEEEEEEECTTSCCE-EEEEEEECCCT
T ss_pred             CCCCEEEEEecCCCccE-EEEEcccCcCC
Confidence            99999999997532234 44445456654

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=81.32  E-value=2.6  Score=42.41  Aligned_cols=56  Identities=18%  Similarity=0.251  Sum_probs=38.4

Q ss_pred             ceeeeeeeCCCccccccccCCC-eEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEE
Q 040805          179 YRLGILIANPQTFVTPTHLDAD-AVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVT  242 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~Ph~~~A~-ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~  242 (540)
                      +.+..+.+.+ ......  +.. .|+.|++| |++..    +..+..|++||+++|||+..-+..
T Consensus       230 F~v~~~~~~~-~~~~~~--~~~~~il~v~~G-~~i~~----~~~~~~l~~G~~~~ipa~~~~~~i  286 (300)
T 1zx5_A          230 FGLEVVDVTG-TAEIKT--GGVMNILYAAEG-YFILR----GKETADLHRGYSCLVPASTDSFTV  286 (300)
T ss_dssp             EEEEEEEEEE-EEEEEC--CSBCEEEEEEES-CEEEE----SSSEEEECTTCEEEECTTCCEEEE
T ss_pred             EEEEEEEECC-ceEEec--CCceEEEEEccc-EEEEe----CCeEEEEccceEEEEeCCCceEEE
Confidence            4444446653 332322  666 89999999 98775    234578999999999999855544

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=81.00  E-value=8.2  Score=34.05  Aligned_cols=59  Identities=8%  Similarity=0.085  Sum_probs=44.0

Q ss_pred             CCCcccccc---ccCCC--eEEEEEeeEEEEEEEecCCc----eEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          187 NPQTFVTPT---HLDAD--AVFFVSWGQGTITVIRENNR----ESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       187 ~Pggl~~Ph---~~~A~--ei~yV~~G~g~ig~V~~~~~----~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      -|.+++.+|   ...+.  ..+-|++|+..+-+.+..+.    +..-+.+|+..+||++..|.+.-..
T Consensus        22 lP~~ll~~H~~~~Tk~Gtwg~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~~~i~Pq~wH~Ve~ls   89 (127)
T 3bb6_A           22 APAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMT   89 (127)
T ss_dssp             SCGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESS
T ss_pred             ChHHHHhhccccCCCCCEEEEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCceEECCCCcEEEEEcC
Confidence            477776677   43444  45789999998877665443    3445789999999999999999744

>1znp_A Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0, structural genomics, PSI, protein struc initiative; 2.50A {Agrobacterium tumefaciens str} SCOP: b.82.1.16

Probab=80.98  E-value=22  Score=32.27  Aligned_cols=98  Identities=14%  Similarity=0.033  Sum_probs=61.0

Q ss_pred             CCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEece-EEEEEEcCCCCCCcccccccCCCcccc
Q 040805          354 NFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGD-GYIEIACPHVSRSSSERRHQGSSTREE  432 (540)
Q Consensus       354 ~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~-g~v~vv~p~~~~~~~~~~~~~~~~~~~  432 (540)
                      ++|++++........-+. -.++.+.-|.+|....-|=..+|+||-+.-.|. ..+-++.+++..               
T Consensus        21 EGG~yrEt~Rs~~~~~R~-~~TaIYfLL~~g~~S~wHRv~~sdEiW~~h~G~pL~l~~~~~dg~~---------------   84 (154)
T 1znp_A           21 EGGFYHQTFRDKAGGERG-HSTAIYYLLEKGVRSHWHRVTDAVEVWHYYAGAPIALHLSQDGREV---------------   84 (154)
T ss_dssp             TSSEEEEEEECSSSTTTC-SCEEEEEEEESSCCEEEEEETTSCEEEEEEEESCEEEEEESSSSCC---------------
T ss_pred             CCccEEEEEeCCCCCCCc-ceeEEEEEecCCCCCcceeccCCCEEEEeECCCCEEEEEEcCCCcE---------------
Confidence            666666655443222222 245666668888865544423699988888886 677788886631               


Q ss_pred             CCccceEEeeeeCCCcE--EEECCCCeEEEEecCCCCEEEEE
Q 040805          433 GSATYHKVSSRIRTDSA--YIVPAGHPVVTVASQNNNLEVVC  472 (540)
Q Consensus       433 ~~~~~~~~~~~l~~GDV--~vVPaG~~h~~~n~~~e~l~~v~  472 (540)
                         .-.++-.++..|++  +|||+|+...-...+  +..+|+
T Consensus        85 ---~~~~LG~d~~~Ge~pQ~vVP~G~WqaA~~~g--~~~LVs  121 (154)
T 1znp_A           85 ---QTFTLGPAILEGERPQVIVPANCWQSAESLG--DFTLVG  121 (154)
T ss_dssp             ---EEEEESSCTTTTEESEEEECTTCEEEEEESS--SEEEEE
T ss_pred             ---EEEEeCCCcccCcccEEEEcCCEEEEeeECC--CeEEEE
Confidence               00234456677875  899999988765443  455554

>3m3i_A Putative uncharacterized protein; PFAM:PF06172, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP; 2.35A {Leishmania major}

Probab=80.69  E-value=23  Score=34.18  Aligned_cols=153  Identities=11%  Similarity=0.094  Sum_probs=80.5

Q ss_pred             CCceEEEecCCCCC------CCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceE-EEEEEcCCCCCCcc--cccc
Q 040805          354 NFGELFEADSNDFR------PLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDG-YIEIACPHVSRSSS--ERRH  424 (540)
Q Consensus       354 ~~G~~~~~~~~~~p------~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g-~v~vv~p~~~~~~~--~~~~  424 (540)
                      ++|++.+.......      .-+ .-.+..+.-|.+|....-|- -+|+||-+.-.|.. .+-++.+++.....  -..+
T Consensus        35 EGG~yrEt~Rs~~~v~~~~~~~R-~~~TaIYfLL~~g~~S~~HR-v~sdEiW~~h~G~pL~l~li~~dG~~~~~~~~~~~  112 (225)
T 3m3i_A           35 EGGYYSEVVRSAHKVDNEEGNRR-HAYTTIYFLCTPESPSHLHR-LCSDETWMYHAGDPLQLHVILKDPQDEDRIAAQPP  112 (225)
T ss_dssp             TSSEEEEEEECSSEEECTTSCEE-ESCEEEEEEECSSSCEEEEE-CSSEEEEEEEEESCEEEEEEESSSTTTTC------
T ss_pred             CCceEEEEEECCCcccCCCCCCc-ccceeEEEEecCCCCcccEE-ecCCEEEEEECCCCEEEEEEcCCCccccccccccc
Confidence            56666555543321      111 23567778889999754444 47889888888874 78888887610000  0000


Q ss_pred             cCCCcccc-C-----CccceE--EeeeeCCCc--EEEECCCCeEEEEecCCC-----CEEEEEEEecCCCCccccccccc
Q 040805          425 QGSSTREE-G-----SATYHK--VSSRIRTDS--AYIVPAGHPVVTVASQNN-----NLEVVCFEINAEGNIRFPLAGRN  489 (540)
Q Consensus       425 ~~~~~~~~-~-----~~~~~~--~~~~l~~GD--V~vVPaG~~h~~~n~~~e-----~l~~v~F~~~a~~~~~~~LAG~~  489 (540)
                      ..-+.+.+ .     ...|++  +-.+|..|+  .+|||+|+.....-.++.     +..+|+=-+.   |.+.| +   
T Consensus       113 ~~P~~~~~~~~~~~~~~~~~~~~LG~d~~~Ge~pQ~vVP~G~WqaA~~~~~~~~~~~~~sLVsCtVa---PGFdF-~---  185 (225)
T 3m3i_A          113 AAPQAETDTADARPKYQVYRRVLVGARVERGELLQYTVPGGAIFGSSVAADGADGQAGYSLVSCIVS---PGFDY-R---  185 (225)
T ss_dssp             ------------CCSSCEEEEEEESSCGGGTCBSEEEECTTCEEEEECCSSSTTCSSSCEEEEEEEE---SCCCG-G---
T ss_pred             ccccccccccccccccCceEEEEeCCCccCCceeEEEeCCCEEEEEEECCCCcCcCCCeEEEEEEEc---CCccc-h---
Confidence            00000000 0     001222  333456676  579999998766543322     4555543223   22221 1   


Q ss_pred             cccccCCHHHHHHHcCCCHHHHHHhhc
Q 040805          490 KIFKVMESEAKELAFNTRADEVERVFG  516 (540)
Q Consensus       490 svl~~~~~evla~AF~vs~e~v~kl~~  516 (540)
                       -|.-++++-|...|.--++.|++|-.
T Consensus       186 -DFel~~~~~L~~~~P~~~~~I~~lt~  211 (225)
T 3m3i_A          186 -DFEIFTQAQLMELYPQHEAVIKQMAY  211 (225)
T ss_dssp             -GCEECBHHHHHHHCGGGHHHHHHHSB
T ss_pred             -hcEecCHHHHHHHCchHHHHHHHhch
Confidence             12224677777788777888888864

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=80.63  E-value=7.4  Score=38.27  Aligned_cols=70  Identities=10%  Similarity=0.112  Sum_probs=52.3

Q ss_pred             EEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCC-
Q 040805          378 YANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGH-  456 (540)
Q Consensus       378 ~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~-  456 (540)
                      ...+.||+-+.||=|.+-..|.||++|+..-.  ++.+.                        ...|++|||-++.||. 
T Consensus        68 ~~~~~pg~gf~~HPHrg~EtvTyvl~G~~~H~--DS~Gn------------------------~~~i~~GdvQ~MtAG~G  121 (256)
T 2vec_A           68 QEVLAPGAAFQPRTYPKVDILNVILDGEAEYR--DSEGN------------------------HVQASAGEALLLSTQPG  121 (256)
T ss_dssp             EEEECTTCEEEEECCSSEEEEEEEEESEEEEE--ETTSC------------------------EEEEETTEEEEECCCTT
T ss_pred             ccccCCCCccCCcCCCCcEEEEEEEeeEEEEE--eCCCC------------------------EEEECCCeEEEEECCCC
Confidence            46678888889999977777999999987665  33331                        1368999999998876 


Q ss_pred             -eEEEEecC-CCCEEEEEE
Q 040805          457 -PVVTVASQ-NNNLEVVCF  473 (540)
Q Consensus       457 -~h~~~n~~-~e~l~~v~F  473 (540)
                       .|..+|.. ++++.++-+
T Consensus       122 I~HsE~n~~~~~~l~~lQl  140 (256)
T 2vec_A          122 VSYSEHNLSKDKPLTRMQL  140 (256)
T ss_dssp             CCEEEEECCSSSCEEEEEE
T ss_pred             eEEEEEECCCCceEEEEEE
Confidence             78888853 467877544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	540
d1uika1	203	b.82.1.2 (A:148-350) Seed storage 7S protein {Soyb	7e-50
d1uika1	203	b.82.1.2 (A:148-350) Seed storage 7S protein {Soyb	8e-14
d2phla1	200	b.82.1.2 (A:11-210) Seed storage 7S protein {Frenc	6e-45
d2phla1	200	b.82.1.2 (A:11-210) Seed storage 7S protein {Frenc	2e-17
d1dgwa_	178	b.82.1.2 (A:) Seed storage 7S protein {Jack bean (	2e-43
d1dgwa_	178	b.82.1.2 (A:) Seed storage 7S protein {Jack bean (	5e-16
d1uija1	170	b.82.1.2 (A:6-175) Seed storage 7S protein {Soybea	1e-42
d1uija1	170	b.82.1.2 (A:6-175) Seed storage 7S protein {Soybea	4e-14
d1uika2	185	b.82.1.2 (A:351-535) Seed storage 7S protein {Soyb	2e-36
d1uika2	185	b.82.1.2 (A:351-535) Seed storage 7S protein {Soyb	4e-15
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	8e-33
d2phla2	162	b.82.1.2 (A:220-381) Seed storage 7S protein {Fren	5e-32
d2phla2	162	b.82.1.2 (A:220-381) Seed storage 7S protein {Fren	3e-23
g1dgw.1	168	b.82.1.2 (X:,Y:) Seed storage 7S protein {Jack bea	8e-29
g1dgw.1	168	b.82.1.2 (X:,Y:) Seed storage 7S protein {Jack bea	3e-17
d1fxza2	174	b.82.1.2 (A:297-470) Seed storage 7S protein {Soyb	2e-24
d1fxza2	174	b.82.1.2 (A:297-470) Seed storage 7S protein {Soyb	5e-14
d1od5a2	173	b.82.1.2 (A:321-493) Seed storage 7S protein {Soyb	7e-20
d1od5a2	173	b.82.1.2 (A:321-493) Seed storage 7S protein {Soyb	4e-13
d1od5a1	245	b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea	1e-18
d1od5a1	245	b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea	5e-15
d1fxza1	239	b.82.1.2 (A:10-248) Seed storage 7S protein {Soybe	2e-17
d1fxza1	239	b.82.1.2 (A:10-248) Seed storage 7S protein {Soybe	4e-17
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	2e-13
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	2e-05
d2et1a1	201	b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare	7e-10
d2et1a1	201	b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare	3e-08
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	2e-07
d1lr5a_	160	b.82.1.2 (A:) Auxin binding protein {Maize (Zea ma	3e-06
d2phda1	351	b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Ps	8e-05
d3bu7a1	355	b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Si	3e-04
d2pyta1	128	b.82.1.24 (A:100-227) Ethanolamine utilization pro	7e-04
d1zrra1	179	b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebs	0.002
d1x82a_	190	b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {	0.003
d2d40a1	308	b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Es	0.004

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 203

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score =  168 bits (427), Expect = 7e-50
 Identities = 64/192 (33%), Positives = 114/192 (59%), Gaps = 11/192 (5%)

Query: 150 SSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQ 209
            +   +Q+G V  L +F +RS+ L+ L  YR+    + P T + P H DAD +  +  G 
Sbjct: 11  QTLFKNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHHADADYLIVILNGT 70

Query: 210 GTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFY 269
             +T++  ++R+SYN++ GD +RVP+G T+YV N D+DE L ++     +N PG++E+F+
Sbjct: 71  AILTLVNNDDRDSYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPVNKPGRFESFF 130

Query: 270 GAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQD-----------QGAMVKASKQQ 318
            +  +  +S+L+ FS  ILE+++ TK + + +VLF ++           +  +V+ SK+Q
Sbjct: 131 LSSTQAQQSYLQGFSKNILEASYDTKFEEINKVLFGREEGQQQGEERLQESVIVEISKKQ 190

Query: 319 IRALSRSQEGPS 330
           IR LS+  +  S
Sbjct: 191 IRELSKHAKSSS 202

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 203

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 68.0 bits (166), Expect = 8e-14
 Identities = 28/202 (13%), Positives = 63/202 (31%), Gaps = 34/202 (16%)

Query: 342 FNLFGKRPSHSNNFGELFEADSNDFRP--LEDL-DITVSYANISKGAMAAPFYNSRSTKV 398
           FN    +    N +G +      + R   L++L D  +   N     +  P + + +  +
Sbjct: 5   FNSKRFQTLFKNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHH-ADADYL 63

Query: 399 AVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPV 458
            V++ G   + +                            + S  +++  A  VPAG   
Sbjct: 64  IVILNGTAILTLVNND-----------------------DRDSYNLQSGDALRVPAGTTY 100

Query: 459 VTVA-SQNNNLEVVCFEI--NAEGNIRFPLAGRNK----IFKVMESEAKELAFNTRADEV 511
             V    + NL ++   I  N  G          +      +       E +++T+ +E+
Sbjct: 101 YVVNPDNDENLRMITLAIPVNKPGRFESFFLSSTQAQQSYLQGFSKNILEASYDTKFEEI 160

Query: 512 ERVFGNQDQDWFFKGPSRWHQQ 533
            +V   +++             
Sbjct: 161 NKVLFGREEGQQQGEERLQESV 182

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 200

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score =  155 bits (392), Expect = 6e-45
 Identities = 58/186 (31%), Positives = 101/186 (54%), Gaps = 10/186 (5%)

Query: 151 SRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQG 210
           +   +Q+G +  L +F Q+SK L+ LE YRL    + P+T + P   DA+ +  V  G  
Sbjct: 14  TLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQADAELLLVVRSGSA 73

Query: 211 TITVIRENNRESY------NVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQ 264
            + +++ ++R  Y      N    D  ++P+G  FY+ N D  E L I++    +N P  
Sbjct: 74  ILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQI 133

Query: 265 YEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQ---QDQGAMVKASKQQIRA 321
           +E F+ +  E  +S+L+ FS  ILE++F +K + + RVLF+   Q +G +V    +QI+ 
Sbjct: 134 HE-FFLSSTEAQQSYLQEFSKHILEASFNSKFEEINRVLFEEEGQQEGVIVNIDSEQIKE 192

Query: 322 LSRSQE 327
           LS+  +
Sbjct: 193 LSKHAK 198

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 200

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 78.8 bits (194), Expect = 2e-17
 Identities = 32/215 (14%), Positives = 66/215 (30%), Gaps = 34/215 (15%)

Query: 333 PFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRP--LEDL-DITVSYANISKGAMAAP 389
           PF   S  ++          N +G +      D +   L++L D  +         +  P
Sbjct: 3   PFYFNSDNSW-----NTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLP 57

Query: 390 FYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSA 449
              + +  + VV +G   + +  P   R                   +   S        
Sbjct: 58  QQ-ADAELLLVVRSGSAILVLVKPDDRREY-----------------FFLTSDNPIFSDH 99

Query: 450 YIVPAGHPVVTV-ASQNNNLEVVCFE--INAEGNIRFPLAG---RNKIFKVMESEAKELA 503
             +PAG     V      +L ++     +N      F L+    +    +       E +
Sbjct: 100 QKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQEFSKHILEAS 159

Query: 504 FNTRADEVERVFGNQDQDWFFKGPSRWHQQQQGRA 538
           FN++ +E+ RV   ++     +G       +Q + 
Sbjct: 160 FNSKFEEINRVLFEEEGQ--QEGVIVNIDSEQIKE 192

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Length = 178

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

 Score =  150 bits (380), Expect = 2e-43
 Identities = 51/169 (30%), Positives = 95/169 (56%), Gaps = 1/169 (0%)

Query: 147 DEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVS 206
           ++  +   +QHG +  L +F + ++ L  L  YR+    + P T + P H D+D +  V 
Sbjct: 9   NKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVL 68

Query: 207 WGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYE 266
            GQ  + ++  + R++Y + +GD I++ +G  FY+ N D+++ L I+KF  +   PG  E
Sbjct: 69  EGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVE 128

Query: 267 AFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQ-GAMVKA 314
            F+ +  +   S+L AFS   LE+++ +  D +E+ L Q++Q G +VK 
Sbjct: 129 DFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKM 177

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Length = 178

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

 Score = 73.8 bits (181), Expect = 5e-16
 Identities = 31/189 (16%), Positives = 57/189 (30%), Gaps = 34/189 (17%)

Query: 342 FNLFGKRPSHSNNFGELFEADSNDFRP--LEDL-DITVSYANISKGAMAAPFYNSRSTKV 398
           F          N  G L      +     LE+L D  V         +  P + S S  +
Sbjct: 6   FRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHH-SDSDLL 64

Query: 399 AVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPV 458
            +V+ G   + +  P                         + + ++    A  + AG P 
Sbjct: 65  VLVLEGQAILVLVNPD-----------------------GRDTYKLDQGDAIKIQAGTPF 101

Query: 459 VTVA-SQNNNLEVVCFEI--NAEGNIRFPLAGRNK----IFKVMESEAKELAFNTRADEV 511
             +    N NL ++ F I     G +        K              E ++++  DE+
Sbjct: 102 YLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEI 161

Query: 512 ERVFGNQDQ 520
           E+    ++Q
Sbjct: 162 EQTLLQEEQ 170

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Length = 170

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

 Score =  148 bits (374), Expect = 1e-42
 Identities = 53/161 (32%), Positives = 94/161 (58%)

Query: 144 EEGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVF 203
              +   +   +Q+GR+  L +F +RS  L  L  YR+    + P T + P H DAD + 
Sbjct: 9   RSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLL 68

Query: 204 FVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPG 263
           FV  G+  +T++  ++R+SYN+  GD  R+P+G T+Y+ N  D + L ++     +N PG
Sbjct: 69  FVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPG 128

Query: 264 QYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLF 304
           +Y+ F+ +  +  +S+L+ FS  ILE++F ++ + + RVLF
Sbjct: 129 RYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLF 169

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Length = 170

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

 Score = 68.0 bits (166), Expect = 4e-14
 Identities = 26/175 (14%), Positives = 53/175 (30%), Gaps = 34/175 (19%)

Query: 352 SNNFGELFEADSNDFRP--LEDL-DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYI 408
            N  G +      + R   LE+L D  +         +  P + + +  +  V++G   +
Sbjct: 19  ENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHH-ADADFLLFVLSGRAIL 77

Query: 409 EIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS-QNNN 467
            +                            + S  +    A  +PAG     V    + N
Sbjct: 78  TLVNND-----------------------DRDSYNLHPGDAQRIPAGTTYYLVNPHDHQN 114

Query: 468 LEVVCFEI--NAEGNIRFPLAGRNK----IFKVMESEAKELAFNTRADEVERVFG 516
           L+++   I  N  G          +      +       E +F++  +E+ RV  
Sbjct: 115 LKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLF 169

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 185

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score =  131 bits (331), Expect = 2e-36
 Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 11/189 (5%)

Query: 338 SRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTK 397
               FNL  + P +SN  G+LFE        L DLD+ +S  ++++GA+  P +NS++  
Sbjct: 6   EDKPFNLRSRDPIYSNKLGKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIV 65

Query: 398 VAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHP 457
           V V+  G+  IE+      +   +        +EE      K  + +     +++PAG+P
Sbjct: 66  VLVINEGEANIELVGIKEQQQRQQ--------QEEQPLEVRKYRAELSEQDIFVIPAGYP 117

Query: 458 VVTVASQNNNLEVVCFEINAEGNIR-FPLAGRNKIFKVMESEAKELAFNTRADEVERVFG 516
           VV  A   ++L    F INAE N R F    ++ +   + S+ +ELAF   A ++E +  
Sbjct: 118 VVVNA--TSDLNFFAFGINAENNQRNFLAGSKDNVISQIPSQVQELAFPGSAKDIENLIK 175

Query: 517 NQDQDWFFK 525
           +Q + +F  
Sbjct: 176 SQSESYFVD 184

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 185

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 71.6 bits (175), Expect = 4e-15
 Identities = 27/185 (14%), Positives = 55/185 (29%), Gaps = 31/185 (16%)

Query: 148 EESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGI--LIANPQTFVTP-THLDADAVFF 204
                 +++ G++     F    +    L    + +  +  N      P  +  A  V  
Sbjct: 14  SRDPIYSNKLGKL-----FEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLV 68

Query: 205 VSWGQGTITVIRENNRE---------------SYNVKRGDIIRVPSGNTFYVTNTDDDEK 249
           ++ G+  I ++    ++                  +   DI  +P+G    V  T D   
Sbjct: 69  INEGEANIELVGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSDLNF 128

Query: 250 LYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQG 309
                    IN       F     +N    +     ++ E AF      +E ++  Q + 
Sbjct: 129 FAF-----GINAENNQRNFLAGSKDN---VISQIPSQVQELAFPGSAKDIENLIKSQSES 180

Query: 310 AMVKA 314
             V A
Sbjct: 181 YFVDA 185

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score =  127 bits (319), Expect = 8e-33
 Identities = 40/354 (11%), Positives = 101/354 (28%), Gaps = 45/354 (12%)

Query: 167 TQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNR-ESYNV 225
               + L   E      +   P               ++ +G   +T++ E  R    +V
Sbjct: 60  EVTVRELPISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDV 119

Query: 226 KRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSW 285
             GD+   PSG    +   ++  +  +V          +   F          +L     
Sbjct: 120 GEGDLWYFPSGLPHSIQALEEGAEFLLV---FDDGSFSENSTFQ------LTDWLAHTPK 170

Query: 286 EILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLF 345
           E++ + F   ++ +  +  ++      +        +     G   +PF      T+ L 
Sbjct: 171 EVIAANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEGPNGEVPYPF------TYRLL 224

Query: 346 GKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGD 405
            + P   +  G+++ ADS +F+      I  +   +  GAM    ++  + +    ++G 
Sbjct: 225 EQEP-IESEGGKVYIADSTNFKV--SKTIASALVTVEPGAMRELHWHPNTHEWQYYISGK 281

Query: 406 GYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQN 465
             + +                           H  +   +      VP           +
Sbjct: 282 ARMTVFASD----------------------GHARTFNYQAGDVGYVPFAMGHYVENIGD 319

Query: 466 NNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQD 519
             L  +      +    +     N+   ++     +   +   D  + +   + 
Sbjct: 320 EPLVFLEI-FKDD---HYADVSLNQWLAMLPETFVQAHLDLGKDFTDVLSKEKH 369

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 162

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score =  118 bits (298), Expect = 5e-32
 Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 29/182 (15%)

Query: 350 SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIE 409
           +  N FG L E   N       L++ +S   + +GA+  P Y S++  + VV  G+ ++E
Sbjct: 2   TIGNEFGNLTERTDNS------LNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVE 55

Query: 410 IACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLE 469
           +  P  ++ + E               Y    + +  D  +++PA +PV   A+   N+ 
Sbjct: 56  LVGPKGNKETLE---------------YESYRAELSKDDVFVIPAAYPVAIKATS--NVN 98

Query: 470 VVCFEINAEGNIRFPLAGRNK------IFKVMESEAKELAFNTRADEVERVFGNQDQDWF 523
              F INA  N R  LAG+           +   +   L F+   DEV ++   Q   +F
Sbjct: 99  FTGFGINANNNNRNLLAGKTDNVISSIGRALDGKDVLGLTFSGSGDEVMKLINKQSGSYF 158

Query: 524 FK 525
             
Sbjct: 159 VD 160

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 162

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 94.2 bits (234), Expect = 3e-23
 Identities = 18/161 (11%), Positives = 46/161 (28%), Gaps = 16/161 (9%)

Query: 165 KFTQRSKLLRGLEKYRLGILIANPQTFVTP-THLDADAVFFVSWGQGTITVIRENNRES- 222
           +F   ++         +  +         P  +  A  +  V+ G+  + ++     +  
Sbjct: 6   EFGNLTERTDNSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKET 65

Query: 223 -------YNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGEN 275
                    + + D+  +P+     +  T +            IN             +N
Sbjct: 66  LEYESYRAELSKDDVFVIPAAYPVAIKATSNVNFTGF-----GINANNNNRNLLAGKTDN 120

Query: 276 PES--FLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKA 314
             S         ++L   F    D + +++ +Q     V A
Sbjct: 121 VISSIGRALDGKDVLGLTFSGSGDEVMKLINKQSGSYFVDA 161

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 174

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

 Score = 97.7 bits (243), Expect = 2e-24
 Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 24/179 (13%)

Query: 351 HSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEI 410
           ++   G +  A S DF  L  L ++  + ++ K AM  P YN  +  +   + G   I++
Sbjct: 19  YNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQV 78

Query: 411 ACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEV 470
              +                             ++     IVP    V   +  ++N E 
Sbjct: 79  VNCN---------------------GERVFDGELQEGRVLIVPQNFVVAARSQ-SDNFEY 116

Query: 471 VCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFFKGPSR 529
           V F+ N    +   LAG N +   +  E  +  FN ++ +  ++  N     F   P  
Sbjct: 117 VSFKTNDT-PMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNNPFK-FLVPPQE 173

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 174

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

 Score = 68.0 bits (166), Expect = 5e-14
 Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 12/129 (9%)

Query: 187 NPQTFVTP-THLDADAVFFVSWGQGTITVIRENNRESYN--VKRGDIIRVPSGNTFYVTN 243
                  P  +L+A+++ +   G+  I V+  N    ++  ++ G ++ VP        +
Sbjct: 50  RKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARS 109

Query: 244 TDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVL 303
             D+ +    K                AG     S L A   E+++  F  K     ++ 
Sbjct: 110 QSDNFEYVSFKT------NDTPMIGTLAG---ANSLLNALPEEVIQHTFNLKSQQARQIK 160

Query: 304 FQQDQGAMV 312
                  +V
Sbjct: 161 NNNPFKFLV 169

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 173

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score = 84.6 bits (209), Expect = 7e-20
 Identities = 21/174 (12%), Positives = 49/174 (28%), Gaps = 26/174 (14%)

Query: 351 HSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEI 410
           ++   G +   +S     L    ++  Y  + +  + +P +N  +  V  V  G G + +
Sbjct: 24  YNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRV 83

Query: 411 ACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEV 470
                                            +R     +VP    V     +     V
Sbjct: 84  VNCQ---------------------GNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYV 122

Query: 471 VCFEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQDQDWFF 524
           V        +     +    +F+ + SE    ++N    +V ++    +     
Sbjct: 123 VFKT-----HHNAVSSYIKDVFRAIPSEVLSNSYNLGQSQVRQLKYQGNSGPLV 171

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 173

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score = 65.4 bits (159), Expect = 4e-13
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 22/164 (13%)

Query: 154 TSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIAN--PQTFVTPT-HLDADAVFFVSWGQG 210
             + GR+      T  S  L  L ++ L             +P  +L+A++V +V+ G+G
Sbjct: 25  NPKAGRI-----STLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKG 79

Query: 211 TITVIRENNRESYN--VKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAF 268
            + V+       ++  ++RG ++ VP          +   +  + K              
Sbjct: 80  RVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFK------------TH 127

Query: 269 YGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMV 312
           + A     +   RA   E+L +++   +  + ++ +Q + G +V
Sbjct: 128 HNAVSSYIKDVFRAIPSEVLSNSYNLGQSQVRQLKYQGNSGPLV 171

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score = 83.0 bits (205), Expect = 1e-18
 Identities = 39/231 (16%), Positives = 68/231 (29%), Gaps = 70/231 (30%)

Query: 148 EESSRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHLDADAVFFV 205
           E   RV S+ G +     +  +   L+  G+   +  +   N      P++     +  V
Sbjct: 12  EPDHRVESEGGLIET---WNSQHPELQCAGVTVSKRTL---NRNGLHLPSYSPYPQMIIV 65

Query: 206 SWGQGTITVIRENNRESYN--------------------------VKRGDIIRVPSGNTF 239
             G+G I        E++                              GD++ +P G  +
Sbjct: 66  VQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPY 125

Query: 240 YVTNTDDDEKLYIVKFIKSIN----LPGQYEAFYGAGG---------------------- 273
           +  N   DE +  +  + + N    L      FY AG                       
Sbjct: 126 WTYN-TGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRK 184

Query: 274 --------ENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQ-GAMVKAS 315
                   E   S L  FS   L  +F T  D+ E++    D+   +V   
Sbjct: 185 QGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVE 235

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score = 72.6 bits (178), Expect = 5e-15
 Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 45/222 (20%)

Query: 343 NLFGKRPSHSNNF-GELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVV 401
           NL    P H     G L E  ++    L+   +TVS   +++  +  P Y S   ++ +V
Sbjct: 7   NLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSY-SPYPQMIIV 65

Query: 402 VAGDGYIEIACPHVSRSSSERRHQGSSTREEGSAT---YHKVSSRIRTDSAYIVPAGHPV 458
           V G G I  A P    +  + + Q S             H+           ++P G P 
Sbjct: 66  VQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPY 125

Query: 459 VTVASQNNNLEVVC-----------------FEINAEGNIRFPLAGR------------- 488
            T  + +  +  +                  F +    +I  P   +             
Sbjct: 126 WTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQ 185

Query: 489 ----------NKIFKVMESEAKELAFNTRADEVERVFGNQDQ 520
                       +           +FNT  D  E++    D+
Sbjct: 186 GQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDE 227

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 239

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

 Score = 79.2 bits (195), Expect = 2e-17
 Identities = 41/227 (18%), Positives = 82/227 (36%), Gaps = 66/227 (29%)

Query: 148 EESSRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHLDADAVFFV 205
           +  +R+ S+ G +     +   +K  +  G+   R  +   N      P++ +     ++
Sbjct: 12  KPDNRIESEGGLIET---WNPNNKPFQCAGVALSRCTL---NRNALRRPSYTNGPQEIYI 65

Query: 206 SWGQGTITVI-----------------------RENNRESYNVKRGDIIRVPSGNTFYVT 242
             G+G   +I                       ++ +++ YN + GD+I VP+G  +++ 
Sbjct: 66  QQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMY 125

Query: 243 NTDDDEKLYIVKFIKSINLPGQ----YEAFYGAGGENPE--------------------- 277
           N ++D  +  V  I + +L  Q       FY AG +  E                     
Sbjct: 126 N-NEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQE 184

Query: 278 ------SFLRAFSWEILESAFKTKRDSLERVLFQQDQ---GAMVKAS 315
                 S L  F+ E LE AF   +   + +  + +    GA+V   
Sbjct: 185 EENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVK 231

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 239

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

 Score = 78.8 bits (194), Expect = 4e-17
 Identities = 33/218 (15%), Positives = 65/218 (29%), Gaps = 39/218 (17%)

Query: 342 FNLFGKRPSHSNNF-GELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAV 400
             L   +P +     G L E  + + +P +   + +S   +++ A+  P Y +   +   
Sbjct: 6   QKLNALKPDNRIESEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRRPSY-TNGPQEIY 64

Query: 401 VVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVT 460
           +  G G   +  P    +  E +      +       H+     R      VP G     
Sbjct: 65  IQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWM 124

Query: 461 VASQNNNLEVVC-FEINAEGN------IRFPLAGRNK----------------------- 490
             +++  +  V   + N+  N       RF LAG  +                       
Sbjct: 125 YNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQE 184

Query: 491 -------IFKVMESEAKELAFNTRADEVERVFGNQDQD 521
                  I      E  E AF+      + + G  + +
Sbjct: 185 EENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGE 222

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 69.1 bits (168), Expect = 2e-13
 Identities = 32/305 (10%), Positives = 81/305 (26%), Gaps = 46/305 (15%)

Query: 195 THLDADAVFFVSWGQGTITVI-RENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIV 253
            H      F+ + G   +        +++  +  GD   VP   T      D D ++  V
Sbjct: 65  IHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDTEMTGV 124

Query: 254 KFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVK 313
                  +PG +E  +   G N         +    S   +        +       +  
Sbjct: 125 ------IVPGGFEDLFYYLGTNATD-TTHTPYIPSSSDSSSTTGPDSSTISTLQSFDVYA 177

Query: 314 ASKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDL- 372
                 R  + +   P+   +   +    +  G     +N +G  +      ++ +    
Sbjct: 178 ELSFTPRTDTVNGTAPANTVWHTGANALASTAGDPYFIANGWGPKYLNSQYGYQIVAPFV 237

Query: 373 ----------DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSER 422
                      ++    + +   +  P ++        V  G   ++I            
Sbjct: 238 TATQAQDTNYTLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIG----------- 286

Query: 423 RHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIR 482
                             ++ + +     +P G       S+    +V+     ++G  +
Sbjct: 287 ---------------DYAATELGSGDVAFIPGGVE-FKYYSEAYFSKVLFVSSGSDGLDQ 330

Query: 483 FPLAG 487
             + G
Sbjct: 331 NLVNG 335

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 21/177 (11%), Positives = 40/177 (22%), Gaps = 27/177 (15%)

Query: 121 QEKYRREKEGEGGQHNTQEEEEEEEGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYR 180
            + Y                         ++ + S  G   F+        L        
Sbjct: 173 FDVYAELSFTPRTDTVNGTAPANTVWHTGANALASTAGDPYFIANGWGPKYLNSQYGYQI 232

Query: 181 LGILIANPQTF-------------------VTPTHLDADAVFFVSWGQGTITVIRENNRE 221
           +   +   Q                     V          F V  G+  + +    +  
Sbjct: 233 VAPFVTATQAQDTNYTLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQI---GDYA 289

Query: 222 SYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPES 278
           +  +  GD+  +P G  F   +     K+  V      +     +     GGE   S
Sbjct: 290 ATELGSGDVAFIPGGVEFKYYSEAYFSKVLFV-----SSGSDGLDQNLVNGGEEWSS 341

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 201

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 56.5 bits (136), Expect = 7e-10
 Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 12/120 (10%)

Query: 188 PQTFVTP-THLDADAVFFVSWGQGTITVIRENNRE----SYNVKRGDIIRVPSGNTFYVT 242
           P     P  H  A  +  V  G+  + ++   +      S  V+ G+   +P G   +  
Sbjct: 81  PGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQF 140

Query: 243 NTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERV 302
           N    E   +V F  +   PG         G +P          +L  A + +   +E +
Sbjct: 141 NVGKTEAYMVVSF--NSQNPGIVFVPLTLFGSDP-----PIPTPVLTKALRVEAGVVELL 193

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 201

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 51.5 bits (123), Expect = 3e-08
 Identities = 22/155 (14%), Positives = 47/155 (30%), Gaps = 21/155 (13%)

Query: 361 ADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSS 420
            D  ++     L ++++  + + G    P  + R+T++ +V+ G+  + I          
Sbjct: 59  LDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSL------ 112

Query: 421 ERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNL-EVVCFEINAEG 479
                         +     S  +R    +++P G               VV F     G
Sbjct: 113 -------------DSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPG 159

Query: 480 NIRFPLAGRNKIFKVMESEAKELAFNTRADEVERV 514
            +  P          + +     A    A  VE +
Sbjct: 160 IVFVP-LTLFGSDPPIPTPVLTKALRVEAGVVELL 193

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 50.7 bits (120), Expect = 2e-07
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 10/86 (11%)

Query: 195 THLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK 254
            H      F+   GQ T+      + +   +  GD + VP+             K+    
Sbjct: 231 YHEYHTETFYCLEGQMTMWT----DGQEIQLNPGDFLHVPANTVHSYRLDSHYTKMVG-- 284

Query: 255 FIKSINLPGQYEAFYGAGGENPESFL 280
               + +PG +E F+   G+  E  +
Sbjct: 285 ----VLVPGLFEPFFRTLGDPYEGHI 306

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]} Length = 160

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

 Score = 45.2 bits (106), Expect = 3e-06
 Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 170 SKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNR-----ESYN 224
             L  G+++  + +   +P           + VF V  G+GT+ +   + +     +   
Sbjct: 32  GALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIP 91

Query: 225 VKRGDIIRVPSGNTFYVTNTDDDEKLYIV 253
             +     +P  +   V N+D+ E L ++
Sbjct: 92  FFQNTTFSIPVNDPHQVWNSDEHEDLQVL 120

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Length = 351

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

 Score = 42.4 bits (99), Expect = 8e-05
 Identities = 31/230 (13%), Positives = 59/230 (25%), Gaps = 20/230 (8%)

Query: 181 LGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFY 240
            GI    P+          +A  FV  G+G  TV+   N +   + RGD++  P      
Sbjct: 89  AGIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVV---NGDPVRMSRGDLLLTPGWCFHG 145

Query: 241 VTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLE 300
             N  D    +I      I    Q +  +   G +  +     ++   E  +        
Sbjct: 146 HMNDTDQPMAWID--GLDIPFSQQMDVGFFEFGSDRVTDYATPNFSRGERLWCHPGLRPL 203

Query: 301 RVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFE 360
             L       +     +        Q    +      +         R  +    G    
Sbjct: 204 SGLQNTVASPIGAYRWEFTDRALTEQ--LLLEDEGQPATVAPGHAAIRYVNPTTGG---- 257

Query: 361 ADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEI 410
                    + +       +  +        N   + V  V  G G + +
Sbjct: 258 ---------DVMPTLRCEFHRLRAGTETATRNEVGSTVFQVFEGAGAVVM 298

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} Length = 355

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 184 LIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN 243
           ++   +      H     ++ V+ GQG   V      + ++    DI  VP+       N
Sbjct: 262 MLRPGEHTKAHRHTGN-VIYNVAKGQGYSIV----GGKRFDWSEHDIFCVPAWTWHEHCN 316

Query: 244 TDDDEKLYIVKF 255
           T + +   +  F
Sbjct: 317 TQERDDACLFSF 328

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]} Length = 128

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 182 GILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYV 241
           G +  +   F  P  L+ D +  V  G+  +        E+   K GD++ +P G++   
Sbjct: 57  GFMQWDNAFF--PWTLNYDEIDMVLEGELHVRH----EGETMIAKAGDVMFIPKGSSIEF 110

Query: 242 TNTDDDEKLYIV 253
                   LY+ 
Sbjct: 111 GTPTSVRFLYVA 122

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]} Length = 179

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 12/67 (17%), Positives = 22/67 (32%)

Query: 189 QTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDE 248
           + F+       D V F   G G   +   +       ++ D+I VP+    +     +  
Sbjct: 90  EKFLNEHTHGEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGSEPN 149

Query: 249 KLYIVKF 255
              I  F
Sbjct: 150 FTAIRIF 156

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 190

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 37.0 bits (85), Expect = 0.003
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 195 THLDADAVFFVSWGQGTITV-IRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDE 248
             LD   V+    G+G + +   E + +  +++ G ++ VP        N  D+ 
Sbjct: 92  AKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGDEP 146

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Length = 308

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (85), Expect = 0.004
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 8/98 (8%)

Query: 158 GRVAFL--PKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVI 215
            RV  L  P    +S +   L     G+ +  P         +  A+ F+  G+G  T +
Sbjct: 34  RRVLVLENPALRGQSSITATLY---AGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAV 90

Query: 216 RENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIV 253
                E   +  GD I  P        N  D+  +++ 
Sbjct: 91  DG---ERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLD 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	540
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	100.0
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	100.0
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	100.0
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	100.0
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	100.0
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	100.0
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	100.0
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	100.0
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	100.0
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	100.0
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	100.0
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	100.0
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	99.97
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	99.97
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	99.97
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	99.97
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	99.97
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	99.97
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	99.96
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	99.96
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	99.95
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	99.95
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	99.94
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	99.94
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	99.9
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	99.89
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	99.89
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	99.8
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	99.78
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	99.78
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	99.75
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	99.74
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	99.74
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	99.7
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	99.65
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	99.36
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	99.34
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	99.23
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	99.23
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	99.23
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	99.12
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	99.12
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	99.05
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	99.02
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	99.01
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	99.0
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	98.98
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	98.98
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	98.93
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	98.93
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	98.93
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	98.88
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	98.86
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	98.85
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	98.84
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	98.82
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	98.79
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	98.75
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	98.74
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	98.7
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	98.63
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	98.56
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	98.52
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	98.44
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	98.43
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	98.22
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	98.17
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	98.09
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	98.03
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	97.95
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	97.76
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	97.68
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	97.48
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	97.45
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	96.96
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	96.82
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	96.78
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	96.71
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	96.69
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	96.63
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	96.55
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	96.47
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	96.16
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	96.15
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	96.13
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	95.88
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	95.46
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	95.19
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	95.16
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	95.15
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	95.13
d1oi6a_	202	dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc	94.89
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	94.82
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	94.66
d1yuda1	158	Hypothetical protein SO0799 {Shewanella oneidensis	94.57
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	94.34
d2gm6a1	192	Cysteine dioxygenase type I {Ralstonia eutropha [T	94.03
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	93.92
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	93.84
d1ep0a_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	93.8
d2ixha1	184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	93.65
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	93.64
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	93.54
d1ep0a_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	93.52
d1nxma_	194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	93.42
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	93.34
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	93.19
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	93.19
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	92.54
d2ixha1	184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	92.02
d1oi6a_	202	dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc	91.98
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	90.52
d1znpa1	140	Hypothetical protein Atu3615 {Agrobacterium tumefa	90.02
d1nxma_	194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	89.16
d1e5ra_	290	Type II Proline 3-hydroxylase (proline oxidase) {S	88.36
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	87.85
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	85.96
d1znpa1	140	Hypothetical protein Atu3615 {Agrobacterium tumefa	84.98
d2oyza1	93	Uncharacterized protein VPA0057 {Vibrio parahaemol	84.1
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	83.85
d2gm6a1	192	Cysteine dioxygenase type I {Ralstonia eutropha [T	81.1
d1xe7a_	194	Hypothetical protein YML079W {Baker's yeast (Sacch	80.26

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=4.8e-52  Score=434.18  Aligned_cols=314  Identities=12%  Similarity=0.140  Sum_probs=255.5

Q ss_pred             cCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCc-eEEeeCCCcEEEE
Q 040805          155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNR-ESYNVKRGDIIRV  233 (540)
Q Consensus       155 ~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~-~~~~l~~GDv~~i  233 (540)
                      .++|++|.++.  ...|.+.+   ++.+.+.|+||+++.||||.+++|.||++|++++++|++++. .+++|++||+|+|
T Consensus        53 ~~gg~~r~~~~--~~lp~~~~---~a~~~~~L~pga~~~pH~H~~ae~~yVl~G~~~vt~Vd~~G~~~~~~l~~GDv~~~  127 (372)
T d1j58a_          53 EKGGYAREVTV--RELPISEN---LASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYF  127 (372)
T ss_dssp             ETTEEEEEECT--TTCTTCSS---CEEEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEE
T ss_pred             cCCCeeEEeeh--hhChhhhh---hhheEEEECCCcCcCCcccCcccEEEEEeCEEEEEEEeCCCcEEEEEeccCCEEEE
Confidence            58899999853  22355544   555555999999999999988899999999999999998754 5678999999999


Q ss_pred             CCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEE
Q 040805          234 PSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVK  313 (540)
Q Consensus       234 PaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~  313 (540)
                      |+|++||++|.+  +.+.++.++++. ++.....|.+      .+||++||++||++||+++.+++++|++.+.  +|+.
T Consensus       128 P~G~~H~i~n~~--dg~e~l~vf~~~-~~~~~~~f~~------~~~~~~~p~evLa~af~v~~~~~~~i~~~e~--~i~~  196 (372)
T d1j58a_         128 PSGLPHSIQALE--EGAEFLLVFDDG-SFSENSTFQL------TDWLAHTPKEVIAANFGVTKEEISNLPGKEK--YIFE  196 (372)
T ss_dssp             CTTCCEEEEEEE--EEEEEEEEESCT-TCCGGGEEEH------HHHHHTSCHHHHHHHHTCCTGGGTTSCSSCC--SEEC
T ss_pred             CCCCEEEEEeCC--CCcEEEEEECCC-Ccccccceee------ccccccCCHHHHHHhhCCCHHHHhhcccccc--cccc
Confidence            999999999975  468888888544 3444444443      3899999999999999999999999998774  6665


Q ss_pred             cc-chhhhccCCCCCCCCcCCCCCCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCccccccc
Q 040805          314 AS-KQQIRALSRSQEGPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYN  392 (540)
Q Consensus       314 ~~-~e~l~~l~~~~~~~s~~~~~~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h  392 (540)
                      .. +..+......    + .......+++|+|..++| +++.+|+++++++.+||+|+  +|+++.++|.||||+.||||
T Consensus       197 ~~~p~~~~~~~~~----~-~~g~~~~~~~~~l~~q~P-~~~~gG~~~~~d~~~fp~~~--~is~~~~~l~PG~~~~~H~H  268 (372)
T d1j58a_         197 NQLPGSLKDDIVE----G-PNGEVPYPFTYRLLEQEP-IESEGGKVYIADSTNFKVSK--TIASALVTVEPGAMRELHWH  268 (372)
T ss_dssp             CCCCCCHHHHCCC----C-TTCCCSSCSEEEGGGSCC-EECSSEEEEEESTTTSTTCC--SCEEEEEEECTTCEEEEEEC
T ss_pred             ccCCCcchhhhcc----C-CCCCCCCcceeeccccCC-cccCCccEEEeccccCCccC--ceeEEEEEECCCcccCCCCC
Confidence            42 1122211111    1 112234567899999999 68999999999999999998  58999999999999999999


Q ss_pred             CCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEE
Q 040805          393 SRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVC  472 (540)
Q Consensus       393 ~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~  472 (540)
                      |+|+||.||++|+|+++|+++++                      +..+.+|++|||++||+|++|++.|.+++++.|+.
T Consensus       269 p~a~E~~yvl~G~g~v~v~~~~g----------------------~~~t~~l~~GDv~~iP~g~~H~i~N~g~e~l~~l~  326 (372)
T d1j58a_         269 PNTHEWQYYISGKARMTVFASDG----------------------HARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLE  326 (372)
T ss_dssp             SSSCEEEEEEESEEEEEEEEETT----------------------EEEEEEEESSCEEEECTTCBEEEEECSSSCEEEEE
T ss_pred             CCCcEEEEEEECeEEEEEEcCCC----------------------ceEEEEecCCcEEEECCCCeEEEEECCCCCEEEEE
Confidence            99999999999999999999876                      45567899999999999999999999999999988


Q ss_pred             EEecCCCCccccccccccccccCCHHHHHHHcCCCHHHHHHhhcCC
Q 040805          473 FEINAEGNIRFPLAGRNKIFKVMESEAKELAFNTRADEVERVFGNQ  518 (540)
Q Consensus       473 F~~~a~~~~~~~LAG~~svl~~~~~evla~AF~vs~e~v~kl~~~q  518 (540)
                      +..+. .+...-|   +++|+.+|++|++++|+++.+++++|++..
T Consensus       327 vf~s~-~~~~i~~---~~~l~~~P~~vv~~~~~~~~e~~~~l~~~k  368 (372)
T d1j58a_         327 IFKDD-HYADVSL---NQWLAMLPETFVQAHLDLGKDFTDVLSKEK  368 (372)
T ss_dssp             EESSS-SCCCEEH---HHHHHTSCHHHHHHHHTCCHHHHTTCCSSC
T ss_pred             EECCC-CcceeeH---HHHhhhCCHHHHHHHhCcCHHHHHHHHhcC
Confidence            65443 3333223   578999999999999999999999998654

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=100.00  E-value=1.5e-43  Score=340.63  Aligned_cols=179  Identities=32%  Similarity=0.587  Sum_probs=169.1

Q ss_pred             CCcccceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEE--
Q 040805          146 GDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESY--  223 (540)
Q Consensus       146 ~~~f~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~--  223 (540)
                      +++|+++|+|++|+|++|++|++++++|+|+.+||+++++|+||+|++|||++|++|+||++|+|++++|+|++..++  
T Consensus         9 ~~~f~~~~~~e~G~i~~l~~f~~~~~~l~~l~~~~v~~~~i~P~~l~lP~~~nA~~i~yV~~G~G~v~~v~p~~~~~~~~   88 (200)
T d2phla1           9 DNSWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFF   88 (200)
T ss_dssp             GGTEEEEEEETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEEEE
T ss_pred             hhcccceeECCCccEEEeccccccchhhhcccceEEEEEEecCCceeeeecCCCCEEEEEEeeeEEEEEEECCCCceeeh
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999998765  


Q ss_pred             ----eeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHH
Q 040805          224 ----NVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSL  299 (540)
Q Consensus       224 ----~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v  299 (540)
                          +|++||||+||+|++||++|+|++++|+++++++++|.++ +..|||||+..++|||++|+++||++||+++.+++
T Consensus        89 ~~~~~l~~GDv~~iPaG~~~~~~n~~~~~~l~~~~l~~~~n~~~-~~~f~lag~~~~~svl~~f~~evLa~aF~v~~e~~  167 (200)
T d2phla1          89 LTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQ-IHEFFLSSTEAQQSYLQEFSKHILEASFNSKFEEI  167 (200)
T ss_dssp             EESSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSSSS-CCEEECCCBTTBCCGGGGSCHHHHHHHHTSCHHHH
T ss_pred             hhccCccCCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCCCc-cccceeccccccccHhHcCCHHHHHHHcCCCHHHH
Confidence                7999999999999999999998788999999999988775 67899999988899999999999999999999999


Q ss_pred             HHHhcc---CCCCcEEEccchhhhccCCC
Q 040805          300 ERVLFQ---QDQGAMVKASKQQIRALSRS  325 (540)
Q Consensus       300 ~~l~~~---q~~g~Iv~~~~e~l~~l~~~  325 (540)
                      ++|+.+   |.+|+||++++|||+.|+++
T Consensus       168 ~kl~~~~~~q~~g~Iv~~~~eq~~~ls~~  196 (200)
T d2phla1         168 NRVLFEEEGQQEGVIVNIDSEQIKELSKH  196 (200)
T ss_dssp             HHHHTCSTTCBSSSEEECCTTTHHHHHHH
T ss_pred             HHHHhccccccCCceEEcCHHHHHHhhcc
Confidence            999853   45799999999999999987

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=100.00  E-value=2.3e-41  Score=325.91  Aligned_cols=182  Identities=35%  Similarity=0.664  Sum_probs=172.4

Q ss_pred             cCCcccceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEe
Q 040805          145 EGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYN  224 (540)
Q Consensus       145 ~~~~f~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~  224 (540)
                      +.++|.++|+|++|+|+++++|+.++++|+++.+|++++++|+||++++|||++|++|+||++|+|++++|.|++..+++
T Consensus         6 ~~~~~~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~~~a~ev~yV~~G~g~~~~v~~~~~~~~~   85 (203)
T d1uika1           6 NSKRFQTLFKNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHHADADYLIVILNGTAILTLVNNDDRDSYN   85 (203)
T ss_dssp             CGGGEEEEEECSSEEEEEECCTTSSCGGGGGGTTCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEE
T ss_pred             ccccccCceECCCCeEEEecccCccchhhccccceEEEEEEecCCCccccccCCCcEEEEEEEEEEEEEEEeCCCeEEEE
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhc
Q 040805          225 VKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLF  304 (540)
Q Consensus       225 l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~  304 (540)
                      |++||||+||+|++||++|++++++|.++++.+++|.++.+..||++|+..+.|+|++|+++||++||+++.+++++|+.
T Consensus        86 l~~GDv~~iP~G~~~~~~N~~~~e~l~iv~~~~~~n~~~~~~~f~~~g~~~~~~vl~gf~~~vL~~aF~v~~e~~~kl~~  165 (203)
T d1uika1          86 LQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPVNKPGRFESFFLSSTQAQQSYLQGFSKNILEASYDTKFEEINKVLF  165 (203)
T ss_dssp             EETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHTT
T ss_pred             ecCCCEEEECCCCeEEEEECCCCccEEEEEEecCCCCcccccccccccCccccchhHhCCHHHHHHHhCCCHHHHHHHHh
Confidence            99999999999999999999988899999999999999899999999999899999999999999999999999999987


Q ss_pred             cCC-----------CCcEEEccchhhhccCCCC
Q 040805          305 QQD-----------QGAMVKASKQQIRALSRSQ  326 (540)
Q Consensus       305 ~q~-----------~g~Iv~~~~e~l~~l~~~~  326 (540)
                      +|.           .|+|++++++++++|+++.
T Consensus       166 ~q~~~~~~~~~~~~~g~iv~~~~eq~r~~~~~~  198 (203)
T d1uika1         166 GREEGQQQGEERLQESVIVEISKKQIRELSKHA  198 (203)
T ss_dssp             C------------CCSSEEECCHHHHHHHTTTC
T ss_pred             cccccccccccccCCCCEeecCHHHHHHHhccC
Confidence            654           3899999999999999984

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=100.00  E-value=3.1e-41  Score=320.74  Aligned_cols=180  Identities=31%  Similarity=0.524  Sum_probs=156.7

Q ss_pred             CCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCC
Q 040805          337 ESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVS  416 (540)
Q Consensus       337 ~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~  416 (540)
                      ++..||||.+++|+|+|++|+++++++.++|+|+++||++++++|+||||++|||||+|++|+||++|+|+++||+|++.
T Consensus         5 ~~~~pfnl~~~~p~~~n~~G~~~~~~~~~~p~L~~~~v~~~~~~l~p~~~~~Ph~h~~A~~i~~V~~G~g~v~~v~~~~~   84 (185)
T d1uika2           5 SEDKPFNLRSRDPIYSNKLGKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIELVGIKEQ   84 (185)
T ss_dssp             CSSSCEETTSSCCSEESSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC---
T ss_pred             cCCCccccccCCCceeCCCCeEEEeChhhChhhhhcCchhheeecCCCceeeeeecCCCCEEEEEEeeEEEEEEEccCcc
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999985


Q ss_pred             CCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccc-cccccccC
Q 040805          417 RSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG-RNKIFKVM  495 (540)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG-~~svl~~~  495 (540)
                      ..        .++++.....|++++.+|++||||+||+||+||++|+++  +.+++|.+++.++..+|++| .+|+|++|
T Consensus        85 ~~--------~~~~~~~~~~~~~~~~~l~~GDv~viP~G~~~~~~n~~d--~~~v~~~~~~~~~~~~f~ag~~~~vl~~~  154 (185)
T d1uika2          85 QQ--------RQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSD--LNFFAFGINAENNQRNFLAGSKDNVISQI  154 (185)
T ss_dssp             -----------------CBCCEEEEEEECTTCEEEECTTCCEEEEESSS--EEEEEEEETCTTCCEEESSSSSSBGGGGS
T ss_pred             ch--------hhccccccCcceeEEEEecCCcEEEECCCCEEEEEcCCC--ccEEEEEEcCCCCcccccccccccccccC
Confidence            21        111222334568999999999999999999999999754  77888888887888888777 58999999


Q ss_pred             CHHHHHHHcCCCHHHHHHhhcCCCCceEEcC
Q 040805          496 ESEAKELAFNTRADEVERVFGNQDQDWFFKG  526 (540)
Q Consensus       496 ~~evla~AF~vs~e~v~kl~~~q~e~~f~~~  526 (540)
                      |++||++|||++.+++++|+.+|++++|+|+
T Consensus       155 ~~evLa~aF~v~~~~~~kl~~~q~e~~i~~a  185 (185)
T d1uika2         155 PSQVQELAFPGSAKDIENLIKSQSESYFVDA  185 (185)
T ss_dssp             CHHHHHHHSSSCHHHHHHHHHHCCSCSEEEC
T ss_pred             CHHHHHHHhCCCHHHHHHHHhcCCceEEecC
Confidence            9999999999999999999999999999974

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=100.00  E-value=5.4e-40  Score=310.35  Aligned_cols=171  Identities=29%  Similarity=0.589  Sum_probs=162.8

Q ss_pred             cCCcccceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEe
Q 040805          145 EGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYN  224 (540)
Q Consensus       145 ~~~~f~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~  224 (540)
                      +.++|+++|+|++|+|++|++|++++++|+|+.+|++++++|+||++++|||++|++|+||++|+|++++|++++.++++
T Consensus         7 ~~~~~~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~~~a~ev~yV~~G~g~v~~v~~~~~~~~~   86 (178)
T d1dgwa_           7 RSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYK   86 (178)
T ss_dssp             CGGGEEEEEEETTEEEEEECCTTSSCGGGGGGTTEEEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEE
T ss_pred             cccccccceECCCCcEEEecccCCcchhccCccceEEEEEEecCCcccccccCCCCEEEEEEEeEEEEEEecCCceEEEE
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhc
Q 040805          225 VKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLF  304 (540)
Q Consensus       225 l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~  304 (540)
                      |++||||+||+|++||++|++++++|.++++++++++++.++.|+++|+.++.|||++||++||++||+++.+++++|+.
T Consensus        87 l~~GDv~~iP~G~~h~~~N~~~~e~l~i~~~~~~~n~~~~~~~f~~~~~~~~~svl~~~~~evL~~aF~v~~e~~~kl~~  166 (178)
T d1dgwa_          87 LDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLL  166 (178)
T ss_dssp             EETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHTT
T ss_pred             ecCCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCCCccccccccccccCcccHHHhCCHHHHHHHhCCCHHHHHHHHh
Confidence            99999999999999999999888899999999999999999999999998889999999999999999999999999975


Q ss_pred             cC-CCCcEEEcc
Q 040805          305 QQ-DQGAMVKAS  315 (540)
Q Consensus       305 ~q-~~g~Iv~~~  315 (540)
                      ++ ++|.|++++
T Consensus       167 ~~~~~g~Iv~~P  178 (178)
T d1dgwa_         167 QEEQEGVIVKMP  178 (178)
T ss_dssp             SCCSSSSEEECC
T ss_pred             cccCCCcEEeCc
Confidence            54 469999874

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=100.00  E-value=2.2e-38  Score=297.09  Aligned_cols=160  Identities=33%  Similarity=0.680  Sum_probs=154.8

Q ss_pred             cCCcccceeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEe
Q 040805          145 EGDEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYN  224 (540)
Q Consensus       145 ~~~~f~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~  224 (540)
                      ++++|+++++|++|+|++|++|+.++++|+|+.+|+++.++|+||++++|||++|++|+||++|+|++++|.+++.++++
T Consensus        10 ~~~~f~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~~~~Ph~~~a~ei~yV~~G~g~v~~v~~~~~~~~~   89 (170)
T d1uija1          10 SSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYN   89 (170)
T ss_dssp             GGGSEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEE
T ss_pred             cccccccccccCCCcEEEEecccccchhhcchhheEEEEEEecCCcccccccCCCCEEEEEEEEEEEEEEEeCCCcEEEE
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhc
Q 040805          225 VKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLF  304 (540)
Q Consensus       225 l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~  304 (540)
                      |++|||++||+|++||++|+++++.|+++++.+++|+|+.+..|+++|+..++|||++||++||++||+|+.+++++|+.
T Consensus        90 l~~GDv~~vP~G~~h~~~n~~~~~~l~iv~~~~~~n~~~~~~~f~~~~~~~~~svl~~~~~evLa~aF~v~~e~i~kl~~  169 (170)
T d1uija1          90 LHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLF  169 (170)
T ss_dssp             ECTTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEESSCBSSCCCGGGGSCHHHHHHHHTSCHHHHHHHHT
T ss_pred             ecCCcEEEECCCCeEEEEEcCCCCcEEEEEecCCcCCCccccccccccCCCcccHhHhCCHHHHHHHhCCCHHHHHHHhc
Confidence            99999999999999999999988899999999999999999999999999899999999999999999999999999974

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=100.00  E-value=1.7e-37  Score=292.10  Aligned_cols=165  Identities=20%  Similarity=0.319  Sum_probs=149.7

Q ss_pred             eeEcCC--CCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCC
Q 040805          341 TFNLFG--KRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRS  418 (540)
Q Consensus       341 ~fnL~~--~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~  418 (540)
                      .+||..  ...+|++++|+++.+++.+||+|+++||++++++|+||||++|||||+|++|+||++|+|+++||++++.  
T Consensus         7 ~~ni~~~~~~d~~~~~gG~i~~~~~~~fP~L~~~~~s~~~~~l~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~g~--   84 (174)
T d1fxza2           7 RHNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGE--   84 (174)
T ss_dssp             EEECSSSSCCSEEETTTEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSC--
T ss_pred             hhccCCCCCCCcCcCCCeEEEEecHHHhhhhhhcCceEEEeeecCCCEeCCccCCCCCEEEEEEecceEEEEecCCCc--
Confidence            356643  3446888899999999999999999999999999999999999999999999999999999999999763  


Q ss_pred             cccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCCHH
Q 040805          419 SSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESE  498 (540)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~e  498 (540)
                                         ++++.+|++|||++||+|++||++|+ ++++.+++|.++. ++.+++|||.+++|++||++
T Consensus        85 -------------------~~~~~~l~~Gdv~vvP~G~~h~~~n~-~~~~~~v~~~~~~-~~~~~~lag~~s~l~~~~~~  143 (174)
T d1fxza2          85 -------------------RVFDGELQEGRVLIVPQNFVVAARSQ-SDNFEYVSFKTND-TPMIGTLAGANSLLNALPEE  143 (174)
T ss_dssp             -------------------EEEEEEEETTCEEEECTTCEEEEEEC-STTEEEEEEESSS-SCCEEESSSTTCTGGGSCHH
T ss_pred             -------------------eeEEEEEcCCcEEEECCCCEEEEEeC-CCCeEEEEEEccC-CCCcccccchhhhhhcCCHH
Confidence                               67888999999999999999999997 4689999987664 78899999999999999999


Q ss_pred             HHHHHcCCCHHHHHHhhcCCCCceEEcCCC
Q 040805          499 AKELAFNTRADEVERVFGNQDQDWFFKGPS  528 (540)
Q Consensus       499 vla~AF~vs~e~v~kl~~~q~e~~f~~~~~  528 (540)
                      ||++||+++.+++++|+.+|++.+|+|+++
T Consensus       144 vl~~af~v~~eei~~lk~~q~~~~~~~P~~  173 (174)
T d1fxza2         144 VIQHTFNLKSQQARQIKNNNPFKFLVPPQE  173 (174)
T ss_dssp             HHHHHHTCCHHHHHHHHHSCCCSSEECCCC
T ss_pred             HHHHHHCcCHHHHHHHHhcCCceEeCCCCC
Confidence            999999999999999999998888887653

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=100.00  E-value=1.4e-36  Score=297.62  Aligned_cols=167  Identities=24%  Similarity=0.439  Sum_probs=148.4

Q ss_pred             cceeecCCceEEEeccCcccccccc--ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEE----
Q 040805          150 SSRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESY----  223 (540)
Q Consensus       150 ~~~~~~e~G~i~~l~~f~~~~~~L~--Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~----  223 (540)
                      ..+|++|+|.+++|   |+++++|+  |+..+|+   +|+|+||++|||++|+.|+||++|+|++++|.|+|+++|    
T Consensus        14 ~~ri~sE~G~~E~~---d~~~~qlqcagV~~~r~---~I~p~gL~lP~y~~a~~i~yV~qG~G~~g~v~pgc~et~~~~~   87 (239)
T d1fxza1          14 DNRIESEGGLIETW---NPNNKPFQCAGVALSRC---TLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQ   87 (239)
T ss_dssp             SCEEEETTEEEEEC---CTTSHHHHHHTCEEEEE---EECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC-----
T ss_pred             chhhccCCceEEec---CCCChhhhhccchhhee---eeccCceecceecCCCeEEEEEeCEEEEEEecCCChhhhcccc
Confidence            35899999999985   88899999  9999999   999999999999999999999999999999999987665    


Q ss_pred             -------------------eeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCC----CcccccccCCCCCcc---
Q 040805          224 -------------------NVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLP----GQYEAFYGAGGENPE---  277 (540)
Q Consensus       224 -------------------~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~p----g~~~~f~LaG~~~~~---  277 (540)
                                         +|++||||+||||++||++|+| +++|++|+++|++|.+    ..++.|||||+.++.   
T Consensus        88 ~~~~~~~~~~~~d~~qk~~~lr~GDVi~iPAG~~~w~~N~g-n~~Lv~v~~~d~~n~~NQLd~~~r~F~laG~~~~e~~~  166 (239)
T d1fxza1          88 QPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNE-DTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLK  166 (239)
T ss_dssp             -------------CCCCEEEECTTEEEEECTTCEEEEEECS-SSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTHH
T ss_pred             cccccccccccchhhhhhhccccCCEEEecCCceEEEEeCC-CCcEEEEEEeccccccccccccceeeeccCCccccccc
Confidence                               9999999999999999999988 6799999999988863    367899999997653   


Q ss_pred             ------------------------cccccCCHHHHHHhcCCCHHHHHHHhccC---CCCcEEEccchhhhccCC
Q 040805          278 ------------------------SFLRAFSWEILESAFKTKRDSLERVLFQQ---DQGAMVKASKQQIRALSR  324 (540)
Q Consensus       278 ------------------------s~l~~f~~evLa~Af~v~~~~v~~l~~~q---~~g~Iv~~~~e~l~~l~~  324 (540)
                                              |||+||++++|++||||+.+++++|+..+   ..|.||+|+. .|+.++|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~ni~~gFs~~~La~Afnv~~e~~~klq~~~~~~~rG~IVrv~~-~l~~~~P  239 (239)
T d1fxza1         167 YQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKG-GLSVIKP  239 (239)
T ss_dssp             HHC-------------------CCCGGGGSCHHHHHHHHTCCHHHHHHHSCC-----CCSEEECSS-CCCCCCC
T ss_pred             ccccccccccccccccccccccCCCcccccCHHHHHHHHCcCHHHHHHHhcccccccCCCEEEEcC-CccccCC
Confidence                                    89999999999999999999999999765   3599999975 5665544

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=100.00  E-value=3.2e-36  Score=296.07  Aligned_cols=168  Identities=22%  Similarity=0.373  Sum_probs=151.5

Q ss_pred             cceeecCCceEEEeccCcccccccc--ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEE----
Q 040805          150 SSRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESY----  223 (540)
Q Consensus       150 ~~~~~~e~G~i~~l~~f~~~~~~L~--Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~----  223 (540)
                      ..++++|+|.+++|   |+++++|+  ||..+|+   +|+|+||++|||++|+.|+||++|+|++|+|.|+|+++|    
T Consensus        14 ~~r~~sE~G~~E~w---d~~~~qlqcagV~~~r~---~I~p~gL~lP~ys~a~~i~yV~qG~G~~giv~Pgc~et~~~~~   87 (245)
T d1od5a1          14 DHRVESEGGLIETW---NSQHPELQCAGVTVSKR---TLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQ   87 (245)
T ss_dssp             CEEEEETTEEEEEC---CTTSHHHHHHTCEEEEE---EECTTEEEEEEECSSCEEEEEEECEEEEEECCTTCCCCEEECC
T ss_pred             chhhcccCCeEEeC---CCCCHHHhhcCceeEEE---EEcCCccccccccCCCeEEEEEeCEEEEEEEeCCChhhhcchh
Confidence            35899999999995   88899999  9999999   999999999999999999999999999999999988776    


Q ss_pred             ----------------------eeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCC----CCcccccccCCCCC--
Q 040805          224 ----------------------NVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINL----PGQYEAFYGAGGEN--  275 (540)
Q Consensus       224 ----------------------~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~----pg~~~~f~LaG~~~--  275 (540)
                                            +|++||||+||||++||++|+| +++|++|+++|++|+    ++.++.|||||+..  
T Consensus        88 ~~~~~~~~~~~~~~~d~~qk~~rl~~GDVi~iPAG~~~w~yNdg-n~~Lv~v~~~d~~N~~NQLd~~~r~F~laG~~~~~  166 (245)
T d1od5a1          88 QQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTG-DEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIE  166 (245)
T ss_dssp             ---------------EEESCEEEEETTEEEEECTTCCEEEEECS-SSCEEEEEEECTTCTTCCSCSSCCCEESSSCCCCS
T ss_pred             hcccccccccccccccceeeeecccCCCEEEECCCceEEEEeCC-CCcEEEEEEEcccCcccccCCcceeEEecCCcccc
Confidence                                  4999999999999999999987 679999999998875    67899999999853  


Q ss_pred             ----------------------------cccccccCCHHHHHHhcCCCHHHHHHHhcc-CCCCcEEEccchhhhccCCC
Q 040805          276 ----------------------------PESFLRAFSWEILESAFKTKRDSLERVLFQ-QDQGAMVKASKQQIRALSRS  325 (540)
Q Consensus       276 ----------------------------~~s~l~~f~~evLa~Af~v~~~~v~~l~~~-q~~g~Iv~~~~e~l~~l~~~  325 (540)
                                                  +.|||+||++++|++||||+.+++++|+.. +..|.||+|+. .|+.++|.
T Consensus       167 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~nif~gF~~~~La~Af~v~~e~~~klq~~~~~rG~IVrv~~-~l~~~~P~  244 (245)
T d1od5a1         167 HPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEG-GLSVISPK  244 (245)
T ss_dssp             CTTTTC---------------------CCCCTTTTSCHHHHHHHTTCCHHHHHHTTCTTCCSCSEEECSS-CCCCCCSC
T ss_pred             cchhcccchhhhhcccccccccccccccCCCeeecCCHHHHHHHHCCCHHHHHHHhCcccCCCcEEEEcC-CccccCCC
Confidence                                        249999999999999999999999999964 55699999975 57777663

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=100.00  E-value=4.6e-35  Score=275.14  Aligned_cols=160  Identities=16%  Similarity=0.262  Sum_probs=141.0

Q ss_pred             eeEcCC-CCC-cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCC
Q 040805          341 TFNLFG-KRP-SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRS  418 (540)
Q Consensus       341 ~fnL~~-~~P-~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~  418 (540)
                      -+||.. .+| .|++.+|+++.+++.+||+|+++|||+++++|.||||++|||||+|++|+||++|+++++||++++.  
T Consensus        12 r~ni~~p~~~d~~n~~gG~i~~~~~~~fP~L~~lgls~~~v~L~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~~~--   89 (173)
T d1od5a2          12 HENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGN--   89 (173)
T ss_dssp             EEECCSGGGCSEEETTTEEEEEESTTTCTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSC--
T ss_pred             ecCCCCcccCCccCCCCeEEEEecHHHhhhhhhccceEEEEEEcCCcEecCccCCCCcEEEEEEecceEEEEEeCCCc--
Confidence            356654 344 5777899999999999999999999999999999999999999999999999999999999999763  


Q ss_pred             cccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCCHH
Q 040805          419 SSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESE  498 (540)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~e  498 (540)
                                         ++++.+|++|||++||+|++||++|+ +++++|++|.++. ++..   ++.+++|++||++
T Consensus        90 -------------------~~~~~~l~~Gdv~~iP~G~~h~~~n~-~~~~~~v~~~~~~-~~~~---~~~~s~l~~~p~e  145 (173)
T d1od5a2          90 -------------------AVFDGELRRGQLLVVPQNFVVAEQGG-EQGLEYVVFKTHH-NAVS---SYIKDVFRAIPSE  145 (173)
T ss_dssp             -------------------EEEEEEEETTCEEEECTTCEEEEEEE-EEEEEEEEEESST-TCCE---EEHHHHHHHSCHH
T ss_pred             -------------------eEEeEEecCCcEEEECCCCEEEEEcC-CCceEEEEeecCC-chhh---hhHHHHHHhCCHH
Confidence                               68888999999999999999999886 5789999987654 3333   3346999999999


Q ss_pred             HHHHHcCCCHHHHHHhhcCCCCceEEcC
Q 040805          499 AKELAFNTRADEVERVFGNQDQDWFFKG  526 (540)
Q Consensus       499 vla~AF~vs~e~v~kl~~~q~e~~f~~~  526 (540)
                      ||++||+++.+++++|+.+|++..|+++
T Consensus       146 vl~~af~v~~e~v~~lk~~~~~~~i~~P  173 (173)
T d1od5a2         146 VLSNSYNLGQSQVRQLKYQGNSGPLVNP  173 (173)
T ss_dssp             HHHHHHTCCHHHHHHHHHSSCSSSEECC
T ss_pred             HHHHHhCcCHHHHHHHHhcCCCCcccCc
Confidence            9999999999999999999988888865

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=100.00  E-value=4.2e-33  Score=259.04  Aligned_cols=154  Identities=27%  Similarity=0.475  Sum_probs=135.4

Q ss_pred             cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCc
Q 040805          350 SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSST  429 (540)
Q Consensus       350 ~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~  429 (540)
                      +++|++|.+++++.      +.+||++++++|+||||++|||||+|++|+||++|+|+++||+|++.+            
T Consensus         2 ~~~n~fg~~~~~~~------n~l~~~v~~~~l~p~~~~~PH~h~~A~~i~~V~~G~g~v~~v~~~g~~------------   63 (162)
T d2phla2           2 TIGNEFGNLTERTD------NSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNK------------   63 (162)
T ss_dssp             EEEETTEEEEEEEE------TTTTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--------------
T ss_pred             ccccccCceeecCC------CCCCeEEEEEEECCCcEeCCccCCCCCEEEEEEEeeeEEEEEecCCcc------------
Confidence            47899999999985      456999999999999999999999999999999999999999998742            


Q ss_pred             cccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCcccccccccc------ccccCCHHHHHHH
Q 040805          430 REEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNK------IFKVMESEAKELA  503 (540)
Q Consensus       430 ~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~s------vl~~~~~evla~A  503 (540)
                         ....+++++.+|++|||++||+|++||++|++  +..+++|.+++.++..+||||..+      ++++||++||++|
T Consensus        64 ---~~~~~~~~~~~l~~Gdv~vvP~G~~~~~~n~~--~~~~v~~~~~~~~~~~~flaG~~~sv~~~~~~~~~~~evL~~a  138 (162)
T d2phla2          64 ---ETLEYESYRAELSKDDVFVIPAAYPVAIKATS--NVNFTGFGINANNNNRNLLAGKTDNVISSIGRALDGKDVLGLT  138 (162)
T ss_dssp             ---CCSCEEEEEEEEETTCEEEECTTCCEEEEESS--SEEEEEEEESCTTCCEEESSSSSSBHHHHHHTSTTHHHHHHHH
T ss_pred             ---ccccceeeEeeecCCcEEEECCCCEEEEEeCC--CceEEEEEecCCCCcceeecCccccchhhhcccCCCHHHHHHH
Confidence               11235789999999999999999999999975  577888888887889999999743      3467899999999


Q ss_pred             cCCCHHHHHHhhcCCCCceEEcC
Q 040805          504 FNTRADEVERVFGNQDQDWFFKG  526 (540)
Q Consensus       504 F~vs~e~v~kl~~~q~e~~f~~~  526 (540)
                      |+++.+++++|+.+|++++|+..
T Consensus       139 F~v~~eevekl~~~q~e~~~v~a  161 (162)
T d2phla2         139 FSGSGDEVMKLINKQSGSYFVDA  161 (162)
T ss_dssp             SSSCHHHHHHHHTTCCCCSEEEC
T ss_pred             hCCCHHHHHHHHhhCCceEEEeC
Confidence            99999999999999999999865

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.97  E-value=4.2e-32  Score=260.41  Aligned_cols=172  Identities=17%  Similarity=0.211  Sum_probs=143.6

Q ss_pred             CceeEcC-CCCCcccCCCceEEEecCC--CCCCCccc-cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCC
Q 040805          339 RGTFNLF-GKRPSHSNNFGELFEADSN--DFRPLEDL-DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPH  414 (540)
Q Consensus       339 ~~~fnL~-~~~P~~~n~~G~~~~~~~~--~~p~L~~l-~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~  414 (540)
                      ++.|+.. +-+|.|+|++|++++++..  +.++|+++ +++++.++|+||||++||| +||++|+||++|+|+++||+|+
T Consensus         3 p~~f~~~~~f~~~~~~e~G~i~~l~~f~~~~~~l~~l~~~~v~~~~i~P~~l~lP~~-~nA~~i~yV~~G~G~v~~v~p~   81 (200)
T d2phla1           3 PFYFNSDNSWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQ-ADAELLLVVRSGSAILVLVKPD   81 (200)
T ss_dssp             TTEECGGGTEEEEEEETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEE-ESEEEEEEEEESEEEEEEEETT
T ss_pred             CeecCchhcccceeECCCccEEEeccccccchhhhcccceEEEEEEecCCceeeeec-CCCCEEEEEEeeeEEEEEEECC
Confidence            3455443 3468899999999999874  57889987 7999999999999999999 6999999999999999999998


Q ss_pred             CCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEec-CCCCEEEEEEE--ecCCCCcccccccc---
Q 040805          415 VSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS-QNNNLEVVCFE--INAEGNIRFPLAGR---  488 (540)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~-~~e~l~~v~F~--~~a~~~~~~~LAG~---  488 (540)
                      ++.                 ..+.....+|++||||+||+|++||++|. ++++|++++|.  .|+.++..+||||.   
T Consensus        82 ~~~-----------------~~~~~~~~~l~~GDv~~iPaG~~~~~~n~~~~~~l~~~~l~~~~n~~~~~~f~lag~~~~  144 (200)
T d2phla1          82 DRR-----------------EYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQ  144 (200)
T ss_dssp             TEE-----------------EEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSSSSCCEEECCCBTTB
T ss_pred             CCc-----------------eeehhhccCccCCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCCCccccceecccccc
Confidence            842                 11234556899999999999999999985 46789998874  34445678899986   


Q ss_pred             ccccccCCHHHHHHHcCCCHHHHHHhhcC---CCCceEEcCCC
Q 040805          489 NKIFKVMESEAKELAFNTRADEVERVFGN---QDQDWFFKGPS  528 (540)
Q Consensus       489 ~svl~~~~~evla~AF~vs~e~v~kl~~~---q~e~~f~~~~~  528 (540)
                      .|||++|+++||++|||++.+++++|+..   |++.+|++.++
T Consensus       145 ~svl~~f~~evLa~aF~v~~e~~~kl~~~~~~q~~g~Iv~~~~  187 (200)
T d2phla1         145 QSYLQEFSKHILEASFNSKFEEINRVLFEEEGQQEGVIVNIDS  187 (200)
T ss_dssp             CCGGGGSCHHHHHHHHTSCHHHHHHHHTCSTTCBSSSEEECCT
T ss_pred             ccHhHcCCHHHHHHHcCCCHHHHHHHHhccccccCCceEEcCH
Confidence            48999999999999999999999999853   45678999876

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=99.97  E-value=3.6e-31  Score=259.91  Aligned_cols=183  Identities=18%  Similarity=0.278  Sum_probs=141.1

Q ss_pred             EcCCCCC--cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCc-
Q 040805          343 NLFGKRP--SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSS-  419 (540)
Q Consensus       343 nL~~~~P--~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~-  419 (540)
                      +|....|  .+..++|.+..|| .+.|+|+|+||++.+++|+|+||++||| ++|+.|+||++|+|+++||+|+++..- 
T Consensus         7 ~L~a~eP~~r~~sE~G~~E~wd-~~~~qlqcagV~~~r~~I~p~gL~lP~y-s~a~~i~yV~qG~G~~giv~Pgc~et~~   84 (245)
T d1od5a1           7 NLNALEPDHRVESEGGLIETWN-SQHPELQCAGVTVSKRTLNRNGLHLPSY-SPYPQMIIVVQGKGAIGFAFPGCPETFE   84 (245)
T ss_dssp             CCCCBCCCEEEEETTEEEEECC-TTSHHHHHHTCEEEEEEECTTEEEEEEE-CSSCEEEEEEECEEEEEECCTTCCCCEE
T ss_pred             ccccCCCchhhcccCCeEEeCC-CCCHHHhhcCceeEEEEEcCCccccccc-cCCCeEEEEEeCEEEEEEEeCCChhhhc
Confidence            3445556  4667899887777 6679999999999999999999999999 899999999999999999999997421 


Q ss_pred             -ccc-cccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE-EecCC------CCcccccccc--
Q 040805          420 -SER-RHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF-EINAE------GNIRFPLAGR--  488 (540)
Q Consensus       420 -~~~-~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F-~~~a~------~~~~~~LAG~--  488 (540)
                       +.+ .+++++++++....++....+|++||||+||||++||++|++|++|++|++ ++++.      ++..++|||.  
T Consensus        85 ~~~~~~~~~~~~~~~~~~d~~qk~~rl~~GDVi~iPAG~~~w~yNdgn~~Lv~v~~~d~~N~~NQLd~~~r~F~laG~~~  164 (245)
T d1od5a1          85 KPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPD  164 (245)
T ss_dssp             ECC---------------EEESCEEEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTTCTTCCSCSSCCCEESSSCCC
T ss_pred             chhhcccccccccccccccceeeeecccCCCEEEECCCceEEEEeCCCCcEEEEEEEcccCcccccCCcceeEEecCCcc
Confidence             111 111111111111223445589999999999999999999999999999986 44432      2468999996  


Q ss_pred             -------------------------------ccccccCCHHHHHHHcCCCHHHHHHhhc-CCCCceEEcCC
Q 040805          489 -------------------------------NKIFKVMESEAKELAFNTRADEVERVFG-NQDQDWFFKGP  527 (540)
Q Consensus       489 -------------------------------~svl~~~~~evla~AF~vs~e~v~kl~~-~q~e~~f~~~~  527 (540)
                                                     +|||++|+.++|+.||||+.+++++|+. ++....||.-.
T Consensus       165 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~nif~gF~~~~La~Af~v~~e~~~klq~~~~~rG~IVrv~  235 (245)
T d1od5a1         165 IEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVE  235 (245)
T ss_dssp             CSCTTTTC---------------------CCCCTTTTSCHHHHHHHTTCCHHHHHHTTCTTCCSCSEEECS
T ss_pred             cccchhcccchhhhhcccccccccccccccCCCeeecCCHHHHHHHHCCCHHHHHHHhCcccCCCcEEEEc
Confidence                                           3899999999999999999999999995 44556777654

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=99.97  E-value=1.2e-30  Score=245.87  Aligned_cols=165  Identities=21%  Similarity=0.290  Sum_probs=138.4

Q ss_pred             CceeEcCCCCCcccCCCceEEEecC--CCCCCCccc-cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCC
Q 040805          339 RGTFNLFGKRPSHSNNFGELFEADS--NDFRPLEDL-DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHV  415 (540)
Q Consensus       339 ~~~fnL~~~~P~~~n~~G~~~~~~~--~~~p~L~~l-~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~  415 (540)
                      ++.|++.+.+|+|+|++|+++.++.  .+.++|+++ ++++.+++|+||||++||| ++|++|+||++|+|+++||+|++
T Consensus         3 py~F~~~~~~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~-~~a~ev~yV~~G~g~v~~v~~~~   81 (178)
T d1dgwa_           3 PYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHH-SDSDLLVLVLEGQAILVLVNPDG   81 (178)
T ss_dssp             TTEECGGGEEEEEEETTEEEEEECCTTSSCGGGGGGTTEEEEEEEECTTEEEEEEE-ESSEEEEEEEESEEEEEEEETTE
T ss_pred             CeeccccccccceECCCCcEEEecccCCcchhccCccceEEEEEEecCCccccccc-CCCCEEEEEEEeEEEEEEecCCc
Confidence            4578888888999999999988875  446789988 6999999999999999997 89999999999999999999965


Q ss_pred             CCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEec-CCCCEEEEEEEecCC--CCcc-ccccc---c
Q 040805          416 SRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS-QNNNLEVVCFEINAE--GNIR-FPLAG---R  488 (540)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~-~~e~l~~v~F~~~a~--~~~~-~~LAG---~  488 (540)
                                             ..+.+|++|||++||+|++||++|. ++++|.+++|.+++.  ++.. ++++|   .
T Consensus        82 -----------------------~~~~~l~~GDv~~iP~G~~h~~~N~~~~e~l~i~~~~~~~n~~~~~~~f~~~~~~~~  138 (178)
T d1dgwa_          82 -----------------------RDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRL  138 (178)
T ss_dssp             -----------------------EEEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESSCCSSC
T ss_pred             -----------------------eEEEEecCCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCCCccccccccccccCc
Confidence                                   3456899999999999999999985 557899998865442  2333 34444   3


Q ss_pred             ccccccCCHHHHHHHcCCCHHHHHHhhcCCC-CceEEcCC
Q 040805          489 NKIFKVMESEAKELAFNTRADEVERVFGNQD-QDWFFKGP  527 (540)
Q Consensus       489 ~svl~~~~~evla~AF~vs~e~v~kl~~~q~-e~~f~~~~  527 (540)
                      .|||++||++||++||+++.+++++|+..|+ +..|+..|
T Consensus       139 ~svl~~~~~evL~~aF~v~~e~~~kl~~~~~~~g~Iv~~P  178 (178)
T d1dgwa_         139 PSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMP  178 (178)
T ss_dssp             CCGGGGSCHHHHHHHHTSCHHHHHHHTTSCCSSSSEEECC
T ss_pred             ccHHHhCCHHHHHHHhCCCHHHHHHHHhcccCCCcEEeCc
Confidence            6899999999999999999999999986664 55788765

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=99.97  E-value=6e-31  Score=257.43  Aligned_cols=184  Identities=16%  Similarity=0.242  Sum_probs=140.8

Q ss_pred             EcCCCCC--cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcc
Q 040805          343 NLFGKRP--SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSS  420 (540)
Q Consensus       343 nL~~~~P--~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~  420 (540)
                      +|....|  .+.+++|.+..|+ .+.++|+|+||++.+++|+|+||++||| +||+.|+||++|+|+++||+|+++..-.
T Consensus         7 ~L~a~eP~~ri~sE~G~~E~~d-~~~~qlqcagV~~~r~~I~p~gL~lP~y-~~a~~i~yV~qG~G~~g~v~pgc~et~~   84 (239)
T d1fxza1           7 KLNALKPDNRIESEGGLIETWN-PNNKPFQCAGVALSRCTLNRNALRRPSY-TNGPQEIYIQQGKGIFGMIYPGCPSTFE   84 (239)
T ss_dssp             CCCCBCCSCEEEETTEEEEECC-TTSHHHHHHTCEEEEEEECTTEEEEEEE-ESSCEEEEEEECCEEEEEECTTCCCC--
T ss_pred             ccccCCCchhhccCCceEEecC-CCChhhhhccchhheeeeccCceeccee-cCCCeEEEEEeCEEEEEEecCCChhhhc
Confidence            4555566  4889999887777 5669999999999999999999999999 8999999999999999999999973211


Q ss_pred             cccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE-EecCCC------Ccccccccc-----
Q 040805          421 ERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF-EINAEG------NIRFPLAGR-----  488 (540)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F-~~~a~~------~~~~~LAG~-----  488 (540)
                      .+.+...+++++....++....+|++||||+||||++||++|++|++|++|++ ++++..      +..++|||+     
T Consensus        85 ~~~~~~~~~~~~~~~d~~qk~~~lr~GDVi~iPAG~~~w~~N~gn~~Lv~v~~~d~~n~~NQLd~~~r~F~laG~~~~e~  164 (239)
T d1fxza1          85 EPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEF  164 (239)
T ss_dssp             ----------------CCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTT
T ss_pred             ccccccccccccccchhhhhhhccccCCEEEecCCceEEEEeCCCCcEEEEEEeccccccccccccceeeeccCCccccc
Confidence            11111011111111122444579999999999999999999999999999984 655533      357899997     


Q ss_pred             -------------------------ccccccCCHHHHHHHcCCCHHHHHHhhcCCC---CceEEcCCC
Q 040805          489 -------------------------NKIFKVMESEAKELAFNTRADEVERVFGNQD---QDWFFKGPS  528 (540)
Q Consensus       489 -------------------------~svl~~~~~evla~AF~vs~e~v~kl~~~q~---e~~f~~~~~  528 (540)
                                               +|||++|+.++|+.||||+.++++||+..+.   ...|+.-..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~ni~~gFs~~~La~Afnv~~e~~~klq~~~~~~~rG~IVrv~~  232 (239)
T d1fxza1         165 LKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKG  232 (239)
T ss_dssp             HHHHC-------------------CCCGGGGSCHHHHHHHHTCCHHHHHHHSCC-----CCSEEECSS
T ss_pred             ccccccccccccccccccccccccCCCcccccCHHHHHHHHCcCHHHHHHHhcccccccCCCEEEEcC
Confidence                                     3899999999999999999999999997652   357776543

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=99.97  E-value=4.5e-30  Score=246.62  Aligned_cols=158  Identities=18%  Similarity=0.292  Sum_probs=131.8

Q ss_pred             CceeEcCCCCCcccCCCceEEEecCCCC--CCCccc-cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCC
Q 040805          339 RGTFNLFGKRPSHSNNFGELFEADSNDF--RPLEDL-DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHV  415 (540)
Q Consensus       339 ~~~fnL~~~~P~~~n~~G~~~~~~~~~~--p~L~~l-~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~  415 (540)
                      ++.|++.+.++.|+|++|++++++..+.  +.|+++ ++++++++|+||||++||| ++|++|+||++|+|+++||+|++
T Consensus         2 py~F~~~~~~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~-~~a~ev~yV~~G~g~~~~v~~~~   80 (203)
T d1uika1           2 PFHFNSKRFQTLFKNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHH-ADADYLIVILNGTAILTLVNNDD   80 (203)
T ss_dssp             TTEECGGGEEEEEECSSEEEEEECCTTSSCGGGGGGTTCEEEEEEECSSEEEEEEE-ESEEEEEEEEESEEEEEEECSSC
T ss_pred             CeeeccccccCceECCCCeEEEecccCccchhhccccceEEEEEEecCCCcccccc-CCCcEEEEEEEEEEEEEEEeCCC
Confidence            4578877778999999999999987553  567776 8999999999999999998 69999999999999999999976


Q ss_pred             CCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCC-CCEEEEEEEecC--CCCcc-cccccc---
Q 040805          416 SRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQN-NNLEVVCFEINA--EGNIR-FPLAGR---  488 (540)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~-e~l~~v~F~~~a--~~~~~-~~LAG~---  488 (540)
                      .                       .+.+|++|||++||+|++||++|.++ +.|.|++|.+++  .++.. ++++|.   
T Consensus        81 ~-----------------------~~~~l~~GDv~~iP~G~~~~~~N~~~~e~l~iv~~~~~~n~~~~~~~f~~~g~~~~  137 (203)
T d1uika1          81 R-----------------------DSYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPVNKPGRFESFFLSSTQAQ  137 (203)
T ss_dssp             E-----------------------EEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCSSC
T ss_pred             e-----------------------EEEEecCCCEEEECCCCeEEEEECCCCccEEEEEEecCCCCcccccccccccCccc
Confidence            2                       24689999999999999999999654 689999885543  33333 455553   


Q ss_pred             ccccccCCHHHHHHHcCCCHHHHHHhhcCCCC
Q 040805          489 NKIFKVMESEAKELAFNTRADEVERVFGNQDQ  520 (540)
Q Consensus       489 ~svl~~~~~evla~AF~vs~e~v~kl~~~q~e  520 (540)
                      .|||++||++||++||+++.+++++|+..|.+
T Consensus       138 ~~vl~gf~~~vL~~aF~v~~e~~~kl~~~q~~  169 (203)
T d1uika1         138 QSYLQGFSKNILEASYDTKFEEINKVLFGREE  169 (203)
T ss_dssp             CCGGGGSCHHHHHHHHTSCHHHHHHHTTC---
T ss_pred             cchhHhCCHHHHHHHhCCCHHHHHHHHhcccc
Confidence            58999999999999999999999999988765

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=99.97  E-value=6.5e-30  Score=242.24  Aligned_cols=157  Identities=18%  Similarity=0.282  Sum_probs=128.3

Q ss_pred             CcccceeecCCceEEEeccCccccccccccccceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCc-----
Q 040805          147 DEESSRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNR-----  220 (540)
Q Consensus       147 ~~f~~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~-----  220 (540)
                      .+..++|++++|+++.++  ..+.|.|+++ ++.++.++|+||++++|||| +|++|+||++|+|++++|+|++.     
T Consensus        13 ~~~~p~~~n~~G~~~~~~--~~~~p~L~~~-~v~~~~~~l~p~~~~~Ph~h~~A~~i~~V~~G~g~v~~v~~~~~~~~~~   89 (185)
T d1uika2          13 RSRDPIYSNKLGKLFEIT--PEKNPQLRDL-DVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIELVGIKEQQQRQQ   89 (185)
T ss_dssp             TSSCCSEESSSEEEEEEC--TTTCHHHHHH-TEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC--------
T ss_pred             ccCCCceeCCCCeEEEeC--hhhChhhhhc-CchhheeecCCCceeeeeecCCCCEEEEEEeeEEEEEEEccCccchhhc
Confidence            344688999999999995  4567999954 45566669999999999985 99999999999999999999863     


Q ss_pred             ----------eEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHH
Q 040805          221 ----------ESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILES  290 (540)
Q Consensus       221 ----------~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~  290 (540)
                                .+++|++||||+||+|++||++|+++   +.++++..+..+   ...+|++|+.+  |+|++||++||++
T Consensus        90 ~~~~~~~~~~~~~~l~~GDv~viP~G~~~~~~n~~d---~~~v~~~~~~~~---~~~~f~ag~~~--~vl~~~~~evLa~  161 (185)
T d1uika2          90 QEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSD---LNFFAFGINAEN---NQRNFLAGSKD--NVISQIPSQVQEL  161 (185)
T ss_dssp             ----CBCCEEEEEEECTTCEEEECTTCCEEEEESSS---EEEEEEEETCTT---CCEEESSSSSS--BGGGGSCHHHHHH
T ss_pred             cccccCcceeEEEEecCCcEEEECCCCEEEEEcCCC---ccEEEEEEcCCC---Ccccccccccc--cccccCCHHHHHH
Confidence                      46799999999999999999999863   445544433322   23566777643  8999999999999


Q ss_pred             hcCCCHHHHHHHhccCCCCcEEEc
Q 040805          291 AFKTKRDSLERVLFQQDQGAMVKA  314 (540)
Q Consensus       291 Af~v~~~~v~~l~~~q~~g~Iv~~  314 (540)
                      |||++.+++++|++.|++++|+++
T Consensus       162 aF~v~~~~~~kl~~~q~e~~i~~a  185 (185)
T d1uika2         162 AFPGSAKDIENLIKSQSESYFVDA  185 (185)
T ss_dssp             HSSSCHHHHHHHHHHCCSCSEEEC
T ss_pred             HhCCCHHHHHHHHhcCCceEEecC
Confidence            999999999999999999999975

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=99.96  E-value=2.8e-28  Score=228.82  Aligned_cols=155  Identities=17%  Similarity=0.204  Sum_probs=130.8

Q ss_pred             cCCcccceeecCCceEEEeccCcccccccc--ccccceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCce
Q 040805          145 EGDEESSRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRE  221 (540)
Q Consensus       145 ~~~~f~~~~~~e~G~i~~l~~f~~~~~~L~--Gi~~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~  221 (540)
                      ++.+-.+++.+++|+|+.++++  +.|.|.  |++.+|+   +|+|||+++|||| +|++|+||++|+|++++|++++.+
T Consensus        11 ~~~~~~d~~~~~gG~i~~~~~~--~fP~L~~~~~s~~~~---~l~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~g~~   85 (174)
T d1fxza2          11 GQTSSPDIYNPQAGSVTTATSL--DFPALSWLRLSAEFG---SLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGER   85 (174)
T ss_dssp             SSSSCCSEEETTTEEEEEECTT--TSGGGTTTTCCEEEE---EECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCE
T ss_pred             CCCCCCCcCcCCCeEEEEecHH--HhhhhhhcCceEEEe---eecCCCEeCCccCCCCCEEEEEEecceEEEEecCCCce
Confidence            3445567899999999999654  468888  5666666   9999999999996 999999999999999999998654


Q ss_pred             --EEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHH
Q 040805          222 --SYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSL  299 (540)
Q Consensus       222 --~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v  299 (540)
                        +++|++|||++||+|++||+.|.+  +.+.+++++. ..+|   ..++++|..   +||++||++||++||+++.+++
T Consensus        86 ~~~~~l~~Gdv~vvP~G~~h~~~n~~--~~~~~v~~~~-~~~~---~~~~lag~~---s~l~~~~~~vl~~af~v~~eei  156 (174)
T d1fxza2          86 VFDGELQEGRVLIVPQNFVVAARSQS--DNFEYVSFKT-NDTP---MIGTLAGAN---SLLNALPEEVIQHTFNLKSQQA  156 (174)
T ss_dssp             EEEEEEETTCEEEECTTCEEEEEECS--TTEEEEEEES-SSSC---CEEESSSTT---CTGGGSCHHHHHHHHTCCHHHH
T ss_pred             eEEEEEcCCcEEEECCCCEEEEEeCC--CCeEEEEEEc-cCCC---Ccccccchh---hhhhcCCHHHHHHHHCcCHHHH
Confidence              557999999999999999999975  3677777773 4434   356788865   8999999999999999999999


Q ss_pred             HHHhccCCCCcEEE
Q 040805          300 ERVLFQQDQGAMVK  313 (540)
Q Consensus       300 ~~l~~~q~~g~Iv~  313 (540)
                      ++|++.|++++|+.
T Consensus       157 ~~lk~~q~~~~~~~  170 (174)
T d1fxza2         157 RQIKNNNPFKFLVP  170 (174)
T ss_dssp             HHHHHSCCCSSEEC
T ss_pred             HHHHhcCCceEeCC
Confidence            99999998888774

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=99.95  E-value=1.3e-28  Score=230.18  Aligned_cols=154  Identities=16%  Similarity=0.234  Sum_probs=128.5

Q ss_pred             CceeEcCCC---CCcccCCCceEEEecC--CCCCCCccc-cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEc
Q 040805          339 RGTFNLFGK---RPSHSNNFGELFEADS--NDFRPLEDL-DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIAC  412 (540)
Q Consensus       339 ~~~fnL~~~---~P~~~n~~G~~~~~~~--~~~p~L~~l-~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~  412 (540)
                      ..||.+..+   ++.|+|++|++++++.  .+.|+|+++ ++++++++|+||||++||| ++|++|+||++|+|+++||+
T Consensus         3 ~~P~~f~~~~~f~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~~~~Ph~-~~a~ei~yV~~G~g~v~~v~   81 (170)
T d1uija1           3 NNPFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHH-ADADFLLFVLSGRAILTLVN   81 (170)
T ss_dssp             SCTTEECGGGSEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEE-ESEEEEEEEEESCEEEEEEC
T ss_pred             CCCeecccccccccccccCCCcEEEEecccccchhhcchhheEEEEEEecCCccccccc-CCCCEEEEEEEEEEEEEEEe
Confidence            346666543   4689999999999886  457899998 5999999999999999996 89999999999999999999


Q ss_pred             CCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCC-CCEEEEEEEecC--CCCccccc-ccc
Q 040805          413 PHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQN-NNLEVVCFEINA--EGNIRFPL-AGR  488 (540)
Q Consensus       413 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~-e~l~~v~F~~~a--~~~~~~~L-AG~  488 (540)
                      |++.                       .+.+|++|||++||+|++||++|.++ +.|.|++|..++  .++...|+ +|.
T Consensus        82 ~~~~-----------------------~~~~l~~GDv~~vP~G~~h~~~n~~~~~~l~iv~~~~~~n~~~~~~~f~~~~~  138 (170)
T d1uija1          82 NDDR-----------------------DSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSST  138 (170)
T ss_dssp             SSCE-----------------------EEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEESSCB
T ss_pred             CCCc-----------------------EEEEecCCcEEEECCCCeEEEEEcCCCCcEEEEEecCCcCCCccccccccccC
Confidence            9762                       34689999999999999999999754 679998876443  33334444 443


Q ss_pred             ---ccccccCCHHHHHHHcCCCHHHHHHhhc
Q 040805          489 ---NKIFKVMESEAKELAFNTRADEVERVFG  516 (540)
Q Consensus       489 ---~svl~~~~~evla~AF~vs~e~v~kl~~  516 (540)
                         .|||++||++||++||+++.+++++|+.
T Consensus       139 ~~~~svl~~~~~evLa~aF~v~~e~i~kl~~  169 (170)
T d1uija1         139 QAQQSYLQGFSHNILETSFHSEFEEINRVLF  169 (170)
T ss_dssp             SSCCCGGGGSCHHHHHHHHTSCHHHHHHHHT
T ss_pred             CCcccHhHhCCHHHHHHHhCCCHHHHHHHhc
Confidence               5999999999999999999999999974

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.95  E-value=3.4e-28  Score=232.97  Aligned_cols=146  Identities=16%  Similarity=0.210  Sum_probs=124.6

Q ss_pred             cccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCc
Q 040805          350 SHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSST  429 (540)
Q Consensus       350 ~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~  429 (540)
                      .....+|.++.++..+||+|++||||+++++|.||||+.|||||+|+||+||++|+++++++.+....            
T Consensus        48 ~~~~~g~~vt~~~~~~fP~Ln~lglS~~rv~l~pgg~~~PH~Hp~A~Ei~yV~~G~~~v~~v~~~~~~------------  115 (201)
T d2et1a1          48 TSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSG------------  115 (201)
T ss_dssp             CCSTTSEEEEEESTTTCGGGTTSSCEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEEECCGGGT------------
T ss_pred             ccCCCCcEEEEeehhcCccccccceeEEEEEECCCCCcCCcccCCCCEEEEEEcceEEEEEEeccCCC------------
Confidence            44456779999999999999999999999999999999999999999999999999999999864210            


Q ss_pred             cccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCcccccccccccc---ccCCHHHHHHHcCC
Q 040805          430 REEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIF---KVMESEAKELAFNT  506 (540)
Q Consensus       430 ~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl---~~~~~evla~AF~v  506 (540)
                             -+.++..|++||||+||+|++||++|.+++++.++++. +++++..+.++  ..++   .+||.+||++||++
T Consensus       116 -------~~~~~~~l~~GDv~vvP~G~~H~~~N~g~~~a~~i~~f-~s~~pg~~~~~--~~~f~~~~~~p~eVLa~af~i  185 (201)
T d2et1a1         116 -------NKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSF-NSQNPGIVFVP--LTLFGSDPPIPTPVLTKALRV  185 (201)
T ss_dssp             -------TCEEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEE-SSSCCCCEEHH--HHHHHCSSCCCHHHHHHHHTS
T ss_pred             -------ceeEEEEecCCCEEEECCCCeEEEEEcCCCCEEEEEEe-cCCCCcceehh--hhhhccCCCCCHHHHHHHhCC
Confidence                   16788899999999999999999999999887766532 44477777665  2344   45999999999999


Q ss_pred             CHHHHHHhhcC
Q 040805          507 RADEVERVFGN  517 (540)
Q Consensus       507 s~e~v~kl~~~  517 (540)
                      +.+++++|+..
T Consensus       186 ~~~~v~kLks~  196 (201)
T d2et1a1         186 EAGVVELLKSK  196 (201)
T ss_dssp             CHHHHHHHHHT
T ss_pred             CHHHHHHHHhh
Confidence            99999999753

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.94  E-value=2.3e-27  Score=220.08  Aligned_cols=148  Identities=12%  Similarity=0.160  Sum_probs=116.8

Q ss_pred             eeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccc-cCCCeEEEEEeeEEEEEEEecCCce--------E
Q 040805          152 RVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTH-LDADAVFFVSWGQGTITVIRENNRE--------S  222 (540)
Q Consensus       152 ~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~-~~A~ei~yV~~G~g~ig~V~~~~~~--------~  222 (540)
                      .+.|+.|.+..+   +      .+.-+++++.++|+||++++||| ++|++|+||++|+|++++|+|++..        +
T Consensus         2 ~~~n~fg~~~~~---~------~n~l~~~v~~~~l~p~~~~~PH~h~~A~~i~~V~~G~g~v~~v~~~g~~~~~~~~~~~   72 (162)
T d2phla2           2 TIGNEFGNLTER---T------DNSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYR   72 (162)
T ss_dssp             EEEETTEEEEEE---E------ETTTTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEE
T ss_pred             ccccccCceeec---C------CCCCCeEEEEEEECCCcEeCCccCCCCCEEEEEEEeeeEEEEEecCCccccccceeeE
Confidence            466788877775   2      23346788888999999999998 5899999999999999999987542        5


Q ss_pred             EeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCC-c--ccccccCCHHHHHHhcCCCHHHH
Q 040805          223 YNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGEN-P--ESFLRAFSWEILESAFKTKRDSL  299 (540)
Q Consensus       223 ~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~-~--~s~l~~f~~evLa~Af~v~~~~v  299 (540)
                      .+|++||||+||+|++||++|++ +  ..++++..++  ++.. .+||||+.+ .  ..++++||++||++||+++.+++
T Consensus        73 ~~l~~Gdv~vvP~G~~~~~~n~~-~--~~~v~~~~~~--~~~~-~~flaG~~~sv~~~~~~~~~~~evL~~aF~v~~eev  146 (162)
T d2phla2          73 AELSKDDVFVIPAAYPVAIKATS-N--VNFTGFGINA--NNNN-RNLLAGKTDNVISSIGRALDGKDVLGLTFSGSGDEV  146 (162)
T ss_dssp             EEEETTCEEEECTTCCEEEEESS-S--EEEEEEEESC--TTCC-EEESSSSSSBHHHHHHTSTTHHHHHHHHSSSCHHHH
T ss_pred             eeecCCcEEEECCCCEEEEEeCC-C--ceEEEEEecC--CCCc-ceeecCccccchhhhcccCCCHHHHHHHhCCCHHHH
Confidence            68999999999999999999986 3  3344443222  2223 456677543 1  23668999999999999999999


Q ss_pred             HHHhccCCCCcEEEc
Q 040805          300 ERVLFQQDQGAMVKA  314 (540)
Q Consensus       300 ~~l~~~q~~g~Iv~~  314 (540)
                      ++|+++|++++|+++
T Consensus       147 ekl~~~q~e~~~v~a  161 (162)
T d2phla2         147 MKLINKQSGSYFVDA  161 (162)
T ss_dssp             HHHHTTCCCCSEEEC
T ss_pred             HHHHhhCCceEEEeC
Confidence            999999999999986

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=99.94  E-value=6.8e-27  Score=219.08  Aligned_cols=152  Identities=19%  Similarity=0.356  Sum_probs=125.4

Q ss_pred             cCCcccceeecCCceEEEeccCcccccccc--ccccceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCce
Q 040805          145 EGDEESSRVTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRE  221 (540)
Q Consensus       145 ~~~~f~~~~~~e~G~i~~l~~f~~~~~~L~--Gi~~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~  221 (540)
                      +.++-.+.+.+++|+|..++.  .+.|.|.  |++..++   .|.||++++|||| +|++|+||++|++++++|++++..
T Consensus        16 ~~p~~~d~~n~~gG~i~~~~~--~~fP~L~~lgls~~~v---~L~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~~~~   90 (173)
T d1od5a2          16 ARPSRADFYNPKAGRISTLNS--LTLPALRQFGLSAQYV---VLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNA   90 (173)
T ss_dssp             CSGGGCSEEETTTEEEEEEST--TTCTTHHHHTCEEEEE---EECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCE
T ss_pred             CCcccCCccCCCCeEEEEecH--HHhhhhhhccceEEEE---EEcCCcEecCccCCCCcEEEEEEecceEEEEEeCCCce
Confidence            344556679999999999954  3468888  5555555   9999999999986 999999999999999999998754


Q ss_pred             --EEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHH
Q 040805          222 --SYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSL  299 (540)
Q Consensus       222 --~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v  299 (540)
                        +++|++|||++||+|++||+.|.+  +.+.+++++ +.. ++.  .+.      ..+||++||++||++||+++.+++
T Consensus        91 ~~~~~l~~Gdv~~iP~G~~h~~~n~~--~~~~~v~~~-~~~-~~~--~~~------~~s~l~~~p~evl~~af~v~~e~v  158 (173)
T d1od5a2          91 VFDGELRRGQLLVVPQNFVVAEQGGE--QGLEYVVFK-THH-NAV--SSY------IKDVFRAIPSEVLSNSYNLGQSQV  158 (173)
T ss_dssp             EEEEEEETTCEEEECTTCEEEEEEEE--EEEEEEEEE-SST-TCC--EEE------HHHHHHHSCHHHHHHHHTCCHHHH
T ss_pred             EEeEEecCCcEEEECCCCEEEEEcCC--CceEEEEee-cCC-chh--hhh------HHHHHHhCCHHHHHHHhCcCHHHH
Confidence              557999999999999999999964  578888776 332 221  122      248999999999999999999999


Q ss_pred             HHHhccCCCCcEEE
Q 040805          300 ERVLFQQDQGAMVK  313 (540)
Q Consensus       300 ~~l~~~q~~g~Iv~  313 (540)
                      ++|+.++++|.||.
T Consensus       159 ~~lk~~~~~~~i~~  172 (173)
T d1od5a2         159 RQLKYQGNSGPLVN  172 (173)
T ss_dssp             HHHHHSSCSSSEEC
T ss_pred             HHHHhcCCCCcccC
Confidence            99999999999873

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=99.90  E-value=3.3e-23  Score=213.50  Aligned_cols=265  Identities=12%  Similarity=0.104  Sum_probs=167.4

Q ss_pred             ceeeeeeeCCCcc--cccccc-CCCeEEEEEeeEEEEEEEecC-CceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEE
Q 040805          179 YRLGILIANPQTF--VTPTHL-DADAVFFVSWGQGTITVIREN-NRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK  254 (540)
Q Consensus       179 ~rl~~~~l~Pggl--~~Ph~~-~A~ei~yV~~G~g~ig~V~~~-~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~  254 (540)
                      +.+..+.+.||+.  .+|||| +++|++||++|++++.+.+.+ +.++++|++||+|+||+|++|++.|.++  +..++.
T Consensus        46 ~~~~~~~~~~g~~~g~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~~~~~~l~~GD~~~~P~g~~H~~~n~~~--~~~~l~  123 (348)
T d1juha_          46 FTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDP--DTEMTG  123 (348)
T ss_dssp             CEEEEEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECST--TEEEEE
T ss_pred             EEEEEEeeCCCCCCCCCccccccceEEEEEEeeEEEEEEeccCCceEEEEeCCCCEEEECCCCeEeeEeCCC--CcEEEE
Confidence            5566668999975  478988 578999999999999988765 4578999999999999999999999973  467776


Q ss_pred             EeecCCCCCcccccccCCCCCcccccccCCHHHH------HHhcCCCHHHHHHHhccCC----CCcEEEccchhhhccCC
Q 040805          255 FIKSINLPGQYEAFYGAGGENPESFLRAFSWEIL------ESAFKTKRDSLERVLFQQD----QGAMVKASKQQIRALSR  324 (540)
Q Consensus       255 i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evL------a~Af~v~~~~v~~l~~~q~----~g~Iv~~~~e~l~~l~~  324 (540)
                      ++.    |+.+..||.+.+.   ++.+..+..++      +.+..+....+.++.+...    ...+.......++.++.
T Consensus       124 v~~----pg~~e~~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
T d1juha_         124 VIV----PGGFEDLFYYLGT---NATDTTHTPYIPSSSDSSSTTGPDSSTISTLQSFDVYAELSFTPRTDTVNGTAPANT  196 (348)
T ss_dssp             EEE----SSCTTHHHHHHSE---ECCCTTCCSSCCC--------------CGGGGGGTCEECTTCCCCCCCBTTEESSSS
T ss_pred             EEC----CCcHHHHHHhhCC---chhccCCcccccccccchhhccCChhhhccccccccccccccCCccccccccccccc
Confidence            665    4456666665544   23333222222      2222344444444443211    11111111111111111


Q ss_pred             CCCCCCcCCC-----CCCCCceeEcCCC-CCcccC--CCceEEE---ecCCCCCCCccccceEEEEEEcCCCcccccccC
Q 040805          325 SQEGPSIWPF-----AGESRGTFNLFGK-RPSHSN--NFGELFE---ADSNDFRPLEDLDITVSYANISKGAMAAPFYNS  393 (540)
Q Consensus       325 ~~~~~s~~~~-----~~~~~~~fnL~~~-~P~~~n--~~G~~~~---~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~  393 (540)
                      .      |..     ......+|.+... .+.+.+  ..|.+..   .+...++.  ...+++..++|.||++..||||+
T Consensus       197 ~------~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~i~~~~~~~~~t~~~--~~~~~~~~~~~~pg~~~~~~~~~  268 (348)
T d1juha_         197 V------WHTGANALASTAGDPYFIANGWGPKYLNSQYGYQIVAPFVTATQAQDT--NYTLSTISMSTTPSTVTVPTWSF  268 (348)
T ss_dssp             C------SSSSCCCCCSSTTCCEEECTTCSCEEEECTTSCEEEEEEECHHHHGGG--CEEEEEEEECCCCTTSCCCCBCC
T ss_pred             c------ccccccccccccCcceEeecccCcccccccCCceEEeeeecccccCCc--ccceeEEEEEecCCCCCCCcccC
Confidence            1      211     1122347777653 343332  2333322   22222332  23688999999999999999999


Q ss_pred             CCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805          394 RSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       394 ~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F  473 (540)
                      ++++++||++|+++++|.+.                        +.  ..|++||+++||+|++|.+.|.+. ...++.|
T Consensus       269 ~~~e~~~vleG~~~~~i~~~------------------------~~--~~l~~GD~~~vP~g~~h~~~~~~~-~~~~~~~  321 (348)
T d1juha_         269 PGACAFQVQEGRVVVQIGDY------------------------AA--TELGSGDVAFIPGGVEFKYYSEAY-FSKVLFV  321 (348)
T ss_dssp             SSCEEEEEEESCEEEEETTS------------------------CC--EEECTTCEEEECTTCCEEEEESSS-SEEEEEE
T ss_pred             CCCEEEEEEeceEEEEeCCc------------------------ce--EEecCCCEEEECCCCcEEEEeCCC-CcEEEEE
Confidence            99999999999999998442                        12  369999999999999999988854 6677777


Q ss_pred             EecCCCCccccccc
Q 040805          474 EINAEGNIRFPLAG  487 (540)
Q Consensus       474 ~~~a~~~~~~~LAG  487 (540)
                      ..++.....+|+++
T Consensus       322 ~~~~~g~~~~~~~~  335 (348)
T d1juha_         322 SSGSDGLDQNLVNG  335 (348)
T ss_dssp             EESSSSHHHHHHHH
T ss_pred             EcCCCchHHHHHhc
Confidence            66554555666654

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.89  E-value=4.9e-23  Score=196.89  Aligned_cols=142  Identities=16%  Similarity=0.119  Sum_probs=116.2

Q ss_pred             eecCCceEEEeccCcccccccc--ccccceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecC----CceEEee
Q 040805          153 VTSQHGRVAFLPKFTQRSKLLR--GLEKYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIREN----NRESYNV  225 (540)
Q Consensus       153 ~~~e~G~i~~l~~f~~~~~~L~--Gi~~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~----~~~~~~l  225 (540)
                      ....+|++..++  ..+.|.|.  ||+.+|+   +|.|||+.+|||| +|+||+||++|+++++++.+.    ...+++|
T Consensus        49 ~~~~g~~vt~~~--~~~fP~Ln~lglS~~rv---~l~pgg~~~PH~Hp~A~Ei~yV~~G~~~v~~v~~~~~~~~~~~~~l  123 (201)
T d2et1a1          49 STPNGSAVTELD--VAEWPGTNTLGVSMNRV---DFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVV  123 (201)
T ss_dssp             CSTTSEEEEEES--TTTCGGGTTSSCEEEEE---EECTTCEEEEEECTTCCEEEEEEESCEEEEEECCGGGTTCEEEEEE
T ss_pred             cCCCCcEEEEee--hhcCccccccceeEEEE---EECCCCCcCCcccCCCCEEEEEEcceEEEEEEeccCCCceeEEEEe
Confidence            346789999884  44568888  6787777   9999999999997 899999999999999998742    3467899


Q ss_pred             CCCcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCCcccc-cccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhc
Q 040805          226 KRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPGQYEA-FYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLF  304 (540)
Q Consensus       226 ~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg~~~~-f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~  304 (540)
                      ++||+|+||+|++||++|+| +++++++++| ++.+|+.... +.+.      +.+.+||.|||++||+++.+++++|++
T Consensus       124 ~~GDv~vvP~G~~H~~~N~g-~~~a~~i~~f-~s~~pg~~~~~~~~f------~~~~~~p~eVLa~af~i~~~~v~kLks  195 (201)
T d2et1a1         124 RAGETFVIPRGLMHFQFNVG-KTEAYMVVSF-NSQNPGIVFVPLTLF------GSDPPIPTPVLTKALRVEAGVVELLKS  195 (201)
T ss_dssp             CTTCEEEECTTCCEEEEECS-SSCEEEEEEE-SSSCCCCEEHHHHHH------HCSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred             cCCCEEEECCCCeEEEEEcC-CCCEEEEEEe-cCCCCcceehhhhhh------ccCCCCCHHHHHHHhCCCHHHHHHHHh
Confidence            99999999999999999998 5688888888 5667875442 1111      223469999999999999999999987


Q ss_pred             cCC
Q 040805          305 QQD  307 (540)
Q Consensus       305 ~q~  307 (540)
                      +-.
T Consensus       196 ~f~  198 (201)
T d2et1a1         196 KFA  198 (201)
T ss_dssp             TTT
T ss_pred             hcc
Confidence            654

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.89  E-value=1.8e-23  Score=217.12  Aligned_cols=154  Identities=13%  Similarity=0.171  Sum_probs=129.7

Q ss_pred             eeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcc
Q 040805          341 TFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSS  420 (540)
Q Consensus       341 ~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~  420 (540)
                      +|++...+   -..+|++++++..+||+|+  +|++..+.|.||||++||||++| +|+||++|++++++|++++     
T Consensus        44 ~f~~~~~~---~~~gg~~r~~~~~~lp~~~--~~a~~~~~L~pga~~~pH~H~~a-e~~yVl~G~~~vt~Vd~~G-----  112 (372)
T d1j58a_          44 SFSDTHNR---LEKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEKG-----  112 (372)
T ss_dssp             CGGGSCCE---EETTEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEESSC-EEEEEEEEEEEEEEECTTS-----
T ss_pred             cccccccc---ccCCCeeEEeehhhChhhh--hhhheEEEECCCcCcCCcccCcc-cEEEEEeCEEEEEEEeCCC-----
Confidence            55555554   2578999999999999998  69999999999999999999987 8999999999999999987     


Q ss_pred             cccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCCHHHH
Q 040805          421 ERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAK  500 (540)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evl  500 (540)
                                       +.+..+|++|||++||+|++|++.|. +++++|+.+.++. ++....+++.+++|+++|.+||
T Consensus       113 -----------------~~~~~~l~~GDv~~~P~G~~H~i~n~-~dg~e~l~vf~~~-~~~~~~~f~~~~~~~~~p~evL  173 (372)
T d1j58a_         113 -----------------RSFIDDVGEGDLWYFPSGLPHSIQAL-EEGAEFLLVFDDG-SFSENSTFQLTDWLAHTPKEVI  173 (372)
T ss_dssp             -----------------CEEEEEEETTEEEEECTTCCEEEEEE-EEEEEEEEEESCT-TCCGGGEEEHHHHHHTSCHHHH
T ss_pred             -----------------cEEEEEeccCCEEEECCCCEEEEEeC-CCCcEEEEEECCC-CcccccceeeccccccCCHHHH
Confidence                             45556899999999999999999997 5678887655443 3444455556799999999999


Q ss_pred             HHHcCCCHHHHHHhhcCCCCceEEcC
Q 040805          501 ELAFNTRADEVERVFGNQDQDWFFKG  526 (540)
Q Consensus       501 a~AF~vs~e~v~kl~~~q~e~~f~~~  526 (540)
                      ++||+++.+++++|+..+  .+|+++
T Consensus       174 a~af~v~~~~~~~i~~~e--~~i~~~  197 (372)
T d1j58a_         174 AANFGVTKEEISNLPGKE--KYIFEN  197 (372)
T ss_dssp             HHHHTCCTGGGTTSCSSC--CSEECC
T ss_pred             HHhhCCCHHHHhhccccc--cccccc
Confidence            999999999999998754  566654

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.4e-19  Score=183.17  Aligned_cols=232  Identities=16%  Similarity=0.110  Sum_probs=145.6

Q ss_pred             ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      ..+.+++..|+||+...+|+|++++++||++|+|.+++++   .+.+.+++||+|++|+|+.|.+.|+| ++++.++.++
T Consensus        52 ~~l~~~~~~l~PG~~~~~H~H~~~e~~~vl~G~g~~t~~~---~~~~~~~~Gd~~~~P~~~~H~~~n~g-~e~~~~l~~~  127 (308)
T d2d40a1          52 ATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVD---GERTPMNEGDFILTPQWRWHDHGNPG-DEPVIWLDGL  127 (308)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESSCEEEEEEECSSCEEEET---TEEEECCTTCEEEECTTSCEEEECCS-SSCEEEEEEE
T ss_pred             ccceeeeEEECCCCccccccCchhheEEEEEeeEEEEEec---CEEEEecCCCEEEeCCCceEEeEECC-CCCEEEEEEe
Confidence            4567888999999999999999999999999999888764   35789999999999999999999998 6799999887


Q ss_pred             ecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCC
Q 040805          257 KSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAG  336 (540)
Q Consensus       257 ~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~  336 (540)
                      +...    .  .+|-     ..++..++.+.....+.... .+.. +.    +..+...... ..-++.    ..+++..
T Consensus       128 d~pl----~--~~l~-----~~f~~~~~~~~~~~~~~~~~-~~~~-~~----~~~~~~~~~~-~~~~~~----~~~~~~~  185 (308)
T d2d40a1         128 DLPL----V--NILG-----CGFAEDYPEEQQPVTRKEGD-YLPR-YA----ANMLPLRHQT-GNSSPI----FNYRYDR  185 (308)
T ss_dssp             CHHH----H--HHHT-----CCCEEECC--CCCCCSCTTT-HHHH-HS----SSEECSSCCC-CSSCSC----CEECHHH
T ss_pred             ccch----h--hhcC-----eeeeccCcccccccccCccc-hhhh-cc----cccccccccc-cccCcc----cccchhh
Confidence            4221    1  1110     02233334443333332221 1111 11    1111111000 000000    0000000


Q ss_pred             -CCCceeEcCCCCCcccCCCceEEEecCCCC-CCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCC
Q 040805          337 -ESRGTFNLFGKRPSHSNNFGELFEADSNDF-RPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPH  414 (540)
Q Consensus       337 -~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~-p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~  414 (540)
                       ......-+....+. ...++.+..+++.+. +.+.  .|.+....|.||++..+|+| ++.+|.||++|+|++.|   +
T Consensus       186 ~~~~L~~~~~~~~~~-~~~g~~v~~~~~~~~~~~~~--t~~~~~~~l~pG~~~~~h~h-~~~~~~~v~~G~g~~~v---~  258 (308)
T d2d40a1         186 SREVLHDLTRLGDAD-EWDGYKMRYVNPVTGGYPMP--SMGAFLQLLPKGFASRVART-TDSTIYHVVEGSGQVII---G  258 (308)
T ss_dssp             HHHHHHHHHTTSCCB-TTTBEEEEECCTTTSSCSSS--SCEEEEEEECTTCBCCCBEE-SSCEEEEEEEEEEEEEE---T
T ss_pred             HHHHHHHHHhccCCC-CCCceEEEeeccccccCccc--eeEEEEEEccCCCccCCccC-ChheEEEEEeCcEEEEE---C
Confidence             00001111122221 123556666666544 4444  47788889999999999999 56799999999999887   2


Q ss_pred             CCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCC
Q 040805          415 VSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQN  465 (540)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~  465 (540)
                      +                      +.+  .+++||||+||+++.|...|+++
T Consensus       259 ~----------------------~~~--~~~~GD~~~vP~~~~h~~~~~~d  285 (308)
T d2d40a1         259 N----------------------ETF--SFSAKDIFVVPTWHGVSFQTTQD  285 (308)
T ss_dssp             T----------------------EEE--EEETTCEEEECTTCCEEEEEEEE
T ss_pred             C----------------------EEE--EEeCCCEEEeCCCCeEEEEcCCC
Confidence            2                      333  68999999999999999988754

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=99.78  E-value=2.1e-18  Score=177.74  Aligned_cols=243  Identities=12%  Similarity=0.095  Sum_probs=155.7

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      .+-.++..|.||....+|+|++.++.||++|+|..++|+   .+.+.+++||+|++|+|+.|...|.+++++++++.+.|
T Consensus        84 ~l~~~~q~l~PGe~~~~HrH~~~~~~~vi~G~g~~t~v~---ge~~~~~~GD~~~~P~~~~H~h~n~~~~~~~~~l~~~D  160 (355)
T d3bu7a1          84 WLFSGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVD---GHKVELGANDFVLTPNGTWHEHGILESGTECIWQDGLD  160 (355)
T ss_dssp             TBEEEEEEECTTCBCCCEEESSCEEEEEEECSCEEEEET---TEEEEECTTCEEEECTTCCEEEEECTTCCCEEEEEEEC
T ss_pred             hhhhheEeeCCCCcCcccccccceeEEEEECCcEEEEEC---CEEEEeeCCCEEEeCCCceEeeecCCCCCcEEEEEecc
Confidence            366778899999999999999999999999999888774   34588999999999999999999986566787776553


Q ss_pred             cCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCCC
Q 040805          258 SINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGE  337 (540)
Q Consensus       258 ~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~  337 (540)
                      .     .+..++.+      +++...+.++....+..+....+...     ..+..+....-..-+|.    -.|++...
T Consensus       161 ~-----Pl~~~l~~------~f~e~~p~~~~~~~~~~~~s~~~~~~-----~~~~p~~~~~~~~~sp~----~~ypw~~~  220 (355)
T d3bu7a1         161 I-----PLTNCLEA------NFYEVHPNDYQTTDIPLNDSPLTYGG-----PALLPQLDKWDKPYSPL----LKYSWEPT  220 (355)
T ss_dssp             H-----HHHHHTTC------CCEEECTTSSCCCCCCTTHHHHHHCS-----TTEEESSCCCCCSSCSC----CEECHHHH
T ss_pred             h-----HHHhhccc------eecccCchhcccccCCCccchhhhcc-----cccccccccCCcccCcc----cccccccc
Confidence            1     12222221      44445555555555555444433211     11222111000000000    00010000


Q ss_pred             CCceeEcCCCCCcccCCCceEEEecCCC-CCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCC
Q 040805          338 SRGTFNLFGKRPSHSNNFGELFEADSND-FRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVS  416 (540)
Q Consensus       338 ~~~~fnL~~~~P~~~n~~G~~~~~~~~~-~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~  416 (540)
                      ......+....+.....++.+..+++.+ .+.+..  |++....|.||....||+|+ +.+|.||++|+|++.|   ++ 
T Consensus       221 ~~al~~~~~~~~~~~~~g~~l~y~nP~tg~~~~~t--i~~~~~~l~pG~~~~~hrH~-~~~v~~v~~G~g~~~i---~g-  293 (355)
T d3bu7a1         221 YEALLNYAKASDGSPYDGLILRYTNPQTGGHPMLT--MGASMQMLRPGEHTKAHRHT-GNVIYNVAKGQGYSIV---GG-  293 (355)
T ss_dssp             HHHHHHHHTTCCCBTTTBEEEEECCTTTSSCSSSS--CEEEEEEECTTCBCCCEEES-SCEEEEEEECCEEEEE---TT-
T ss_pred             hHHHHHHHhcCCCCCCCceEEEeccccccCCCcce--eeEEEEEECCCCccCCcCcc-CcEEEEEEECcEEEEE---CC-
Confidence            0001112222222323455777777654 355554  77888899999999999996 5589999999999987   22 


Q ss_pred             CCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCC-EEEEEE
Q 040805          417 RSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNN-LEVVCF  473 (540)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~-l~~v~F  473 (540)
                                           +++  .+++||||+||++..|...|.+++. ..++.|
T Consensus       294 ---------------------~~~--~~~~GDv~~vP~~~~h~~~N~s~~e~~~Lf~~  328 (355)
T d3bu7a1         294 ---------------------KRF--DWSEHDIFCVPAWTWHEHCNTQERDDACLFSF  328 (355)
T ss_dssp             ---------------------EEE--EECTTCEEEECTTCCEEEEECCSSCCEEEEEE
T ss_pred             ---------------------EEE--EeeCCCEEEeCCCCcEEeecCCCCCcEEEEEe
Confidence                                 344  7999999999999999999877654 444455

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=99.78  E-value=3.8e-18  Score=173.72  Aligned_cols=245  Identities=12%  Similarity=0.070  Sum_probs=144.9

Q ss_pred             cceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          178 KYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      .+.+..+++.||+...||+| +++|++||++|++.+.+    +.+++.|++||++++|+|++|.+.|.++  +..++.++
T Consensus        41 ~~~~~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~----~~~~~~l~~Gd~~~~p~~~~H~~~n~~~--~~~~l~~~  114 (330)
T d1y3ta1          41 LFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL----DGERYLLISGDYANIPAGTPHSYRMQSH--RTRLVSYT  114 (330)
T ss_dssp             SEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE----TTEEEEECTTCEEEECTTCCEEEEECST--TEEEEEEE
T ss_pred             cEEEEEEEECCCCcCCcccCCCceEEEEEeCCEEEEEE----CCEEEEEcCCCEEEeCCCCeEEEEEcCC--CeEEEEEE
Confidence            35566669999999889877 58899999999999886    4568999999999999999999999974  46666666


Q ss_pred             ecCCCCCcccccccCCCCCc--ccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCC
Q 040805          257 KSINLPGQYEAFYGAGGENP--ESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPF  334 (540)
Q Consensus       257 ~~~~~pg~~~~f~LaG~~~~--~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~  334 (540)
                      .+..    +..||.+.+...  ..+....+.       ++....+.   .......+. ...+.. .+ +....... ..
T Consensus       115 ~p~~----~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---~~~~~~~~~-~~~~~~-~~-~~~~~~~~-~~  176 (330)
T d1y3ta1         115 MKGN----VAHLYSVIGNPYDHAEHPPYASE-------EVSNERFA---EAAAVATIV-FLDEAK-PA-CSAKLAEL-TE  176 (330)
T ss_dssp             ETTS----STHHHHHHSEECSCSSCCSSCCC-------CCTTCTTG---GGTSSCEEC-CCCCCC-SS-CSCEECCB-CS
T ss_pred             CCcc----HHHhhhhhceecccccCCccccc-------cccccccc---ccccccccc-cccccc-cc-cccccccc-cc
Confidence            5443    333332221100  000000000       01110011   111111111 100000 00 00000000 00


Q ss_pred             CCCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCC
Q 040805          335 AGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPH  414 (540)
Q Consensus       335 ~~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~  414 (540)
                      ......++.+.......-...|..+.......+..  -.+++..+++.||+...||||+...++.||++|++.+.+   +
T Consensus       177 ~p~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~t~--~~~~~~~~~~~~G~~~~~H~H~~~~e~~~vl~G~~~~~v---~  251 (330)
T d1y3ta1         177 LPDGAVPYVLESGEGDRLLTGDQLHRIVAAQKNTD--GQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT---D  251 (330)
T ss_dssp             CCSSSCCEEECTTCSEEEEETTEEEEEEECGGGTT--TSCEEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEE---T
T ss_pred             CCccceeeEEEcccCceEecCCceEEEcCCCcccC--CcEEEEEEEECCCCccCccCcCCccEEEEEEecEEEEEE---C
Confidence            01111234444333322122343333322222222  248888999999999999999999999999999999965   2


Q ss_pred             CCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEec
Q 040805          415 VSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEIN  476 (540)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~  476 (540)
                      +                      +.  ..|++||+++||+|.+|.+.|.+ +++.++.+.+.
T Consensus       252 ~----------------------~~--~~~~~Gd~~~vP~g~~H~~~~~~-~~~~~l~~~~p  288 (330)
T d1y3ta1         252 G----------------------QE--IQLNPGDFLHVPANTVHSYRLDS-HYTKMVGVLVP  288 (330)
T ss_dssp             T----------------------EE--EEECTTCEEEECTTCCEEEEECS-SSEEEEEEEES
T ss_pred             C----------------------EE--EEeCCCCEEEECcCCcEEeEeCC-CCeEEEEEECC
Confidence            2                      23  36999999999999999998875 57888776444

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=99.75  E-value=8.4e-18  Score=173.05  Aligned_cols=242  Identities=15%  Similarity=0.183  Sum_probs=147.0

Q ss_pred             ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      ..+-.++..|.||....||+|+++++.||++|+|.+++|+   .+.+.+++||+|++|+|+.|+..|.+ ++++.++.++
T Consensus        85 ~~l~~~~~~l~PGe~~~~H~H~~~~~~~vi~G~g~~t~v~---g~~~~~~~GD~~~~P~~~~H~~~n~~-d~~~~~l~~~  160 (351)
T d2phda1          85 PTMWAGIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVN---GDPVRMSRGDLLLTPGWCFHGHMNDT-DQPMAWIDGL  160 (351)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESSCEEEEEEECEEEEEEET---TEEEEEETTCEEEECTTCCEEEEECS-SSCEEEEEEE
T ss_pred             chhhhheEEECCCCcCCccccccceeEEEEECCcEEEEEC---CEEEEEeCCCEEEeCCCceEEEEEcC-CCCEEEEEee
Confidence            4566788899999999999999999999999999888774   35689999999999999999999997 5689898887


Q ss_pred             ecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCC
Q 040805          257 KSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAG  336 (540)
Q Consensus       257 ~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~  336 (540)
                      |..-.-.....|+-.+..           . +......+....++....   .-+..+..-.....+|.    ..++...
T Consensus       161 d~pl~~~l~~~f~e~~~~-----------~-~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~sp~----~~yp~~~  221 (351)
T d2phda1         161 DIPFSQQMDVGFFEFGSD-----------R-VTDYATPNFSRGERLWCH---PGLRPLSGLQNTVASPI----GAYRWEF  221 (351)
T ss_dssp             CHHHHHHTTCCCEEECCC--------------CCCCCCSSCHHHHHHCS---TTEEEGGGCSCCSSCSC----SEECHHH
T ss_pred             cCchhhhccccccccccc-----------c-cccccCCccchhhhhccc---cccCcccccccccCCCc----ccCchHH
Confidence            532100000011111110           0 000111122222222211   11222211000000000    0000000


Q ss_pred             CC--CceeEcC--CCCC-cccCCCceEEEecCCC-CCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEE
Q 040805          337 ES--RGTFNLF--GKRP-SHSNNFGELFEADSND-FRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEI  410 (540)
Q Consensus       337 ~~--~~~fnL~--~~~P-~~~n~~G~~~~~~~~~-~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~v  410 (540)
                      ..  ...+...  ...+ .....++.+..+++.+ .+.+..  |++....|.||.+..||+| .+.+|.||++|+|++.|
T Consensus       222 ~~~al~~~~~~~~~~~~~~~~~g~~~l~yvnp~tg~~~~~t--~~~~~~~l~pG~~~~~hrh-~~~~v~~vi~G~g~~~i  298 (351)
T d2phda1         222 TDRALTEQLLLEDEGQPATVAPGHAAIRYVNPTTGGDVMPT--LRCEFHRLRAGTETATRNE-VGSTVFQVFEGAGAVVM  298 (351)
T ss_dssp             HHHHHHHHHHHHHTTCSCSSBTTEEEEEEBCTTTSSBSBTT--BEEEEEEECTTCBCCCEEE-SSCEEEEEEESCEEEEE
T ss_pred             HHhhhhhhhhcccccccccccCcceeEEEeccccCCCcCCc--ceEEEEEecCCCcCCCccc-cCcEEEEEEeCcEEEEE
Confidence            00  0000000  1111 2222344677777655 566664  7777788999999999999 46799999999999987


Q ss_pred             EcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805          411 ACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       411 v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F  473 (540)
                         ++                      +++  .+++||||+||++++|...|++  +..++.|
T Consensus       299 ---~~----------------------~~~--~~~~gDvf~vP~~~~h~~~n~~--~~~Lf~~  332 (351)
T d2phda1         299 ---NG----------------------ETT--KLEKGDMFVVPSWVPWSLQAET--QFDLFRF  332 (351)
T ss_dssp             ---TT----------------------EEE--EECTTCEEEECTTCCEEEEESS--CEEEEEE
T ss_pred             ---CC----------------------EEE--EEcCCCEEEeCCCCcEEEecCC--CeEEEEE
Confidence               22                      344  7999999999999999999864  4445555

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.74  E-value=1e-16  Score=157.31  Aligned_cols=193  Identities=15%  Similarity=0.097  Sum_probs=129.7

Q ss_pred             ceeeeeeeCCCccc-ccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          179 YRLGILIANPQTFV-TPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       179 ~rl~~~~l~Pggl~-~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      +.+-+++|.||+-. .|+|+ ..++++||++|++.+.+    +.+++.|++||.+++|+|.+|.+.|.+ +++++++.+-
T Consensus        48 f~~~~v~l~pg~~~~~~~~~~~~Ee~~yVl~G~~~~~~----~~~~~~l~~Gd~~~~p~~~~H~~~N~~-~~~~~~l~v~  122 (250)
T d1sefa_          48 FVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSD----GQETHELEAGGYAYFTPEMKMYLANAQ-EADTEVFLYK  122 (250)
T ss_dssp             SEEEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEEC----SSCEEEEETTEEEEECTTSCCEEEESS-SSCEEEEEEE
T ss_pred             EEEEEEEEcCCcccCCCCCCCCcEEEEEEEeeEEEEEE----CCEEEEEcCCCEEEEcCCCcEEEEECC-CCCEEEEEEE
Confidence            34445699999865 44444 56789999999998887    556899999999999999999999998 5689998764


Q ss_pred             ecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCC
Q 040805          257 KSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAG  336 (540)
Q Consensus       257 ~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~  336 (540)
                      ......        .+.. +                                ..+.. +..++...              
T Consensus       123 ~~y~~~--------~~~~-p--------------------------------~~~~~-~~~~~e~~--------------  146 (250)
T d1sefa_         123 KRYQPL--------AGHQ-P--------------------------------YKVVG-SIHDQQPE--------------  146 (250)
T ss_dssp             EECCCC--------TTCC-C--------------------------------CCEEE-EGGGSCCE--------------
T ss_pred             Eecccc--------cccc-c--------------------------------ccccc-cccccccc--------------
Confidence            322110        0000 0                                00000 00000000              


Q ss_pred             CCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCC
Q 040805          337 ESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVS  416 (540)
Q Consensus       337 ~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~  416 (540)
                            .+.      .....+...+.    |.-...++.+..+.|.||+....|+|....+++||++|+|.+.+   ++ 
T Consensus       147 ------~~~------~~~~~~~~~~~----p~~~~~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~~~~~~---~~-  206 (250)
T d1sefa_         147 ------EYE------GMTDVLLWSLL----PKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL---DN-  206 (250)
T ss_dssp             ------EGG------GCTTEEEEECS----CSSTTCSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE---TT-
T ss_pred             ------ccC------CccccceEEec----CccccccEEEEEEEECCCCccCccCccCceEEEEEeCCEEEEEE---CC-
Confidence                  000      00111222222    21122368899999999999976666788899999999999886   22 


Q ss_pred             CCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecC-CCCEEEEEEEe
Q 040805          417 RSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQ-NNNLEVVCFEI  475 (540)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~-~e~l~~v~F~~  475 (540)
                                           +.  ..|++||+++||++.||++.|.| ++++.++.+..
T Consensus       207 ---------------------~~--~~~~~GD~i~~~~~~pH~~~n~G~~~~~~~l~~k~  243 (250)
T d1sefa_         207 ---------------------EW--YPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSKD  243 (250)
T ss_dssp             ---------------------EE--EEEETTCEEEECTTCCEEEEEECSSSCEEEEEEEE
T ss_pred             ---------------------EE--EEecCCCEEEECCCCCEEeEcCCCCCcEEEEEEec
Confidence                                 23  47999999999999999999987 57788877643

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.74  E-value=1.5e-16  Score=158.28  Aligned_cols=204  Identities=17%  Similarity=0.179  Sum_probs=137.7

Q ss_pred             cccccccccceeeeeeeCCCcc-ccccc-cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCC
Q 040805          170 SKLLRGLEKYRLGILIANPQTF-VTPTH-LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDD  247 (540)
Q Consensus       170 ~~~L~Gi~~~rl~~~~l~Pggl-~~Ph~-~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~  247 (540)
                      +|++-+...+..-+++++|||- ..|+| +++++++||++|++++.+    +.+++.|++||.++||+|+.|.+.|.+ +
T Consensus        57 ~p~~G~a~~F~~y~vev~PGg~s~~p~~~~~~Ee~~yVl~G~~~l~~----~g~~~~L~~Gd~~y~P~g~~h~~~N~g-~  131 (273)
T d1sq4a_          57 RPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTL----QGQVHAMQPGGYAFIPPGADYKVRNTT-G  131 (273)
T ss_dssp             CCSSSSCCSCEEEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEE----SSCEEEECTTEEEEECTTCCEEEECCS-S
T ss_pred             CcccCCCcceEEEEEEECCCCccCCCCCCCCcEEEEEEEeCEEEEEE----CCEEEEecCCCEEEECCCCcEeeeecC-C
Confidence            3555444556666779999974 46665 468999999999999987    456889999999999999999999998 5


Q ss_pred             ccEEEEEEeecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCC
Q 040805          248 EKLYIVKFIKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQE  327 (540)
Q Consensus       248 e~l~~v~i~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~  327 (540)
                      ++++++.|-......        .|...+                                ..++.-. .+   +.+.  
T Consensus       132 ~~a~~l~i~k~y~~~--------~g~~~p--------------------------------~~~v~~~-~d---v~p~--  165 (273)
T d1sq4a_         132 QHTRFHWIRKHYQKV--------DGVPLP--------------------------------EAFVTNE-QD---IQPL--  165 (273)
T ss_dssp             SCEEEEEEEEECCCC--------TTCCCC--------------------------------CCEEEEG-GG---SCCE--
T ss_pred             CCEEEEEEEeccccc--------cccccc--------------------------------cccccCh-hc---cCcc--
Confidence            789988775433211        110000                                0122111 11   1110  


Q ss_pred             CCCcCCCCCCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcc-cccccCCCcEEEEEEeceE
Q 040805          328 GPSIWPFAGESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMA-APFYNSRSTKVAVVVAGDG  406 (540)
Q Consensus       328 ~~s~~~~~~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~-~PH~h~~A~ei~yV~~G~g  406 (540)
                           +..+..              ........+++.+.    ..++.+..+++.||+-. .+|+|+ ..+++||++|+|
T Consensus       166 -----~~~~~~--------------~~~~~~r~~~p~d~----~~d~~~~i~~~~PG~~~~~~h~H~-~ee~~~vl~G~~  221 (273)
T d1sq4a_         166 -----VMPDTE--------------GRWSTTRFVDMSDM----RHDMHVNIVNFEPGGVIPFAETHV-MEHGLYVLEGKA  221 (273)
T ss_dssp             -----ECSSGG--------------GCEEEECSSCTTCT----TCSEEEEEEEECSSSEESCCCCCS-EEEEEEEEECEE
T ss_pred             -----cccCCC--------------ceeEEEEeeCCccc----ccceEEEEEEEccCCccccccccc-cceEEEEEccEE
Confidence                 000000              00001111222221    12688999999999855 589996 568999999999


Q ss_pred             EEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEe
Q 040805          407 YIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEI  475 (540)
Q Consensus       407 ~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~  475 (540)
                      ++.+   ++                      +.  ..|++||+++||++.+|++.|.+++++.++.+.+
T Consensus       222 ~~~~---~~----------------------~~--~~v~~GD~i~~~~~~ph~~~n~g~~p~~yl~~kd  263 (273)
T d1sq4a_         222 VYRL---NQ----------------------DW--VEVEAGDFMWLRAFCPQACYSGGPGRFRYLLYKD  263 (273)
T ss_dssp             EEEE---TT----------------------EE--EEEETTCEEEEEESCCEEEECCSSSCEEEEEEEE
T ss_pred             EEEE---CC----------------------EE--EEecCCCEEEECCCCCEEeEeCCCCCEEEEEEEE
Confidence            9976   22                      22  4799999999999999999999999999988743

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.70  E-value=7.1e-16  Score=150.94  Aligned_cols=193  Identities=13%  Similarity=0.117  Sum_probs=134.2

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      .+...++++.||+-  ++.+..++++||++|++++.+    +..++.|++||.+++|+|+.|.+.|++ +.+++++... 
T Consensus        49 ~F~~~~v~~~pGg~--~~~~~~E~~~~Vl~G~~~~~~----~g~~~~l~~G~~~~~P~g~~h~~~n~~-~~~~~~~~~~-  120 (245)
T d1sfna_          49 RFVQFTAEMPAGAQ--ATESVYQRFAFVLSGEVDVAV----GGETRTLREYDYVYLPAGEKHMLTAKT-DARVSVFEKP-  120 (245)
T ss_dssp             SSEEEEEEECTTCE--EECCSSEEEEEEEEEEEEEEC----SSCEEEECTTEEEEECTTCCCEEEEEE-EEEEEEEEEC-
T ss_pred             ceEEEEEEECCCCC--CCCCCccEEEEEEECEEEEEE----CCEEEEecCCCEEEeCCCCcEEEEeCC-CccEEEEEee-
Confidence            45555679999985  344567899999999998886    456899999999999999999999987 4577766322 


Q ss_pred             cCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCCCC
Q 040805          258 SINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFAGE  337 (540)
Q Consensus       258 ~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~~~  337 (540)
                       .. +       +.+...                                ...++ .+..++.   +             
T Consensus       121 -~~-~-------~~~~~~--------------------------------P~~~~-~~~~~~~---~-------------  142 (245)
T d1sfna_         121 -YQ-T-------VEGVQA--------------------------------PGVYW-GNERENP---G-------------  142 (245)
T ss_dssp             -CC-C-------BTTBCC--------------------------------CCCEE-EETTTCC---C-------------
T ss_pred             -cc-c-------ccccCC--------------------------------Cccee-ccccccc---c-------------
Confidence             10 0       000000                                00111 1111110   0             


Q ss_pred             CCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCC
Q 040805          338 SRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSR  417 (540)
Q Consensus       338 ~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~  417 (540)
                          +      |....+.+.+..+++.+    ..-++.+..++|.||+-+.+|.|....+++||++|+|.+.+   ++  
T Consensus       143 ----~------p~~~~~~~~~r~l~p~~----~~~~~~~~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~~i---~~--  203 (245)
T d1sfna_         143 ----Y------PFEGDDHLIARKLLPDE----PAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EE--  203 (245)
T ss_dssp             ----E------ETTSCTTEEEEECSCCC----TTCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TT--
T ss_pred             ----c------CCccccceEEEecCCcc----cccceEEEEEEEccCceeeceecCCceEEEEEeCCEEEEEE---CC--
Confidence                0      01112344455554332    22368889999999999998876788899999999999876   22  


Q ss_pred             CcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEecC
Q 040805          418 SSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEINA  477 (540)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a  477 (540)
                                          +.  ..|++||++++|++.+|++.|.+++++.++.+.+-+
T Consensus       204 --------------------~~--~~v~~GD~i~~~~~~~H~~~n~g~~~~~~l~~k~~~  241 (245)
T d1sfna_         204 --------------------NY--YPVTAGDIIWMGAHCPQWYGALGRNWSKYLLYKDMN  241 (245)
T ss_dssp             --------------------EE--EEEETTCEEEECTTCCEEEEEESSSCEEEEEEEECS
T ss_pred             --------------------EE--EEecCCCEEEECCCCCEeeEeCCCCCEEEEEEecCC
Confidence                                22  478999999999999999999999999999885443

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=1.9e-15  Score=148.34  Aligned_cols=191  Identities=10%  Similarity=0.108  Sum_probs=123.8

Q ss_pred             cceeeeeeeCCCcccc-ccc-cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805          178 KYRLGILIANPQTFVT-PTH-LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~-Ph~-~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i  255 (540)
                      .+.+-+++|.||+-.. |+| ++.++++||++|++.+.+    +..++.|++||++++|+|..|.+.|.+ +++++++.+
T Consensus        50 ~f~~~~v~l~pG~~~~~~~h~~~~Ee~~~Vl~G~~~~~~----~~~~~~l~~Gd~~~~p~~~~H~~~N~~-~~~~~~l~v  124 (253)
T d1rc6a_          50 SFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA----EGKTFALSEGGYLYCPPGSLMTFVNAQ-AEDSQIFLY  124 (253)
T ss_dssp             SSEEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE----TTEEEEEETTEEEEECTTCCCEEEECS-SSCEEEEEE
T ss_pred             ceEEEEEEECCCcccCCcccCCCcEEEEEEEECEEEEEE----CCEEEEECCCCEEEECCCCCEEEEECC-CCCEEEEEE
Confidence            3344455999997653 444 357789999999999887    456899999999999999999999998 568998877


Q ss_pred             eecCCCCCcccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHHhccCCCCcEEEccchhhhccCCCCCCCCcCCCC
Q 040805          256 IKSINLPGQYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERVLFQQDQGAMVKASKQQIRALSRSQEGPSIWPFA  335 (540)
Q Consensus       256 ~~~~~~pg~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l~~~q~~g~Iv~~~~e~l~~l~~~~~~~s~~~~~  335 (540)
                      ..+.........                                         ..+. .+..+   +.+.          
T Consensus       125 ~~~~~~~~~~~~-----------------------------------------~~~~-~~~~d---~~~~----------  149 (253)
T d1rc6a_         125 KRRYVPVEGYAP-----------------------------------------WLVS-GNASE---LERI----------  149 (253)
T ss_dssp             EEECCCCTTCCC-----------------------------------------CCEE-EEGGG---SCCC----------
T ss_pred             EeccccCCCccc-----------------------------------------eeec-ccccc---cccc----------
Confidence            543332110000                                         0000 00000   0000          


Q ss_pred             CCCCceeEcCCCCCcccCCCceEEEecCCCCCCCccccceEEEEEEcCCCccc-ccccCCCcEEEEEEeceEEEEEEcCC
Q 040805          336 GESRGTFNLFGKRPSHSNNFGELFEADSNDFRPLEDLDITVSYANISKGAMAA-PFYNSRSTKVAVVVAGDGYIEIACPH  414 (540)
Q Consensus       336 ~~~~~~fnL~~~~P~~~n~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~-PH~h~~A~ei~yV~~G~g~v~vv~p~  414 (540)
                                   |.-......+..+.+.+.    ..++.+..+++.||+-.. +|+| ...+++||++|+|.+.+   +
T Consensus       150 -------------~~~~~~~~~~~~~~p~~~----~~~~~~~~~~~~PG~~~~~~h~h-~~ee~~~vl~G~g~~~i---~  208 (253)
T d1rc6a_         150 -------------HYEGMDDVILLDFLPKEL----GFDMNMHILSFAPGASHGYIETH-VQEHGAYILSGQGVYNL---D  208 (253)
T ss_dssp             --------------------CEEEECSCCST----TCSEEEEEEEECTTCCBEEEEEE-SSCEEEEEEESEEEEES---S
T ss_pred             -------------cccccceeEEEEecCccc----cccEEEEEEEECCCceEeEEEeC-CceEEEEEeCCEEEEEE---C
Confidence                         000001112222322221    236889999999998775 6666 67899999999999875   2


Q ss_pred             CCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCC-CCEEEEEE
Q 040805          415 VSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQN-NNLEVVCF  473 (540)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~-e~l~~v~F  473 (540)
                      +                      +.  ..|++||+++||+|.||+..|.|. +.+.++..
T Consensus       209 ~----------------------~~--~~~~~GD~i~~~~~~ph~~~~~g~~~~~~~~~~  244 (253)
T d1rc6a_         209 N----------------------NW--IPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYS  244 (253)
T ss_dssp             S----------------------CE--EEEETTCEEEECSSEEEEEEEC----CEEEEEE
T ss_pred             C----------------------EE--EEecCCCEEEECCCCCEeeeeCCCCCcEEEEEE
Confidence            2                      22  378999999999999999999875 44566554

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.36  E-value=2e-12  Score=118.18  Aligned_cols=86  Identities=19%  Similarity=0.289  Sum_probs=73.8

Q ss_pred             cccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecC-----CceEEeeCCCcEEEECCCCeEEEEeCCC
Q 040805          172 LLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIREN-----NRESYNVKRGDIIRVPSGNTFYVTNTDD  246 (540)
Q Consensus       172 ~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~-----~~~~~~l~~GDv~~iPaG~~h~~~N~g~  246 (540)
                      .+.|...+.+.+.+|.||+...+|||++++++||++|++.+.+-...     ..+++.|++||+|+||+|++|++.|+|+
T Consensus        34 ~~~g~~~i~v~~~~l~PG~~~~~H~H~~~e~~~Vl~G~g~~~i~~~~~~~~~~~~~~~l~~Gd~~~iP~~~~H~~~N~g~  113 (160)
T d1lr5a_          34 LNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDE  113 (160)
T ss_dssp             HHHCCSSEEEEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCCS
T ss_pred             cCCCccEEEEEEEEECCCccccceeccccEEEEEEeeeEEEEECCccccccccceEEEecCCCEEEeCCCCcEEEEECCC
Confidence            34466777788889999999999999999999999999998774322     2367999999999999999999999987


Q ss_pred             CccEEEEEEee
Q 040805          247 DEKLYIVKFIK  257 (540)
Q Consensus       247 ~e~l~~v~i~~  257 (540)
                      +++|++++++.
T Consensus       114 ~E~l~~l~i~~  124 (160)
T d1lr5a_         114 HEDLQVLVIIS  124 (160)
T ss_dssp             SSCEEEEEEEE
T ss_pred             CCCEEEEEEEC
Confidence            78999998874

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.34  E-value=2.3e-12  Score=110.22  Aligned_cols=78  Identities=17%  Similarity=0.251  Sum_probs=68.1

Q ss_pred             ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      .++.+..+.+.||....+|+|+.++++||++|++.+.+   ++.+++.|++||++++|+|++|++.|.+ +++|.++++.
T Consensus        24 ~~~~v~~~~l~pG~~~p~H~H~~~e~~~Vl~G~~~~~v---~~~e~~~v~~Gd~i~ip~~~~H~~~n~~-~e~l~~l~v~   99 (108)
T d2b8ma1          24 EHVQINHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL---EDQEPHNYKEGNIVYVPFNVKMLIQNIN-SDILEFFVVK   99 (108)
T ss_dssp             SSCEEEEEEEETTCBCCCEECSSCEEEEEEESEEEEEE---TTSCCEEEETTCEEEECTTCEEEEECCS-SSEEEEEEEE
T ss_pred             CCEEEEEEEECCCCcChhhcccccEEEEEEeeeEEEEE---ecccEEEeecceEeeccCCceEEEEcCC-CCcEEEEEEE
Confidence            35667777999999999999999999999999999987   4456789999999999999999999998 5789999887


Q ss_pred             ec
Q 040805          257 KS  258 (540)
Q Consensus       257 ~~  258 (540)
                      .|
T Consensus       100 ~P  101 (108)
T d2b8ma1         100 AP  101 (108)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=99.23  E-value=2.4e-11  Score=104.57  Aligned_cols=71  Identities=20%  Similarity=0.346  Sum_probs=62.5

Q ss_pred             eeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          181 LGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       181 l~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      ++.++++||+-..+|+|. .++++||++|++.+.+    +...+.|++||++++|+|.+|++.|++ +++|++++|.
T Consensus        41 ~~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~~----~~~~~~l~~Gd~~~ip~g~~H~~~N~g-~~~~~~l~I~  112 (115)
T d1o4ta_          41 FARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD----NGKDVPIKAGDVCFTDSGESHSIENTG-NTDLEFLAVI  112 (115)
T ss_dssp             EEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE----TTEEEEEETTEEEEECTTCEEEEECCS-SSCEEEEEEE
T ss_pred             EEEEEECCCCCcCCEECCCCcEEEEEEECcceEEE----cCeeEEeeccEEEEECCCCeEEEEECC-CCCEEEEEEE
Confidence            456689999998888874 6899999999998876    456799999999999999999999998 5699999886

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=99.23  E-value=2.2e-11  Score=102.27  Aligned_cols=77  Identities=16%  Similarity=0.177  Sum_probs=66.5

Q ss_pred             ccceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805          177 EKYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i  255 (540)
                      .++.+.++.++||+...+|+| ++++++||++|++.+.+    +..++.|++||++++|+|+.|++.|.+ +++++++.+
T Consensus        26 ~~~~~~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~----~~~~~~l~~Gd~~~~p~~~~H~~~n~g-~~~~~~l~v  100 (105)
T d1v70a_          26 ERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV----GEEEALLAPGMAAFAPAGAPHGVRNES-ASPALLLVV  100 (105)
T ss_dssp             TTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE----TTEEEEECTTCEEEECTTSCEEEECCS-SSCEEEEEE
T ss_pred             CCEEEEEEEECCCCCCcceECCCCeEEEEEEeeEEEEEE----eeeEEEecceEEEEeCCCCEEEeEECC-CCCEEEEEE
Confidence            346677889999999888876 57899999999999887    456789999999999999999999998 578999988


Q ss_pred             eec
Q 040805          256 IKS  258 (540)
Q Consensus       256 ~~~  258 (540)
                      +.|
T Consensus       101 ~~P  103 (105)
T d1v70a_         101 TAP  103 (105)
T ss_dssp             EES
T ss_pred             ECC
Confidence            754

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=99.23  E-value=1.1e-11  Score=106.58  Aligned_cols=75  Identities=16%  Similarity=0.211  Sum_probs=66.9

Q ss_pred             ccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          177 EKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      .++.+.+++|+||+...+|+|+.++++||++|++.+.+    +...+.|++||++++|+|.+|++.|.+ ++++++|+++
T Consensus        34 ~~~~~~~~~i~pG~~~~~H~H~~~e~~~vl~G~~~~~~----~~~~~~l~~Gd~~~ip~~~~H~~~n~~-~~~~~~l~ii  108 (114)
T d1vj2a_          34 PNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK----EQGEETVEEGFYIFVEPNEIHGFRNDT-DSEVEFLCLI  108 (114)
T ss_dssp             SSEEEEEEEEEEEEEEEEECCSSCEEEEEEESEEEEEC----SSCEEEEETTEEEEECTTCCEEEECCS-SSCEEEEEEE
T ss_pred             CceEEEEEEECCCCCCCceECCCcEEEEEEEceeEEEE----eeeeeEEecCeEEEEcCCCeEEEEeCC-CCCEEEEEEE
Confidence            34567777999999999999999999999999998886    446899999999999999999999998 6799999998

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.12  E-value=1.2e-10  Score=97.53  Aligned_cols=74  Identities=11%  Similarity=0.066  Sum_probs=60.5

Q ss_pred             cceeeeeeeCCCccc--cccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805          178 KYRLGILIANPQTFV--TPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~--~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i  255 (540)
                      ++.+.+++|.||+-.  .||++.+.|++||++|++.+.+    +...+.|++||.+.||+|++|++.|.+ ++++.++.|
T Consensus        21 ~~e~~~~~l~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~----~~~~~~l~~GD~~~~~~~~~H~~~n~~-~~~~~~~vi   95 (99)
T d1y9qa2          21 GLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF----DEQWHELQQGEHIRFFSDQPHGYAAVT-EKAVFQNIV   95 (99)
T ss_dssp             TEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE----TTEEEEECTTCEEEEECSSSEEEEESS-SCEEEEEEE
T ss_pred             CEEEEEEEEeCCcEeccccccCCcEEEEEEEcCceEEEe----cceEEEecCCCEEEECCCCeEEEEeCC-ccCEEEEEE
Confidence            344555599999854  5667889999999999999988    556899999999999999999999998 456755544


Q ss_pred             e
Q 040805          256 I  256 (540)
Q Consensus       256 ~  256 (540)
                      .
T Consensus        96 ~   96 (99)
T d1y9qa2          96 A   96 (99)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=99.12  E-value=2.6e-10  Score=97.91  Aligned_cols=78  Identities=10%  Similarity=0.190  Sum_probs=66.5

Q ss_pred             CccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCc
Q 040805          369 LEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDS  448 (540)
Q Consensus       369 L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD  448 (540)
                      +......+..++|.||+-..+|||++..++.||++|++.+.+   ++                      +.  ..|++||
T Consensus        34 ~~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~~---~~----------------------~~--~~l~~Gd   86 (115)
T d1o4ta_          34 MHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD---NG----------------------KD--VPIKAGD   86 (115)
T ss_dssp             TTTSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE---TT----------------------EE--EEEETTE
T ss_pred             cCCccEEEEEEEECCCCCcCCEECCCCcEEEEEEECcceEEE---cC----------------------ee--EEeeccE
Confidence            344446677899999999999999999999999999998874   12                      22  3799999


Q ss_pred             EEEECCCCeEEEEecCCCCEEEEEE
Q 040805          449 AYIVPAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       449 V~vVPaG~~h~~~n~~~e~l~~v~F  473 (540)
                      +++||+|.+|++.|.++++++|++.
T Consensus        87 ~~~ip~g~~H~~~N~g~~~~~~l~I  111 (115)
T d1o4ta_          87 VCFTDSGESHSIENTGNTDLEFLAV  111 (115)
T ss_dssp             EEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             EEEECCCCeEEEEECCCCCEEEEEE
Confidence            9999999999999999999998875

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=99.05  E-value=4e-10  Score=99.88  Aligned_cols=78  Identities=15%  Similarity=0.275  Sum_probs=68.2

Q ss_pred             ccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEE
Q 040805          175 GLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK  254 (540)
Q Consensus       175 Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~  254 (540)
                      +..++.++.+++.||+-..+|+|...+++||++|++++.+   .+.....+++||+++||+|+.||.-|++ ++++..|+
T Consensus        31 ~~~~~~~~~vtf~PG~~~~~H~H~~~q~~~Vl~G~~~~~~---~g~~~~~~~~Gd~v~ippg~~H~~~a~~-~~~~~~la  106 (134)
T d2f4pa1          31 GVFNTQVYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQE---RGKPARILKKGDVVEIPPNVVHWHGAAP-DEELVHIG  106 (134)
T ss_dssp             CSSSCEEEEEEECTTCEECSEECTTCEEEEEEEEEEEEEE---TTSCCEEEETTCEEEECTTCCEEEEEBT-TBCEEEEE
T ss_pred             CCceeEEEEEEECCCCcCccccCCCCEEEEEEeCEEEEEE---CCcceEEEcCCCeEEECCCCceECccCC-CCcEEEEE
Confidence            4456778888999999999999999999999999998876   3445679999999999999999999987 67899998


Q ss_pred             Ee
Q 040805          255 FI  256 (540)
Q Consensus       255 i~  256 (540)
                      |.
T Consensus       107 i~  108 (134)
T d2f4pa1         107 IS  108 (134)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.02  E-value=9e-10  Score=103.08  Aligned_cols=81  Identities=14%  Similarity=0.221  Sum_probs=67.2

Q ss_pred             ccceeeeeeeCCCccc------ccccc---CCCeEEEEEeeEEEEEEEecC-CceEEeeCCCcEEEECCCCeEEEEeCCC
Q 040805          177 EKYRLGILIANPQTFV------TPTHL---DADAVFFVSWGQGTITVIREN-NRESYNVKRGDIIRVPSGNTFYVTNTDD  246 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~------~Ph~~---~A~ei~yV~~G~g~ig~V~~~-~~~~~~l~~GDv~~iPaG~~h~~~N~g~  246 (540)
                      ..+.+.+..|.||.+.      -.|||   +.+|++||++|+|++.+-+++ ...++.+++||+++||+|+.|.+.|+| 
T Consensus        65 ~~l~~~~~~i~PG~~~~e~~~t~gH~H~h~~~~E~~~vl~G~g~~~l~~~~~~~~~~~v~~Gd~v~iP~g~~H~~~N~G-  143 (190)
T d1x82a_          65 GDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIG-  143 (190)
T ss_dssp             TCEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECS-
T ss_pred             CCeEEEEEEECCCcccCccccccceECCCCCCeEEEEEEEeEEEEEEeeccCceEEEEecCCcEEEEecceeEEeEECC-
Confidence            4567778899999743      34665   467999999999999987765 345789999999999999999999998 


Q ss_pred             CccEEEEEEeec
Q 040805          247 DEKLYIVKFIKS  258 (540)
Q Consensus       247 ~e~l~~v~i~~~  258 (540)
                      +++|++++++.+
T Consensus       144 de~L~~l~v~~~  155 (190)
T d1x82a_         144 DEPFIFLAIYPA  155 (190)
T ss_dssp             SSCEEEEEEEET
T ss_pred             CCCEEEEEEECC
Confidence            679999999843

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=99.01  E-value=8.7e-10  Score=92.20  Aligned_cols=76  Identities=13%  Similarity=0.149  Sum_probs=66.8

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      ++.+..+.+.||+-..+|+|+.+.++.||++|++.+.+   ++                      +.  ..|++||++++
T Consensus        27 ~~~~~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~---~~----------------------~~--~~l~~Gd~~~~   79 (105)
T d1v70a_          27 RMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GE----------------------EE--ALLAPGMAAFA   79 (105)
T ss_dssp             TEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TT----------------------EE--EEECTTCEEEE
T ss_pred             CEEEEEEEECCCCCCcceECCCCeEEEEEEeeEEEEEE---ee----------------------eE--EEecceEEEEe
Confidence            57888999999999999999999999999999999875   22                      22  36999999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEEEe
Q 040805          453 PAGHPVVTVASQNNNLEVVCFEI  475 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F~~  475 (540)
                      |+|.+|.+.|.+++++.++.+..
T Consensus        80 p~~~~H~~~n~g~~~~~~l~v~~  102 (105)
T d1v70a_          80 PAGAPHGVRNESASPALLLVVTA  102 (105)
T ss_dssp             CTTSCEEEECCSSSCEEEEEEEE
T ss_pred             CCCCEEEeEECCCCCEEEEEEEC
Confidence            99999999999999999987643

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.00  E-value=9.8e-10  Score=93.47  Aligned_cols=75  Identities=11%  Similarity=0.218  Sum_probs=65.6

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      ++.+..+.|.||.-..+|||+ ++++.||++|++.+.+-..                        +.  ..|++||+++|
T Consensus        25 ~~~v~~~~l~pG~~~p~H~H~-~~e~~~Vl~G~~~~~v~~~------------------------e~--~~v~~Gd~i~i   77 (108)
T d2b8ma1          25 HVQINHIVLPRGEQMPKHYSN-SYVHLIIIKGEMTLTLEDQ------------------------EP--HNYKEGNIVYV   77 (108)
T ss_dssp             SCEEEEEEEETTCBCCCEECS-SCEEEEEEESEEEEEETTS------------------------CC--EEEETTCEEEE
T ss_pred             CEEEEEEEECCCCcChhhccc-ccEEEEEEeeeEEEEEecc------------------------cE--EEeecceEeec
Confidence            588999999999999999995 7899999999999987321                        11  26899999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEEE
Q 040805          453 PAGHPVVTVASQNNNLEVVCFE  474 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F~  474 (540)
                      |+|.+|.+.|.++++|.++++.
T Consensus        78 p~~~~H~~~n~~~e~l~~l~v~   99 (108)
T d2b8ma1          78 PFNVKMLIQNINSDILEFFVVK   99 (108)
T ss_dssp             CTTCEEEEECCSSSEEEEEEEE
T ss_pred             cCCceEEEEcCCCCcEEEEEEE
Confidence            9999999999999999999874

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.98  E-value=1.2e-09  Score=106.27  Aligned_cols=81  Identities=21%  Similarity=0.196  Sum_probs=68.5

Q ss_pred             cccceeeeeeeCCCcccc-ccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEE
Q 040805          176 LEKYRLGILIANPQTFVT-PTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK  254 (540)
Q Consensus       176 i~~~rl~~~~l~Pggl~~-Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~  254 (540)
                      ...+.+.++.++||+... +|+|..++++||++|++.+.+    +...+.+++||+++||+|++||+.|+|.+++++++ 
T Consensus       165 ~~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~~~~~~----~~~~~~~~~GD~i~~~~~~pH~~~n~G~~~~~~~l-  239 (250)
T d1sefa_         165 DFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL----DNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYV-  239 (250)
T ss_dssp             TCSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE----TTEEEEEETTCEEEECTTCCEEEEEECSSSCEEEE-
T ss_pred             cccEEEEEEEECCCCccCccCccCceEEEEEeCCEEEEEE----CCEEEEecCCCEEEECCCCCEEeEcCCCCCcEEEE-
Confidence            345677788999999875 466789999999999999888    56789999999999999999999999977788876 


Q ss_pred             EeecCCC
Q 040805          255 FIKSINL  261 (540)
Q Consensus       255 i~~~~~~  261 (540)
                      ++.++|.
T Consensus       240 ~~k~~~~  246 (250)
T d1sefa_         240 YSKDANR  246 (250)
T ss_dssp             EEEECSS
T ss_pred             EEecCCC
Confidence            4556664

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.98  E-value=2e-09  Score=104.40  Aligned_cols=97  Identities=12%  Similarity=0.067  Sum_probs=75.5

Q ss_pred             eeecCCceEEEeccCccccccccccccceeeeeeeCCCccccccc-cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcE
Q 040805          152 RVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTH-LDADAVFFVSWGQGTITVIRENNRESYNVKRGDI  230 (540)
Q Consensus       152 ~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~-~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv  230 (540)
                      .-..+.+.++.+.+.+       ....+.+.+++++||+....|| |..++++||++|++.+.+    +...+.|++||+
T Consensus       145 ~~~~~~~~~r~l~p~~-------~~~~~~~~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~~i----~~~~~~v~~GD~  213 (245)
T d1sfna_         145 FEGDDHLIARKLLPDE-------PAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL----EENYYPVTAGDI  213 (245)
T ss_dssp             TTSCTTEEEEECSCCC-------TTCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE----TTEEEEEETTCE
T ss_pred             CccccceEEEecCCcc-------cccceEEEEEEEccCceeeceecCCceEEEEEeCCEEEEEE----CCEEEEecCCCE
Confidence            3445566666653221       1244677788999999876665 789999999999999988    667899999999


Q ss_pred             EEECCCCeEEEEeCCCCccEEEEEEeecCCC
Q 040805          231 IRVPSGNTFYVTNTDDDEKLYIVKFIKSINL  261 (540)
Q Consensus       231 ~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~  261 (540)
                      |++|++++||+.|+| ++++++|.+- ++|.
T Consensus       214 i~~~~~~~H~~~n~g-~~~~~~l~~k-~~~~  242 (245)
T d1sfna_         214 IWMGAHCPQWYGALG-RNWSKYLLYK-DMNR  242 (245)
T ss_dssp             EEECTTCCEEEEEES-SSCEEEEEEE-ECSS
T ss_pred             EEECCCCCEeeEeCC-CCCEEEEEEe-cCCC
Confidence            999999999999998 5799998544 5654

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.93  E-value=3.9e-09  Score=95.82  Aligned_cols=98  Identities=13%  Similarity=0.203  Sum_probs=73.6

Q ss_pred             eEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCcc
Q 040805          357 ELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSAT  436 (540)
Q Consensus       357 ~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~  436 (540)
                      ....+.+.....++  .|.+.+.+|.||+-..||+| ++.+++||++|++.+.+-......               ..  
T Consensus        26 ~~~~~~~~~~~g~~--~i~v~~~~l~PG~~~~~H~H-~~~e~~~Vl~G~g~~~i~~~~~~~---------------~~--   85 (160)
T d1lr5a_          26 SHITVAGALNHGMK--EVEVWLQTISPGQRTPIHRH-SCEEVFTVLKGKGTLLMGSSSLKY---------------PG--   85 (160)
T ss_dssp             EEEEEECHHHHCCS--SEEEEEEEECTTCBCCEEEE-SSCEEEEEEECCEEEEECCSSSSS---------------CC--
T ss_pred             eEEEeecccCCCcc--EEEEEEEEECCCccccceec-cccEEEEEEeeeEEEEECCccccc---------------cc--
Confidence            44444434344444  58899999999999999998 578999999999999886543210               00  


Q ss_pred             ceEEeeeeCCCcEEEECCCCeEEEEecCC-CCEEEEEEEe
Q 040805          437 YHKVSSRIRTDSAYIVPAGHPVVTVASQN-NNLEVVCFEI  475 (540)
Q Consensus       437 ~~~~~~~l~~GDV~vVPaG~~h~~~n~~~-e~l~~v~F~~  475 (540)
                       +.....|++||+++||+|.+|.+.|.++ ++|.++++..
T Consensus        86 -~~~~~~l~~Gd~~~iP~~~~H~~~N~g~~E~l~~l~i~~  124 (160)
T d1lr5a_          86 -QPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIIS  124 (160)
T ss_dssp             -SCEEEEECTTEEEEECTTCCEEEECCCSSSCEEEEEEEE
T ss_pred             -cceEEEecCCCEEEeCCCCcEEEEECCCCCCEEEEEEEC
Confidence             1123579999999999999999999875 8999987643

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=1.3e-09  Score=105.96  Aligned_cols=81  Identities=17%  Similarity=0.112  Sum_probs=64.4

Q ss_pred             cccceeeeeeeCCCcccc-ccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEE
Q 040805          176 LEKYRLGILIANPQTFVT-PTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVK  254 (540)
Q Consensus       176 i~~~rl~~~~l~Pggl~~-Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~  254 (540)
                      ...+.+.+++++||+... +|+|..+|++||++|+|.+.+    +.+.+.+++||+|+||+|++||+.|+|.++.++++ 
T Consensus       168 ~~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~g~~~i----~~~~~~~~~GD~i~~~~~~ph~~~~~g~~~~~~~~-  242 (253)
T d1rc6a_         168 GFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNL----DNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYI-  242 (253)
T ss_dssp             TCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEES----SSCEEEEETTCEEEECSSEEEEEEEC----CEEEE-
T ss_pred             cccEEEEEEEECCCceEeEEEeCCceEEEEEeCCEEEEEE----CCEEEEecCCCEEEECCCCCEeeeeCCCCCcEEEE-
Confidence            345677788999998764 677889999999999999887    55789999999999999999999999966666666 


Q ss_pred             EeecCCC
Q 040805          255 FIKSINL  261 (540)
Q Consensus       255 i~~~~~~  261 (540)
                      ++.+.|.
T Consensus       243 ~~~~~~~  249 (253)
T d1rc6a_         243 YSKDCNR  249 (253)
T ss_dssp             EEEECSC
T ss_pred             EEECCCC
Confidence            4556664

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.93  E-value=2.8e-09  Score=90.83  Aligned_cols=72  Identities=17%  Similarity=0.308  Sum_probs=61.0

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      .+.+.++.+.||.-..+|+|+.++++||++|++.+.+    +.+.+.|++||+++||+|++|.+.|.+   ++.++++.
T Consensus        36 ~~~i~~~~~~~G~~~~~H~h~~~~~~~vl~G~~~~~~----~~~~~~l~~Gd~~~ip~~~~H~~~a~~---~~~~l~~v  107 (112)
T d1yhfa1          36 DLGITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI----DQETYRVAEGQTIVMPAGIPHALYAVE---AFQMLLVV  107 (112)
T ss_dssp             TEEEEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE----TTEEEEEETTCEEEECTTSCEEEEESS---CEEEEEEE
T ss_pred             CcEEEEEEECCCCCcceEECCCCEEEEEEeCEEEEEE----ccEEEEecCCEEEEcCCCCeEEeEECC---CcEEEEEE
Confidence            4557778999999988998888999999999999887    457899999999999999999999975   34454444

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.88  E-value=2e-09  Score=106.14  Aligned_cols=79  Identities=11%  Similarity=0.167  Sum_probs=68.5

Q ss_pred             ccceeeeeeeCCCcccc-ccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEE
Q 040805          177 EKYRLGILIANPQTFVT-PTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKF  255 (540)
Q Consensus       177 ~~~rl~~~~l~Pggl~~-Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i  255 (540)
                      ..+.+.+++++||+... +|+|..++++||++|++++.+    +.+.+.|++||+|++|++++||++|+| ++++++|.+
T Consensus       187 ~d~~~~i~~~~PG~~~~~~h~H~~ee~~~vl~G~~~~~~----~~~~~~v~~GD~i~~~~~~ph~~~n~g-~~p~~yl~~  261 (273)
T d1sq4a_         187 HDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL----NQDWVEVEAGDFMWLRAFCPQACYSGG-PGRFRYLLY  261 (273)
T ss_dssp             CSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE----TTEEEEEETTCEEEEEESCCEEEECCS-SSCEEEEEE
T ss_pred             cceEEEEEEEccCCccccccccccceEEEEEccEEEEEE----CCEEEEecCCCEEEECCCCCEEeEeCC-CCCEEEEEE
Confidence            45778888999998665 677888999999999999988    567899999999999999999999998 579999966


Q ss_pred             eecCCC
Q 040805          256 IKSINL  261 (540)
Q Consensus       256 ~~~~~~  261 (540)
                      . +.|.
T Consensus       262 k-d~nR  266 (273)
T d1sq4a_         262 K-DVNR  266 (273)
T ss_dssp             E-ECSS
T ss_pred             E-EcCc
Confidence            5 6665

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.86  E-value=7.6e-09  Score=96.64  Aligned_cols=80  Identities=14%  Similarity=0.211  Sum_probs=67.2

Q ss_pred             cceEEEEEEcCCC------cccccccCC--CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeee
Q 040805          373 DITVSYANISKGA------MAAPFYNSR--STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRI  444 (540)
Q Consensus       373 ~isv~~~~L~pgg------m~~PH~h~~--A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  444 (540)
                      ++.+..+.|.||.      |.-.|||+.  ..|+.||++|+|.+.+-.+.+.                      .....+
T Consensus        66 ~l~~~~~~i~PG~~~~e~~~t~gH~H~h~~~~E~~~vl~G~g~~~l~~~~~~----------------------~~~~~v  123 (190)
T d1x82a_          66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGD----------------------AKWISM  123 (190)
T ss_dssp             CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCC----------------------EEEEEE
T ss_pred             CeEEEEEEECCCcccCccccccceECCCCCCeEEEEEEEeEEEEEEeeccCc----------------------eEEEEe
Confidence            6888899999997      445699974  5699999999999999877542                      222479


Q ss_pred             CCCcEEEECCCCeEEEEecCCCCEEEEEEE
Q 040805          445 RTDSAYIVPAGHPVVTVASQNNNLEVVCFE  474 (540)
Q Consensus       445 ~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~  474 (540)
                      .+||+++||+|++|.+.|.|+++|.+++..
T Consensus       124 ~~Gd~v~iP~g~~H~~~N~Gde~L~~l~v~  153 (190)
T d1x82a_         124 EPGTVVYVPPYWAHRTVNIGDEPFIFLAIY  153 (190)
T ss_dssp             CTTCEEEECTTCEEEEEECSSSCEEEEEEE
T ss_pred             cCCcEEEEecceeEEeEECCCCCEEEEEEE
Confidence            999999999999999999999999998763

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.85  E-value=3.4e-09  Score=92.63  Aligned_cols=73  Identities=18%  Similarity=0.255  Sum_probs=61.3

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      .+.+.++.+.||.+  |+|+..+|++||++|++.+.+    +..++.|++||+++||+|+.|.+.|++   +++++.++.
T Consensus        53 ~~~~~~~~~~~g~~--~~~~~~~E~~~vl~G~~~~~~----~g~~~~l~~Gd~~~~p~g~~h~~~~~~---~~~~~~v~~  123 (128)
T d2pyta1          53 SMAAGFMQWDNAFF--PWTLNYDEIDMVLEGELHVRH----EGETMIAKAGDVMFIPKGSSIEFGTPT---SVRFLYVAW  123 (128)
T ss_dssp             SSEEEEEEEEEEEE--EEECSSEEEEEEEEEEEEEEE----TTEEEEEETTCEEEECTTCEEEEEEEE---EEEEEEEEE
T ss_pred             ceEEEEEEECCCcc--ceeCCccEEEEEEEeEEEEEE----CCEEEEecCCCEEEECCCCEEEEEeCC---CEEEEEEEC
Confidence            46677778899864  777899999999999999986    456899999999999999999999975   477777775


Q ss_pred             cC
Q 040805          258 SI  259 (540)
Q Consensus       258 ~~  259 (540)
                      |.
T Consensus       124 Pa  125 (128)
T d2pyta1         124 PA  125 (128)
T ss_dssp             ST
T ss_pred             CC
Confidence            54

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=98.84  E-value=4.5e-09  Score=89.73  Aligned_cols=76  Identities=8%  Similarity=0.096  Sum_probs=65.4

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      ++.+..++|.||+...+|+|+ ..+++||++|++.+.+   ++                      +.  ..|++||++++
T Consensus        35 ~~~~~~~~i~pG~~~~~H~H~-~~e~~~vl~G~~~~~~---~~----------------------~~--~~l~~Gd~~~i   86 (114)
T d1vj2a_          35 NFVMRLFTVEPGGLIDRHSHP-WEHEIFVLKGKLTVLK---EQ----------------------GE--ETVEEGFYIFV   86 (114)
T ss_dssp             SEEEEEEEEEEEEEEEEECCS-SCEEEEEEESEEEEEC---SS----------------------CE--EEEETTEEEEE
T ss_pred             ceEEEEEEECCCCCCCceECC-CcEEEEEEEceeEEEE---ee----------------------ee--eEEecCeEEEE
Confidence            578889999999999999996 5789999999998874   22                      22  47999999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEEEec
Q 040805          453 PAGHPVVTVASQNNNLEVVCFEIN  476 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F~~~  476 (540)
                      |+|.+|++.|.+++++.++++-.+
T Consensus        87 p~~~~H~~~n~~~~~~~~l~iip~  110 (114)
T d1vj2a_          87 EPNEIHGFRNDTDSEVEFLCLIPK  110 (114)
T ss_dssp             CTTCCEEEECCSSSCEEEEEEEEG
T ss_pred             cCCCeEEEEeCCCCCEEEEEEECC
Confidence            999999999999999999998443

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=98.82  E-value=2e-08  Score=88.67  Aligned_cols=90  Identities=10%  Similarity=0.076  Sum_probs=71.7

Q ss_pred             eEEEecCCCCCCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCcc
Q 040805          357 ELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSAT  436 (540)
Q Consensus       357 ~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~  436 (540)
                      ++..+-..+.|..   ++.+..+++.||+-..+|+|+. .+++||++|++.+++-.-                       
T Consensus        21 ~~~~L~~~~~~~~---~~~~~~vtf~PG~~~~~H~H~~-~q~~~Vl~G~~~~~~~g~-----------------------   73 (134)
T d2f4pa1          21 WVKMLVTDENGVF---NTQVYDVVFEPGARTHWHSHPG-GQILIVTRGKGFYQERGK-----------------------   73 (134)
T ss_dssp             EEEEEECCTTCSS---SCEEEEEEECTTCEECSEECTT-CEEEEEEEEEEEEEETTS-----------------------
T ss_pred             EEeeccCCCCCCc---eeEEEEEEECCCCcCccccCCC-CEEEEEEeCEEEEEECCc-----------------------
Confidence            3444444444433   5899999999999999999975 699999999999876321                       


Q ss_pred             ceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEEEec
Q 040805          437 YHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCFEIN  476 (540)
Q Consensus       437 ~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~  476 (540)
                       ..  ..|++||+++||+|.+||..|++++++..|++..+
T Consensus        74 -~~--~~~~~Gd~v~ippg~~H~~~a~~~~~~~~lai~~~  110 (134)
T d2f4pa1          74 -PA--RILKKGDVVEIPPNVVHWHGAAPDEELVHIGISTQ  110 (134)
T ss_dssp             -CC--EEEETTCEEEECTTCCEEEEEBTTBCEEEEEEECC
T ss_pred             -ce--EEEcCCCeEEECCCCceECccCCCCcEEEEEEEec
Confidence             11  26899999999999999999999999999988544

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=98.79  E-value=3.8e-09  Score=107.27  Aligned_cols=89  Identities=17%  Similarity=0.214  Sum_probs=69.7

Q ss_pred             cceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          178 KYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      .+.+..+.+.|+++..|||+ ++++++||++|++++.+   ++.+++.|++||+++||+|++|.+.|++.  ...++.+.
T Consensus       248 ~~~~~~~~~~pg~~~~~~~~~~~~e~~~vleG~~~~~i---~~~~~~~l~~GD~~~vP~g~~h~~~~~~~--~~~~~~~~  322 (348)
T d1juha_         248 TLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQI---GDYAATELGSGDVAFIPGGVEFKYYSEAY--FSKVLFVS  322 (348)
T ss_dssp             EEEEEEECCCCTTSCCCCBCCSSCEEEEEEESCEEEEE---TTSCCEEECTTCEEEECTTCCEEEEESSS--SEEEEEEE
T ss_pred             ceeEEEEEecCCCCCCCcccCCCCEEEEEEeceEEEEe---CCcceEEecCCCEEEECCCCcEEEEeCCC--CcEEEEEE
Confidence            34555668999999999985 78999999999999988   44467899999999999999999999984  35666544


Q ss_pred             ecCCCCCcccccccCCCC
Q 040805          257 KSINLPGQYEAFYGAGGE  274 (540)
Q Consensus       257 ~~~~~pg~~~~f~LaG~~  274 (540)
                        .. |+-+..||++++.
T Consensus       323 --~~-~~g~~~~~~~~g~  337 (348)
T d1juha_         323 --SG-SDGLDQNLVNGGE  337 (348)
T ss_dssp             --ES-SSSHHHHHHHHSE
T ss_pred             --cC-CCchHHHHHhcCc
Confidence              22 2236677777654

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.75  E-value=3.8e-08  Score=81.94  Aligned_cols=79  Identities=8%  Similarity=-0.039  Sum_probs=63.2

Q ss_pred             CCCccccceEEEEEEcCCCcc--cccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeee
Q 040805          367 RPLEDLDITVSYANISKGAMA--APFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRI  444 (540)
Q Consensus       367 p~L~~l~isv~~~~L~pggm~--~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  444 (540)
                      |.....++.+..++|.||+-.  .||+ ..+.|++||++|++.+.+   ++                      +.  ..|
T Consensus        15 p~~~~~~~e~~~~~l~pg~~~~~~~H~-h~~~E~~~Vl~G~~~~~~---~~----------------------~~--~~l   66 (99)
T d1y9qa2          15 PYAADTGLEIFEITLLDHHQQMSSPHA-LGVIEYIHVLEGIMKVFF---DE----------------------QW--HEL   66 (99)
T ss_dssp             EEETTTTEEEEEEEECTTCEEEECCCS-TTCEEEEEEEESCEEEEE---TT----------------------EE--EEE
T ss_pred             cCCCcCCEEEEEEEEeCCcEecccccc-CCcEEEEEEEcCceEEEe---cc----------------------eE--EEe
Confidence            433445799999999999966  5566 477899999999999976   22                      22  479


Q ss_pred             CCCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805          445 RTDSAYIVPAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       445 ~~GDV~vVPaG~~h~~~n~~~e~l~~v~F  473 (540)
                      ++||.+.||++.+|++.|.+++++.++.+
T Consensus        67 ~~GD~~~~~~~~~H~~~n~~~~~~~~~vi   95 (99)
T d1y9qa2          67 QQGEHIRFFSDQPHGYAAVTEKAVFQNIV   95 (99)
T ss_dssp             CTTCEEEEECSSSEEEEESSSCEEEEEEE
T ss_pred             cCCCEEEECCCCeEEEEeCCccCEEEEEE
Confidence            99999999999999999998888755544

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=98.74  E-value=2.1e-08  Score=86.96  Aligned_cols=79  Identities=10%  Similarity=-0.010  Sum_probs=61.3

Q ss_pred             ccccceeeeeeeCCCcccc--c-cccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEE
Q 040805          175 GLEKYRLGILIANPQTFVT--P-THLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLY  251 (540)
Q Consensus       175 Gi~~~rl~~~~l~Pggl~~--P-h~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~  251 (540)
                      .+..+.+   ++.|++...  + ++|..+|++||++|++.+.+-+....+++.|++||.++||++++|.+.|.++++++.
T Consensus        40 ~~~~~~i---~v~~~~~~~~~~~~~H~~eE~~yVl~G~~~~~~g~~~~~~~~~l~~GDsi~~~~~~pH~~~n~~g~~~a~  116 (122)
T d2bnma2          40 SLVPLVV---DVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFTAAKGTGSAK  116 (122)
T ss_dssp             TCEEEEE---EECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEECTTCCEEEEESTTSCCEE
T ss_pred             ccEeEEE---EEeCCCCCccccCCCcccEEEEEEEEEEEEEEEecccCCEEEEEccCcEEEeCCCCCEEEEcCCCCccEE
Confidence            3444444   889987643  2 236789999999999988874334567899999999999999999999974467888


Q ss_pred             EEEEe
Q 040805          252 IVKFI  256 (540)
Q Consensus       252 ~v~i~  256 (540)
                      +++|.
T Consensus       117 ~l~Vt  121 (122)
T d2bnma2         117 LIAVN  121 (122)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88764

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=98.70  E-value=2.3e-08  Score=100.34  Aligned_cols=76  Identities=12%  Similarity=0.107  Sum_probs=64.5

Q ss_pred             ceeeeeeeCCCccccccccC-CCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          179 YRLGILIANPQTFVTPTHLD-ADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      +.+.++.+.||+...||||. .++++||++|++.+.+    +.+++.+++||+++||+|++|++.|.+  .+++++.++.
T Consensus       214 ~~~~~~~~~~G~~~~~H~H~~~~e~~~vl~G~~~~~v----~~~~~~~~~Gd~~~vP~g~~H~~~~~~--~~~~~l~~~~  287 (330)
T d1y3ta1         214 FIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT----DGQEIQLNPGDFLHVPANTVHSYRLDS--HYTKMVGVLV  287 (330)
T ss_dssp             CEEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEE----TTEEEEECTTCEEEECTTCCEEEEECS--SSEEEEEEEE
T ss_pred             EEEEEEEECCCCccCccCcCCccEEEEEEecEEEEEE----CCEEEEeCCCCEEEECcCCcEEeEeCC--CCeEEEEEEC
Confidence            55666789999999999985 7899999999999876    456899999999999999999999976  3688888776


Q ss_pred             cCC
Q 040805          258 SIN  260 (540)
Q Consensus       258 ~~~  260 (540)
                      +..
T Consensus       288 p~~  290 (330)
T d1y3ta1         288 PGL  290 (330)
T ss_dssp             SST
T ss_pred             Ccc
Confidence            543

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.63  E-value=8e-08  Score=97.78  Aligned_cols=91  Identities=14%  Similarity=0.177  Sum_probs=71.1

Q ss_pred             CCceEEEeccCccccccccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECC
Q 040805          156 QHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPS  235 (540)
Q Consensus       156 e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPa  235 (540)
                      .++.++.++.-+.. +..   ..+.+.+..|.||....||+|.+++++||++|+|++.+    +..++.+++||+|+||+
T Consensus       237 ~g~~l~y~nP~tg~-~~~---~ti~~~~~~l~pG~~~~~hrH~~~~v~~v~~G~g~~~i----~g~~~~~~~GDv~~vP~  308 (355)
T d3bu7a1         237 DGLILRYTNPQTGG-HPM---LTMGASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV----GGKRFDWSEHDIFCVPA  308 (355)
T ss_dssp             TBEEEEECCTTTSS-CSS---SSCEEEEEEECTTCBCCCEEESSCEEEEEEECCEEEEE----TTEEEEECTTCEEEECT
T ss_pred             CceEEEeccccccC-CCc---ceeeEEEEEECCCCccCCcCccCcEEEEEEECcEEEEE----CCEEEEeeCCCEEEeCC
Confidence            46677776543221 223   34556666899999999999999999999999999888    56789999999999999


Q ss_pred             CCeEEEEeCCCCccEEEEE
Q 040805          236 GNTFYVTNTDDDEKLYIVK  254 (540)
Q Consensus       236 G~~h~~~N~g~~e~l~~v~  254 (540)
                      ++.|+..|+++.+...++.
T Consensus       309 ~~~h~~~N~s~~e~~~Lf~  327 (355)
T d3bu7a1         309 WTWHEHCNTQERDDACLFS  327 (355)
T ss_dssp             TCCEEEEECCSSCCEEEEE
T ss_pred             CCcEEeecCCCCCcEEEEE
Confidence            9999999998555555443

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=6.8e-08  Score=96.18  Aligned_cols=74  Identities=9%  Similarity=0.068  Sum_probs=66.0

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      +|.+....|.||+...||+|+ +.++.||++|+|.++++..                        +++  .+.+||++++
T Consensus        53 ~l~~~~~~l~PG~~~~~H~H~-~~e~~~vl~G~g~~t~~~~------------------------~~~--~~~~Gd~~~~  105 (308)
T d2d40a1          53 TLYAGLQLIMPGEVAPSHRHN-QSALRFIVEGKGAFTAVDG------------------------ERT--PMNEGDFILT  105 (308)
T ss_dssp             SCEEEEEEECTTCEEEEEEES-SCEEEEEEECSSCEEEETT------------------------EEE--ECCTTCEEEE
T ss_pred             cceeeeEEECCCCccccccCc-hhheEEEEEeeEEEEEecC------------------------EEE--EecCCCEEEe
Confidence            688999999999999999995 6799999999999888764                        333  6999999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEE
Q 040805          453 PAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F  473 (540)
                      |+|.+|...|.+++++.|+.+
T Consensus       106 P~~~~H~~~n~g~e~~~~l~~  126 (308)
T d2d40a1         106 PQWRWHDHGNPGDEPVIWLDG  126 (308)
T ss_dssp             CTTSCEEEECCSSSCEEEEEE
T ss_pred             CCCceEEeEECCCCCEEEEEE
Confidence            999999999999999998875

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.52  E-value=2.2e-07  Score=78.73  Aligned_cols=72  Identities=17%  Similarity=0.314  Sum_probs=59.9

Q ss_pred             ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      -++.+..+.+.||.-..+|+|+ ..++.||++|++.+.+   ++                      +.  ..|++||+++
T Consensus        35 ~~~~i~~~~~~~G~~~~~H~h~-~~~~~~vl~G~~~~~~---~~----------------------~~--~~l~~Gd~~~   86 (112)
T d1yhfa1          35 QDLGITVFSLDKGQEIGRHSSP-GDAMVTILSGLAEITI---DQ----------------------ET--YRVAEGQTIV   86 (112)
T ss_dssp             TTEEEEEEEECTTCEEEEECCS-SEEEEEEEESEEEEEE---TT----------------------EE--EEEETTCEEE
T ss_pred             CCcEEEEEEECCCCCcceEECC-CCEEEEEEeCEEEEEE---cc----------------------EE--EEecCCEEEE
Confidence            3677889999999999999997 4899999999999986   22                      23  3799999999


Q ss_pred             ECCCCeEEEEecCCCCEEEEEE
Q 040805          452 VPAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       452 VPaG~~h~~~n~~~e~l~~v~F  473 (540)
                      ||+|.+|.+.|.+  ++.++++
T Consensus        87 ip~~~~H~~~a~~--~~~~l~~  106 (112)
T d1yhfa1          87 MPAGIPHALYAVE--AFQMLLV  106 (112)
T ss_dssp             ECTTSCEEEEESS--CEEEEEE
T ss_pred             cCCCCeEEeEECC--CcEEEEE
Confidence            9999999999975  4555544

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.44  E-value=5.4e-08  Score=89.53  Aligned_cols=66  Identities=15%  Similarity=0.273  Sum_probs=55.0

Q ss_pred             cccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          191 FVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       191 l~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      +.-.|.|..+|+.||++|+|++.+-..+......+++||+|+||+|+.||+.++. +..+.+|.+|.
T Consensus        92 F~~EH~H~~dEvr~vv~G~g~f~v~~~d~~~~v~~~~GDli~vPag~~H~F~~~~-~~~~~aiRlF~  157 (179)
T d1zrra1          92 FLNEHTHGEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGS-EPNFTAIRIFD  157 (179)
T ss_dssp             HHSCBEESSCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSS-CSSCEEEEEEC
T ss_pred             hcccccCCCceEEEEEeCeEEEEEEcCCeEEEEEEcCCCEEEeCCCCeEccccCC-CCCEEEEEEec
Confidence            4467778889999999999999987655555678999999999999999997765 56788888883

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=98.43  E-value=3.7e-07  Score=92.60  Aligned_cols=74  Identities=11%  Similarity=0.107  Sum_probs=66.0

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      .|.++...|.||....||+| ++.+|.||++|+|.+++|+.                        +++  .+.+||+|++
T Consensus        86 ~l~~~~~~l~PGe~~~~H~H-~~~~~~~vi~G~g~~t~v~g------------------------~~~--~~~~GD~~~~  138 (351)
T d2phda1          86 TMWAGIQYLGPRETAPEHRH-SQNAFRFVVEGEGVWTVVNG------------------------DPV--RMSRGDLLLT  138 (351)
T ss_dssp             SCEEEEEEECTTCEEEEEEE-SSCEEEEEEECEEEEEEETT------------------------EEE--EEETTCEEEE
T ss_pred             hhhhheEEECCCCcCCcccc-ccceeEEEEECCcEEEEECC------------------------EEE--EEeCCCEEEe
Confidence            68889999999999999999 58899999999999888874                        333  6999999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEE
Q 040805          453 PAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F  473 (540)
                      |+|.+|...|.+++++.|+.+
T Consensus       139 P~~~~H~~~n~~d~~~~~l~~  159 (351)
T d2phda1         139 PGWCFHGHMNDTDQPMAWIDG  159 (351)
T ss_dssp             CTTCCEEEEECSSSCEEEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEe
Confidence            999999999998999888764

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.22  E-value=2.1e-06  Score=74.37  Aligned_cols=71  Identities=6%  Similarity=0.165  Sum_probs=56.9

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      .+++....+.||+.   |||+...|+.||++|++.+.+   ++                      +.  ..|++||+++|
T Consensus        53 ~~~~~~~~~~~g~~---~~~~~~~E~~~vl~G~~~~~~---~g----------------------~~--~~l~~Gd~~~~  102 (128)
T d2pyta1          53 SMAAGFMQWDNAFF---PWTLNYDEIDMVLEGELHVRH---EG----------------------ET--MIAKAGDVMFI  102 (128)
T ss_dssp             SSEEEEEEEEEEEE---EEECSSEEEEEEEEEEEEEEE---TT----------------------EE--EEEETTCEEEE
T ss_pred             ceEEEEEEECCCcc---ceeCCccEEEEEEEeEEEEEE---CC----------------------EE--EEecCCCEEEE
Confidence            57788889999864   788999999999999999985   23                      33  36999999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEEEe
Q 040805          453 PAGHPVVTVASQNNNLEVVCFEI  475 (540)
Q Consensus       453 PaG~~h~~~n~~~e~l~~v~F~~  475 (540)
                      |+|..|.+.|.+  ++.++.+.+
T Consensus       103 p~g~~h~~~~~~--~~~~~~v~~  123 (128)
T d2pyta1         103 PKGSSIEFGTPT--SVRFLYVAW  123 (128)
T ss_dssp             CTTCEEEEEEEE--EEEEEEEEE
T ss_pred             CCCCEEEEEeCC--CEEEEEEEC
Confidence            999999998864  456555433

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=98.17  E-value=1.1e-05  Score=69.39  Aligned_cols=78  Identities=9%  Similarity=0.129  Sum_probs=60.7

Q ss_pred             cceEEEEEEcCCCccccccc--CCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEE
Q 040805          373 DITVSYANISKGAMAAPFYN--SRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAY  450 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h--~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~  450 (540)
                      .|-...++|.|++-..+.++  ....+++||++|+..+.+-.....                     +.  ..|++||.+
T Consensus        40 ~~~~~~i~v~~~~~~~~~~~~~H~~eE~~yVl~G~~~~~~g~~~~~---------------------~~--~~l~~GDsi   96 (122)
T d2bnma2          40 SLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENP---------------------KE--ALLPTGASM   96 (122)
T ss_dssp             TCEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSC---------------------EE--EEECTTCEE
T ss_pred             ccEeEEEEEeCCCCCccccCCCcccEEEEEEEEEEEEEEEecccCC---------------------EE--EEEccCcEE
Confidence            57788899999998765442  357899999999999986432210                     23  379999999


Q ss_pred             EECCCCeEEEEe-cCCCCEEEEEE
Q 040805          451 IVPAGHPVVTVA-SQNNNLEVVCF  473 (540)
Q Consensus       451 vVPaG~~h~~~n-~~~e~l~~v~F  473 (540)
                      +||++.||.+.| ++++++.+++.
T Consensus        97 ~~~~~~pH~~~n~~g~~~a~~l~V  120 (122)
T d2bnma2          97 FVEEHVPHAFTAAKGTGSAKLIAV  120 (122)
T ss_dssp             EECTTCCEEEEESTTSCCEEEEEE
T ss_pred             EeCCCCCEEEEcCCCCccEEEEEE
Confidence            999999999988 47888887765

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.09  E-value=7.1e-06  Score=75.02  Aligned_cols=65  Identities=14%  Similarity=0.272  Sum_probs=53.3

Q ss_pred             ccccccCCCeEEEEEeeEEEEEEEecCCc-eEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          192 VTPTHLDADAVFFVSWGQGTITVIRENNR-ESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       192 ~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~-~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      .--|.|..++|.||+.|+|.+.+-..++. ....+++||+|+||+|+.||+.-+. +..+.++-+|.
T Consensus        85 ~~EH~H~~~Evr~vl~G~G~f~v~~~~~~~iri~~~~GDli~iPag~~HwFtl~~-~~~v~aiRlF~  150 (179)
T d1vr3a1          85 FEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDE-KNYVKAMRLFV  150 (179)
T ss_dssp             HSCEECSSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECT-TCCEEEEEEES
T ss_pred             hhceeCCCcEEEEEEeCcEEEEEECCCCcEEEEEEeCCCEEEeCCCccEeccCCC-CCCEEEEEEEC
Confidence            34667778999999999999998765443 3567899999999999999998765 56788888883

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.03  E-value=1.6e-06  Score=79.51  Aligned_cols=68  Identities=15%  Similarity=0.111  Sum_probs=55.9

Q ss_pred             cccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCC
Q 040805          386 MAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQN  465 (540)
Q Consensus       386 m~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~  465 (540)
                      +...|.|+. .+|.||++|+|++.|-.. +                      +.+.-.+.+||+++||+|..||..++.+
T Consensus        92 F~~EH~H~~-dEvr~vv~G~g~f~v~~~-d----------------------~~~~v~~~~GDli~vPag~~H~F~~~~~  147 (179)
T d1zrra1          92 FLNEHTHGE-DEVRFFVEGAGLFCLHIG-D----------------------EVFQVLCEKNDLISVPAHTPHWFDMGSE  147 (179)
T ss_dssp             HHSCBEESS-CEEEEEEESCCCCCEECS-S----------------------CEEEEECCCSCEEEECTTCCBCCCCSSC
T ss_pred             hcccccCCC-ceEEEEEeCeEEEEEEcC-C----------------------eEEEEEEcCCCEEEeCCCCeEccccCCC
Confidence            457899975 899999999999987754 2                      3455679999999999999999988877


Q ss_pred             CCEEEEEEEecC
Q 040805          466 NNLEVVCFEINA  477 (540)
Q Consensus       466 e~l~~v~F~~~a  477 (540)
                      ..+..+.|+.+.
T Consensus       148 ~~~~aiRlF~~~  159 (179)
T d1zrra1         148 PNFTAIRIFDNP  159 (179)
T ss_dssp             SSCEEEEEECCG
T ss_pred             CCEEEEEEecCC
Confidence            778888776554

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=1.6e-05  Score=72.54  Aligned_cols=69  Identities=10%  Similarity=0.200  Sum_probs=57.1

Q ss_pred             cccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCC
Q 040805          386 MAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQN  465 (540)
Q Consensus       386 m~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~  465 (540)
                      +..-|.|+. .+|.||++|+|.+.|-...+                      +.++-.+.+||+++||+|..||...+.+
T Consensus        84 F~~EH~H~~-~Evr~vl~G~G~f~v~~~~~----------------------~~iri~~~~GDli~iPag~~HwFtl~~~  140 (179)
T d1vr3a1          84 FFEEHLHLD-EEIRYILEGSGYFDVRDKED----------------------KWIRISMEKGDMITLPAGIYHRFTLDEK  140 (179)
T ss_dssp             HHSCEECSS-CEEEEEEEEEEEEEEECTTS----------------------CEEEEEEETTEEEEECTTCCEEEEECTT
T ss_pred             HhhceeCCC-cEEEEEEeCcEEEEEECCCC----------------------cEEEEEEeCCCEEEeCCCccEeccCCCC
Confidence            457899975 79999999999999887654                      4666689999999999999999988766


Q ss_pred             CCEEEEEEEecC
Q 040805          466 NNLEVVCFEINA  477 (540)
Q Consensus       466 e~l~~v~F~~~a  477 (540)
                      ..+..+-++++.
T Consensus       141 ~~v~aiRlF~~~  152 (179)
T d1vr3a1         141 NYVKAMRLFVGE  152 (179)
T ss_dssp             CCEEEEEEESSS
T ss_pred             CCEEEEEEECCC
Confidence            677777765554

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=5.6e-05  Score=66.76  Aligned_cols=62  Identities=16%  Similarity=0.254  Sum_probs=47.1

Q ss_pred             ccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEee
Q 040805          192 VTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       192 ~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      ..||-++.-.|.||++|+|.+.+    +..++.+++||+|++|+|.+|...-..++++..++.+..
T Consensus        31 ~Rp~g~~~Y~l~yv~~G~G~~~i----~~~~y~l~~Gdl~li~P~~~H~y~~~~~~~~w~~~wl~F   92 (161)
T d2arca_          31 DRPLGMKGYILNLTIRGQGVVKN----QGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYF   92 (161)
T ss_dssp             EETTCCSSEEEEEEEEECEEEEE----TTEEEEECTTCEEEECTTCCEEEEECTTSSEEEEEEEEE
T ss_pred             ECCCCCCCEEEEEEEEeEEEEEE----CCEEEEecCCeEEEEcCCCcEEEEeCCCCCCEEEEEEEE
Confidence            35665566789999999999887    567899999999999999999644333345666665543

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=97.68  E-value=3.5e-05  Score=62.57  Aligned_cols=67  Identities=19%  Similarity=0.301  Sum_probs=50.1

Q ss_pred             cccccccceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe
Q 040805          172 LLRGLEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN  243 (540)
Q Consensus       172 ~L~Gi~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N  243 (540)
                      .|..+...+..+....||.+.  .+.+.+|++||++|+++|+.  .+ ....++++||+++||+|..-.+.-
T Consensus        11 ~l~~lGv~~~gvW~~~pg~f~--~~y~~~E~~~ileG~v~i~~--~~-G~~~~~~aGD~~~~p~G~~~~W~v   77 (88)
T d1o5ua_          11 KLKELSVEKWPIWEKEVSEFD--WYYDTNETCYILEGKVEVTT--ED-GKKYVIEKGDLVTFPKGLRCRWKV   77 (88)
T ss_dssp             HHHHHTGGGSCEEEECSEEEE--EECSSCEEEEEEEEEEEEEE--TT-CCEEEEETTCEEEECTTCEEEEEE
T ss_pred             HHHhcCCcccceEeecCcEEE--EEcCccEEEEEEEeEEEEEc--CC-CCEEEEeCCCEEEECCCCEEEEEE
Confidence            444344456677899998873  34578999999999998753  33 456789999999999998755544

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=97.48  E-value=0.0009  Score=57.89  Aligned_cols=99  Identities=10%  Similarity=0.056  Sum_probs=70.3

Q ss_pred             cccCCCceEEEecCCCCCCCccccceEEEE-EEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCC
Q 040805          350 SHSNNFGELFEADSNDFRPLEDLDITVSYA-NISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSS  428 (540)
Q Consensus       350 ~~~n~~G~~~~~~~~~~p~L~~l~isv~~~-~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~  428 (540)
                      .|...-|.+..+...+.-...-  -.+.++ +..+|.++..|+|...+.+.+|+.|...+.+.++...            
T Consensus         9 ~~~D~RG~l~~i~~~~~~~f~~--kr~~~~~~~~~g~iRG~H~Hk~~~q~~~vi~G~i~~~~~d~~~~------------   74 (135)
T d2pa7a1           9 KIIDSRGSLVAIEENKNIPFSI--KRVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNII------------   74 (135)
T ss_dssp             EEEETTEEEEEEETTTTSSSCC--CEEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCE------------
T ss_pred             ceECCCCCEEEEEccccccccc--ceEEEEecCCCCcEEeeeccccccEEEEecccEEEEEEEecccc------------
Confidence            4566678887776554322221  134333 4678999999999999999999999999988876431            


Q ss_pred             ccccCCccceEEeeeeCCCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805          429 TREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       429 ~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~~~e~l~~v~F  473 (540)
                               ..+ .-.+.+++++||+|++|.+.+-++ +..++.+
T Consensus        75 ---------~~~-~l~~~~~~l~IPpg~~h~~~~l~~-~s~ll~l  108 (135)
T d2pa7a1          75 ---------QEI-TLDSPAVGLYVGPAVWHEMHDFSS-DCVMMVL  108 (135)
T ss_dssp             ---------EEE-EECCTTEEEEECTTCEEEEECCCT-TCEEEEE
T ss_pred             ---------cee-ecccCCceeeeCCCEeeeEEecCC-CcEEEEE
Confidence                     122 223788999999999999998754 4455555

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=97.45  E-value=0.00081  Score=58.22  Aligned_cols=105  Identities=7%  Similarity=-0.011  Sum_probs=73.7

Q ss_pred             ceeecCCceEEEeccCccccccccccccceeeee-eeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEEee-CC
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLRGLEKYRLGIL-IANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNV-KR  227 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~-~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l-~~  227 (540)
                      ..+..+-|.+..+...+    .++ ...-|+.++ ..++|.++-.|+| ....+++|+.|+..+.+.+......+.+ +.
T Consensus         8 ~~~~D~RG~l~~i~~~~----~~~-f~~kr~~~~~~~~~g~iRG~H~Hk~~~q~~~vi~G~i~~~~~d~~~~~~~~l~~~   82 (135)
T d2pa7a1           8 KKIIDSRGSLVAIEENK----NIP-FSIKRVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSP   82 (135)
T ss_dssp             CEEEETTEEEEEEETTT----TSS-SCCCEEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCT
T ss_pred             CceECCCCCEEEEEccc----ccc-cccceEEEEecCCCCcEEeeeccccccEEEEecccEEEEEEEeccccceeecccC
Confidence            35667789988874321    222 122245443 4678889988887 6889999999999998888776666655 88


Q ss_pred             CcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCC
Q 040805          228 GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLP  262 (540)
Q Consensus       228 GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~p  262 (540)
                      ++.++||+|+.|-+.|.+++  ..++.+.+...+|
T Consensus        83 ~~~l~IPpg~~h~~~~l~~~--s~ll~l~~~~y~~  115 (135)
T d2pa7a1          83 AVGLYVGPAVWHEMHDFSSD--CVMMVLASDYYDE  115 (135)
T ss_dssp             TEEEEECTTCEEEEECCCTT--CEEEEEESSCCCG
T ss_pred             CceeeeCCCEeeeEEecCCC--cEEEEEcCCCCCh
Confidence            89999999999999998743  4444444333333

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=96.96  E-value=0.0029  Score=65.05  Aligned_cols=67  Identities=18%  Similarity=0.268  Sum_probs=45.0

Q ss_pred             ceEEEEEEcCCCcccc-cccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          374 ITVSYANISKGAMAAP-FYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       374 isv~~~~L~pggm~~P-H~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      ..+.++++.++.-... -...++..|++|++|++.+..-....                      ..  ..|++|++|+|
T Consensus       357 F~v~~~~l~~~~~~~~~~~~~~~~~Illv~~G~~~i~~~~~~~----------------------~~--~~l~~G~~~fI  412 (440)
T d1pmia_         357 FSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQITGDDS----------------------TK--QKIDTGYVFFV  412 (440)
T ss_dssp             CEEEEEECCTTTCCEEEECCCSSCEEEEEEESEEEEEETTCGG----------------------GC--EEEETTCEEEE
T ss_pred             eEEEEEEECCCCCceeeecCCCCcEEEEEEcCEEEEEecCCCc----------------------cE--EEeCCceEEEE
Confidence            5677777776542211 11235678999999999886422211                      11  37999999999


Q ss_pred             CCCCeEEEEecC
Q 040805          453 PAGHPVVTVASQ  464 (540)
Q Consensus       453 PaG~~h~~~n~~  464 (540)
                      |+|....+.+.+
T Consensus       413 pa~~~~~i~~~~  424 (440)
T d1pmia_         413 APGSSIELTADS  424 (440)
T ss_dssp             CTTCCEEEEECS
T ss_pred             cCCceEEEEeec
Confidence            999988877654

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.093  Score=48.45  Aligned_cols=104  Identities=14%  Similarity=0.139  Sum_probs=68.1

Q ss_pred             ceeecCCceEEEeccCc--c-cccccccccccee-eeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEecCCceEEee
Q 040805          151 SRVTSQHGRVAFLPKFT--Q-RSKLLRGLEKYRL-GILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRENNRESYNV  225 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~--~-~~~~L~Gi~~~rl-~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~~~~~~~~l  225 (540)
                      .+-.++.|.+.....|.  . ..|...|...+|+ .--.+.||+-+.||=| +-+-|.||++|...  =-+.-+ ..-.|
T Consensus         9 ~rg~~~~~wl~s~~~Fsf~~y~dp~~~~fg~l~v~ndd~~~pg~gf~~HpH~g~eivT~vl~G~~~--H~DS~G-~~~~i   85 (231)
T d1tq5a1           9 ERGHANHGWLDSWHTFSFANYYDPNFMGFSALRVINDDVIEAGQGFGTHPHKDMEILTYVLEGTVE--HQDSMG-NKEQV   85 (231)
T ss_dssp             GSEEEECSSEEEEESSCBTTBCCSSCSCBTTEEEEEEEEECTTCEEEEEEECSCEEEEEEEESEEE--EEESSS-CEEEE
T ss_pred             HCCCCCCCCCcceEeeecCCccCccccCCCceEEEecceecCCCCCCCCCcCCeeEEEEEEeEEEE--ECCCCC-CcEEE
Confidence            45566677777766554  1 1244444444443 3345789977777755 67888999999643  223322 45689


Q ss_pred             CCCcEEEECCC--CeEEEEeCCCCccEEEEEEee
Q 040805          226 KRGDIIRVPSG--NTFYVTNTDDDEKLYIVKFIK  257 (540)
Q Consensus       226 ~~GDv~~iPaG--~~h~~~N~g~~e~l~~v~i~~  257 (540)
                      ++|||-++-||  +.|.-.|..+++++.++-|..
T Consensus        86 ~~G~vq~mtAG~Gi~HsE~~~~~~~~~~~lQiWi  119 (231)
T d1tq5a1          86 PAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIWI  119 (231)
T ss_dssp             ETTCEEEEECTTCEEEEEECCCSSCCEEEEEEEE
T ss_pred             CCCcEEEEecCCcEEEEeeccccCCCeEEEEEEe
Confidence            99999999987  588888876566677766653

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=96.78  E-value=0.00085  Score=58.72  Aligned_cols=101  Identities=8%  Similarity=-0.129  Sum_probs=66.3

Q ss_pred             ccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEE
Q 040805          372 LDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYI  451 (540)
Q Consensus       372 l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~v  451 (540)
                      .|..+.++.+.||+.+.+|+|+ +.+.+||++|+.....-....                      .   ..+.+|+-++
T Consensus        41 tg~~~~l~r~~~G~~~p~H~H~-~~e~~~VL~G~l~~~~g~~~~----------------------g---~~~~~g~y~~   94 (144)
T d2o1qa1          41 MGSWTAIFDCPAGSSFAAHVHV-GPGEYFLTKGKMDVRGGKAAG----------------------G---DTAIAPGYGY   94 (144)
T ss_dssp             TTEEEEEEEECTTEEECCEEES-SCEEEEEEEEEEEETTCGGGT----------------------S---EEEESSEEEE
T ss_pred             CCcEEEEEEeCCCcCcCCCccc-cCEEEEEEEEEEEecCCCcCC----------------------C---ceEeCCceeE
Confidence            3778899999999999999995 778899999998664111100                      0   2467999999


Q ss_pred             ECCCCeEEEEecCCCCEEEEEEEecCCCCccccccccccccccCCHHHHHHH
Q 040805          452 VPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAGRNKIFKVMESEAKELA  503 (540)
Q Consensus       452 VPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG~~svl~~~~~evla~A  503 (540)
                      .|+|.+|....+ .++.+++.....   + ..||.-..|+++-++-+-+.++
T Consensus        95 ~Pag~~H~~~~~-~e~~~~~~~~~G---p-~~~ld~dg~~~~~~~~~~~~~~  141 (144)
T d2o1qa1          95 ESANARHDKTEF-PVASEFYMSFLG---P-LTFVKPDGSPIAVIGWEDAQGA  141 (144)
T ss_dssp             ECTTCEESCCEE-EEEEEEEEEEES---C-EEEECTTSCEEEEECHHHHHHH
T ss_pred             cCCCCeEccccC-CCCEEEEEEEEC---C-eEEECCCCCEEEEEcHHHHHHH
Confidence            999999974333 344554433222   2 3456555566666554444333

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=96.71  E-value=0.00087  Score=58.65  Aligned_cols=72  Identities=6%  Similarity=-0.111  Sum_probs=51.4

Q ss_pred             eeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCC-ceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          180 RLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENN-RESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       180 rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~-~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      ...++.+.||+.+.+|+|...+.+||++|+....-   +. .....+.+|+.++.|+|.+|...- + .+...++..+
T Consensus        44 ~~~l~r~~~G~~~p~H~H~~~e~~~VL~G~l~~~~---g~~~~g~~~~~g~y~~~Pag~~H~~~~-~-~e~~~~~~~~  116 (144)
T d2o1qa1          44 WTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVRG---GKAAGGDTAIAPGYGYESANARHDKTE-F-PVASEFYMSF  116 (144)
T ss_dssp             EEEEEEECTTEEECCEEESSCEEEEEEEEEEEETT---CGGGTSEEEESSEEEEECTTCEESCCE-E-EEEEEEEEEE
T ss_pred             EEEEEEeCCCcCcCCCccccCEEEEEEEEEEEecC---CCcCCCceEeCCceeEcCCCCeEcccc-C-CCCEEEEEEE
Confidence            34556899999999999999999999999875431   21 112478899999999999997422 1 2345554443

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=96.69  E-value=0.047  Score=53.10  Aligned_cols=71  Identities=13%  Similarity=0.232  Sum_probs=44.0

Q ss_pred             eeCCCcccc-ccc---cCCCeEEEEEe----eEEEEEEEecCCc---------------eEEeeCCCcEEEECCCCeEEE
Q 040805          185 IANPQTFVT-PTH---LDADAVFFVSW----GQGTITVIRENNR---------------ESYNVKRGDIIRVPSGNTFYV  241 (540)
Q Consensus       185 ~l~Pggl~~-Ph~---~~A~ei~yV~~----G~g~ig~V~~~~~---------------~~~~l~~GDv~~iPaG~~h~~  241 (540)
                      -+-|.--.. -++   ..-+|..||+.    .+..+|+-.....               ..+.|++||+|+||+|++|.+
T Consensus        95 QvHP~~~~A~~~~~~~~gK~E~wyil~a~~~a~~~~G~~~~~~~e~~~~i~~~~~~~lln~~~l~~Gd~~~ipaG~~HA~  174 (315)
T d1qwra_          95 KVHPDDYYAGENEEGELGKTECWYIIDCKENAEIIYGHTARSKTELVTMINSGDWEGLLRRIKIKPGDFYYVPSGTLHAL  174 (315)
T ss_dssp             EECCCHHHHHHHTTTCCCCCEEEEEEEECTTCEEEEEECCSSHHHHHHHHHTTCHHHHEEEEECCTTCEEEECTTCCEEE
T ss_pred             ccCCCHHHHHhhccccCCCCceEEEEEcCCCcEEEEcCCCCCHHHHHHHHHcCCHHHhCcEEEcccCCEEEeCCCCeeEe
Confidence            567774322 222   24788888886    4566666322110               236999999999999999997


Q ss_pred             EeCCCCccEEEEEEeecCC
Q 040805          242 TNTDDDEKLYIVKFIKSIN  260 (540)
Q Consensus       242 ~N~g~~e~l~~v~i~~~~~  260 (540)
                         +.  ...++-+..++.
T Consensus       175 ---~~--G~l~~Eiq~~SD  188 (315)
T d1qwra_         175 ---CK--GALVLETQQNSD  188 (315)
T ss_dssp             ---CS--SEEEEEEEESCC
T ss_pred             ---cC--CCEEEEEecCCC
Confidence               21  233455554554

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.13  Score=49.11  Aligned_cols=93  Identities=14%  Similarity=0.117  Sum_probs=64.8

Q ss_pred             CCCccccceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCC
Q 040805          367 RPLEDLDITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRT  446 (540)
Q Consensus       367 p~L~~l~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  446 (540)
                      |.....++.+..+.|.+|+...-...+.-..++||++|.+.+.   ...                        ....+..
T Consensus       160 pi~~~s~~~~~~i~l~~g~~~~~~l~~~~~~~lyvi~G~~~v~---g~~------------------------~~~~l~~  212 (288)
T d1j1la_         160 KVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIG---PDD------------------------AQQKIEP  212 (288)
T ss_dssp             CCCCSSCEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEES---CTT------------------------SCEEECT
T ss_pred             ccccCCchhhhhhhcccCceEEEecCCCCeEEEEEEEeeEEec---Ccc------------------------cceeecC
Confidence            3333446788889999999987666555667999999999885   110                        0135789


Q ss_pred             CcEEEECCCCeEEEEecCCCCEEEEEEEecCCCCccccccc
Q 040805          447 DSAYIVPAGHPVVTVASQNNNLEVVCFEINAEGNIRFPLAG  487 (540)
Q Consensus       447 GDV~vVPaG~~h~~~n~~~e~l~~v~F~~~a~~~~~~~LAG  487 (540)
                      ++++++-.|-...+.+.++++..++.|. ...-+.+...-|
T Consensus       213 ~~~~~l~~gd~~~i~~~~~~~a~~LLl~-G~Pi~EPv~~~G  252 (288)
T d1j1la_         213 HHTAVLGEGDSVQVENKDPKRSHFVLIA-GEPLREPVIQHG  252 (288)
T ss_dssp             TEEEEECSCSEEEEECCSSSCEEEEEEE-ECCCCSCCEEET
T ss_pred             ceEEEEcCCCeEEEEeCCCCCCEEEEEE-CCcCCCCEEeeC
Confidence            9999999998887887777888888773 212344444444

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=96.55  E-value=0.005  Score=55.02  Aligned_cols=60  Identities=17%  Similarity=0.282  Sum_probs=49.6

Q ss_pred             eeCCCccccccccCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeC
Q 040805          185 IANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNT  244 (540)
Q Consensus       185 ~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~  244 (540)
                      +=-||.-.-=|+...+|++|=++|...+.++..++.....|++||+|.+|+.++|.-+-.
T Consensus        41 VGGPN~R~DyH~~~~eE~FyQlkG~m~Lkv~e~g~~~di~I~EGe~fLLP~~vpHSPqR~  100 (174)
T d1yfua1          41 VGGPNHRTDYHDDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVRHSPQRP  100 (174)
T ss_dssp             ECSCBCCCCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEEBC
T ss_pred             ecCCcccCccccCcchhheeeeccceEEEEEeCCceEEEEcCCCcEEEeCCCCCCCcccC
Confidence            444444433344468999999999999999998888889999999999999999999774

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=96.47  E-value=0.0046  Score=59.27  Aligned_cols=63  Identities=16%  Similarity=0.184  Sum_probs=47.3

Q ss_pred             eeeeCCCccccccccCCCeEEEEEeeEEEEEEEecCCc-----------------------------------eEEeeCC
Q 040805          183 ILIANPQTFVTPTHLDADAVFFVSWGQGTITVIRENNR-----------------------------------ESYNVKR  227 (540)
Q Consensus       183 ~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~~-----------------------------------~~~~l~~  227 (540)
                      ++.-.+|+-+.|||-..+-++..+.|+=+..+..|...                                   ....|++
T Consensus       126 ~~~~~~g~~~~~H~D~~d~f~~Qv~G~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p  205 (319)
T d1vrba1         126 VYAAKNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTP  205 (319)
T ss_dssp             EEEECSSCCCCSEECSSEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECT
T ss_pred             EEecCCCCCCccccCCCceeEEeecceEEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEECC
Confidence            33444455556666556777888999999988876421                                   2357999


Q ss_pred             CcEEEECCCCeEEEEeCC
Q 040805          228 GDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       228 GDv~~iPaG~~h~~~N~g  245 (540)
                      ||+++||+|..|+..|.+
T Consensus       206 GDvLYiP~gw~H~v~s~~  223 (319)
T d1vrba1         206 GTMLYLPRGLWHSTKSDQ  223 (319)
T ss_dssp             TCEEEECTTCEEEEECSS
T ss_pred             CCEEEeCCCceEEeEecC
Confidence            999999999999999976

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=96.16  E-value=0.0036  Score=50.27  Aligned_cols=52  Identities=10%  Similarity=0.059  Sum_probs=37.9

Q ss_pred             EcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEE
Q 040805          381 ISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVT  460 (540)
Q Consensus       381 L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~  460 (540)
                      .+||.+   +|+-..+|+.||++|++++..  .++                      ..+  .+.+||+++||+|+.-.+
T Consensus        25 ~~pg~f---~~~y~~~E~~~ileG~v~i~~--~~G----------------------~~~--~~~aGD~~~~p~G~~~~W   75 (88)
T d1o5ua_          25 KEVSEF---DWYYDTNETCYILEGKVEVTT--EDG----------------------KKY--VIEKGDLVTFPKGLRCRW   75 (88)
T ss_dssp             ECSEEE---EEECSSCEEEEEEEEEEEEEE--TTC----------------------CEE--EEETTCEEEECTTCEEEE
T ss_pred             ecCcEE---EEEcCccEEEEEEEeEEEEEc--CCC----------------------CEE--EEeCCCEEEECCCCEEEE
Confidence            456554   234468999999999999863  334                      122  589999999999998654


Q ss_pred             E
Q 040805          461 V  461 (540)
Q Consensus       461 ~  461 (540)
                      .
T Consensus        76 ~   76 (88)
T d1o5ua_          76 K   76 (88)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0097  Score=51.66  Aligned_cols=53  Identities=13%  Similarity=0.183  Sum_probs=39.1

Q ss_pred             CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEE-EecCCCCEE--EE
Q 040805          395 STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVT-VASQNNNLE--VV  471 (540)
Q Consensus       395 A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~-~n~~~e~l~--~v  471 (540)
                      .-.|.||++|+|.+.+=.                         +.  ..+++||+|++|+|.+|.. .+.+++++.  |+
T Consensus        38 ~Y~l~yv~~G~G~~~i~~-------------------------~~--y~l~~Gdl~li~P~~~H~y~~~~~~~~w~~~wl   90 (161)
T d2arca_          38 GYILNLTIRGQGVVKNQG-------------------------RE--FVCRPGDILLFPPGEIHHYGRHPEAREWYHQWV   90 (161)
T ss_dssp             SEEEEEEEEECEEEEETT-------------------------EE--EEECTTCEEEECTTCCEEEEECTTSSEEEEEEE
T ss_pred             CEEEEEEEEeEEEEEECC-------------------------EE--EEecCCeEEEEcCCCcEEEEeCCCCCCEEEEEE
Confidence            457999999999997311                         33  3799999999999999964 455555555  45


Q ss_pred             EEE
Q 040805          472 CFE  474 (540)
Q Consensus       472 ~F~  474 (540)
                      .|+
T Consensus        91 ~F~   93 (161)
T d2arca_          91 YFR   93 (161)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            563

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=96.13  E-value=0.018  Score=54.85  Aligned_cols=92  Identities=11%  Similarity=0.099  Sum_probs=54.4

Q ss_pred             EEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCc----ccccccCC-------Ccccc-CCccceEEeeeeCCC
Q 040805          380 NISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSS----SERRHQGS-------STREE-GSATYHKVSSRIRTD  447 (540)
Q Consensus       380 ~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~----~~~~~~~~-------~~~~~-~~~~~~~~~~~l~~G  447 (540)
                      .-.+|+-+.|||.+ .+-++..+.|+=++.+..|....--    ........       ...+. .......+...|++|
T Consensus       128 ~~~~g~~~~~H~D~-~d~f~~Qv~G~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pG  206 (319)
T d1vrba1         128 AAKNGGGFKAHFDA-YTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPG  206 (319)
T ss_dssp             EECSSCCCCSEECS-SEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTT
T ss_pred             ecCCCCCCccccCC-CceeEEeecceEEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEECCC
Confidence            34566778999975 3568888999999999988643100    00000000       00000 000002344579999


Q ss_pred             cEEEECCCCeEEEEecCCCCEEE-EEE
Q 040805          448 SAYIVPAGHPVVTVASQNNNLEV-VCF  473 (540)
Q Consensus       448 DV~vVPaG~~h~~~n~~~e~l~~-v~F  473 (540)
                      ||++||+|+.|+..|.+ ..+.+ +.|
T Consensus       207 DvLYiP~gw~H~v~s~~-~sis~sv~f  232 (319)
T d1vrba1         207 TMLYLPRGLWHSTKSDQ-ATLALNITF  232 (319)
T ss_dssp             CEEEECTTCEEEEECSS-CEEEEEEEE
T ss_pred             CEEEeCCCceEEeEecC-CeEEEEEEe
Confidence            99999999999998864 34444 345

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.88  E-value=0.018  Score=51.34  Aligned_cols=62  Identities=15%  Similarity=0.165  Sum_probs=47.4

Q ss_pred             eeCCCccccccccCCCeEEEEEeeEEEEEEEecCC----ceEEeeCCCcEEEECCCCeEEEEeCCC
Q 040805          185 IANPQTFVTPTHLDADAVFFVSWGQGTITVIRENN----RESYNVKRGDIIRVPSGNTFYVTNTDD  246 (540)
Q Consensus       185 ~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~~----~~~~~l~~GDv~~iPaG~~h~~~N~g~  246 (540)
                      +--||.-.==|+-..+|++|-++|...+-++..+.    .....|++||+|.+|+.++|.-+=..+
T Consensus        39 VGGPN~R~DyH~~~~eE~FYQlkGdm~Lkv~~~~~~~gk~~di~I~EGe~fLLP~~vPHSPqR~~~  104 (175)
T d1zvfa1          39 VGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFAD  104 (175)
T ss_dssp             ECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECTT
T ss_pred             EcCCCcccccccCcchhheeeecCcEEEEEEecCCCCCceeEEeecCCCEEEeCCCCCCCCCCCCC
Confidence            34444443333345899999999999999998752    246789999999999999999887543

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.46  E-value=0.14  Score=49.31  Aligned_cols=42  Identities=17%  Similarity=0.185  Sum_probs=32.1

Q ss_pred             CCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEEEec
Q 040805          394 RSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVTVAS  463 (540)
Q Consensus       394 ~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~~n~  463 (540)
                      .+..|++|++|++.+.   . +                      ..  ..|++|+.++||+....+.+.+
T Consensus       246 ~~~~il~~~~G~~~i~---~-~----------------------~~--~~l~~G~s~~iPA~~~~~~i~g  287 (299)
T d1zx5a1         246 GVMNILYAAEGYFILR---G-K----------------------ET--ADLHRGYSCLVPASTDSFTVES  287 (299)
T ss_dssp             SBCEEEEEEESCEEEE---S-S----------------------SE--EEECTTCEEEECTTCCEEEEEE
T ss_pred             CceEEEEEeccEEEEe---C-C----------------------CE--EEEcCCcEEEEecCCccEEEEc
Confidence            4568999999998763   2 1                      12  3699999999999998776654

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.19  E-value=0.1  Score=47.57  Aligned_cols=74  Identities=19%  Similarity=0.190  Sum_probs=54.8

Q ss_pred             cCCCcccccccC---CCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccc-eEEeeeeCC--CcEEEECCC
Q 040805          382 SKGAMAAPFYNS---RSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY-HKVSSRIRT--DSAYIVPAG  455 (540)
Q Consensus       382 ~pggm~~PH~h~---~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--GDV~vVPaG  455 (540)
                      .+|-++..||+.   .-+++++|+.|+...-+|+..-.                 +.+| +.....|..  +..++||+|
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~-----------------S~Tfgk~~~~~L~~~~~~~i~IP~G  116 (198)
T d2ixca1          54 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREG-----------------SPTFGRWDSVLLDDQDRRTIYVSEG  116 (198)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBT-----------------CTTTTCEEEEEEETTTCCEEEECTT
T ss_pred             ehhhheeeeeecccchhhhhhhhhhceEEEEEEecccc-----------------cccCCcEEEEEeecCCcceEEEcCC
Confidence            799999999974   46789999999999999998542                 1222 234456766  459999999


Q ss_pred             CeEEEEecCCCCEEEEEE
Q 040805          456 HPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       456 ~~h~~~n~~~e~l~~v~F  473 (540)
                      ++|-..+.++ +..++.+
T Consensus       117 ~aHGf~~L~~-~~~i~Y~  133 (198)
T d2ixca1         117 LAHGFLALQD-NSTVMYL  133 (198)
T ss_dssp             CEEEEEECSS-SEEEEEE
T ss_pred             cEEEEEeecC-cceeecc
Confidence            9998888743 4444444

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.16  E-value=0.11  Score=47.20  Aligned_cols=107  Identities=11%  Similarity=0.041  Sum_probs=70.2

Q ss_pred             ceeecCCceEEEeccCcccccccc-----ccccceeeeeeeCCCcccccccc----CCCeEEEEEeeEEEEEEEecC---
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLR-----GLEKYRLGILIANPQTFVTPTHL----DADAVFFVSWGQGTITVIREN---  218 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~-----Gi~~~rl~~~~l~Pggl~~Ph~~----~A~ei~yV~~G~g~ig~V~~~---  218 (540)
                      .+++-+-|.+..+  |+.+  .|.     .....-+.+..-++|.++-.|++    ....+++|+.|+....+|+..   
T Consensus        17 ~~f~D~RG~f~e~--f~~~--~~~~~~~~~~~~~Q~n~S~S~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S   92 (198)
T d2ixca1          17 TIHVDSRGLFFEW--LTDH--GFRAFAGHSLDVRQVNCSVSSAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGS   92 (198)
T ss_dssp             CCEEETTEEEEEE--EEHH--HHHHHHSSCCCCCEEEEEEECTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTC
T ss_pred             CeeEcCCcCeEEe--ecHH--HHHHhhccCccceeeeeeeeehhhheeeeeecccchhhhhhhhhhceEEEEEEeccccc
Confidence            4566667887766  5432  221     22222333345589999989974    367999999999999999854   


Q ss_pred             ----CceEEeeCCC--cEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCC
Q 040805          219 ----NRESYNVKRG--DIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPG  263 (540)
Q Consensus       219 ----~~~~~~l~~G--Dv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg  263 (540)
                          ....+.|...  -.++||+|.+|-+....++  ..++...+...+|.
T Consensus        93 ~Tfgk~~~~~L~~~~~~~i~IP~G~aHGf~~L~~~--~~i~Y~~s~~y~p~  141 (198)
T d2ixca1          93 PTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDN--STVMYLCSAEYNPQ  141 (198)
T ss_dssp             TTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSS--EEEEEEESSCCCTT
T ss_pred             ccCCcEEEEEeecCCcceEEEcCCcEEEEEeecCc--ceeecccCCccCHH
Confidence                2246778664  4999999999999998643  44443443333443

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.15  E-value=0.08  Score=47.62  Aligned_cols=75  Identities=12%  Similarity=0.133  Sum_probs=54.7

Q ss_pred             EcCCCcccccccCC---CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccc-eEEeeeeCC--CcEEEECC
Q 040805          381 ISKGAMAAPFYNSR---STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY-HKVSSRIRT--DSAYIVPA  454 (540)
Q Consensus       381 L~pggm~~PH~h~~---A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--GDV~vVPa  454 (540)
                      -.+|-++..|||..   -+++++|++|....-+|+....+                 .+| +.....|.+  +.+++||+
T Consensus        54 s~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S-----------------~t~g~~~~~~L~~~~~~~l~IP~  116 (183)
T d1dzra_          54 SKKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKES-----------------PTFGQWVGVNLSAENKRQLWIPE  116 (183)
T ss_dssp             EETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTC-----------------TTTTCEEEEEEETTTCCEEEECT
T ss_pred             eccceeEEEEecccccchhhheeeccccEEEEEEeccCCC-----------------CCCCcEEEEeecCCCceEEEEcC
Confidence            37999999999743   36899999999999999986421                 122 334456755  45999999


Q ss_pred             CCeEEEEecCCCCEEEEEE
Q 040805          455 GHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       455 G~~h~~~n~~~e~l~~v~F  473 (540)
                      |++|-..+.++ +..++.+
T Consensus       117 G~aHGf~~l~~-~~~i~Y~  134 (183)
T d1dzra_         117 GFAHGFVTLSE-YAEFLYK  134 (183)
T ss_dssp             TEEEEEEECSS-EEEEEEE
T ss_pred             CeEEEEEEecC-cceEEEe
Confidence            99999888743 4444444

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=95.13  E-value=0.085  Score=47.41  Aligned_cols=81  Identities=12%  Similarity=0.096  Sum_probs=61.7

Q ss_pred             cceeeeeeeCCCcccccccc-CCCeEEEEEeeEEEEEEEec---CC-----ceEEeeCCCcEEEECCC-CeEEEEeCCCC
Q 040805          178 KYRLGILIANPQTFVTPTHL-DADAVFFVSWGQGTITVIRE---NN-----RESYNVKRGDIIRVPSG-NTFYVTNTDDD  247 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~g~ig~V~~---~~-----~~~~~l~~GDv~~iPaG-~~h~~~N~g~~  247 (540)
                      .+-+.++.-.||....+|=| ++..++.|+.|.....+..-   +.     ..+..+.+|||.++... -.|-+.|.+.+
T Consensus        65 ~fel~li~W~pGq~tpiHDH~~~~~~~~vl~G~l~e~~Y~~~~~~~~~l~~~~~~~~~~g~v~~~~~~~~iH~v~N~~~~  144 (186)
T d3elna1          65 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHT  144 (186)
T ss_dssp             TCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSS
T ss_pred             CeEEEEEEccCCCcCCCccCCCCcEEEEEcccceEEEEeecCCCCcccccccceEEecCCCEEEeCCCCCcceeecCCCC
Confidence            46677789999999887745 68999999999999888752   11     13578999999988765 48999998756


Q ss_pred             ccEEEEEEeec
Q 040805          248 EKLYIVKFIKS  258 (540)
Q Consensus       248 e~l~~v~i~~~  258 (540)
                      ++++.|=++.|
T Consensus       145 ~~avsLHvYsp  155 (186)
T d3elna1         145 EPAVSLHLYSP  155 (186)
T ss_dssp             CCEEEEEEEES
T ss_pred             CCeEEEEEeCC
Confidence            66666655544

>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=94.89  E-value=0.13  Score=46.90  Aligned_cols=76  Identities=16%  Similarity=0.149  Sum_probs=54.1

Q ss_pred             EEcCCCcccccccCC---CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccce-EEeeeeC--CCcEEEEC
Q 040805          380 NISKGAMAAPFYNSR---STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYH-KVSSRIR--TDSAYIVP  453 (540)
Q Consensus       380 ~L~pggm~~PH~h~~---A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~--~GDV~vVP  453 (540)
                      .-.+|-++..|||..   ..++++|++|....-+|+....+                 .+|. .....|.  .+.+++||
T Consensus        53 ~s~k~vlRGlH~q~~~~~q~Klv~ci~G~i~dv~vD~R~~S-----------------pTfg~~~~~~L~~~~~~~l~IP  115 (202)
T d1oi6a_          53 MSKRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGS-----------------PTFGQWDSVLMDQQDPRAVYLP  115 (202)
T ss_dssp             EECTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTC-----------------TTTTCEEEEEECSSSCCEEEEC
T ss_pred             cchhheeeeeeecccccchhheeeeccccEEEEEEecccCC-----------------CccceeeeeecccccceeEEec
Confidence            337999999999854   46999999999999999985421                 1121 2233454  55799999


Q ss_pred             CCCeEEEEecCCCCEEEEEE
Q 040805          454 AGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       454 aG~~h~~~n~~~e~l~~v~F  473 (540)
                      +|++|-..+..+ +..++.+
T Consensus       116 ~G~aHGf~~L~d-~t~v~Y~  134 (202)
T d1oi6a_         116 VGVGHAFVALED-DTVMSYM  134 (202)
T ss_dssp             TTCEEEEEECST-TEEEEEE
T ss_pred             cceeEEEeeccc-cceeEEe
Confidence            999999888754 3444433

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.82  E-value=0.12  Score=46.02  Aligned_cols=75  Identities=16%  Similarity=0.181  Sum_probs=53.5

Q ss_pred             EcCCCcccccccCC---CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccc-eEEeeeeC--CCcEEEECC
Q 040805          381 ISKGAMAAPFYNSR---STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY-HKVSSRIR--TDSAYIVPA  454 (540)
Q Consensus       381 L~pggm~~PH~h~~---A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~--~GDV~vVPa  454 (540)
                      -.+|.++..|||..   -+++++|++|+...-+|+..-.+                 .+| +.....|.  .+.+++||+
T Consensus        52 s~kgvlRG~H~q~~~~~q~Klv~ci~G~I~dvvvDlR~~S-----------------~Tfgk~~~~~L~~~~~~~l~IP~  114 (176)
T d1wlta1          52 SRKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSS-----------------PTFGKYVKAELNEENHYMLWIPP  114 (176)
T ss_dssp             ECTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTS-----------------TTTTCEEEEEEETTTCCEEEECT
T ss_pred             echheeeecccccccCCccEEEEEeccceEEEEEeeccCC-----------------CccceeeeEEeeccccceEEEcc
Confidence            37999999999832   35699999999999999985321                 111 22334554  667999999


Q ss_pred             CCeEEEEecCCCCEEEEEE
Q 040805          455 GHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       455 G~~h~~~n~~~e~l~~v~F  473 (540)
                      |++|-..+..+ +..++.+
T Consensus       115 G~ahGf~~l~d-~~~i~Y~  132 (176)
T d1wlta1         115 GFAHGFQALED-SIVIYFI  132 (176)
T ss_dssp             TEEEEEEESSS-EEEEEEE
T ss_pred             ceeeEEeeccc-cceEEEe
Confidence            99999888754 3444433

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.66  E-value=0.13  Score=45.95  Aligned_cols=92  Identities=9%  Similarity=0.099  Sum_probs=61.7

Q ss_pred             ceeecCCceEEEeccCcccccccc--ccc-cceeeeeeeCCCcccccccc----CCCeEEEEEeeEEEEEEEecC-----
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLR--GLE-KYRLGILIANPQTFVTPTHL----DADAVFFVSWGQGTITVIREN-----  218 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~--Gi~-~~rl~~~~l~Pggl~~Ph~~----~A~ei~yV~~G~g~ig~V~~~-----  218 (540)
                      .++..+-|.+..+  |+..  .|.  +.. .....+-.-++|.++-.|++    ....+++|++|+....+|+..     
T Consensus        18 ~~f~D~RG~f~e~--~~~~--~~~~~~~~~~~Q~~~S~s~kgvlRG~H~q~~~~~q~Klv~ci~G~I~dvvvDlR~~S~T   93 (176)
T d1wlta1          18 KVFPDKRGFFLEV--FKSE--DFTKMRIPNVIQTNMSFSRKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPT   93 (176)
T ss_dssp             CCEEETTEEEEEE--EEHH--HHHHTTCCCEEEEEEEEECTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTT
T ss_pred             ceeECCCcCEEEE--ecHH--HHHHcCCCceeEEeeeeechheeeecccccccCCccEEEEEeccceEEEEEeeccCCCc
Confidence            3456667776655  4321  222  111 11233334589999988875    245799999999999999863     


Q ss_pred             --CceEEeeC--CCcEEEECCCCeEEEEeCCC
Q 040805          219 --NRESYNVK--RGDIIRVPSGNTFYVTNTDD  246 (540)
Q Consensus       219 --~~~~~~l~--~GDv~~iPaG~~h~~~N~g~  246 (540)
                        ....+.|.  .+.+++||+|++|-.....+
T Consensus        94 fgk~~~~~L~~~~~~~l~IP~G~ahGf~~l~d  125 (176)
T d1wlta1          94 FGKYVKAELNEENHYMLWIPPGFAHGFQALED  125 (176)
T ss_dssp             TTCEEEEEEETTTCCEEEECTTEEEEEEESSS
T ss_pred             cceeeeEEeeccccceEEEccceeeEEeeccc
Confidence              22355664  66699999999999999863

>d1yuda1 b.82.1.16 (A:1-158) Hypothetical protein SO0799 {Shewanella oneidensis [TaxId: 70863]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein SO0799
species: Shewanella oneidensis [TaxId: 70863]

Probab=94.57  E-value=0.31  Score=42.65  Aligned_cols=128  Identities=17%  Similarity=0.222  Sum_probs=71.3

Q ss_pred             cCCceEEEeccCccccccccc-cccceeeeeeeCCCccccccccCCCeEEEEEeeE-EEEEEEecCCce-EE----eeCC
Q 040805          155 SQHGRVAFLPKFTQRSKLLRG-LEKYRLGILIANPQTFVTPTHLDADAVFFVSWGQ-GTITVIRENNRE-SY----NVKR  227 (540)
Q Consensus       155 ~e~G~i~~l~~f~~~~~~L~G-i~~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~-g~ig~V~~~~~~-~~----~l~~  227 (540)
                      .|+|.++.+-+.+   ....+ =..+-.-++-|.++.+..-|-.+++|+.+...|. ..+-++.+++.. +.    ++..
T Consensus        17 PEGG~fret~rs~---~~~~~~R~~~T~IY~LL~~~~~S~~Hrv~sdEiw~~~~G~pL~l~~~~~~g~~~~~~lG~d~~~   93 (158)
T d1yuda1          17 VEGGFYRSSYRSE---TAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAA   93 (158)
T ss_dssp             TTSSEEEEEEECS---SBSSSSSBSCEEEEEEEETTCCEEEEECSSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTT
T ss_pred             CCCceEEEEEeCC---CCCCCCCcceEEEEEEecCCCCCceEEecCCeEEEEecCCCEEEEEecCCCCeEEeeeccCcCc
Confidence            4788888873322   11111 1222233445677765333335799999999997 567777887653 33    4678


Q ss_pred             CcE--EEECCCCeEEEEeCCCCccEEEEEEeecCCCCC-cccccccCCCCCcccccccCCHHHHHHhcCCCHHHHHHH
Q 040805          228 GDI--IRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPG-QYEAFYGAGGENPESFLRAFSWEILESAFKTKRDSLERV  302 (540)
Q Consensus       228 GDv--~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg-~~~~f~LaG~~~~~s~l~~f~~evLa~Af~v~~~~v~~l  302 (540)
                      |+.  ++||+|+-+.-.-.. + ...+|+...   .|| .|..|-|+            +.+-|.+.|---.+.|++|
T Consensus        94 ge~~q~vVp~g~w~~a~~~~-g-~~sLvsctV---aPGFdf~Dfel~------------~~~~L~~~~P~~~~~I~~l  154 (158)
T d1yuda1          94 GERPQFLVPKGCIFGSAMNQ-D-GFSLVGCMV---SPGFTFDDFELF------------SQEALLAMYPQHKAVVQKL  154 (158)
T ss_dssp             TEESCEEECTTCEEEEEESS-S-SEEEEEEEE---SSCCCGGGCCBC------------BHHHHHHSCCTTHHHHTTS
T ss_pred             CceeEEEEcCCCEEEEEEcC-C-CcEEEEEEE---cCCccchhcccc------------CHHHHHHHCchhHHHHHHH
Confidence            887  999999755443332 2 344443321   244 34555553            3455555554444444443

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=94.34  E-value=0.19  Score=45.25  Aligned_cols=77  Identities=10%  Similarity=0.069  Sum_probs=53.9

Q ss_pred             cCCCcccccccC---CCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeE
Q 040805          382 SKGAMAAPFYNS---RSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPV  458 (540)
Q Consensus       382 ~pggm~~PH~h~---~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h  458 (540)
                      .+|-++..||+.   .-+++++|++|+...-+|+....+   ...+           .+..+.-....+.+++||+|++|
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~i~dv~vDlR~~S---~t~g-----------k~~~~~l~~~~~~~l~IP~G~aH  119 (190)
T d2c0za1          54 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGS---PTYG-----------CWEGTRLDDVSRRAVYLSEGIGH  119 (190)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTC---TTTT-----------CEEEEEEETTTCCEEEECTTEEE
T ss_pred             hhhheeeeeecccccchhheeeeeeeeEEEEEEeecccc---ceeE-----------EEeeeccccccceeEEecCCcEE
Confidence            689999999863   346899999999999999985421   0000           11233334578899999999999


Q ss_pred             EEEecCCCCEEEEEE
Q 040805          459 VTVASQNNNLEVVCF  473 (540)
Q Consensus       459 ~~~n~~~e~l~~v~F  473 (540)
                      -..+.++ +..++-+
T Consensus       120 Gf~~L~~-~t~i~Y~  133 (190)
T d2c0za1         120 GFCAISD-EATLCYL  133 (190)
T ss_dssp             EEEECSS-EEEEEEE
T ss_pred             EEeecCc-hheeEEe
Confidence            8888643 4444443

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

Probab=94.03  E-value=0.18  Score=45.39  Aligned_cols=73  Identities=15%  Similarity=0.131  Sum_probs=54.2

Q ss_pred             ceeeeeeeCCCccccccccCCCeEEEEEeeEEEEEEEecC--Cc-----eEEeeCCCcEEEE--CCCCeEEEEeCCCCcc
Q 040805          179 YRLGILIANPQTFVTPTHLDADAVFFVSWGQGTITVIREN--NR-----ESYNVKRGDIIRV--PSGNTFYVTNTDDDEK  249 (540)
Q Consensus       179 ~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G~g~ig~V~~~--~~-----~~~~l~~GDv~~i--PaG~~h~~~N~g~~e~  249 (540)
                      +-+.++...||....||=|....++.|++|.....+..-.  +.     .+..+.+||+.++  +.|.+|.+.|..+++.
T Consensus        68 f~i~~i~W~pG~~tpiHdH~~w~~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~l~~G~v~~~~~~~~~IH~v~N~~~~~~  147 (192)
T d2gm6a1          68 FSIVSFVWGPGQRTPIHDHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDDRV  147 (192)
T ss_dssp             CEEEEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSSSC
T ss_pred             EEEEEEecCCCCCCCCCCCCCceEEEEEcCeEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCceeEEecCCCCcc
Confidence            4455668899999999977666888899999888877532  11     3457999999877  4468999999754544


Q ss_pred             EE
Q 040805          250 LY  251 (540)
Q Consensus       250 l~  251 (540)
                      .+
T Consensus       148 av  149 (192)
T d2gm6a1         148 SI  149 (192)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.92  E-value=0.095  Score=50.82  Aligned_cols=62  Identities=18%  Similarity=0.178  Sum_probs=46.9

Q ss_pred             eeCCCccccccccC-CCeEEEEEeeEEEEEEEecCC------------------------------------ceEEeeCC
Q 040805          185 IANPQTFVTPTHLD-ADAVFFVSWGQGTITVIRENN------------------------------------RESYNVKR  227 (540)
Q Consensus       185 ~l~Pggl~~Ph~~~-A~ei~yV~~G~g~ig~V~~~~------------------------------------~~~~~l~~  227 (540)
                      -|-+.+...|.|.| .+-++.++.|+=++.++.|..                                    .....|++
T Consensus       174 wiG~~gs~t~~H~D~~~~~~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~~~~~l~p  253 (335)
T d1h2ka_         174 LIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGP  253 (335)
T ss_dssp             EEECTTCEEEEECCSEEEEEEEEESCEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCEEEEEECT
T ss_pred             EEcCCCCCCccccccccceEEEeccceEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCceEEEECC
Confidence            45666665665554 456788999999999986641                                    12247999


Q ss_pred             CcEEEECCCCeEEEEeCCC
Q 040805          228 GDIIRVPSGNTFYVTNTDD  246 (540)
Q Consensus       228 GDv~~iPaG~~h~~~N~g~  246 (540)
                      ||+++||+|..|++.|.++
T Consensus       254 Gd~L~iP~~w~H~V~~~~~  272 (335)
T d1h2ka_         254 GDVLYIPMYWWHHIESLLN  272 (335)
T ss_dssp             TCEEEECTTCEEEEEECTT
T ss_pred             CCEEeeCCCCeEEEEEcCC
Confidence            9999999999999999753

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.84  E-value=0.26  Score=44.07  Aligned_cols=107  Identities=7%  Similarity=-0.015  Sum_probs=68.1

Q ss_pred             ceeecCCceEEEeccCcccccccc-----ccccceeeeeeeCCCccccccccC----CCeEEEEEeeEEEEEEEecC---
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLR-----GLEKYRLGILIANPQTFVTPTHLD----ADAVFFVSWGQGTITVIREN---  218 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~-----Gi~~~rl~~~~l~Pggl~~Ph~~~----A~ei~yV~~G~g~ig~V~~~---  218 (540)
                      ..+.-+=|.+..+  |+..  .+.     .....-+.+..-++|.++--|++.    ...+++|++|+....+|+..   
T Consensus        18 ~~f~D~RG~f~e~--f~~~--~~~~~~~~~~~~~q~n~S~s~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S   93 (183)
T d1dzra_          18 KVFGDERGFFFES--YNQQ--TFEELIGRKVTFVQDNHSKSKKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKES   93 (183)
T ss_dssp             CEEEETTEEEEEE--EEHH--HHHHHHSSCCCCCEEEEEEEETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTC
T ss_pred             CceecCCcCEEEe--echh--hHHHhcccCcceeeeEEeeeccceeEEEEecccccchhhheeeccccEEEEEEeccCCC
Confidence            3456677777665  4422  211     112222333345799999888742    46899999999999999853   


Q ss_pred             ----CceEEeeCC--CcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCC
Q 040805          219 ----NRESYNVKR--GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPG  263 (540)
Q Consensus       219 ----~~~~~~l~~--GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg  263 (540)
                          ...++.|.+  +..++||+|.+|-+....+  ...++...+...+|+
T Consensus        94 ~t~g~~~~~~L~~~~~~~l~IP~G~aHGf~~l~~--~~~i~Y~~~~~y~p~  142 (183)
T d1dzra_          94 PTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSE--YAEFLYKATNYYSPS  142 (183)
T ss_dssp             TTTTCEEEEEEETTTCCEEEECTTEEEEEEECSS--EEEEEEEESSCCCTT
T ss_pred             CCCCcEEEEeecCCCceEEEEcCCeEEEEEEecC--cceEEEeCCcccCcc
Confidence                224567755  5599999999999999863  333433343333444

>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.80  E-value=0.3  Score=43.65  Aligned_cols=74  Identities=15%  Similarity=0.219  Sum_probs=53.4

Q ss_pred             cCCCcccccccCC--CcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccc-eEEeeeeCC--CcEEEECCCC
Q 040805          382 SKGAMAAPFYNSR--STKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY-HKVSSRIRT--DSAYIVPAGH  456 (540)
Q Consensus       382 ~pggm~~PH~h~~--A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--GDV~vVPaG~  456 (540)
                      .+|.++..||+..  -+++++|++|+...-+|+..-.+                 .+| +.....|..  +..++||+|+
T Consensus        54 ~~~vlRG~H~q~~~~q~Klv~~~~G~I~dv~vD~R~~S-----------------~tfgk~~~~~L~~~~~~~l~IP~G~  116 (183)
T d1ep0a_          54 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNS-----------------DTYGEWTGVRLSDENRREFFIPEGF  116 (183)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTC-----------------TTTTCEEEEEEETTTCCEEEECTTE
T ss_pred             ccCceEEeeecCCCcHHhhhcccccEEEEEEEeccCCC-----------------CcCCeeeEEEecCCCcceeEecCCc
Confidence            6899999999743  36899999999999999986321                 112 233345644  6699999999


Q ss_pred             eEEEEecCCCCEEEEEE
Q 040805          457 PVVTVASQNNNLEVVCF  473 (540)
Q Consensus       457 ~h~~~n~~~e~l~~v~F  473 (540)
                      +|-..+-.+ +..++.+
T Consensus       117 aHGf~~L~d-~~~i~Y~  132 (183)
T d1ep0a_         117 AHGFLALSD-ECIVNYK  132 (183)
T ss_dssp             EEEEEECSS-EEEEEEE
T ss_pred             eeeeeeccC-ceEEEEe
Confidence            998888643 4444444

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.65  E-value=0.11  Score=46.62  Aligned_cols=74  Identities=16%  Similarity=0.216  Sum_probs=53.5

Q ss_pred             cCCCccccccc--CCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccc-eEEeeeeCC--CcEEEECCCC
Q 040805          382 SKGAMAAPFYN--SRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATY-HKVSSRIRT--DSAYIVPAGH  456 (540)
Q Consensus       382 ~pggm~~PH~h--~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--GDV~vVPaG~  456 (540)
                      .+|.++..||+  +.-+++++|++|+...-+|+..-.+                 .+| +.....|..  +.+++||+|+
T Consensus        57 ~kgvlRG~H~q~~~~q~Klv~~i~G~I~dvvvDlR~~S-----------------~Tfgk~~~~~L~~~~~~~l~IP~G~  119 (184)
T d2ixha1          57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGS-----------------PTFGQWVGERLSAENKRQMWIPAGF  119 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTS-----------------TTTTCEEEEEEETTTCCEEEECTTE
T ss_pred             ccCceEEEEEcccchhheecceeeeEEEEEEeecccCC-----------------CCCCceEEeeecccCccEEEecCCe
Confidence            58999999996  3356899999999999999985421                 111 234456655  6699999999


Q ss_pred             eEEEEecCCCCEEEEEE
Q 040805          457 PVVTVASQNNNLEVVCF  473 (540)
Q Consensus       457 ~h~~~n~~~e~l~~v~F  473 (540)
                      +|-..+-++ +..++-+
T Consensus       120 aHGf~~L~~-~~~v~Y~  135 (184)
T d2ixha1         120 AHGFVVLSE-YAEFLYK  135 (184)
T ss_dssp             EEEEEECSS-EEEEEEE
T ss_pred             EEEEEecCC-ceEEEec
Confidence            998888743 3444433

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.052  Score=52.79  Aligned_cols=92  Identities=8%  Similarity=0.013  Sum_probs=54.2

Q ss_pred             EEEEcCCCccc-ccccCCCcEEEEEEeceEEEEEEcCCCCC----Ccccc--cccCC-----Cc-ccc-CCccceEEeee
Q 040805          378 YANISKGAMAA-PFYNSRSTKVAVVVAGDGYIEIACPHVSR----SSSER--RHQGS-----ST-REE-GSATYHKVSSR  443 (540)
Q Consensus       378 ~~~L~pggm~~-PH~h~~A~ei~yV~~G~g~v~vv~p~~~~----~~~~~--~~~~~-----~~-~~~-~~~~~~~~~~~  443 (540)
                      .+-|.+.|-.+ .||-+. +-+..++.|+=++.++.|....    .....  .....     .. ++. .-...+.+...
T Consensus       172 ~lwiG~~gs~t~~H~D~~-~~~~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~~~~~  250 (335)
T d1h2ka_         172 LLLIGMEGNVTPAHYDEQ-QNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETV  250 (335)
T ss_dssp             EEEEECTTCEEEEECCSE-EEEEEEEESCEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCEEEEE
T ss_pred             EEEEcCCCCCCccccccc-cceEEEeccceEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCceEEE
Confidence            34556555554 588654 5689999999999999885310    00000  00000     00 000 00111345567


Q ss_pred             eCCCcEEEECCCCeEEEEecCCCCEEE
Q 040805          444 IRTDSAYIVPAGHPVVTVASQNNNLEV  470 (540)
Q Consensus       444 l~~GDV~vVPaG~~h~~~n~~~e~l~~  470 (540)
                      |++||+++||+|+.|.+.|..+..+.+
T Consensus       251 l~pGd~L~iP~~w~H~V~~~~~~~~si  277 (335)
T d1h2ka_         251 VGPGDVLYIPMYWWHHIESLLNGGITI  277 (335)
T ss_dssp             ECTTCEEEECTTCEEEEEECTTSCCEE
T ss_pred             ECCCCEEeeCCCCeEEEEEcCCCCeEE
Confidence            999999999999999999865545554

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=93.54  E-value=0.41  Score=42.95  Aligned_cols=93  Identities=8%  Similarity=-0.018  Sum_probs=61.9

Q ss_pred             eeecCCceEEEeccCcccc--cccc-ccccceeeeeeeCCCcccccccc----CCCeEEEEEeeEEEEEEEecCCc----
Q 040805          152 RVTSQHGRVAFLPKFTQRS--KLLR-GLEKYRLGILIANPQTFVTPTHL----DADAVFFVSWGQGTITVIRENNR----  220 (540)
Q Consensus       152 ~~~~e~G~i~~l~~f~~~~--~~L~-Gi~~~rl~~~~l~Pggl~~Ph~~----~A~ei~yV~~G~g~ig~V~~~~~----  220 (540)
                      .+.-+-|.+..+  |....  ..+. ........+..-.+|.++-.|+.    ....+++|++|+....+|+....    
T Consensus        18 ~~~D~RG~f~e~--f~~~~~~~~~~~~~~~~q~n~S~s~kgvlRGlH~q~~~~~q~Klv~~i~G~i~dv~vDlR~~S~t~   95 (190)
T d2c0za1          18 QRADPRGVFLDW--YHVDRFAEAIGRPLRLAQANLSVSVRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTY   95 (190)
T ss_dssp             EEEETTEEEEEC--CCHHHHHHHHSSCCCCCEEEEEEEETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTT
T ss_pred             ceecCCcCEeee--hhHHHHHHhhccCccceeeeehhhhhhheeeeeecccccchhheeeeeeeeEEEEEEeecccccee
Confidence            455566777665  44210  0011 12222333345578999888863    35689999999999999986521    


Q ss_pred             ---eEE--eeCCCcEEEECCCCeEEEEeCCC
Q 040805          221 ---ESY--NVKRGDIIRVPSGNTFYVTNTDD  246 (540)
Q Consensus       221 ---~~~--~l~~GDv~~iPaG~~h~~~N~g~  246 (540)
                         ..+  ..+.+.+++||+|.+|-.....+
T Consensus        96 gk~~~~~l~~~~~~~l~IP~G~aHGf~~L~~  126 (190)
T d2c0za1          96 GCWEGTRLDDVSRRAVYLSEGIGHGFCAISD  126 (190)
T ss_dssp             TCEEEEEEETTTCCEEEECTTEEEEEEECSS
T ss_pred             EEEeeeccccccceeEEecCCcEEEEeecCc
Confidence               233  44788999999999999999863

>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.52  E-value=0.29  Score=43.71  Aligned_cols=107  Identities=8%  Similarity=0.015  Sum_probs=67.2

Q ss_pred             ceeecCCceEEEeccCcccccccc----ccccceeeeeeeCCCccccccccC---CCeEEEEEeeEEEEEEEecC-----
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLR----GLEKYRLGILIANPQTFVTPTHLD---ADAVFFVSWGQGTITVIREN-----  218 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~----Gi~~~rl~~~~l~Pggl~~Ph~~~---A~ei~yV~~G~g~ig~V~~~-----  218 (540)
                      .++.-+-|.+..+  |...  .|.    +....-+.+..-.+|.++-.|++.   ...+++|++|+....+|+..     
T Consensus        18 ~~f~D~RG~f~e~--f~~~--~~~~~~~~~~~~q~n~s~s~~~vlRG~H~q~~~~q~Klv~~~~G~I~dv~vD~R~~S~t   93 (183)
T d1ep0a_          18 EVYTDERGYFMET--FNEA--IFQENGLEVRFVQDNESMSVRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDT   93 (183)
T ss_dssp             CEEEETTEEEECC--CCHH--HHHHTTCCCCCCEEEEEEEETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTT
T ss_pred             ceeECCCcCEEee--hhhH--HHHHhCCCceeeEeeeeeeccCceEEeeecCCCcHHhhhcccccEEEEEEEeccCCCCc
Confidence            3456666777765  5421  222    122222222234789998888742   46899999999999999854     


Q ss_pred             --CceEEeeCC--CcEEEECCCCeEEEEeCCCCccEEEEEEeecCCCCC
Q 040805          219 --NRESYNVKR--GDIIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPG  263 (540)
Q Consensus       219 --~~~~~~l~~--GDv~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg  263 (540)
                        ....+.|..  +..++||+|.+|-..-..+  ...++...+...+|+
T Consensus        94 fgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~d--~~~i~Y~~s~~y~p~  140 (183)
T d1ep0a_          94 YGEWTGVRLSDENRREFFIPEGFAHGFLALSD--ECIVNYKCTELYHPE  140 (183)
T ss_dssp             TTCEEEEEEETTTCCEEEECTTEEEEEEECSS--EEEEEEEESSCCCGG
T ss_pred             CCeeeEEEecCCCcceeEecCCceeeeeeccC--ceEEEEeccCCcCcc
Confidence              224556655  6699999999999999763  344443443333343

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Streptococcus suis [TaxId: 1307]

Probab=93.42  E-value=0.098  Score=47.46  Aligned_cols=73  Identities=11%  Similarity=0.014  Sum_probs=52.0

Q ss_pred             cCCCcccccccCCCcEEEEEE-eceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCeEEE
Q 040805          382 SKGAMAAPFYNSRSTKVAVVV-AGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHPVVT  460 (540)
Q Consensus       382 ~pggm~~PH~h~~A~ei~yV~-~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~h~~  460 (540)
                      .+|-++..||++.+ ++++|+ .|....-+|+...+  ++  .             .+.+...|..+..++||+|++|-.
T Consensus        65 ~kgvlRGlH~q~~~-k~v~~~~~G~i~~V~vD~R~S--~t--~-------------g~~~~~~l~~~~~i~IP~G~aHGf  126 (194)
T d1nxma_          65 RKNVLRGLHAEPWD-KYISVADGGKVLGTWVDLREG--ET--F-------------GNTYQTVIDASKSIFVPRGVANGF  126 (194)
T ss_dssp             ETTBEEEEEECSSC-EEEEECSSCCEEEEEEECBSS--TT--T-------------TCEEEEEECTTEEEEECTTEEEEE
T ss_pred             eeeEEEEEEeccch-hhhhhccccceeEEEEEeccc--cc--c-------------ceeeeeeeccCceEEEecceeeEE
Confidence            68999999999765 556555 69998888887431  00  1             134556789999999999999988


Q ss_pred             EecCCCCEEEEEE
Q 040805          461 VASQNNNLEVVCF  473 (540)
Q Consensus       461 ~n~~~e~l~~v~F  473 (540)
                      .+..+ +..++.+
T Consensus       127 ~tL~d-~t~i~Y~  138 (194)
T d1nxma_         127 QVLSD-FVAYSYL  138 (194)
T ss_dssp             EECSS-EEEEEEE
T ss_pred             Eeecc-ceeEEEe
Confidence            88744 3444433

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.34  E-value=0.077  Score=53.64  Aligned_cols=44  Identities=18%  Similarity=0.186  Sum_probs=35.8

Q ss_pred             CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCC
Q 040805          198 DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       198 ~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g  245 (540)
                      ++++++||.+|++++..    .--...+++||+++||+|+.+.+.=.+
T Consensus       150 DGDeLi~~~~Gsg~l~T----efG~L~v~pGDyvVIPRG~~frv~~~~  193 (439)
T d1eyba_         150 DGDFLIVPQKGNLLIYT----EFGKMLVQPNEICVIQRGMRFSIDVFE  193 (439)
T ss_dssp             SEEEEEEEEESCEEEEE----TTEEEEECTTEEEEECTTCCEEEECSS
T ss_pred             CCCEEEEEEeCcEEEEE----eeeEEEecCCcEEEecCceEEEEecCC
Confidence            68899999999997765    222568999999999999988875543

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=93.19  E-value=0.15  Score=51.72  Aligned_cols=76  Identities=13%  Similarity=0.242  Sum_probs=51.1

Q ss_pred             ceeeeeeeCCCcc--ccccccCCCeEEEEEeeEEEEEEEecC-CceEEeeCCCcEEEECCCCeEEEEeCCCC--ccEEEE
Q 040805          179 YRLGILIANPQTF--VTPTHLDADAVFFVSWGQGTITVIREN-NRESYNVKRGDIIRVPSGNTFYVTNTDDD--EKLYIV  253 (540)
Q Consensus       179 ~rl~~~~l~Pggl--~~Ph~~~A~ei~yV~~G~g~ig~V~~~-~~~~~~l~~GDv~~iPaG~~h~~~N~g~~--e~l~~v  253 (540)
                      +.+..+++.++.-  ....-.+...|++|++|+++|..  .+ ...+..|++||+|+||+|....+.+.+.+  +.+.++
T Consensus       357 F~v~~~~l~~~~~~~~~~~~~~~~~Illv~~G~~~i~~--~~~~~~~~~l~~G~~~fIpa~~~~~i~~~~~~~~~~~~~~  434 (440)
T d1pmia_         357 FSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQI--TGDDSTKQKIDTGYVFFVAPGSSIELTADSANQDQDFTTY  434 (440)
T ss_dssp             CEEEEEECCTTTCCEEEECCCSSCEEEEEEESEEEEEE--TTCGGGCEEEETTCEEEECTTCCEEEEECSSCCSSCCEEE
T ss_pred             eEEEEEEECCCCCceeeecCCCCcEEEEEEcCEEEEEe--cCCCccEEEeCCceEEEEcCCceEEEEeecCCCCCceEEE
Confidence            3444447776532  12222457899999999998765  22 23468999999999999998888776532  355555


Q ss_pred             EEe
Q 040805          254 KFI  256 (540)
Q Consensus       254 ~i~  256 (540)
                      ..|
T Consensus       435 rA~  437 (440)
T d1pmia_         435 RAF  437 (440)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            444

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.095  Score=52.97  Aligned_cols=77  Identities=13%  Similarity=0.114  Sum_probs=52.3

Q ss_pred             CCCCccccceEEEEEEcCCCccc-ccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeee
Q 040805          366 FRPLEDLDITVSYANISKGAMAA-PFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRI  444 (540)
Q Consensus       366 ~p~L~~l~isv~~~~L~pggm~~-PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  444 (540)
                      -|.++ .||++- +-.-.-+|-- -.+|.++++++||-+|+|.+.--.                         -.+  .+
T Consensus       123 d~~~~-~G~aih-iy~~n~sM~~~~f~NADGDeLi~~~~Gsg~l~Tef-------------------------G~L--~v  173 (439)
T d1eyba_         123 DIKSN-NGLAIH-IFLCNTSMENRCFYNSDGDFLIVPQKGNLLIYTEF-------------------------GKM--LV  173 (439)
T ss_dssp             CGGGT-CCEEEE-EEEECSCCCSEEEEESSEEEEEEEEESCEEEEETT-------------------------EEE--EE
T ss_pred             Ccccc-cCcEEE-EEecCCCCccceeEcCCCCEEEEEEeCcEEEEEee-------------------------eEE--Ee
Confidence            34444 255554 3333456654 468999999999999999987322                         233  69


Q ss_pred             CCCcEEEECCCCeEEEEecCCCCEEEEEE
Q 040805          445 RTDSAYIVPAGHPVVTVASQNNNLEVVCF  473 (540)
Q Consensus       445 ~~GDV~vVPaG~~h~~~n~~~e~l~~v~F  473 (540)
                      ++||++|||+|..+.+.-.+  +.....+
T Consensus       174 ~pGDyvVIPRG~~frv~~~~--~~r~yii  200 (439)
T d1eyba_         174 QPNEICVIQRGMRFSIDVFE--ETRGYIL  200 (439)
T ss_dssp             CTTEEEEECTTCCEEEECSS--SEEEEEE
T ss_pred             cCCcEEEecCceEEEEecCC--CceEEEE
Confidence            99999999999988765443  4444333

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=92.54  E-value=0.4  Score=42.36  Aligned_cols=61  Identities=5%  Similarity=0.077  Sum_probs=46.9

Q ss_pred             EEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCe
Q 040805          378 YANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHP  457 (540)
Q Consensus       378 ~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~  457 (540)
                      ++.=.|+.=.-=|+| -..|+.|=++|...+.|+..+                       +..+..+++||+|.+|+..|
T Consensus        39 MvVGGPN~R~DyH~~-~~eE~FyQlkG~m~Lkv~e~g-----------------------~~~di~I~EGe~fLLP~~vp   94 (174)
T d1yfua1          39 TVVGGPNHRTDYHDD-PLEEFFYQLRGNAYLNLWVDG-----------------------RRERADLKEGDIFLLPPHVR   94 (174)
T ss_dssp             EEECSCBCCCCEEEC-SSCEEEEEEESCEEEEEEETT-----------------------EEEEEEECTTCEEEECTTCC
T ss_pred             EEecCCcccCccccC-cchhheeeeccceEEEEEeCC-----------------------ceEEEEcCCCcEEEeCCCCC
Confidence            344455555566775 356799999999999999753                       33456899999999999999


Q ss_pred             EEEEe
Q 040805          458 VVTVA  462 (540)
Q Consensus       458 h~~~n  462 (540)
                      |.-.-
T Consensus        95 HSPqR   99 (174)
T d1yfua1          95 HSPQR   99 (174)
T ss_dssp             EEEEB
T ss_pred             CCccc
Confidence            99765

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.02  E-value=0.47  Score=42.38  Aligned_cols=91  Identities=7%  Similarity=-0.041  Sum_probs=61.5

Q ss_pred             ceeecCCceEEEeccCcccccccc-----ccccceeeeeeeCCCcccccccc---CCCeEEEEEeeEEEEEEEecC----
Q 040805          151 SRVTSQHGRVAFLPKFTQRSKLLR-----GLEKYRLGILIANPQTFVTPTHL---DADAVFFVSWGQGTITVIREN----  218 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~~~L~-----Gi~~~rl~~~~l~Pggl~~Ph~~---~A~ei~yV~~G~g~ig~V~~~----  218 (540)
                      ..+.-+-|.+..+  |+..  .|.     .....-..+..-++|.++-.|+.   ....+++|++|+....+|+..    
T Consensus        20 ~~f~D~RG~f~e~--f~~~--~~~~~~~~~~~~~q~n~S~s~kgvlRG~H~q~~~~q~Klv~~i~G~I~dvvvDlR~~S~   95 (184)
T d2ixha1          20 RVFGDDRGFFFES--YNQR--AFEEACGHPVSFVQDNHSRSARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSP   95 (184)
T ss_dssp             CCEEETTEEECCS--CCHH--HHHHHHSSCCCCCEEEEEEEETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTST
T ss_pred             ceEecCCccEEEe--ecHH--HHHHhhCCCcccccceEEEcccCceEEEEEcccchhheecceeeeEEEEEEeecccCCC
Confidence            3455666776655  5422  222     12222233334478999888863   356899999999999999843    


Q ss_pred             ---CceEEeeCC--CcEEEECCCCeEEEEeCC
Q 040805          219 ---NRESYNVKR--GDIIRVPSGNTFYVTNTD  245 (540)
Q Consensus       219 ---~~~~~~l~~--GDv~~iPaG~~h~~~N~g  245 (540)
                         ....+.|..  +.+++||+|++|-..-..
T Consensus        96 Tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~  127 (184)
T d2ixha1          96 TFGQWVGERLSAENKRQMWIPAGFAHGFVVLS  127 (184)
T ss_dssp             TTTCEEEEEEETTTCCEEEECTTEEEEEEECS
T ss_pred             CCCceEEeeecccCccEEEecCCeEEEEEecC
Confidence               224567765  668999999999999986

>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=91.98  E-value=0.37  Score=43.75  Aligned_cols=94  Identities=9%  Similarity=0.044  Sum_probs=62.1

Q ss_pred             ceeecCCceEEEeccCcccc--cc-cc-ccccceeeeeeeCCCccccccccC----CCeEEEEEeeEEEEEEEecC----
Q 040805          151 SRVTSQHGRVAFLPKFTQRS--KL-LR-GLEKYRLGILIANPQTFVTPTHLD----ADAVFFVSWGQGTITVIREN----  218 (540)
Q Consensus       151 ~~~~~e~G~i~~l~~f~~~~--~~-L~-Gi~~~rl~~~~l~Pggl~~Ph~~~----A~ei~yV~~G~g~ig~V~~~----  218 (540)
                      .+++-+-|.+..+  |+...  .. .. .....-..+..-++|.++-.|++.    ...+++|++|+....+|+-.    
T Consensus        17 ~~f~D~RG~f~e~--f~~~~~~~~~~~~~~~~~Q~n~S~s~k~vlRGlH~q~~~~~q~Klv~ci~G~i~dv~vD~R~~Sp   94 (202)
T d1oi6a_          17 RVFADDRGLLILP--YQEEAFVEAHGGPLFRVAQTIHSMSKRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSP   94 (202)
T ss_dssp             CCEEETTEEEECS--CBHHHHHHHHSSCCCCCCEEEEEEECTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCT
T ss_pred             cceEcCCCCeEee--hhHHHHHHhcCCCCcceeeehhhcchhheeeeeeecccccchhheeeeccccEEEEEEecccCCC
Confidence            3456667777765  54321  00 00 111222333456899999888752    56999999999999999843    


Q ss_pred             ---CceEEeeC--CCcEEEECCCCeEEEEeCCC
Q 040805          219 ---NRESYNVK--RGDIIRVPSGNTFYVTNTDD  246 (540)
Q Consensus       219 ---~~~~~~l~--~GDv~~iPaG~~h~~~N~g~  246 (540)
                         ....+.|.  .+..++||+|++|.+....+
T Consensus        95 Tfg~~~~~~L~~~~~~~l~IP~G~aHGf~~L~d  127 (202)
T d1oi6a_          95 TFGQWDSVLMDQQDPRAVYLPVGVGHAFVALED  127 (202)
T ss_dssp             TTTCEEEEEECSSSCCEEEECTTCEEEEEECST
T ss_pred             ccceeeeeecccccceeEEeccceeEEEeeccc
Confidence               12345565  55699999999999999864

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.52  E-value=0.49  Score=41.79  Aligned_cols=66  Identities=11%  Similarity=0.086  Sum_probs=50.1

Q ss_pred             EEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEECCCCe
Q 040805          378 YANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIVPAGHP  457 (540)
Q Consensus       378 ~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vVPaG~~  457 (540)
                      .+.=.|+.-.-=|+|+ ..|+.|=++|...+-|+..+...                 .  +..+-.+++||+|.+|+..|
T Consensus        37 mvVGGPN~R~DyH~~~-~eE~FYQlkGdm~Lkv~~~~~~~-----------------g--k~~di~I~EGe~fLLP~~vP   96 (175)
T d1zvfa1          37 MIVGGPNERTDYHINP-TPEWFYQKKGSMLLKVVDETDAE-----------------P--KFIDIIINEGDSYLLPGNVP   96 (175)
T ss_dssp             EEECSSBCCSCEEECS-SCEEEEEEESCEEEEEEECSSSS-----------------C--EEEEEEECTTEEEEECTTCC
T ss_pred             EEEcCCCcccccccCc-chhheeeecCcEEEEEEecCCCC-----------------C--ceeEEeecCCCEEEeCCCCC
Confidence            3444677777778864 56899999999999999875310                 0  44556799999999999999


Q ss_pred             EEEEec
Q 040805          458 VVTVAS  463 (540)
Q Consensus       458 h~~~n~  463 (540)
                      |.=.-.
T Consensus        97 HSPqR~  102 (175)
T d1zvfa1          97 HSPVRF  102 (175)
T ss_dssp             EEEEEC
T ss_pred             CCCCCC
Confidence            986543

>d1znpa1 b.82.1.16 (A:4-143) Hypothetical protein Atu3615 {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein Atu3615
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=90.02  E-value=1.6  Score=37.11  Aligned_cols=107  Identities=13%  Similarity=0.152  Sum_probs=62.7

Q ss_pred             cCCceEEEeccCccccccccccccceeeeeeeCCCcccccccc-CCCeEEEEEeeE-EEEEEEecCCc-eEE----eeCC
Q 040805          155 SQHGRVAFLPKFTQRSKLLRGLEKYRLGILIANPQTFVTPTHL-DADAVFFVSWGQ-GTITVIRENNR-ESY----NVKR  227 (540)
Q Consensus       155 ~e~G~i~~l~~f~~~~~~L~Gi~~~rl~~~~l~Pggl~~Ph~~-~A~ei~yV~~G~-g~ig~V~~~~~-~~~----~l~~  227 (540)
                      .|+|.++.+-+  ....--|  ..+-.-++-|.++.+..-|.. +++|+.+...|. ..+-++.+++. ++.    ++.+
T Consensus        17 PEGG~f~et~r--s~~~~~R--~~~T~IYyLL~~~~~s~~Hrv~~sDEiw~~~~G~pL~l~~~~~~g~~~~~~lG~~~~~   92 (140)
T d1znpa1          17 PEGGFYHQTFR--DKAGGER--GHSTAIYYLLEKGVRSHWHRVTDAVEVWHYYAGAPIALHLSQDGREVQTFTLGPAILE   92 (140)
T ss_dssp             TTSSEEEEEEE--CSSSTTT--CSCEEEEEEEESSCCEEEEEETTSCEEEEEEEESCEEEEEESSSSCCEEEEESSCTTT
T ss_pred             CCCceEEEEEE--CCCCCCC--cceEEEEEEcCCCCCCccccccCCCeEEEEcCCceEEEEEecCCCCEEEEEecCCccc
Confidence            47888877632  1111111  122233345677776433334 588998888887 66777777754 333    4667


Q ss_pred             Cc--EEEECCCCeEEEEeCCCCccEEEEEEeecCCCCC-cccccccC
Q 040805          228 GD--IIRVPSGNTFYVTNTDDDEKLYIVKFIKSINLPG-QYEAFYGA  271 (540)
Q Consensus       228 GD--v~~iPaG~~h~~~N~g~~e~l~~v~i~~~~~~pg-~~~~f~La  271 (540)
                      |+  .++||+|+-+.....|   ...+|...  + .|| .|..|-|+
T Consensus        93 ge~~q~vVp~g~W~aa~~~g---~~sLvsct--V-aPGF~f~dfel~  133 (140)
T d1znpa1          93 GERPQVIVPANCWQSAESLG---DFTLVGCT--V-SPGFAFSSFVMA  133 (140)
T ss_dssp             TEESEEEECTTCEEEEEESS---SEEEEEEE--E-SSCCCGGGEEEC
T ss_pred             CCceeEEECCCeEEeeeECC---CeEEEEeE--e-cCCccCccCEeC
Confidence            87  7899999988877665   24343332  2 255 35566664

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Streptococcus suis [TaxId: 1307]

Probab=89.16  E-value=0.38  Score=43.40  Aligned_cols=61  Identities=16%  Similarity=0.010  Sum_probs=49.3

Q ss_pred             eCCCccccccccCCCeEEEEE-eeEEEEEEEecC------CceEEeeCCCcEEEECCCCeEEEEeCCC
Q 040805          186 ANPQTFVTPTHLDADAVFFVS-WGQGTITVIREN------NRESYNVKRGDIIRVPSGNTFYVTNTDD  246 (540)
Q Consensus       186 l~Pggl~~Ph~~~A~ei~yV~-~G~g~ig~V~~~------~~~~~~l~~GDv~~iPaG~~h~~~N~g~  246 (540)
                      -.+|.++-.|++..+.+++|+ .|....-+|+..      ....+.|..+..++||+|.+|-..-..+
T Consensus        64 S~kgvlRGlH~q~~~k~v~~~~~G~i~~V~vD~R~S~t~g~~~~~~l~~~~~i~IP~G~aHGf~tL~d  131 (194)
T d1nxma_          64 SRKNVLRGLHAEPWDKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSD  131 (194)
T ss_dssp             EETTBEEEEEECSSCEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSS
T ss_pred             eeeeEEEEEEeccchhhhhhccccceeEEEEEeccccccceeeeeeeccCceEEEecceeeEEEeecc
Confidence            478999999988777777776 588888888753      2246789999999999999999999863

>d1e5ra_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline oxidase) {Streptomyces sp. [TaxId: 1931]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Type II Proline 3-hydroxylase (proline oxidase)
domain: Type II Proline 3-hydroxylase (proline oxidase)
species: Streptomyces sp. [TaxId: 1931]

Probab=88.36  E-value=0.22  Score=47.77  Aligned_cols=75  Identities=8%  Similarity=0.034  Sum_probs=47.6

Q ss_pred             cceeeeeeeCCCccccccccCCCeEEEEEee--EEEEEEEecC------CceEEeeCCCcEEEECCCCeEEEEeCCCCcc
Q 040805          178 KYRLGILIANPQTFVTPTHLDADAVFFVSWG--QGTITVIREN------NRESYNVKRGDIIRVPSGNTFYVTNTDDDEK  249 (540)
Q Consensus       178 ~~rl~~~~l~Pggl~~Ph~~~A~ei~yV~~G--~g~ig~V~~~------~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~  249 (540)
                      ..|+.++.+.||+...||. |..+..+-..+  +.-|-++++.      +..++.+++|.+|++-.+.+|++.|.++...
T Consensus        90 ~~r~~rirL~pGg~I~pH~-D~~~~~~~~~~~~RiHIPL~Tn~~~~f~v~~~~~~m~~Ge~w~~D~~~~H~v~N~sd~dR  168 (290)
T d1e5ra_          90 HLQMARSRNLKNAIVIPHR-DFVELDREVDRYFRTFMVLEDSPLAFHSNEDTVIHMRPGEIWFLDAATVHSAVNFSEISR  168 (290)
T ss_dssp             SEEEEEEEEEESEEEEEEC-CC--------CBCCEEEECSCCTTEEEEETTEEECCCTTEEEECCTTSCEEEEESSSSCC
T ss_pred             eeeeeeeeecCCcEecCCc-CCccccccCCceEEEEEEeecCCceEEEECCEEEECCCCeEEEEcCCCeEEEECCCCCce
Confidence            4466667888999988864 22211111111  2333333222      3357899999999999999999999987666


Q ss_pred             EEEE
Q 040805          250 LYIV  253 (540)
Q Consensus       250 l~~v  253 (540)
                      .++|
T Consensus       169 IHLV  172 (290)
T d1e5ra_         169 QSLC  172 (290)
T ss_dssp             CEEE
T ss_pred             EEEE
Confidence            6665

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=87.85  E-value=0.47  Score=45.63  Aligned_cols=41  Identities=17%  Similarity=0.274  Sum_probs=33.9

Q ss_pred             CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEE
Q 040805          198 DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVT  242 (540)
Q Consensus       198 ~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~  242 (540)
                      ++..|++|++|+++++.    ...+..|++||.++|||++..|..
T Consensus       264 ~~~~il~vi~G~~~i~~----~~~~~~l~~G~~~~ipa~~~~~~i  304 (315)
T d1qwra_         264 ESFLICSVIEGSGLLKY----EDKTCPLKKGDHFILPAQMPDFTI  304 (315)
T ss_dssp             SSCEEEEEEEEEEEEEE----TTEEEEEETTCEEEECTTCCCEEE
T ss_pred             CCcEEEEEEeCeEEEEE----CCEEEEEecCcEEEEECCCCCEEE
Confidence            46789999999998764    345788999999999999866654

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=85.96  E-value=4.8  Score=35.23  Aligned_cols=77  Identities=6%  Similarity=-0.044  Sum_probs=57.2

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      ++.+..+...||.-..+|=|+++.-++.|+.|..+.++.......       .      ..-.  ..-...+.+|+|.++
T Consensus        65 ~fel~li~W~pGq~tpiHDH~~~~~~~~vl~G~l~e~~Y~~~~~~-------~------~~l~--~~~~~~~~~g~v~~~  129 (186)
T d3elna1          65 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKK-------S------NEMI--KKSERTLRENQCAYI  129 (186)
T ss_dssp             TCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSS-------C------CCCC--EEEEEEECTTCEEEE
T ss_pred             CeEEEEEEccCCCcCCCccCCCCcEEEEEcccceEEEEeecCCCC-------c------cccc--ccceEEecCCCEEEe
Confidence            467778899999999999999999999999999999988643210       0      0000  122357899999988


Q ss_pred             CCCC-eEEEEecC
Q 040805          453 PAGH-PVVTVASQ  464 (540)
Q Consensus       453 PaG~-~h~~~n~~  464 (540)
                      .... .|-+.|.+
T Consensus       130 ~~~~~iH~v~N~~  142 (186)
T d3elna1         130 NDSIGLHRVENVS  142 (186)
T ss_dssp             CTTTCEEEEECCC
T ss_pred             CCCCCcceeecCC
Confidence            7654 78888864

>d1znpa1 b.82.1.16 (A:4-143) Hypothetical protein Atu3615 {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein Atu3615
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=84.98  E-value=4.3  Score=34.30  Aligned_cols=96  Identities=15%  Similarity=0.072  Sum_probs=60.1

Q ss_pred             CCceEEEecCCCCCCCccccceEEEEEEcCCCccccccc--CCCcEEEEEEece-EEEEEEcCCCCCCcccccccCCCcc
Q 040805          354 NFGELFEADSNDFRPLEDLDITVSYANISKGAMAAPFYN--SRSTKVAVVVAGD-GYIEIACPHVSRSSSERRHQGSSTR  430 (540)
Q Consensus       354 ~~G~~~~~~~~~~p~L~~l~isv~~~~L~pggm~~PH~h--~~A~ei~yV~~G~-g~v~vv~p~~~~~~~~~~~~~~~~~  430 (540)
                      ++|.++++...+...-+ ..+++.+.-|+++...  |||  .+++||-+...|. ..+-++.+++..             
T Consensus        18 EGG~f~et~rs~~~~~R-~~~T~IYyLL~~~~~s--~~Hrv~~sDEiw~~~~G~pL~l~~~~~~g~~-------------   81 (140)
T d1znpa1          18 EGGFYHQTFRDKAGGER-GHSTAIYYLLEKGVRS--HWHRVTDAVEVWHYYAGAPIALHLSQDGREV-------------   81 (140)
T ss_dssp             TSSEEEEEEECSSSTTT-CSCEEEEEEEESSCCE--EEEEETTSCEEEEEEEESCEEEEEESSSSCC-------------
T ss_pred             CCceEEEEEECCCCCCC-cceEEEEEEcCCCCCC--ccccccCCCeEEEEcCCceEEEEEecCCCCE-------------
Confidence            55555555433322222 2366667778898875  565  3588888888886 778888887631             


Q ss_pred             ccCCccceEEeeeeCCCc--EEEECCCCeEEEEecCCCCEEEEE
Q 040805          431 EEGSATYHKVSSRIRTDS--AYIVPAGHPVVTVASQNNNLEVVC  472 (540)
Q Consensus       431 ~~~~~~~~~~~~~l~~GD--V~vVPaG~~h~~~n~~~e~l~~v~  472 (540)
                           .-.++-.++..|+  .+|||+|+.......+  ...+|+
T Consensus        82 -----~~~~lG~~~~~ge~~q~vVp~g~W~aa~~~g--~~sLvs  118 (140)
T d1znpa1          82 -----QTFTLGPAILEGERPQVIVPANCWQSAESLG--DFTLVG  118 (140)
T ss_dssp             -----EEEEESSCTTTTEESEEEECTTCEEEEEESS--SEEEEE
T ss_pred             -----EEEEecCCcccCCceeEEECCCeEEeeeECC--CeEEEE
Confidence                 0023334567777  7899999988765543  455554

>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: VPA0057-like
domain: Uncharacterized protein VPA0057
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=84.10  E-value=3.3  Score=32.61  Aligned_cols=64  Identities=13%  Similarity=0.109  Sum_probs=49.2

Q ss_pred             eeCCCccccccc-cCCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEeCCCCccEEEEEEe
Q 040805          185 IANPQTFVTPTH-LDADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTNTDDDEKLYIVKFI  256 (540)
Q Consensus       185 ~l~Pggl~~Ph~-~~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N~g~~e~l~~v~i~  256 (540)
                      .|.||..   ++ .++.|+.=|+.|...+.+  |+..+-..+.+|+-|-||++..+-+.-.   +...++|.+
T Consensus        28 Vm~pGeY---~F~T~~~E~MeivsG~l~V~l--pg~~ew~~~~~G~sF~Vpans~F~ikv~---~~~~Y~C~y   92 (93)
T d2oyza1          28 VMLPGEY---TFGTQAPERMTVVKGALVVKR--VGEADWTTYSSGESFDVEGNSSFELQVK---DATAYLCEY   92 (93)
T ss_dssp             EECSEEE---EEEESSCEEEEEEESEEEEEE--TTCSSCEEEETTCEEEECSSEEEEEEES---SCEEEEEEC
T ss_pred             EEeccEE---EEcCCCCEEEEEEeeEEEEEC--CCCcccEEeCCCCeEEECCCCEEEEEEC---cceeeEEEe
Confidence            4556653   23 479999999999987776  7666667899999999999999988774   356677654

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.85  E-value=1.3  Score=42.09  Aligned_cols=41  Identities=15%  Similarity=0.293  Sum_probs=32.8

Q ss_pred             CCCeEEEEEeeEEEEEEEecCCceEEeeCCCcEEEECCCCeEEEEe
Q 040805          198 DADAVFFVSWGQGTITVIRENNRESYNVKRGDIIRVPSGNTFYVTN  243 (540)
Q Consensus       198 ~A~ei~yV~~G~g~ig~V~~~~~~~~~l~~GDv~~iPaG~~h~~~N  243 (540)
                      +...|++|++|++++.     ...+..|++||.++|||.+..|..-
T Consensus       246 ~~~~il~~~~G~~~i~-----~~~~~~l~~G~s~~iPA~~~~~~i~  286 (299)
T d1zx5a1         246 GVMNILYAAEGYFILR-----GKETADLHRGYSCLVPASTDSFTVE  286 (299)
T ss_dssp             SBCEEEEEEESCEEEE-----SSSEEEECTTCEEEECTTCCEEEEE
T ss_pred             CceEEEEEeccEEEEe-----CCCEEEEcCCcEEEEecCCccEEEE
Confidence            4568999999998653     2346889999999999998777654

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

Probab=81.10  E-value=3.8  Score=36.18  Aligned_cols=86  Identities=9%  Similarity=0.052  Sum_probs=57.3

Q ss_pred             cceEEEEEEcCCCcccccccCCCcEEEEEEeceEEEEEEcCCCCCCcccccccCCCccccCCccceEEeeeeCCCcEEEE
Q 040805          373 DITVSYANISKGAMAAPFYNSRSTKVAVVVAGDGYIEIACPHVSRSSSERRHQGSSTREEGSATYHKVSSRIRTDSAYIV  452 (540)
Q Consensus       373 ~isv~~~~L~pggm~~PH~h~~A~ei~yV~~G~g~v~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vV  452 (540)
                      ++.+..+...||.-..||=|.. ..++.|++|.-..++..-....       .   ..+      ..-...|.+||+.+|
T Consensus        67 ~f~i~~i~W~pG~~tpiHdH~~-w~~~~vl~G~l~e~~y~~~~~~-------~---~~~------~~~~~~l~~G~v~~~  129 (192)
T d2gm6a1          67 RFSIVSFVWGPGQRTPIHDHTV-WGLIGMLRGAEYSQPFVLDGSG-------R---PVL------HGEPTRLEPGHVEAV  129 (192)
T ss_dssp             SCEEEEEEECTTCBCCSBCCSS-CEEEEEEESCEEEEEEEECTTS-------C---EEE------CSCCEEECTTCEEEE
T ss_pred             CEEEEEEecCCCCCCCCCCCCC-ceEEEEEcCeEEEEEeeeCCCC-------C---ccc------ccceEEecCCCEEEE
Confidence            3678888999999999999965 4777899999988877643210       0   000      011235899999877


Q ss_pred             --CCCCeEEEEec-CCCCEEEEEEEecC
Q 040805          453 --PAGHPVVTVAS-QNNNLEVVCFEINA  477 (540)
Q Consensus       453 --PaG~~h~~~n~-~~e~l~~v~F~~~a  477 (540)
                        +.|..|.+.|. +++.  .|++.+..
T Consensus       130 ~~~~~~IH~v~N~~~~~~--avSLHvYg  155 (192)
T d2gm6a1         130 SPTVGDIHRVHNAYDDRV--SISIHVYG  155 (192)
T ss_dssp             BTTTBCCEEEEESCSSSC--EEEEEEES
T ss_pred             CCCCCceeEEecCCCCcc--EEEEEECC
Confidence              34678999875 4432  24554444

>d1xe7a_ b.82.1.16 (A:) Hypothetical protein YML079W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein YML079W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.26  E-value=13  Score=32.84  Aligned_cols=60  Identities=15%  Similarity=0.258  Sum_probs=42.5

Q ss_pred             eeeeCCCccccccc-cCCCeEEEEEeeEEEEEEEecCCceE-E----eeCCCc--EEEECCCCeEEEE
Q 040805          183 ILIANPQTFVTPTH-LDADAVFFVSWGQGTITVIRENNRES-Y----NVKRGD--IIRVPSGNTFYVT  242 (540)
Q Consensus       183 ~~~l~Pggl~~Ph~-~~A~ei~yV~~G~g~ig~V~~~~~~~-~----~l~~GD--v~~iPaG~~h~~~  242 (540)
                      ++-|.+.+-+..+| .++++|.|...|...+-++.+++... .    ++..|+  .++||+|+-+.-.
T Consensus        75 YfLLt~~~~~S~~Hr~~sde~w~~~~G~~l~~~i~~dG~~~~~~LG~d~~~Ge~~Q~vVp~G~W~aa~  142 (194)
T d1xe7a_          75 YYLLTPDSPIGKFHKNINRIIHILQRGKGQYVLVYPDGQVKSFKVGFDYKNGEVSQWVVPGGVFKASF  142 (194)
T ss_dssp             EEEEBTTBCEEEEEEESSCEEEEEEEECEEEEEECTTSCEEEEEESSCGGGTCBSEEEECTTCEEEEE
T ss_pred             EEEEccCCCccceEEcCCcEEEEEecCCcEEEEEccCCCeEEEEeccCcccCceeEEEecCCEEEEee
Confidence            34566765444444 58999999999999988888876643 2    566777  5789999855544