Citrus Sinensis ID: 040815

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
Protein Sequence
MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGETPTNEDHTEGSSESLFSGASDRKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGTQQKATRRRGSRK
Secondary Structure (PSIPRED)
cEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccccEEEcccccccccccHHHHccccccEEEEEcccEEEccccccccEEEcccccccccccHHHHccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEHHHHHHHHHHHccccHHHHHHccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEcccccccccccHHHHccccccEEEcccccccccccHHHccccccEEEEEcccccccccccccccccccccEEEEcccccccccccHHHHHccHHHHHHEcccccccccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccHHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEcccccccccccccccccccccccccccccccccEEEEEEEcHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
meakrshnlfegriprslincskleflglgnyqisdtfpswlgtlpklnvLILRSNIfygvieeprtgcgfsklriidlsnnrfsgnlpsksfLCWNAMKIVNARRMMTYNKIPDILAGIilsnnrfvgaipasiANLKGLQVLNLQYNnlqglipsslgnltnlesldlsnkkfagripqqLVELTFLEFfnvsdnyltgpipqgkqfatfdntsfdgnsglcgkplskgcesgetptnedhtegsseslfsgasdRKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGtqqkatrrrgsrk
Flexible Loop (DISEMBL)
meakrshnlfegriprsliNCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSnnrfsgnlpsksfLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGetptnedhtegssESLFSGASDRKIILTGYAGGLVAGLVLGFNFSTGIIGWIleklgtqqkatrrrgsrk
Low Complexity Region (SEG)
MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGlqvlnlqynnlqglIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGETPTNEDHTEGSSESLFSGASDRKIILTGYagglvaglvlgFNFSTGIIGWILEKLGTQQKATRRRGSRK
Disordered region (IsUnstruct)
*********FEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSF****************************************RKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKL**************
Disordered Region (DISOPRED)
MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPL**************************ASDRKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGTQQK*********
Disordered Region (DISEMBL)
********LFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLS**********************FSGASDRKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLG*************
Disordered Region (DISPRO)
MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGC*********************GASDRKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGTQQK*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGETPTNEDHTEGSSESLFSGASDRKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGTQQKATRRRGSRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	305	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.931	0.335	0.386	7e-50
Q9C7S5	1095	Tyrosine-sulfated glycope	no	no	0.708	0.197	0.367	5e-32
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.731	0.305	0.386	8e-32
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.796	0.238	0.376	3e-30
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.701	0.212	0.392	4e-30
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.737	0.217	0.368	9e-30
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.721	0.176	0.357	1e-27
O22938	890	Leucine-rich repeat recep	no	no	0.740	0.253	0.355	1e-25
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.734	0.197	0.339	7e-25
Q9LHP4	1141	Receptor-like protein kin	no	no	0.701	0.187	0.331	2e-24

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  197 bits (502), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 124/321 (38%), Positives = 168/321 (52%), Gaps = 37/321 (11%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           SHN  EG+ P+SLINC  LE + + + +I D FPSWL +LP L+VL LRSN FYG +   
Sbjct: 524 SHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHR 583

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCW-------------------------NAMK 100
               GF  LRIID+S+N FSG LP   F  W                         + M+
Sbjct: 584 HASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYADSYYHEME 643

Query: 101 IVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG 160
           +VN    M++ +I      I  S N+  G IP S+  LK L+VLNL  N    +IP  L 
Sbjct: 644 MVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLA 703

Query: 161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGN 220
           NLT LE+LD+S  K +G+IPQ L  L+FL + N S N L GP+P+G QF     +SF  N
Sbjct: 704 NLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDN 763

Query: 221 SGLCGKPLSKGCES--GETPTN---EDHTEGSSESLFSGASDRKIILTGYAGGLVAGLVL 275
            GL G  L   C       PT+   ED +E + E++F+  +        Y  G++ GLV+
Sbjct: 764 PGLYG--LEDICRDTGALNPTSQLPEDLSE-AEENMFNWVAAA----IAYGPGVLCGLVI 816

Query: 276 GFNFSTGIIGWILEKLGTQQK 296
           G  +++    W  EK G +Q 
Sbjct: 817 GHFYTSHNHEWFTEKFGRKQH 837

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1

 Score =  138 bits (348), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 87/237 (36%), Positives = 117/237 (49%), Gaps = 21/237 (8%)

Query: 24  LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR 83
           L+  G+G  +++   P+WL  L ++ V+ L  N F G I  P        L  +DLS+N 
Sbjct: 473 LQIFGIGACRLTGEIPAWLIKLQRVEVMDLSMNRFVGTI--PGWLGTLPDLFYLDLSDNF 530

Query: 84  FSGNLPSKSFLCWNAMK----------------IVNARRMMT---YNKIPDILAGIILSN 124
            +G LP + F     M                  VN   + T   YN++  +   I +  
Sbjct: 531 LTGELPKELFQLRALMSQKAYDATERNYLELPVFVNPNNVTTNQQYNQLSSLPPTIYIKR 590

Query: 125 NRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLV 184
           N   G IP  +  LK L +L L  NN  G IP  L NLTNLE LDLSN   +GRIP  L 
Sbjct: 591 NNLTGTIPVEVGQLKVLHILELLGNNFSGSIPDELSNLTNLERLDLSNNNLSGRIPWSLT 650

Query: 185 ELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGETPTNE 241
            L FL +FNV++N L+GPIP G QF TF   +F+GN  LCG  L   C+  +  T +
Sbjct: 651 GLHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNPLLCGGVLLTSCDPTQHSTTK 707

Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score =  137 bits (346), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 90/233 (38%), Positives = 114/233 (48%), Gaps = 10/233 (4%)

Query: 10  FEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGC 69
             G IP  LIN +K+E + L   +   + P WLGTLP L  L L  N+  G  E P+   
Sbjct: 481 LRGEIPAWLINLNKVEVMDLSMNRFVGSIPGWLGTLPDLFYLDLSDNLLTG--ELPKELF 538

Query: 70  GFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVG 129
               L    ++ N +   L    FL  N     N      YNK+      I +  N   G
Sbjct: 539 QLRALMSQKITENNY---LELPIFLNPN-----NVTTNQQYNKLYSFPPTIYIRRNNLTG 590

Query: 130 AIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFL 189
           +IP  +  LK L +L L  NNL G IP  L NLTNLE LDLSN   +G IP  L  L FL
Sbjct: 591 SIPVEVGQLKVLHILELLGNNLSGSIPDELSNLTNLERLDLSNNNLSGSIPWSLTNLNFL 650

Query: 190 EFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGETPTNED 242
            +FNV++N L GPIP   QF TF   +F+GN  LCG  L   C+      N++
Sbjct: 651 SYFNVANNSLEGPIPSEGQFDTFPKANFEGNPLLCGGVLLTSCKPTRAKENDE 703

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  132 bits (333), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/260 (37%), Positives = 135/260 (51%), Gaps = 17/260 (6%)

Query: 10  FEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGC 69
             G +P+ L N   L+ L L   Q+S T P WLG+L  L  L L +N F G I    T  
Sbjct: 437 LRGTVPQWLSNSPSLQLLDLSWNQLSGTIPPWLGSLNSLFYLDLSNNTFIGEIPHSLTS- 495

Query: 70  GFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVG 129
                 +  L +   +   PS  F  +   K  NA  +  YN+       I LS N   G
Sbjct: 496 ------LQSLVSKENAVEEPSPDFPFFKK-KNTNAGGLQ-YNQPSSFPPMIDLSYNSLNG 547

Query: 130 AIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFL 189
           +I     +L+ L VLNL+ NNL G IP++L  +T+LE LDLS+   +G IP  LV+L+FL
Sbjct: 548 SIWPEFGDLRQLHVLNLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGNIPPSLVKLSFL 607

Query: 190 EFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGETPTNEDHTEGSSE 249
             F+V+ N L+GPIP G QF TF N+SF+GN GLCG+  S    + ++P       GS  
Sbjct: 608 STFSVAYNKLSGPIPTGVQFQTFPNSSFEGNQGLCGEHASPCHITDQSP------HGS-- 659

Query: 250 SLFSGASDRKIILTGYAGGL 269
           ++ S  + RKI+      GL
Sbjct: 660 AVKSKKNIRKIVAVAVGTGL 679

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score =  132 bits (331), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/227 (39%), Positives = 126/227 (55%), Gaps = 13/227 (5%)

Query: 12  GRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGF 71
           G +PR L + ++L+ L L   +++   PSW+G    L  L L +N F G I +  T    
Sbjct: 429 GSMPRWLSSSNELQLLDLSWNRLTGAIPSWIGDFKALFYLDLSNNSFTGEIPKSLT---- 484

Query: 72  SKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAI 131
              ++  L++   S N PS  F  +  MK   + R + YN+I      I L +N   G I
Sbjct: 485 ---KLESLTSRNISVNEPSPDFPFF--MKRNESARALQYNQIFGFPPTIELGHNNLSGPI 539

Query: 132 PASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEF 191
                NLK L V +L++N L G IPSSL  +T+LE+LDLSN + +G IP  L +L+FL  
Sbjct: 540 WEEFGNLKKLHVFDLKWNALSGSIPSSLSGMTSLEALDLSNNRLSGSIPVSLQQLSFLSK 599

Query: 192 FNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGK---PLSKGCESG 235
           F+V+ N L+G IP G QF TF N+SF+ N  LCG+   P S+G ES 
Sbjct: 600 FSVAYNNLSGVIPSGGQFQTFPNSSFESNH-LCGEHRFPCSEGTESA 645

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score =  130 bits (328), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 91/247 (36%), Positives = 114/247 (46%), Gaps = 22/247 (8%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S N     IP ++     L  L LGN  +    PSWL    KL VL L  N FYG I  P
Sbjct: 410 SKNFIGEEIPNNVTGFDNLAILALGNCGLRGQIPSWLLNCKKLEVLDLSWNHFYGTI--P 467

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMT---------------- 109
                   L  ID SNN  +G +P       N +++      MT                
Sbjct: 468 HWIGKMESLFYIDFSNNTLTGAIPVAITELKNLIRLNGTASQMTDSSGIPLYVKRNKSSN 527

Query: 110 ---YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLE 166
              YN++      I L+NNR  G I   I  LK L +L+L  NN  G IP S+  L NLE
Sbjct: 528 GLPYNQVSRFPPSIYLNNNRLNGTILPEIGRLKELHMLDLSRNNFTGTIPDSISGLDNLE 587

Query: 167 SLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGK 226
            LDLS     G IP     LTFL  F+V+ N LTG IP G QF +F ++SF+GN GLC +
Sbjct: 588 VLDLSYNHLYGSIPLSFQSLTFLSRFSVAYNRLTGAIPSGGQFYSFPHSSFEGNLGLC-R 646

Query: 227 PLSKGCE 233
            +   C+
Sbjct: 647 AIDSPCD 653

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/232 (35%), Positives = 120/232 (51%), Gaps = 12/232 (5%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S N   G IP  L+ C KL  + L N  +S   P WLG L +L  L L SN F   +   
Sbjct: 631 SSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTE 690

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGII---- 121
              C  +KL ++ L  N  +G++P +      A+ ++N  +      +P  +  +     
Sbjct: 691 LFNC--TKLLVLSLDGNSLNGSIP-QEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYE 747

Query: 122 --LSNNRFVGAIPASIANLKGLQ-VLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGR 178
             LS N   G IP  I  L+ LQ  L+L YNN  G IPS++G L+ LE+LDLS+ +  G 
Sbjct: 748 LRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGE 807

Query: 179 IPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSK 230
           +P  + ++  L + NVS N L G +   KQF+ +   SF GN+GLCG PLS+
Sbjct: 808 VPGSVGDMKSLGYLNVSFNNLGGKLK--KQFSRWPADSFLGNTGLCGSPLSR 857

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22938|Y2182_ARATH Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/236 (35%), Positives = 109/236 (46%), Gaps = 10/236 (4%)

Query: 8   NLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRT 67
           N   G I      CS L  L L     + T P+ LG L  L  LIL  N  +G  E P++
Sbjct: 288 NNLSGEIVAEFSKCSNLTLLNLAANGFAGTIPTELGQLINLQELILSGNSLFG--EIPKS 345

Query: 68  GCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGII------ 121
             G   L  +DLSNNR +G +P K       ++ +   +      IP  +   +      
Sbjct: 346 FLGSGNLNKLDLSNNRLNGTIP-KELCSMPRLQYLLLDQNSIRGDIPHEIGNCVKLLQLQ 404

Query: 122 LSNNRFVGAIPASIANLKGLQV-LNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIP 180
           L  N   G IP  I  ++ LQ+ LNL +N+L G +P  LG L  L SLD+SN    G IP
Sbjct: 405 LGRNYLTGTIPPEIGRMRNLQIALNLSFNHLHGSLPPELGKLDKLVSLDVSNNLLTGSIP 464

Query: 181 QQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGE 236
             L  +  L   N S+N L GP+P    F    N+SF GN  LCG PLS  C   E
Sbjct: 465 PLLKGMMSLIEVNFSNNLLNGPVPVFVPFQKSPNSSFLGNKELCGAPLSSSCGYSE 520

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  114 bits (286), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/262 (33%), Positives = 126/262 (48%), Gaps = 38/262 (14%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S N F G IP S+ N  KL  L L    +S   P  L  LP + V+ L+ N F GV+ E 
Sbjct: 484 SGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPE- 542

Query: 66  RTGCGFSKL---RIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI-----L 117
               GFS L   R ++LS+N FSG +P         + +  +   ++ +  P+I     L
Sbjct: 543 ----GFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSAL 598

Query: 118 AGIILSNNRFVGAIPASIANLKGLQVLNL------------------------QYNNLQG 153
             + L +NR +G IPA ++ L  L+VL+L                         +N+L G
Sbjct: 599 EVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSG 658

Query: 154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTF-LEFFNVSDNYLTGPIPQGKQFATF 212
           +IP S   L+NL  +DLS     G IP  L  ++  L +FNVS N L G IP        
Sbjct: 659 VIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRIN 718

Query: 213 DNTSFDGNSGLCGKPLSKGCES 234
           + + F GN+ LCGKPL++ CES
Sbjct: 719 NTSEFSGNTELCGKPLNRRCES 740

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 122/247 (49%), Gaps = 33/247 (13%)

Query: 8   NLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRT 67
           N   G IP+ + NCS L  L LG  +I+   PS +G+L K+N L   SN  +G + +   
Sbjct: 452 NSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIG 511

Query: 68  GCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILA------GII 121
            C  S+L++IDLSNN   G+LP+      + +++++        KIP  L        +I
Sbjct: 512 SC--SELQMIDLSNNSLEGSLPNP-VSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLI 568

Query: 122 LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLE-SLDLSNKKFAGRIP 180
           LS N F G+IP S+    GLQ+L+L  N L G IPS LG++ NLE +L+LS+ +  G+IP
Sbjct: 569 LSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIP 628

Query: 181 QQLVELTFLEFFNVSDNYL-----------------------TGPIPQGKQFATFDNTSF 217
            ++  L  L   ++S N L                       +G +P  K F        
Sbjct: 629 SKIASLNKLSILDLSHNMLEGDLAPLANIENLVSLNISYNSFSGYLPDNKLFRQLSPQDL 688

Query: 218 DGNSGLC 224
           +GN  LC
Sbjct: 689 EGNKKLC 695

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
147782974	1719	hypothetical protein VITISV_036826 [Viti	0.967	0.171	0.490	4e-75
359485824	973	PREDICTED: receptor-like protein 12-like	0.957	0.300	0.487	4e-75
359485822	993	PREDICTED: receptor-like protein 12-like	0.963	0.296	0.5	3e-74
225447578	1946	PREDICTED: uncharacterized protein LOC10	0.954	0.149	0.476	4e-73
359490156	886	PREDICTED: receptor-like protein 12-like	0.967	0.332	0.477	2e-72
147794486	1924	hypothetical protein VITISV_000631 [Viti	0.954	0.151	0.470	4e-72
255548694	984	serine/threonine-protein kinase bri1, pu	0.957	0.296	0.465	1e-69
224140509	961	predicted protein [Populus trichocarpa]	0.908	0.288	0.479	4e-67
147766212	925	hypothetical protein VITISV_018438 [Viti	0.885	0.291	0.498	5e-67
224140517	979	predicted protein [Populus trichocarpa]	0.914	0.284	0.467	6e-67

>gi|147782974|emb|CAN66148.1| hypothetical protein VITISV_036826 [Vitis vinifera]

 Score =  287 bits (735), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 161/328 (49%), Positives = 196/328 (59%), Gaps = 33/328 (10%)

Query: 6    SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
            S NL EG +PRSL NC+ LE L LGN QISDTFP WLG LP+L VLILRSN F+G I +P
Sbjct: 1391 SQNLLEGPVPRSLTNCTVLESLNLGNNQISDTFPFWLGALPELQVLILRSNRFHGAIGKP 1450

Query: 66   RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRM------------------ 107
            RT   F KLRIIDLS N FSGNLPS  FL W AMK ++A                     
Sbjct: 1451 RTNFEFPKLRIIDLSYNSFSGNLPSVYFLDWIAMKSIDADNFTYMQASSGFSTQTYKLYD 1510

Query: 108  -------MT-------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG 153
                   MT       Y KIP I   I  S+N+F G IP SI  LKGL +LN   N+L G
Sbjct: 1511 NYTYSMTMTNKGMERVYEKIPGIFRAIDFSSNKFKGEIPTSIGTLKGLHLLNFSXNSLTG 1570

Query: 154  LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFD 213
             IP+SL NLT LE+LDLS     G IPQQL E+TFL FFNVS N LTGPIPQ KQF TF 
Sbjct: 1571 RIPTSLRNLTELEALDLSQNNLLGEIPQQLTEMTFLGFFNVSHNNLTGPIPQXKQFDTFQ 1630

Query: 214  NTSFDGNSGLCGKPLSKGCESGETPTNEDHTEGSSESLFSGAS-DRKIILTGYAGGLVAG 272
            + S++GN GLCG PL + C + +  + +  T    + L   +  DRK++L GY   LV G
Sbjct: 1631 SDSYEGNPGLCGNPLIRKCGNPKQASPQPSTSEQGQDLEPASXFDRKVVLMGYXSXLVFG 1690

Query: 273  LVLGFNFSTGIIGWILEKLGTQQKATRR 300
            +++G+ F+T    W ++  G +Q+   R
Sbjct: 1691 VIIGYIFTTRKHEWFVKTFGRRQQQQER 1718

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  287 bits (735), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 162/332 (48%), Positives = 200/332 (60%), Gaps = 40/332 (12%)

Query: 8   NLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRT 67
           N F+G+IPRSL+NC+ LE L LGN +I+D FP WLG LP+L VLILRSN F+G I    T
Sbjct: 643 NQFQGQIPRSLVNCTMLEHLVLGNNKINDIFPFWLGALPQLQVLILRSNRFHGAIGSWHT 702

Query: 68  GCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMK---IVNARRMMT--------------- 109
              F KLRIIDLS+N F G+LPS+ F  W+AMK   I +  R M                
Sbjct: 703 NFRFPKLRIIDLSDNEFIGDLPSEYFQNWDAMKLTDIASGLRYMQISPMIDLKNNVMITG 762

Query: 110 ---------------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGL 154
                          Y +I D    I  S N F G IP SI +LKG+ +LNL  N+L G 
Sbjct: 763 YMYSMTMTNKGMQRFYERILDTFMAIDFSGNNFKGQIPTSIGSLKGIHLLNLGGNDLTGH 822

Query: 155 IPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 214
           IPSSLGNLT LESLDLS  K +G IP QL  LTFLEFFNVS N+LTG IPQGKQFATF+N
Sbjct: 823 IPSSLGNLTQLESLDLSQNKLSGEIPWQLTRLTFLEFFNVSHNHLTGHIPQGKQFATFEN 882

Query: 215 TSFDGNSGLCGKPLSKGCESGET--PTNEDHTEGSSESLFSGASDRKIILTGYAGGLVAG 272
            SFDGN GLCG PLS+ C S E   PT+    +GS+        D KI+L GY  GL+ G
Sbjct: 883 ASFDGNLGLCGSPLSRECGSSEALPPTSSSSKQGSTTKF-----DWKIVLMGYGSGLLIG 937

Query: 273 LVLGFNFSTGIIGWILEKLGTQQKATRRRGSR 304
           + +G+  ++    W ++ +G +Q+   R+  R
Sbjct: 938 VSIGYCLTSWKHEWFVKTIGKRQRKWTRKEGR 969

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485822|ref|XP_003633342.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 168/336 (50%), Positives = 201/336 (59%), Gaps = 42/336 (12%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S N  +G+IP+SL +C  LE L LGN  I+D FP WLG+LP+L VLILR N F+G I  P
Sbjct: 662 SENQLQGQIPKSLASCMMLEELVLGNNLINDIFPFWLGSLPRLQVLILRFNRFHGAIGSP 721

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRM------------------ 107
           +T   FSKLRIIDLS N F+GNLPS+    W+AM+IV+A  +                  
Sbjct: 722 KTNFEFSKLRIIDLSYNGFTGNLPSEYLKNWDAMRIVDAENLTYIQVDEEFEVPQYSWEE 781

Query: 108 ------------MT--YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG 153
                       MT  Y  IPDIL  I LS+NRF G IP SI N  GL+ LNL  N L G
Sbjct: 782 PYPFSTTMTNKGMTREYELIPDILIAIDLSSNRFHGEIPESIGNPNGLRWLNLSNNALIG 841

Query: 154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFD 213
            IP+SL NLT LE+LDLS  K +  IPQQLV+LTFL FFNVS N+LTGPIPQGKQFATF 
Sbjct: 842 AIPTSLANLTLLEALDLSQNKLSREIPQQLVQLTFLAFFNVSHNHLTGPIPQGKQFATFS 901

Query: 214 NTSFDGNSGLCGKPLSKGCESGET--PTNEDHTEGSSESLFSGASDRKIILTGYAGGLVA 271
             SFDGN GLCG PLS+ C S E   PT     +GS+        D K +L G   GLV 
Sbjct: 902 RASFDGNPGLCGSPLSRACGSSEQSPPTPSSSKQGSTSEF-----DWKFVLMGCGSGLVI 956

Query: 272 GLVLGFNFSTGIIGWILEKLGTQQ-KATR--RRGSR 304
           G+ +G+  ++    W ++  G Q  K TR  RRG R
Sbjct: 957 GVSIGYCLTSWKHEWFVKTFGKQHTKWTRKERRGHR 992

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447578|ref|XP_002270154.1| PREDICTED: uncharacterized protein LOC100264911 [Vitis vinifera]

 Score =  281 bits (718), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 155/325 (47%), Positives = 192/325 (59%), Gaps = 34/325 (10%)

Query: 6    SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
            S+N  EG+IPRSL NC +LE L LGN QI+DTFP WLG+ P+L +LILR N F+G IE P
Sbjct: 1620 SYNQLEGQIPRSLGNCKELEILNLGNNQINDTFPFWLGSFPELQLLILRHNRFHGAIENP 1679

Query: 66   RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIV----------------------- 102
            R    F  L IIDLS N F+GNLP+  FL W AM  V                       
Sbjct: 1680 RANFEFPTLCIIDLSYNNFAGNLPAGYFLTWVAMSRVDEENFSYMQSMTGFVLIRTYRLY 1739

Query: 103  ---NARRMMT-------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQ 152
               N    MT       Y KIP     I LS+N+F+G IP SI  L+GL +LN+  N+L 
Sbjct: 1740 ENYNYSMTMTNKGMERVYPKIPRSFKAIDLSSNKFIGEIPKSIGKLRGLHLLNISSNSLT 1799

Query: 153  GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATF 212
            G IPS LGNL  LE+LDLS    +G IPQQL  +TFLEFFNVS N+L GPIPQGKQF TF
Sbjct: 1800 GHIPSFLGNLAQLEALDLSQNNLSGEIPQQLKGMTFLEFFNVSHNHLMGPIPQGKQFNTF 1859

Query: 213  DNTSFDGNSGLCGKPLSKGCESGETPTNEDHTEGSSESLFSGAS-DRKIILTGYAGGLVA 271
             N S++GN GLCG PLSK CE+ ++      T+     L SG   +  I+L GY  GLV 
Sbjct: 1860 QNDSYEGNPGLCGNPLSKECENSKSTAPPPPTDKHGGDLESGRKVELMIVLMGYGSGLVV 1919

Query: 272  GLVLGFNFSTGIIGWILEKLGTQQK 296
            G+ +G+  +T    W ++  G +Q+
Sbjct: 1920 GMAIGYTLTTRKHEWFVKTFGKRQR 1944

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 158/331 (47%), Positives = 190/331 (57%), Gaps = 36/331 (10%)

Query: 8   NLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRT 67
           N F+G+IPRS  NC  LE L LGN QI D FP WLG LP+L VLILRSN F+G I    +
Sbjct: 557 NQFQGQIPRSFANCMMLEHLVLGNNQIDDIFPFWLGALPQLQVLILRSNRFHGAIGSWHS 616

Query: 68  GCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMK---IVNARRMMT--------------- 109
              F KLRI+DLS+N+F G+LPS+ F  W+AMK   I N  R M                
Sbjct: 617 NFRFPKLRIVDLSDNKFIGDLPSEYFQNWDAMKLTDIANDLRYMQARPKFQIPGYGWTAH 676

Query: 110 ---------------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGL 154
                          Y KIPD+   I  S N F G IP SI NL G  +LNL  NNL G 
Sbjct: 677 YMYSMTMTNRGMQRFYEKIPDVFIAIDFSGNNFKGQIPTSIGNLNGFHLLNLGSNNLTGH 736

Query: 155 IPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 214
           IPSSLG+LT LESLDLS  + +G IP QL  +TFL FFNVS N+LTGPIPQG QF TF N
Sbjct: 737 IPSSLGDLTQLESLDLSQNQLSGEIPLQLTRITFLAFFNVSHNHLTGPIPQGNQFTTFPN 796

Query: 215 TSFDGNSGLCGKPLSKGCESGETPTNEDHTEGSSESLFSGASDRKIILTGYAGGLVAGLV 274
            SFDGN GLCG PLS+ C S E       T  SS+   +   D K +L GY  GLV G+ 
Sbjct: 797 ASFDGNLGLCGSPLSRACGSSEA---SPPTSSSSKQGSTSEFDWKFVLMGYGSGLVIGVS 853

Query: 275 LGFNFSTGIIGWILEKLGTQQKATRRRGSRK 305
           +G+  ++    W ++  G +Q+   R+  R 
Sbjct: 854 IGYYLTSWKHEWFVKTFGKRQRKWTRKERRH 884

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794486|emb|CAN71611.1| hypothetical protein VITISV_000631 [Vitis vinifera]

 Score =  277 bits (709), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 153/325 (47%), Positives = 191/325 (58%), Gaps = 34/325 (10%)

Query: 6    SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
            S+N  EG+IPRSL NC + E L LGN QI+DTFP WLG+LP+L +LILR N F+G IE P
Sbjct: 1598 SYNQLEGQIPRSLXNCKEXEILNLGNNQINDTFPFWLGSLPELQLLILRHNRFHGAIESP 1657

Query: 66   RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRM-----MT----------- 109
            R    F  L IIDLS N F+GNLP+  FL W AM  V+         MT           
Sbjct: 1658 RANFEFPTLCIIDLSYNXFAGNLPAGYFLTWVAMSRVDEEHFSYMQSMTGFVLIRTYRLY 1717

Query: 110  -----------------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQ 152
                             Y KIP     I LS+N+F+G IP SI  L+GL +LN+  N+L 
Sbjct: 1718 ENYNYSMTMTNKGMERVYPKIPRSFKAIDLSSNKFIGEIPKSIGKLRGLHLLNISSNSLT 1777

Query: 153  GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATF 212
            G IPS LGNL  LE+LDLS    +G IPQQL  +TFLEFFNVS N+L GPIPQGKQF TF
Sbjct: 1778 GHIPSFLGNLAQLEALDLSQNNLSGEIPQQLKGMTFLEFFNVSHNHLMGPIPQGKQFNTF 1837

Query: 213  DNTSFDGNSGLCGKPLSKGCESGETPTNEDHTEGSSESLFSGAS-DRKIILTGYAGGLVA 271
             N S++GN GLCG PLSK C + ++  +   T      L SG   +  I+L GY  GLV 
Sbjct: 1838 QNDSYEGNPGLCGNPLSKECGNSKSTASSPPTYKHGGDLESGRKVELMIVLMGYGSGLVV 1897

Query: 272  GLVLGFNFSTGIIGWILEKLGTQQK 296
            G+ +G+  +T    W ++  G +Q+
Sbjct: 1898 GMAIGYTLTTRKHEWFVKTFGKRQR 1922

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548694|ref|XP_002515403.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223545347|gb|EEF46852.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 154/331 (46%), Positives = 190/331 (57%), Gaps = 39/331 (11%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           SHN  EG++PRSL NC+KLE L LGN QI D FPSW G LP+L VLILRSN   GV+ +P
Sbjct: 649 SHNKLEGKLPRSLANCTKLEMLNLGNNQIYDVFPSWAGLLPQLRVLILRSNRLVGVVGKP 708

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMK------------------------- 100
            T   F +L+IIDLS+N F+G LP + F  W AMK                         
Sbjct: 709 ETNFDFPQLQIIDLSDNTFTGELPFEYFQKWTAMKSIDQDQLKYIEVDISFQVLDYSWSN 768

Query: 101 -------IVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG 153
                  I N  R  TY +I    A I  S+NRF G IP  I NL+ +Q+LNL  N L G
Sbjct: 769 HFSYSITITNKGRETTYERILKFFAVINFSSNRFEGRIPEVIGNLREVQLLNLSNNILTG 828

Query: 154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFD 213
            IP SLG++  LE+LDLS  + +G IP +L +L+FL FFNVSDN LTGP+P+G QF TF+
Sbjct: 829 QIPPSLGSMKELEALDLSRNQLSGEIPMKLAQLSFLAFFNVSDNNLTGPVPRGNQFDTFE 888

Query: 214 NTSFDGNSGLCGKPLSKGCESGE----TPTNEDHTEGSSESLFSGASDRKIILTGYAGGL 269
           N SFD N GLCG PLSK C   E     P+N +  +GS   L  G    K++L GYA GL
Sbjct: 889 NNSFDANPGLCGNPLSKKCGFSEASTLAPSNFEQDQGSEFPLEFGW---KVVLFGYASGL 945

Query: 270 VAGLVLGFNFSTGIIGWILEKLGTQQKATRR 300
           V G+V+G    T    W++      Q   RR
Sbjct: 946 VIGVVIGCILDTEKNEWLVNTFANWQLKVRR 976

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140509|ref|XP_002323625.1| predicted protein [Populus trichocarpa] gi|222868255|gb|EEF05386.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (666), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 151/315 (47%), Positives = 187/315 (59%), Gaps = 38/315 (12%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S N  EG+IP+SL NC+KLE L +   +I+D FPSWLG LPKL VLILRSN  +GVI +P
Sbjct: 629 SQNQLEGKIPKSLANCTKLEILNIEQNKITDVFPSWLGILPKLRVLILRSNRLHGVIGKP 688

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARR------------------- 106
           +    F +L+I+DLS N F GNLP + F  W+AMK +   R                   
Sbjct: 689 KANFEFQRLQIVDLSGNCFLGNLPLEYFRNWSAMKTIYKERPLYMQVVSSFQLPRYGMTY 748

Query: 107 -------------MMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG 153
                        M  Y KI + L  I LS+NRF G IP ++ +LK L +LNL  N L G
Sbjct: 749 HFDYSMTMTNKGVMTLYEKIQEFLTAIDLSSNRFEGGIPDALGDLKELYLLNLSNNFLTG 808

Query: 154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFD 213
            IP SL NL  LE+LDLS  K +G IP QL +LTFL  FNVS N L+GPIP+G QF TFD
Sbjct: 809 RIPPSLSNLKGLEALDLSQNKLSGEIPVQLAQLTFLAVFNVSHNLLSGPIPRGNQFETFD 868

Query: 214 NTSFDGNSGLCGKPLSKGCESGET--PTNEDHTEGSSESLFSGASDRKIILTGYAGGLVA 271
           +TSFD +SGLCGKPLSK C SGE   P  ++  EGS   L  G +   +++ GYA GLV 
Sbjct: 869 STSFDADSGLCGKPLSKKCGSGEDSLPAPKE-DEGSGSPLEFGWT---VVVIGYASGLVT 924

Query: 272 GLVLGFNFSTGIIGW 286
           G +LG   +T    W
Sbjct: 925 GAILGCVMNTRKYEW 939

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766212|emb|CAN63381.1| hypothetical protein VITISV_018438 [Vitis vinifera]

 Score =  260 bits (665), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 153/307 (49%), Positives = 177/307 (57%), Gaps = 37/307 (12%)

Query: 8   NLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRT 67
           N F+G+IPRS  NC  LE L LGN QI D FP WLG LP+L VLILRSN F+G I     
Sbjct: 623 NQFQGQIPRSFANCMMLEHLVLGNNQIBDIFPFWLGALPQLQVLILRSNXFHGAIGSWHX 682

Query: 68  GCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMK---IVNARRMMT--------------- 109
              F KLRI+DLS+N+F G+LPS+ F  W+AMK   I N  R M                
Sbjct: 683 NFRFPKLRIVDLSDNKFIGDLPSEYFQNWDAMKLTDIANDLRYMQARXEFXBLGYTWTGH 742

Query: 110 ---------------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGL 154
                          Y KIPDI   I  S N F G IP S  NLKGL +LNL  NNL G 
Sbjct: 743 YLYSLTMXNKGMQRFYEKIPDIFIAIDFSGNNFKGQIPISTGNLKGLHLLNLGDNNLTGH 802

Query: 155 IPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 214
           IPSSLGNL  LESLDLS  + +G IP QL  +TFL FFNVS N+LTG IPQG QF TF N
Sbjct: 803 IPSSLGNLPRLESLDLSQNQLSGEIPLQLTRITFLAFFNVSHNHLTGTIPQGNQFTTFPN 862

Query: 215 TSFDGNSGLCGKPLSKGCESGETPTNEDHTEGSSESLFSGASDRKIILTGYAGGLVAGLV 274
            SFDGN GLCG  LS+ C S E       ++  S S F    D K +L GY  GLV G+ 
Sbjct: 863 ASFDGNPGLCGSTLSRACGSFEASPPSSSSKQGSTSEF----DWKFVLMGYGSGLVIGVS 918

Query: 275 LGFNFST 281
           +G+  ++
Sbjct: 919 IGYCLTS 925

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140517|ref|XP_002323629.1| predicted protein [Populus trichocarpa] gi|222868259|gb|EEF05390.1| predicted protein [Populus trichocarpa]

 Score =  260 bits (664), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 149/319 (46%), Positives = 183/319 (57%), Gaps = 40/319 (12%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S N  EG+IP+SL NC++LE L L    I+D FPSWLG LP L V+ILRSN  +GVI +P
Sbjct: 657 SQNKLEGKIPKSLANCTELEILNLEQNNINDVFPSWLGVLPDLRVMILRSNGLHGVIGKP 716

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMK------------------------- 100
            T   F +L+I+DLSNN F G LP + F  W AMK                         
Sbjct: 717 ETNVEFPRLQIVDLSNNSFKGKLPLEYFRNWTAMKNVRNEDLIYMQANTSFLTSHNTMEK 776

Query: 101 -------IVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG 153
                  + N   M  Y KI D L  I LS+N F G IP  + +LK L +LNL  N L G
Sbjct: 777 QYEYSMTMTNKGVMRLYEKIQDSLTAIDLSSNGFEGGIPEVLGDLKALHLLNLSNNFLSG 836

Query: 154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFD 213
            IP SL NL  LE+LDLS+ K +G IP QL +LTFL  FNVS N+L+G IP+G QF TFD
Sbjct: 837 GIPPSLSNLKELEALDLSHNKLSGEIPVQLAQLTFLAVFNVSHNFLSGRIPRGNQFETFD 896

Query: 214 NTSFDGNSGLCGKPLSKGCESGET---PTNEDHTEGSSESLFSGASDRKIILTGYAGGLV 270
           NTSFD N GLCG+PLSK C +GE       ED   GS        S  K+++ GYA GLV
Sbjct: 897 NTSFDANPGLCGEPLSKECGNGEDSLPAAKEDEGSGSPPE-----SRWKVVVIGYASGLV 951

Query: 271 AGLVLGFNFSTGIIGWILE 289
            G++LG   +T    W++E
Sbjct: 952 IGVILGCAMNTRKYEWLVE 970

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.301	0.106	0.505	3.3e-42
TAIR|locus:2096339	786	RLP30 "receptor like protein 3	0.308	0.119	0.521	9.2e-41
TAIR|locus:2094613	784	RLP38 "receptor like protein 3	0.318	0.123	0.494	1.2e-40
TAIR|locus:2040035	671	RLP20 "receptor like protein 2	0.668	0.304	0.400	9.6e-31
TAIR|locus:2094563	595	RLP36 "receptor like protein 3	0.698	0.357	0.369	7.6e-30
TAIR|locus:2825389	784	RLP11 "AT1G71390" [Arabidopsis	0.721	0.280	0.387	1.4e-29
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.642	0.264	0.397	1.6e-29
TAIR|locus:2086974	881	RLP41 "AT3G25010" [Arabidopsis	0.708	0.245	0.349	3.3e-27
TAIR|locus:2173777	792	RLP54 "receptor like protein 5	0.662	0.255	0.359	1.7e-28
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.691	0.223	0.385	1.2e-28

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 3.3e-42, Sum P(2) = 3.3e-42
 Identities = 47/93 (50%), Positives = 62/93 (66%)

Query:     7 HNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPR 66
             +N   G++PRSL+NCS L FL + N ++ DTFP WL  LP L VL LRSN FYG I  P 
Sbjct:   548 YNRLTGKLPRSLLNCSSLRFLSVDNNRVKDTFPFWLKALPNLRVLTLRSNKFYGPISPPH 607

Query:    67 TG-CGFSKLRIIDLSNNRFSGNLPSKSFLCWNA 98
              G  GF +LRI ++++N F+G+LP   F+ W A
Sbjct:   608 QGPLGFPELRIFEIADNMFTGSLPPSFFVNWKA 640

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2096339 RLP30 "receptor like protein 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 9.2e-41, Sum P(2) = 9.2e-41
 Identities = 49/94 (52%), Positives = 61/94 (64%)

Query:     6 SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
             S+N  EG++P+SLINC+ +E L +G+  I DTFPSWL +LP L VLILRSN FYG +   
Sbjct:   457 SYNRLEGKLPKSLINCTGMELLNVGSNIIKDTFPSWLVSLPSLRVLILRSNAFYGSLYYD 516

Query:    66 RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAM 99
                 GF  LR+ID+S N FSG L    F  W  M
Sbjct:   517 HISFGFQHLRLIDISQNGFSGTLSPLYFSNWREM 550

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2094613 RLP38 "receptor like protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
 Identities = 48/97 (49%), Positives = 62/97 (63%)

Query:     6 SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
             S+N F G++P+SL+NC  +EFL +   +I DTFP WLG+   L VL+LRSN FYG +   
Sbjct:   455 SYNNFVGKLPKSLMNCQDMEFLNVRGNKIKDTFPFWLGSRKSLMVLVLRSNAFYGPVYNS 514

Query:    66 RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIV 102
              T  GF +L IID+SNN F G+LP   F  W  M  V
Sbjct:   515 TTYLGFPRLSIIDISNNDFVGSLPQDYFANWTEMATV 551

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040035 RLP20 "receptor like protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 9.6e-31, P = 9.6e-31
 Identities = 85/212 (40%), Positives = 115/212 (54%)

Query:     7 HNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPR 66
             +N   G++PRSL+NCS LEFL + N +I DTFP WL  LPKL VL L SN FYG I  P 
Sbjct:   350 YNRLTGKLPRSLLNCSSLEFLSVDNNRIKDTFPFWLKALPKLQVLTLSSNKFYGPISPPH 409

Query:    67 TG-CGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMK-IVN--ARRMMTYNKIP-DILAGII 121
              G  GF +LRI+++S+N+F+G+L S+ F  W A   ++N      M Y K P  ++    
Sbjct:   410 QGPLGFPELRILEISDNKFTGSLSSRYFENWKASSAMMNEYVGLYMVYEKNPYGVVVYTF 469

Query:   122 LS--NNRFVGAIPASIANLKGXXXXXXXXXXXXXXIPSSLGNLTNLESLDLSNKKFAGRI 179
             L   + ++ G        L                IP S+G L  L +L+LSN  F G I
Sbjct:   470 LDRIDLKYKGLNMEQARVLTSYSAIDFSRNLLEGNIPESIGLLKALIALNLSNNAFTGHI 529

Query:   180 PQQLVELTFLEFFNVSDNYLTGPIPQG-KQFA 210
             PQ L  L  L+  ++S N L+G IP G KQ +
Sbjct:   530 PQSLANLKELQSLDMSRNQLSGTIPNGLKQLS 561

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2094563 RLP36 "receptor like protein 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 7.6e-30, P = 7.6e-30
 Identities = 81/219 (36%), Positives = 115/219 (52%)

Query:     6 SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
             S+NL  G++P+SLINC ++EFL +   +I DTFP WLG+LP L VL+L SN FYG +  P
Sbjct:   294 SNNLV-GKLPKSLINCERIEFLNVKGNKIMDTFPFWLGSLPYLKVLMLGSNAFYGPVYNP 352

Query:    66 RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIV-NARRMMTYNKIPDILAGIILSN 124
                 GF  +RIID+SNN F G+LP   F  W  M +V +   +  +  + ++      S 
Sbjct:   353 SAYLGFPSIRIIDISNNNFVGSLPQDYFANWLEMSLVWSGSDIPQFKYMGNVNFSTYDSI 412

Query:   125 NRFVGAIPASIANL-KGXXXXXXXXXXXXXXIPSSLGNLTNLESLDLSNKKFAGRIPQQL 183
             +     +      + +G              IP S+G L+ L  L+LS   F G IP  L
Sbjct:   413 DLVYKGVETDFDRIFEGFNAIDFSGNRFSGHIPGSIGLLSELRLLNLSGNAFTGNIPPSL 472

Query:   184 VELTFLEFFNVSDNYLTGPIP--QGKQFATFDNTSFDGN 220
               +T LE  ++S N L+G IP   GK  +   NT+F  N
Sbjct:   473 ANITNLESLDLSRNNLSGEIPISLGK-LSFLSNTNFSYN 510

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-29, P = 1.4e-29
 Identities = 91/235 (38%), Positives = 121/235 (51%)

Query:     6 SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
             S N  EG+ P+SLINC  L F+ + + +I DTFPSWLG+LP L VLILRSN FYG +  P
Sbjct:   465 SGNQLEGKFPKSLINCKGLHFVNVESNKIKDTFPSWLGSLPSLQVLILRSNDFYGPLYHP 524

Query:    66 RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAM-KIVNARRMMTYNKIPDILA-GIILS 123
                 GF  LRIID+S+N FSG LP   F  W  M  +V+     +Y  I DI    +I  
Sbjct:   525 SMSIGFQGLRIIDISHNGFSGVLPPNFFSSWREMITLVHG----SYEYIEDIQNYSLIYR 580

Query:   124 NNRFVG-AIPASIANLK-GXXXXXXXXXXXXXXIPSSLGNLTNLESLDLSNKKFAGRIPQ 181
             +   V   +  S   ++                IP S+G L  L  L+LS   F   IP+
Sbjct:   581 SMEMVNKGVEMSFERIRQDFRAIDFSENRIYGEIPESIGCLEELRLLNLSGNAFTSDIPR 640

Query:   182 QLVELTFLEFFNVSDNYLTGPIPQ--GK-QFATFDNTSFDGNSGLCGKPLSKGCE 233
                 LT LE  ++S N L+G IPQ  GK  F ++ N S +   G    P+ +G +
Sbjct:   641 VWENLTKLETLDLSRNKLSGQIPQDLGKLSFLSYMNFSHNRLQG----PVPRGTQ 691

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 81/204 (39%), Positives = 110/204 (53%)

Query:     7 HNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPR 66
             HNLF G +P+SLINCS +EFL + + +I+DTFPSWL  LP L +L+LRSN FYG I  P 
Sbjct:   427 HNLFSGELPKSLINCSDIEFLNVEDNRINDTFPSWLELLPNLQILVLRSNEFYGPIFSPG 486

Query:    67 TGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMK-IVNAR-RMMTYNKIP---DIL-AGI 120
                 FS+LRI D+S NRF+G LPS  F+ W+ M  +V+   R++ Y       D     +
Sbjct:   487 DSLSFSRLRIFDISENRFTGVLPSDYFVGWSVMSSVVDIDGRIIQYTVTGIDRDFYHKSV 546

Query:   121 ILSNNRFVGAIPASIANLKGXXXXXXXXXXXXXXIPSSLGNLTNLESLDLSNKKFAGRIP 180
              L N      +  S   +                IP S+G L  +  L +SN  F G IP
Sbjct:   547 ALINKGLKMELVGSGFTI--YKTIDVSGNRLEGDIPESIGLLKEVIVLSMSNNAFTGHIP 604

Query:   181 QQLVELTFLEFFNVSDNYLTGPIP 204
               L  L+ L+  ++S N L+G IP
Sbjct:   605 PSLSNLSNLQSLDLSQNRLSGSIP 628

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2086974 RLP41 "AT3G25010" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 3.3e-27, P = 3.3e-27
 Identities = 79/226 (34%), Positives = 118/226 (52%)

Query:     7 HNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPR 66
             +N   G++PRSL+NCS L+FL + +  I DTFP +L  LPKL VL+L SN FYG +  P 
Sbjct:   562 YNRLTGKLPRSLLNCSALQFLSVDHNGIEDTFPFYLKVLPKLQVLLLSSNKFYGPLSPPN 621

Query:    67 TGC-GFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKI-VNARR--MMTYNKIPD---ILAG 119
              G  GF +LRI++++ N+ +G+LP   F+ W A  + +N  +   M Y+K+      L+ 
Sbjct:   622 QGSLGFPELRILEIAGNKLTGSLPQDFFVNWKASSLTMNEDQGLYMVYSKVVYGIYYLSY 681

Query:   120 IILSNNRFVGAIPASIANLKGXXXXXXXXXXXXXXIPSSLGNLTNLESLDLSNKKFAGRI 179
             +   + ++ G        L                IP S+G L  L +L+LSN  F G I
Sbjct:   682 LATIDLQYKGLSMEQKWVLTSSATIDLSGNRLEGEIPESIGLLKALIALNLSNNAFTGHI 741

Query:   180 PQQLVELTFLEFFNVSDNYLTGPIPQGK---QFATFDNTSFDGNSG 222
             P  L  L  +E  ++S N L+G IP G     F  + N S +  +G
Sbjct:   742 PLSLANLVKIESLDLSSNQLSGTIPNGLGTLSFLAYVNVSHNQLNG 787

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2173777 RLP54 "receptor like protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.7e-28, P = 1.7e-28
 Identities = 78/217 (35%), Positives = 112/217 (51%)

Query:     7 HNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPR 66
             HN   G++PRSL+NC+ L+FL +    I+DTFP WL  L +L +++LRSN F+G I  P 
Sbjct:   475 HNQISGKLPRSLVNCTTLKFLNVEGNHINDTFPFWLKALTRLEIIVLRSNRFHGPISSPE 534

Query:    67 TGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNR 126
                 F+ LRIID+S N F+G+LP   F  W+A  +VN  +   +   P+           
Sbjct:   535 VSLSFTALRIIDISRNSFNGSLPQNYFANWSA-PLVNTPQGYRW---PEYTGDEHSKYET 590

Query:   127 FVGAIPASIANLKGXX-----------XXXXXXXXXXXXIPSSLGNLTNLESLDLSNKKF 175
              + + P+    +KG                         IP S+G+L +L  LDLSN  F
Sbjct:   591 PLWSYPSIHLRIKGRSIELGKIPDTYTSIDFSGNSFEGQIPESIGDLKSLIVLDLSNNSF 650

Query:   176 AGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATF 212
              GRIP  L +L  LE  ++S N ++G IPQ  +  TF
Sbjct:   651 TGRIPSSLAKLKQLESLDLSQNRISGNIPQELRELTF 687

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 86/223 (38%), Positives = 118/223 (52%)

Query:     7 HNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPR 66
             HNL  G++PRSLI  S LE L + + +I+DTFP WL +L KL VL+LRSN F+G I E  
Sbjct:   625 HNLLVGKLPRSLIRFSNLEVLNVESNRINDTFPFWLSSLSKLQVLVLRSNAFHGPIHEAT 684

Query:    67 TGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNR 126
                 F +LRIID+S+N F+G LP++ F+ W+AM  +      +  K     +G+   ++ 
Sbjct:   685 ----FPELRIIDISHNHFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYMG--SGLYYQDSM 738

Query:   127 FV---GAIPASIANLKGXXXXXXXXXXXXXXIPSSLGNLTNLESLDLSNKKFAGRIPQQL 183
              +   G     +  L                IP S+G L  L  L+LSN  F G IP  +
Sbjct:   739 VLMNKGLAMELVRILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFGGHIPSSM 798

Query:   184 VELTFLEFFNVSDNYLTGPIPQ--GK-QFATFDNTSFDGNSGL 223
               LT LE  +VS N LTG IPQ  G   F  + N S +  +GL
Sbjct:   799 GNLTALESLDVSQNKLTGEIPQELGDLSFLAYMNFSHNQLAGL 841

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	305
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-22
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	5e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  105 bits (263), Expect = 3e-25
 Identities = 68/232 (29%), Positives = 106/232 (45%), Gaps = 14/232 (6%)

Query: 8   NLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRT 67
           N  EG IP+SL  C  L  + L +   S   PS    LP +  L + +N   G I   + 
Sbjct: 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK- 448

Query: 68  GCGFSKLRIIDLSNNRFSGNLPSKSF--------LCWNAMKIVNARRMMTYNKIPDILAG 119
                 L+++ L+ N+F G LP            L  N       R++ + +++  +   
Sbjct: 449 -WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLK-- 505

Query: 120 IILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRI 179
             LS N+  G IP  +++ K L  L+L +N L G IP+S   +  L  LDLS  + +G I
Sbjct: 506 --LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563

Query: 180 PQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKG 231
           P+ L  +  L   N+S N+L G +P    F   + ++  GN  LCG   + G
Sbjct: 564 PKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSG 615

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  103 bits (258), Expect = 2e-24
 Identities = 73/207 (35%), Positives = 100/207 (48%), Gaps = 12/207 (5%)

Query: 6   SHNLFEGRIPRSLIN-CSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEE 64
           S+N   G IP  +    S L +L L N   + + P   G++P L  L L +N+  G I  
Sbjct: 101 SNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEI-- 156

Query: 65  PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAG----- 119
           P     FS L+++DL  N   G +P+ S     +++ +         +IP  L       
Sbjct: 157 PNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215

Query: 120 -IILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGR 178
            I L  N   G IP  I  L  L  L+L YNNL G IPSSLGNL NL+ L L   K +G 
Sbjct: 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275

Query: 179 IPQQLVELTFLEFFNVSDNYLTGPIPQ 205
           IP  +  L  L   ++SDN L+G IP+
Sbjct: 276 IPPSIFSLQKLISLDLSDNSLSGEIPE 302

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 96.8 bits (241), Expect = 3e-22
 Identities = 67/201 (33%), Positives = 92/201 (45%), Gaps = 21/201 (10%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S+N+  G IP  + + S L+ L LG   +    P+ L  L  L  L L SN   G I  P
Sbjct: 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI--P 205

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN 125
           R       L+ I L  N  SG +P +               + + N +        L  N
Sbjct: 206 RELGQMKSLKWIYLGYNNLSGEIPYE------------IGGLTSLNHLD-------LVYN 246

Query: 126 RFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVE 185
              G IP+S+ NLK LQ L L  N L G IP S+ +L  L SLDLS+   +G IP+ +++
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306

Query: 186 LTFLEFFNVSDNYLTGPIPQG 206
           L  LE  ++  N  TG IP  
Sbjct: 307 LQNLEILHLFSNNFTGKIPVA 327

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 95.3 bits (237), Expect = 9e-22
 Identities = 67/209 (32%), Positives = 101/209 (48%), Gaps = 18/209 (8%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S N   G IP  L +   L  L L +  +    P  LG    L  + L+ N F G  E P
Sbjct: 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG--ELP 421

Query: 66  RTGCGFSKLRII---DLSNNRFSGNLPSKSFLCWN--AMKIVNARRMMTYNKIPDI---- 116
                F+KL ++   D+SNN   G + S+    W+  ++++++  R   +  +PD     
Sbjct: 422 S---EFTKLPLVYFLDISNNNLQGRINSRK---WDMPSLQMLSLARNKFFGGLPDSFGSK 475

Query: 117 -LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF 175
            L  + LS N+F GA+P  + +L  L  L L  N L G IP  L +   L SLDLS+ + 
Sbjct: 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535

Query: 176 AGRIPQQLVELTFLEFFNVSDNYLTGPIP 204
           +G+IP    E+  L   ++S N L+G IP
Sbjct: 536 SGQIPASFSEMPVLSQLDLSQNQLSGEIP 564

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 91.0 bits (226), Expect = 2e-20
 Identities = 48/121 (39%), Positives = 68/121 (56%), Gaps = 2/121 (1%)

Query: 116 ILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF 175
            + G+ L N    G IP  I+ L+ LQ +NL  N+++G IP SLG++T+LE LDLS   F
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 176 AGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFD--GNSGLCGKPLSKGCE 233
            G IP+ L +LT L   N++ N L+G +P           SF+   N+GLCG P  + C 
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538

Query: 234 S 234
            
Sbjct: 539 P 539

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 88.4 bits (219), Expect = 2e-19
 Identities = 72/210 (34%), Positives = 105/210 (50%), Gaps = 19/210 (9%)

Query: 8   NLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRT 67
           N+  G+IP SL N + LEFL L + Q+    P  LG +  L  + L  N   G I  P  
Sbjct: 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI--PYE 231

Query: 68  GCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTY-NKI-----PDI----- 116
             G + L  +DL  N  +G +PS      +   + N + +  Y NK+     P I     
Sbjct: 232 IGGLTSLNHLDLVYNNLTGPIPS------SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK 285

Query: 117 LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFA 176
           L  + LS+N   G IP  +  L+ L++L+L  NN  G IP +L +L  L+ L L + KF+
Sbjct: 286 LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345

Query: 177 GRIPQQLVELTFLEFFNVSDNYLTGPIPQG 206
           G IP+ L +   L   ++S N LTG IP+G
Sbjct: 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 85.3 bits (211), Expect = 2e-18
 Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 9/204 (4%)

Query: 8   NLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRT 67
           N   G IP S+ +  KL  L L +  +S   P  +  L  L +L L SN F G I  P  
Sbjct: 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI--PVA 327

Query: 68  GCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAG------II 121
                +L+++ L +N+FSG +P K+    N + +++        +IP+ L        +I
Sbjct: 328 LTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386

Query: 122 LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQ 181
           L +N   G IP S+   + L+ + LQ N+  G +PS    L  +  LD+SN    GRI  
Sbjct: 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446

Query: 182 QLVELTFLEFFNVSDNYLTGPIPQ 205
           +  ++  L+  +++ N   G +P 
Sbjct: 447 RKWDMPSLQMLSLARNKFFGGLPD 470

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 80.3 bits (198), Expect = 9e-17
 Identities = 66/202 (32%), Positives = 87/202 (43%), Gaps = 27/202 (13%)

Query: 7   HNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPR 66
           +N   G IP  +   + L  L L    ++   PS LG L  L  L L  N   G I  P 
Sbjct: 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI--PP 278

Query: 67  TGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNR 126
           +     KL  +DLS+N  SG +P                 ++   +  +IL    L +N 
Sbjct: 279 SIFSLQKLISLDLSDNSLSGEIP----------------ELVIQLQNLEILH---LFSNN 319

Query: 127 FVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVE- 185
           F G IP ++ +L  LQVL L  N   G IP +LG   NL  LDLS     G IP+ L   
Sbjct: 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS 379

Query: 186 --LTFLEFFNVSDNYLTGPIPQ 205
             L  L  F+   N L G IP+
Sbjct: 380 GNLFKLILFS---NSLEGEIPK 398

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 80.3 bits (198), Expect = 1e-16
 Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 10/184 (5%)

Query: 29  LGNYQISDTFPSWLGTL----PKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRF 84
           L N+  S     W G       ++  + L      G I        +  ++ I+LSNN+ 
Sbjct: 48  LSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPY--IQTINLSNNQL 105

Query: 85  SGNLPSKSFLCWNAMKIVNARRMMTYNKIPD----ILAGIILSNNRFVGAIPASIANLKG 140
           SG +P   F   ++++ +N         IP      L  + LSNN   G IP  I +   
Sbjct: 106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSS 165

Query: 141 LQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200
           L+VL+L  N L G IP+SL NLT+LE L L++ +  G+IP++L ++  L++  +  N L+
Sbjct: 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225

Query: 201 GPIP 204
           G IP
Sbjct: 226 GEIP 229

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 45/143 (31%), Positives = 62/143 (43%), Gaps = 24/143 (16%)

Query: 85  SGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVL 144
           S N P K    WN+   V   + +T N    +   I LS     G I ++I  L  +Q +
Sbjct: 40  SINDPLKYLSNWNSSADVCLWQGITCNNSSRV-VSIDLSGKNISGKISSAIFRLPYIQTI 98

Query: 145 NLQYNNLQGLIP-------SSL----------------GNLTNLESLDLSNKKFAGRIPQ 181
           NL  N L G IP       SSL                G++ NLE+LDLSN   +G IP 
Sbjct: 99  NLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPN 158

Query: 182 QLVELTFLEFFNVSDNYLTGPIP 204
            +   + L+  ++  N L G IP
Sbjct: 159 DIGSFSSLKVLDLGGNVLVGKIP 181

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 48.3 bits (116), Expect = 5e-08
 Identities = 21/56 (37%), Positives = 28/56 (50%)

Query: 120 IILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF 175
           + LSNNR       +   L  L+VL+L  NNL  + P +   L +L SLDLS    
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 45/153 (29%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S N F G +PR                         LG+L +L  L L  N   G I + 
Sbjct: 483 SRNQFSGAVPRK------------------------LGSLSELMQLKLSENKLSGEIPDE 518

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN 125
            + C   KL  +DLS+N+ SG +P+                  +++++P +L+ + LS N
Sbjct: 519 LSSC--KKLVSLDLSHNQLSGQIPA------------------SFSEMP-VLSQLDLSQN 557

Query: 126 RFVGAIPASIANLKGLQVLNLQYNNLQGLIPSS 158
           +  G IP ++ N++ L  +N+ +N+L G +PS+
Sbjct: 558 QLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 3/102 (2%)

Query: 1   MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYG 60
           M+ K S N   G IP  L +C KL  L L + Q+S   P+    +P L+ L L  N   G
Sbjct: 502 MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG 561

Query: 61  VIEEPRTGCGFSKLRIIDLSNNRFSGNLPSK-SFLCWNAMKI 101
            I  P+       L  +++S+N   G+LPS  +FL  NA  +
Sbjct: 562 EI--PKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAV 601

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 137 NLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTF-LEFFNVS 195
           N   +  ++L   N+ G I S++  L  +++++LSN + +G IP  +   +  L + N+S
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 196 DNYLTGPIPQG 206
           +N  TG IP+G
Sbjct: 127 NNNFTGSIPRG 137

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 4e-05
 Identities = 18/60 (30%), Positives = 26/60 (43%)

Query: 140 GLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYL 199
            L+ L+L  N L  +   +   L NL+ LDLS        P+    L  L   ++S N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 12  GRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGF 71
           G IP  +     L+ + L    I    P  LG++  L VL L  N F G I  P +    
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI--PESLGQL 489

Query: 72  SKLRIIDLSNNRFSGNLPS 90
           + LRI++L+ N  SG +P+
Sbjct: 490 TSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 36.7 bits (86), Expect = 5e-04
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 139 KGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
             L+ L+L  N +  L    L NL NLE+LDLS 
Sbjct: 1   TNLETLDLSNNQITDL--PPLSNLPNLETLDLSG 32

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 60/184 (32%), Positives = 89/184 (48%), Gaps = 28/184 (15%)

Query: 22  SKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN 81
           S L+ L L + +I    PS L  LP L  L L  N    + + P+     S L  +DLS 
Sbjct: 140 SNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN---DLSDLPKLLSNLSNLNNLDLSG 195

Query: 82  NRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGL 141
           N+ S +LP +  L  +A++ ++                  LSNN  +  + +S++NLK L
Sbjct: 196 NKIS-DLPPEIELL-SALEELD------------------LSNNSII-ELLSSLSNLKNL 234

Query: 142 QVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTG 201
             L L  NN    +P S+GNL+NLE+LDLSN +        L  LT L   ++S N L+ 
Sbjct: 235 SGLELS-NNKLEDLPESIGNLSNLETLDLSNNQ--ISSISSLGSLTNLRELDLSGNSLSN 291

Query: 202 PIPQ 205
            +P 
Sbjct: 292 ALPL 295

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 54/171 (31%), Positives = 69/171 (40%), Gaps = 27/171 (15%)

Query: 13  RIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFS 72
            +P  L N   L+ L L    +SD     L  L  LN L L  N     +         S
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNKI-SDLPPEIELL--S 209

Query: 73  KLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIP 132
            L  +DLSNN     L S S L                      L+G+ LSNN+    +P
Sbjct: 210 ALEELDLSNNSIIELLSSLSNLKN--------------------LSGLELSNNKLE-DLP 248

Query: 133 ASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQL 183
            SI NL  L+ L+L  N +     SSLG+LTNL  LDLS    +  +P   
Sbjct: 249 ESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIA 297

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	305
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.85
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.82
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.82
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.79
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.77
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.77
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.75
PLN03150	623	hypothetical protein; Provisional	99.75
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.7
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.7
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.69
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.68
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.68
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.65
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.65
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.58
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.57
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.56
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.49
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.38
PLN03150	623	hypothetical protein; Provisional	99.37
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.35
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.34
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.23
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.22
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.22
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.16
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.09
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.04
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.98
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.85
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.84
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.77
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.76
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.72
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.58
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.53
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.4
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.3
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.28
PRK15386	426	type III secretion protein GogB; Provisional	98.18
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.17
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.17
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.11
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.11
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.0
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.95
PRK15386	426	type III secretion protein GogB; Provisional	97.85
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.69
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.67
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.56
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.56
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.45
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.45
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.41
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.21
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.95
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.49
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.28
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.22
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.0
KOG4308	478	consensus LRR-containing protein [Function unknown	95.73
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.68
smart00370	26	LRR Leucine-rich repeats, outliers.	95.68
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.09
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.11
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.15
smart00370	26	LRR Leucine-rich repeats, outliers.	92.31
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.31
KOG4308	478	consensus LRR-containing protein [Function unknown	91.55
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.42
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.28
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	88.23
KOG1947	482	consensus Leucine rich repeat proteins, some prote	86.91
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	85.13
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	84.74
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	83.75
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	82.29
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	82.26
KOG3864	221	consensus Uncharacterized conserved protein [Funct	80.73

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=2.8e-30  Score=257.63  Aligned_cols=223  Identities=28%  Similarity=0.411  Sum_probs=150.2

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN   81 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~   81 (305)
                      +|+|++|++++.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++..|..+  ..++.|+.|++++
T Consensus       360 ~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~  437 (968)
T PLN00113        360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF--TKLPLVYFLDISN  437 (968)
T ss_pred             EEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH--hcCCCCCEEECcC
Confidence            45666666665556555555555555555555555555555555555555555555554444433  4444455555555


Q ss_pred             CcCcccCChhhhhcc-----------------------chhhhhhhcccccc------CcccccccEEEccCCccccccc
Q 040815           82 NRFSGNLPSKSFLCW-----------------------NAMKIVNARRMMTY------NKIPDILAGIILSNNRFVGAIP  132 (305)
Q Consensus        82 n~l~g~~p~~~~~~l-----------------------~~L~~l~l~~~~~~------~~~~~~L~~L~ls~n~l~~~~p  132 (305)
                      |.+++.+|.. +..+                       .+|+.|+++.+...      ...++.|+.|++++|.+.+.+|
T Consensus       438 N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  516 (968)
T PLN00113        438 NNLQGRINSR-KWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP  516 (968)
T ss_pred             CcccCccChh-hccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC
Confidence            4444333322 3333                       44555554432211      1224567888888888888888


Q ss_pred             hhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCcc
Q 040815          133 ASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATF  212 (305)
Q Consensus       133 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l  212 (305)
                      ..+..+++|+.|+|++|.+++.+|..+..+++|++|+|++|++++.+|..+..++.|+++++++|+++|.+|....+..+
T Consensus       517 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~  596 (968)
T PLN00113        517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAI  596 (968)
T ss_pred             hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhccc
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888887777778


Q ss_pred             CCCccCCCCCCCCCC
Q 040815          213 DNTSFDGNSGLCGKP  227 (305)
Q Consensus       213 ~~~~~~~n~~~c~~~  227 (305)
                      ....+.||+.+|+.+
T Consensus       597 ~~~~~~~n~~lc~~~  611 (968)
T PLN00113        597 NASAVAGNIDLCGGD  611 (968)
T ss_pred             ChhhhcCCccccCCc
Confidence            788888998888743

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=1.1e-28  Score=246.25  Aligned_cols=225  Identities=30%  Similarity=0.413  Sum_probs=197.8

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+.+..|..+  ..+++|+.|+++
T Consensus       335 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~L~~L~L~  412 (968)
T PLN00113        335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRLQ  412 (968)
T ss_pred             CEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH--hCCCCCCEEECc
Confidence            479999999999999999999999999999999999999999999999999999999998887776  789999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccccC-----------------------------cccccccEEEccCCcccccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYN-----------------------------KIPDILAGIILSNNRFVGAI  131 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~-----------------------------~~~~~L~~L~ls~n~l~~~~  131 (305)
                      +|++++.+|.. |..++.|+.++++.+....                             .....|+.|++++|.+++.+
T Consensus       413 ~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~  491 (968)
T PLN00113        413 DNSFSGELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAV  491 (968)
T ss_pred             CCEeeeECChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCcc
Confidence            99999888865 8889999988876521100                             01245788888999998899


Q ss_pred             chhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCC
Q 040815          132 PASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFA  210 (305)
Q Consensus       132 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~  210 (305)
                      |..+.++++|+.|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..+..+++|+.||+++|+++|.+|.. ..+.
T Consensus       492 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  571 (968)
T PLN00113        492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE  571 (968)
T ss_pred             ChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998875 4456


Q ss_pred             ccCCCccCCCCCCCCCCC
Q 040815          211 TFDNTSFDGNSGLCGKPL  228 (305)
Q Consensus       211 ~l~~~~~~~n~~~c~~~~  228 (305)
                      .+..+++.+|+..+..|.
T Consensus       572 ~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        572 SLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             ccCEEeccCCcceeeCCC
Confidence            778888899988775553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.91  E-value=4.7e-26  Score=201.93  Aligned_cols=234  Identities=21%  Similarity=0.240  Sum_probs=150.4

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCC---------------------
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFY---------------------   59 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~---------------------   59 (305)
                      ++|+|++|+|+..-...|.++.+|..|.|+.|+++...+..|.++++|+.|+|..|+|.                     
T Consensus       176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN  255 (873)
T KOG4194|consen  176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN  255 (873)
T ss_pred             eEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc
Confidence            46777777777666667777777777777777776555556666777777777766654                     


Q ss_pred             ---cccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccc------cccCcccccccEEEccCCccccc
Q 040815           60 ---GVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRM------MTYNKIPDILAGIILSNNRFVGA  130 (305)
Q Consensus        60 ---~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~------~~~~~~~~~L~~L~ls~n~l~~~  130 (305)
                         ......|  ..+.++++|+|+.|+++ .+..++.-++++|+.|+++.+      .+.....+.|++|+|++|+++..
T Consensus       256 ~I~kL~DG~F--y~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l  332 (873)
T KOG4194|consen  256 DISKLDDGAF--YGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL  332 (873)
T ss_pred             CcccccCcce--eeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence               2222223  45667777777777777 677777777888888887762      33445577899999999999866


Q ss_pred             cchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCc---------------------------ccc
Q 040815          131 IPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIP---------------------------QQL  183 (305)
Q Consensus       131 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p---------------------------~~~  183 (305)
                      .+..|..+..|++|+|++|.++..-..+|..+++|++|||++|.+++.+.                           .+|
T Consensus       333 ~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAf  412 (873)
T KOG4194|consen  333 DEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAF  412 (873)
T ss_pred             ChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhh
Confidence            67777766666666666666664444455555555555555555554332                           244


Q ss_pred             ccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCCCCCCC----------------CCCCCCCC
Q 040815          184 VELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLS----------------KGCESGET  237 (305)
Q Consensus       184 ~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~----------------~~c~~~~~  237 (305)
                      ..++.|++|||.+|.+...-|..-.-..+..+.+....++|+|++.                ..|..|++
T Consensus       413 sgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~  482 (873)
T KOG4194|consen  413 SGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEP  482 (873)
T ss_pred             ccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcc
Confidence            4455555555555555544444322224555556666789999765                56887765

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.89  E-value=6.8e-24  Score=188.34  Aligned_cols=197  Identities=23%  Similarity=0.191  Sum_probs=125.8

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      +.|+|.+|.|+..-.+++..++.|+.||||.|.|+...-..|..-.++++|+|++|.|+.+....|  .++.+|.+|.|+
T Consensus       128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F--~~lnsL~tlkLs  205 (873)
T KOG4194|consen  128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF--DSLNSLLTLKLS  205 (873)
T ss_pred             eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccc--cccchheeeecc
Confidence            357788888886667777788888888888888875544566666778888888888887766666  677788888888


Q ss_pred             CCcCcccCChhhhhccchhhhhhhcccc------ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMM------TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGL  154 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  154 (305)
                      .|+++ .+|...|..+++|+.|++..++      ..++.+++|+.|.|..|++...-.+.|..+.++++|+|+.|+++..
T Consensus       206 rNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v  284 (873)
T KOG4194|consen  206 RNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV  284 (873)
T ss_pred             cCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence            88888 8888888888888888877521      1223344555555555555544444455555555555555555444


Q ss_pred             CCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCccc
Q 040815          155 IPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT  200 (305)
Q Consensus       155 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  200 (305)
                      -.+++.++++|+.|+||+|.|....++.+...++|++|||++|+++
T Consensus       285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~  330 (873)
T KOG4194|consen  285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT  330 (873)
T ss_pred             hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence            4444445555555555555554444444444455555555555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.85  E-value=3.5e-23  Score=176.03  Aligned_cols=225  Identities=19%  Similarity=0.196  Sum_probs=165.1

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccC-ccCCcccCCCCCCCCCCCccEEEcc
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRS-NIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      +++|..|.|+...+.+|+.+++|+.|||+.|+|+.+-|++|.++.+|..|.+-+ |+|+.+....|  .++..|+.|.+.
T Consensus        71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F--~gL~slqrLllN  148 (498)
T KOG4237|consen   71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF--GGLSSLQRLLLN  148 (498)
T ss_pred             EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh--hhHHHHHHHhcC
Confidence            578999999977788999999999999999999999999999999887776555 89987776666  667777777776


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccc------cccC-------------------------------------------
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRM------MTYN-------------------------------------------  111 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~------~~~~-------------------------------------------  111 (305)
                      -|++. -++..+|..++++..|.+.++      ....                                           
T Consensus       149 an~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  149 ANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             hhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            66666 566666666666554443320      0000                                           


Q ss_pred             ---------------cccccccEE--Ecc-CCccccccc-hhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCC
Q 040815          112 ---------------KIPDILAGI--ILS-NNRFVGAIP-ASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN  172 (305)
Q Consensus       112 ---------------~~~~~L~~L--~ls-~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  172 (305)
                                     +....++.+  .++ .+...+..| ..|..+++|++|+|++|++++.-+.+|.+...+++|.|..
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~  307 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR  307 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence                           000011111  111 122222333 3477899999999999999999999999999999999999


Q ss_pred             CcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCCCCCCCC
Q 040815          173 KKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPLS  229 (305)
Q Consensus       173 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~~  229 (305)
                      |++....-..|.++..|+.|+|.+|+++..-|.. .....+..+.+.+||+.|+|.+.
T Consensus       308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~  365 (498)
T KOG4237|consen  308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA  365 (498)
T ss_pred             chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence            9998666678889999999999999999766643 23445667778899999999653

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.82  E-value=2.5e-22  Score=179.98  Aligned_cols=216  Identities=25%  Similarity=0.320  Sum_probs=137.7

Q ss_pred             EccCCccc-cccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCC
Q 040815            4 KRSHNLFE-GRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNN   82 (305)
Q Consensus         4 ~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n   82 (305)
                      ++.+|++. ..+|..+..+..|+.||||.|++. +.|..+..-+++-+|+||+|+|..++...+  .++..|-+||||+|
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lf--inLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLF--INLTDLLFLDLSNN  160 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHH--HhhHhHhhhccccc
Confidence            44455544 235555666666666666666664 456666666666666666666654433333  45566666666666


Q ss_pred             cCcccCChhhhhccchhhhhhhcc------------------------cc-ccC------cccccccEEEccCCcccccc
Q 040815           83 RFSGNLPSKSFLCWNAMKIVNARR------------------------MM-TYN------KIPDILAGIILSNNRFVGAI  131 (305)
Q Consensus        83 ~l~g~~p~~~~~~l~~L~~l~l~~------------------------~~-~~~------~~~~~L~~L~ls~n~l~~~~  131 (305)
                      ++. .+|+. ...+..|+.|.+++                        .. ...      ..+.+|..+|+|.|++. .+
T Consensus       161 rLe-~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v  237 (1255)
T KOG0444|consen  161 RLE-MLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV  237 (1255)
T ss_pred             hhh-hcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence            665 55554 44444555554443                        11 111      12446777888888888 88


Q ss_pred             chhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCccc--CCCCCCCCC
Q 040815          132 PASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT--GPIPQGKQF  209 (305)
Q Consensus       132 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~--~~~p~~~~~  209 (305)
                      |+.+..+++|+.|+||+|+|+ .+....+.-.+|++|+||.|+++ .+|+.+..+++|+.|.+.+|+++  |.....+.+
T Consensus       238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL  315 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL  315 (1255)
T ss_pred             hHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence            888888888888888888888 44555566678888888888888 78888888888888888888764  433223455


Q ss_pred             CccCCCccCCCC------CCCCCC
Q 040815          210 ATFDNTSFDGNS------GLCGKP  227 (305)
Q Consensus       210 ~~l~~~~~~~n~------~~c~~~  227 (305)
                      ..+..+....|.      .+|.|+
T Consensus       316 ~~Levf~aanN~LElVPEglcRC~  339 (1255)
T KOG0444|consen  316 IQLEVFHAANNKLELVPEGLCRCV  339 (1255)
T ss_pred             hhhHHHHhhccccccCchhhhhhH
Confidence            555555555553      466665

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.82  E-value=4.8e-22  Score=178.18  Aligned_cols=222  Identities=24%  Similarity=0.317  Sum_probs=162.5

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCc----ccCC-------------
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYG----VIEE-------------   64 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~-------------   64 (305)
                      +|+||+|+|..+...-|.+++.|-.||||+|++. .+|..+..+.+|++|+|++|.+..    ..|.             
T Consensus       130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq  208 (1255)
T KOG0444|consen  130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ  208 (1255)
T ss_pred             EEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence            4566666666333334556666666677777663 566666667777777777775421    0111             


Q ss_pred             ------CCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhcccccc-----CcccccccEEEccCCccccccch
Q 040815           65 ------PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTY-----NKIPDILAGIILSNNRFVGAIPA  133 (305)
Q Consensus        65 ------~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~-----~~~~~~L~~L~ls~n~l~~~~p~  133 (305)
                            +.++-.+.+|..+|+|.|++. .+|+. ...+.+|+.|+++++...     .....+|++|++|.|+++ .+|+
T Consensus       209 RTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec-ly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~  285 (1255)
T KOG0444|consen  209 RTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC-LYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPD  285 (1255)
T ss_pred             chhhcCCCchhhhhhhhhccccccCCC-cchHH-HhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchH
Confidence                  112245667778888888877 67754 667788888887764321     123567888999999998 8999


Q ss_pred             hhhCCCCCCEEecCCcccc-ccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCc
Q 040815          134 SIANLKGLQVLNLQYNNLQ-GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFAT  211 (305)
Q Consensus       134 ~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~  211 (305)
                      .++.++.|+.|.+.+|+++ .-+|..++++.+|+++..++|.+. .+|+.+..+.+|+.|.|++|.+- .+|+. ..++.
T Consensus       286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~  363 (1255)
T KOG0444|consen  286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPD  363 (1255)
T ss_pred             HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCC
Confidence            9999999999999999876 347888999999999999999997 89999999999999999999998 56665 45677


Q ss_pred             cCCCccCCCCCCCCCCCC
Q 040815          212 FDNTSFDGNSGLCGKPLS  229 (305)
Q Consensus       212 l~~~~~~~n~~~c~~~~~  229 (305)
                      +..+++..||.+.-+|.+
T Consensus       364 l~vLDlreNpnLVMPPKP  381 (1255)
T KOG0444|consen  364 LKVLDLRENPNLVMPPKP  381 (1255)
T ss_pred             cceeeccCCcCccCCCCc
Confidence            888899999988876654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.79  E-value=5.5e-21  Score=145.79  Aligned_cols=156  Identities=29%  Similarity=0.563  Sum_probs=88.4

Q ss_pred             EEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCC
Q 040815            3 AKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNN   82 (305)
Q Consensus         3 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n   82 (305)
                      |.||+|+++ .+|+.+.++.+|+.|++++|+|. .+|..++.+++|+.|+++-|++. ..|..|  +.++.|+.|||.+|
T Consensus        38 LtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf--gs~p~levldltyn  112 (264)
T KOG0617|consen   38 LTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF--GSFPALEVLDLTYN  112 (264)
T ss_pred             hhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc--CCCchhhhhhcccc
Confidence            456666666 55556666666666666666663 45656666666666666666654 333334  56666666666666


Q ss_pred             cCcc-cCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccC
Q 040815           83 RFSG-NLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGN  161 (305)
Q Consensus        83 ~l~g-~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  161 (305)
                      ++.. .+|.. |..++.                  |+.|++++|.+. .+|..++++++|+.|.+..|.+- .+|..++.
T Consensus       113 nl~e~~lpgn-ff~m~t------------------lralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~  171 (264)
T KOG0617|consen  113 NLNENSLPGN-FFYMTT------------------LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD  171 (264)
T ss_pred             ccccccCCcc-hhHHHH------------------HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH
Confidence            6552 34433 222222                  333336666665 55666666666666666666655 45555666


Q ss_pred             CCCCCEEeCCCCcCCccCcccccc
Q 040815          162 LTNLESLDLSNKKFAGRIPQQLVE  185 (305)
Q Consensus       162 l~~L~~L~L~~N~l~~~~p~~~~~  185 (305)
                      +..|++|++.+|+++ .+|..++.
T Consensus       172 lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  172 LTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             HHHHHHHhcccceee-ecChhhhh
Confidence            666666666666665 44444443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.77  E-value=1.1e-20  Score=161.46  Aligned_cols=93  Identities=26%  Similarity=0.400  Sum_probs=68.0

Q ss_pred             ccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCC-----------------------ccCccccccC
Q 040815          130 AIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFA-----------------------GRIPQQLVEL  186 (305)
Q Consensus       130 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-----------------------~~~p~~~~~l  186 (305)
                      -+|..+..+++|..|+|++|.+. .+|..++.+..|+.||++.|++.                       ...|+.+.++
T Consensus       426 fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm  504 (565)
T KOG0472|consen  426 FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNM  504 (565)
T ss_pred             cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence            45555666777777777777776 56777777777777777777664                       2223346678


Q ss_pred             CCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCC
Q 040815          187 TFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL  223 (305)
Q Consensus       187 ~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~  223 (305)
                      .+|..||+.+|.+....|..+...++..+.+.|||+.
T Consensus       505 ~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  505 RNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            8899999999999955555577788888889999874

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.77  E-value=3.6e-21  Score=164.32  Aligned_cols=209  Identities=20%  Similarity=0.280  Sum_probs=132.6

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN   81 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~   81 (305)
                      +|++.+|++. ..|.+++.+..+..++.+.|++. .+|..++.+.+|..|+.++|.+....+ .+  +.+..|+.++..+
T Consensus        72 vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~-~i--~~~~~l~dl~~~~  146 (565)
T KOG0472|consen   72 VLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPD-SI--GRLLDLEDLDATN  146 (565)
T ss_pred             EEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCc-hH--HHHhhhhhhhccc
Confidence            4666677766 56666666666666777776664 466666666666666666666654422 22  4555566666666


Q ss_pred             CcCcccCChhhhhccchhhhhhhcccccc----------------------------CcccccccEEEccCCccccccch
Q 040815           82 NRFSGNLPSKSFLCWNAMKIVNARRMMTY----------------------------NKIPDILAGIILSNNRFVGAIPA  133 (305)
Q Consensus        82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~~----------------------------~~~~~~L~~L~ls~n~l~~~~p~  133 (305)
                      |+++ ++|++ +..+.++..+++.++...                            ...+..|.-||+..|++. .+| 
T Consensus       147 N~i~-slp~~-~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-  222 (565)
T KOG0472|consen  147 NQIS-SLPED-MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-  222 (565)
T ss_pred             cccc-cCchH-HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-
Confidence            6665 55544 444445544444331110                            011233444445555554 444 


Q ss_pred             hhhCCCCCCEEecCCccccccCCcc-ccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCcc
Q 040815          134 SIANLKGLQVLNLQYNNLQGLIPSS-LGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATF  212 (305)
Q Consensus       134 ~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l  212 (305)
                      .|.++..|++++++.|++. .+|.. ..+++++.+|||..|++. +.|+.+.-+.+|.+||+|+|.+++..++.+.+ .+
T Consensus       223 ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL  299 (565)
T KOG0472|consen  223 EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HL  299 (565)
T ss_pred             CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-ee
Confidence            4555555555555555555 33433 347889999999999998 89999999999999999999999777766665 77


Q ss_pred             CCCccCCCCC
Q 040815          213 DNTSFDGNSG  222 (305)
Q Consensus       213 ~~~~~~~n~~  222 (305)
                      ..+.+.|||.
T Consensus       300 ~~L~leGNPl  309 (565)
T KOG0472|consen  300 KFLALEGNPL  309 (565)
T ss_pred             eehhhcCCch
Confidence            7788899985

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.75  E-value=1.1e-19  Score=169.30  Aligned_cols=213  Identities=24%  Similarity=0.360  Sum_probs=151.0

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      +++|+++|+++ .+|+.+..+.+|+.++...|+++ .+|..+...++|+.|....|.+..+.+..   .+++.|++|||.
T Consensus       244 ~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~l---e~~~sL~tLdL~  318 (1081)
T KOG0618|consen  244 QYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFL---EGLKSLRTLDLQ  318 (1081)
T ss_pred             eeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcc---cccceeeeeeeh
Confidence            36788888888 57788888999999999999884 67888888888888888888887665433   568999999999


Q ss_pred             CCcCcccCChhhhhccch-hhhhhhcc------------------------------ccccCcccccccEEEccCCcccc
Q 040815           81 NNRFSGNLPSKSFLCWNA-MKIVNARR------------------------------MMTYNKIPDILAGIILSNNRFVG  129 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~-L~~l~l~~------------------------------~~~~~~~~~~L~~L~ls~n~l~~  129 (305)
                      .|++. .+|+..+..... +..++.+.                              +.........|+.|+|++|+++ 
T Consensus       319 ~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-  396 (1081)
T KOG0618|consen  319 SNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-  396 (1081)
T ss_pred             hcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-
Confidence            99998 888876655543 55554332                              1111122345666666666665 


Q ss_pred             ccc-hhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccC-CCCCCC
Q 040815          130 AIP-ASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTG-PIPQGK  207 (305)
Q Consensus       130 ~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~  207 (305)
                      .+| ..+.++..|++|+||+|+++ .+|..+..+..|++|...+|++. ..| .+..++.|+.+|++.|+++. .+|...
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~  473 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL  473 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence            333 33455666666666666666 45566666666666666666665 555 67788999999999999974 455555


Q ss_pred             CCCccCCCccCCCCCC
Q 040815          208 QFATFDNTSFDGNSGL  223 (305)
Q Consensus       208 ~~~~l~~~~~~~n~~~  223 (305)
                      ..+++..+++.||++.
T Consensus       474 p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  474 PSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             CCcccceeeccCCccc
Confidence            5578999999999863

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.75  E-value=1e-20  Score=144.28  Aligned_cols=180  Identities=26%  Similarity=0.431  Sum_probs=147.2

Q ss_pred             ccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccc
Q 040815           18 LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWN   97 (305)
Q Consensus        18 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~   97 (305)
                      +-++.+++.|.||+|+++ .+|..+..+.+|+.|++.+|+++.. |..+  +++++|+.|+++-|++. .+|.+ |+.++
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~l-p~~i--ssl~klr~lnvgmnrl~-~lprg-fgs~p  102 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEEL-PTSI--SSLPKLRILNVGMNRLN-ILPRG-FGSFP  102 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhc-Chhh--hhchhhhheecchhhhh-cCccc-cCCCc
Confidence            446788999999999997 5777889999999999999999865 3333  78999999999999998 88876 88777


Q ss_pred             hhhhhhhccccccCcccccccEEEccCCcccc-ccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCC
Q 040815           98 AMKIVNARRMMTYNKIPDILAGIILSNNRFVG-AIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFA  176 (305)
Q Consensus        98 ~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  176 (305)
                      .|+.|+                  +++|++.. .+|..|..++.|+.|+|+.|.+. .+|..++++++|+.|.+..|.+-
T Consensus       103 ~levld------------------ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll  163 (264)
T KOG0617|consen  103 ALEVLD------------------LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL  163 (264)
T ss_pred             hhhhhh------------------ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh
Confidence            666655                  77777763 46888888999999999999999 77888999999999999999998


Q ss_pred             ccCccccccCCCCCEEeccCCcccCCCCCCCCCCcc---CCCccCCCCCC
Q 040815          177 GRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATF---DNTSFDGNSGL  223 (305)
Q Consensus       177 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l---~~~~~~~n~~~  223 (305)
                       .+|..++.+..|++|.+++|.++-..|+.+.+...   .....+.|||.
T Consensus       164 -~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv  212 (264)
T KOG0617|consen  164 -SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWV  212 (264)
T ss_pred             -hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCC
Confidence             89999999999999999999999555554433222   22334566653

>PLN03150 hypothetical protein; Provisional

Probab=99.75  E-value=7.7e-18  Score=159.43  Aligned_cols=117  Identities=40%  Similarity=0.680  Sum_probs=105.1

Q ss_pred             ccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccC
Q 040815          117 LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSD  196 (305)
Q Consensus       117 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~  196 (305)
                      ++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCCCCC--CCccCCCccCCCCCCCCCCCCCCCC
Q 040815          197 NYLTGPIPQGKQ--FATFDNTSFDGNSGLCGKPLSKGCE  233 (305)
Q Consensus       197 N~l~~~~p~~~~--~~~l~~~~~~~n~~~c~~~~~~~c~  233 (305)
                      |.++|.+|....  ...+..+.+.+|+.+|+.|....|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999997521  2344567789999999877555553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.70  E-value=9.4e-17  Score=152.65  Aligned_cols=60  Identities=25%  Similarity=0.336  Sum_probs=28.9

Q ss_pred             CCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCC
Q 040815          140 GLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIP  204 (305)
Q Consensus       140 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  204 (305)
                      +|+.|++++|.++. +|..   ..+|+.|++++|+++ .+|..+..++.|+.|++++|+|++..|
T Consensus       403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence            34444444444442 3322   123444555555554 445555555555555555555554433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.70  E-value=1e-18  Score=149.11  Aligned_cols=199  Identities=21%  Similarity=0.206  Sum_probs=169.1

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCC-cccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGN-YQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L   79 (305)
                      |.||||+|.|+.+-|++|.++.++..|-+-+ |+|+....+.|+++..|+.|.+.-|.+.-...+.+  ..+++|..|.+
T Consensus        94 RrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al--~dL~~l~lLsl  171 (498)
T KOG4237|consen   94 RRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDAL--RDLPSLSLLSL  171 (498)
T ss_pred             ceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHH--HHhhhcchhcc
Confidence            5799999999999999999999988876555 99988777789999999999999888877666666  77888888888


Q ss_pred             cCCcCcccCChhhhhccchhhhhhhcc-----------------------------------------------------
Q 040815           80 SNNRFSGNLPSKSFLCWNAMKIVNARR-----------------------------------------------------  106 (305)
Q Consensus        80 ~~n~l~g~~p~~~~~~l~~L~~l~l~~-----------------------------------------------------  106 (305)
                      .+|.+. .++...|..+.+++.+++-.                                                     
T Consensus       172 yDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~es  250 (498)
T KOG4237|consen  172 YDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLES  250 (498)
T ss_pred             cchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHh
Confidence            888887 77777777777776665321                                                     


Q ss_pred             ---------------ccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCC
Q 040815          107 ---------------MMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLS  171 (305)
Q Consensus       107 ---------------~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  171 (305)
                                     +...++.+++|+.|+|++|.++++-+.+|..+.++++|.|..|++...-...|.++..|+.|+|.
T Consensus       251 l~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~  330 (498)
T KOG4237|consen  251 LPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLY  330 (498)
T ss_pred             HHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeec
Confidence                           11123447889999999999999999999999999999999999986666789999999999999


Q ss_pred             CCcCCccCccccccCCCCCEEeccCCcccCC
Q 040815          172 NKKFAGRIPQQLVELTFLEFFNVSDNYLTGP  202 (305)
Q Consensus       172 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  202 (305)
                      +|+|+..-|..|..+.+|.+|++-.|++.+.
T Consensus       331 ~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  331 DNQITTVAPGAFQTLFSLSTLNLLSNPFNCN  361 (498)
T ss_pred             CCeeEEEecccccccceeeeeehccCcccCc
Confidence            9999999999999999999999999998654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.69  E-value=1.1e-16  Score=152.85  Aligned_cols=199  Identities=21%  Similarity=0.309  Sum_probs=115.4

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccC-------------------CCCCCEEEccCccCCccc
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGT-------------------LPKLNVLILRSNIFYGVI   62 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-------------------l~~L~~L~L~~n~l~~~~   62 (305)
                      .|+|++|+|+ .+|..+.  ++|++|++++|+++ .+|..+..                   ..+|+.|++++|+++.+ 
T Consensus       203 ~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~L-  277 (754)
T PRK15370        203 TLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKISCL-  277 (754)
T ss_pred             EEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhhccccEEECcCCccCcCChhHhCCCCEEECcCCccCcc-
Confidence            5667777776 4454432  35566666655554 23332210                   13566666666666532 


Q ss_pred             CCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccc--c-CcccccccEEEccCCccccccchhhhCCC
Q 040815           63 EEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMT--Y-NKIPDILAGIILSNNRFVGAIPASIANLK  139 (305)
Q Consensus        63 ~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~--~-~~~~~~L~~L~ls~n~l~~~~p~~~~~l~  139 (305)
                      |..+    .++|+.|++++|+++ .+|....   .+|+.|++..+..  + ...+++|+.|++++|.++ .+|..+.  +
T Consensus       278 P~~l----~~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~  346 (754)
T PRK15370        278 PENL----PEELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPASLP--P  346 (754)
T ss_pred             cccc----CCCCcEEECCCCccc-cCcccch---hhHHHHHhcCCccccCCccccccceeccccCCccc-cCChhhc--C
Confidence            3222    246777777777776 5664321   3566666554221  1 123456778888888877 4665553  5


Q ss_pred             CCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-----CCCCccCC
Q 040815          140 GLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-----KQFATFDN  214 (305)
Q Consensus       140 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-----~~~~~l~~  214 (305)
                      +|+.|++++|+++ .+|..+.  ++|++|++++|.++ .+|..+.  ..|+.|++++|+++ .+|..     ...+.+..
T Consensus       347 sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~  419 (754)
T PRK15370        347 ELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTR  419 (754)
T ss_pred             cccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccE
Confidence            7888888888877 4565543  57888888888887 5565543  35777888888887 44432     11233445


Q ss_pred             CccCCCCCC
Q 040815          215 TSFDGNSGL  223 (305)
Q Consensus       215 ~~~~~n~~~  223 (305)
                      +.+.+||..
T Consensus       420 L~L~~Npls  428 (754)
T PRK15370        420 IIVEYNPFS  428 (754)
T ss_pred             EEeeCCCcc
Confidence            566677653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.68  E-value=3.5e-16  Score=148.78  Aligned_cols=56  Identities=21%  Similarity=0.295  Sum_probs=29.4

Q ss_pred             CCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCCC
Q 040815          164 NLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLC  224 (305)
Q Consensus       164 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c  224 (305)
                      +|+.|++++|.++ .+|..   ..+|+.|++++|+++ .+|.. ..+..+..+.+.+|+...
T Consensus       403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence            4455555555554 23432   124555666666665 44432 334556666777887643

>PLN03210 Resistant to P

Probab=99.68  E-value=4.2e-16  Score=157.39  Aligned_cols=189  Identities=19%  Similarity=0.164  Sum_probs=95.7

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN   81 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~   81 (305)
                      +|+|++|++. .++..+..+++|+.|+|+++.....+|. +..+++|++|+|++|.....+|..+  ..+++|+.|++++
T Consensus       615 ~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si--~~L~~L~~L~L~~  690 (1153)
T PLN03210        615 KLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSI--QYLNKLEDLDMSR  690 (1153)
T ss_pred             EEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhh--hccCCCCEEeCCC
Confidence            4555555555 4455555556666666655443334442 4555566666666554433344333  5556666666665


Q ss_pred             CcCcccCChhhhhccchhhhhhhcccccc---CcccccccEEEccCCccccccchhhh----------------------
Q 040815           82 NRFSGNLPSKSFLCWNAMKIVNARRMMTY---NKIPDILAGIILSNNRFVGAIPASIA----------------------  136 (305)
Q Consensus        82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~~---~~~~~~L~~L~ls~n~l~~~~p~~~~----------------------  136 (305)
                      |.....+|...  ++++|+.|+++++...   ...+.+|++|++++|.+. .+|..+.                      
T Consensus       691 c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~  767 (1153)
T PLN03210        691 CENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQ  767 (1153)
T ss_pred             CCCcCccCCcC--CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhcccccc
Confidence            44333555432  4555555555543222   222345666677666655 4443320                      


Q ss_pred             --------CCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCc
Q 040815          137 --------NLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNY  198 (305)
Q Consensus       137 --------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~  198 (305)
                              ..++|+.|+|++|...+.+|.+++++++|+.|++++|...+.+|..+ .+++|+.|++++|.
T Consensus       768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~  836 (1153)
T PLN03210        768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS  836 (1153)
T ss_pred             ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence                    11244555555554444555555555555555555543333444433 45555555555543

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.65  E-value=3.2e-16  Score=149.67  Aligned_cols=197  Identities=23%  Similarity=0.329  Sum_probs=124.2

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN   81 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~   81 (305)
                      +|+++++.++ .+|..+.  ++|+.|+|++|.++ .+|..+.  .+|++|++++|.++.+ |..+    ...|+.|+|++
T Consensus       182 ~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsL-P~~l----~~~L~~L~Ls~  250 (754)
T PRK15370        182 ELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSI-PATL----PDTIQEMELSI  250 (754)
T ss_pred             EEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccC-Chhh----hccccEEECcC
Confidence            6899999999 5777653  68999999999998 4676553  5899999999999865 3322    24788888888


Q ss_pred             CcCcccCChhhhhccchhhhhhhccccc--cC-cccccccEEEccCCccccccchhhhC-------------------CC
Q 040815           82 NRFSGNLPSKSFLCWNAMKIVNARRMMT--YN-KIPDILAGIILSNNRFVGAIPASIAN-------------------LK  139 (305)
Q Consensus        82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~--~~-~~~~~L~~L~ls~n~l~~~~p~~~~~-------------------l~  139 (305)
                      |++. .+|....   .+|+.|+++.+..  +. ..++.|+.|++++|.++ .+|..+..                   .+
T Consensus       251 N~L~-~LP~~l~---s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~  325 (754)
T PRK15370        251 NRIT-ELPERLP---SALQSLDLFHNKISCLPENLPEELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPP  325 (754)
T ss_pred             CccC-cCChhHh---CCCCEEECcCCccCccccccCCCCcEEECCCCccc-cCcccchhhHHHHHhcCCccccCCccccc
Confidence            8888 7886543   3566666654211  11 12456778888888777 34433220                   13


Q ss_pred             CCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCC
Q 040815          140 GLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDG  219 (305)
Q Consensus       140 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~  219 (305)
                      +|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+  .++|+.|++++|.++. +|.. ....+..+++.+
T Consensus       326 sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~-LP~~-l~~sL~~LdLs~  397 (754)
T PRK15370        326 GLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN-LPEN-LPAALQIMQASR  397 (754)
T ss_pred             cceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC-CCHh-HHHHHHHHhhcc
Confidence            45555666665553 444332  56777777777766 455544  2467777777777763 3432 112344444555


Q ss_pred             CCC
Q 040815          220 NSG  222 (305)
Q Consensus       220 n~~  222 (305)
                      |..
T Consensus       398 N~L  400 (754)
T PRK15370        398 NNL  400 (754)
T ss_pred             CCc
Confidence            543

>PLN03210 Resistant to P

Probab=99.65  E-value=2.8e-15  Score=151.44  Aligned_cols=213  Identities=21%  Similarity=0.255  Sum_probs=128.4

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEc-
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL-   79 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L-   79 (305)
                      ++|+|+++...+.+| .+..+++|+.|+|++|.....+|..++.+++|+.|++++|..-..+|...   .+++|+.|++ 
T Consensus       637 k~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Ls  712 (1153)
T PLN03210        637 RNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLS  712 (1153)
T ss_pred             CEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCC
Confidence            467887765444566 46777888888888776656777778888888888888764333333322   3444555554 


Q ss_pred             --------------------cCCcCcccCChhhhhccchhhhhhhcccc-------------ccCcccccccEEEccCCc
Q 040815           80 --------------------SNNRFSGNLPSKSFLCWNAMKIVNARRMM-------------TYNKIPDILAGIILSNNR  126 (305)
Q Consensus        80 --------------------~~n~l~g~~p~~~~~~l~~L~~l~l~~~~-------------~~~~~~~~L~~L~ls~n~  126 (305)
                                          ++|.+. .+|...  .+++|..|++....             .....++.|+.|++++|.
T Consensus       713 gc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~  789 (1153)
T PLN03210        713 GCSRLKSFPDISTNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP  789 (1153)
T ss_pred             CCCCccccccccCCcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhhhhccccchheeCCCCC
Confidence                                444444 444321  34455555443310             011124678999999998


Q ss_pred             cccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCC---------------------CcCCccCcccccc
Q 040815          127 FVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN---------------------KKFAGRIPQQLVE  185 (305)
Q Consensus       127 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~---------------------N~l~~~~p~~~~~  185 (305)
                      ..+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++                     |.++ .+|..+..
T Consensus       790 ~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~  867 (1153)
T PLN03210        790 SLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEK  867 (1153)
T ss_pred             CccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhc
Confidence            777899999999999999999875444666544 445555555554                     4444 45555666


Q ss_pred             CCCCCEEeccC-CcccCCCCCCCCCCccCCCccCCCCC
Q 040815          186 LTFLEFFNVSD-NYLTGPIPQGKQFATFDNTSFDGNSG  222 (305)
Q Consensus       186 l~~L~~L~l~~-N~l~~~~p~~~~~~~l~~~~~~~n~~  222 (305)
                      +++|+.|++++ |++.+..+....+..+..+.+.+++.
T Consensus       868 l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        868 FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             CCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence            66666666665 44543322223344454455555443

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.58  E-value=3.8e-16  Score=137.00  Aligned_cols=200  Identities=23%  Similarity=0.159  Sum_probs=115.5

Q ss_pred             CEEEccCCccc------cccchhccCCCCCcEEeCCCcccCCCcChhccCCCC---CCEEEccCccCCcccCCC--CCCC
Q 040815            1 MEAKRSHNLFE------GRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPK---LNVLILRSNIFYGVIEEP--RTGC   69 (305)
Q Consensus         1 ~~L~Ls~n~l~------~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~---L~~L~L~~n~l~~~~~~~--~~~~   69 (305)
                      ++|+++++.+.      ..++..+..+++|++|++++|.+.+..+..+..+.+   |++|++++|.+.......  ..+.
T Consensus        54 ~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~  133 (319)
T cd00116          54 KELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK  133 (319)
T ss_pred             eEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH
Confidence            35788888776      234567778899999999999997666666665555   999999999886311111  0113


Q ss_pred             CC-CCccEEEccCCcCcccCChh---hhhccchhhhhhhcccccc-------C---cccccccEEEccCCccccc----c
Q 040815           70 GF-SKLRIIDLSNNRFSGNLPSK---SFLCWNAMKIVNARRMMTY-------N---KIPDILAGIILSNNRFVGA----I  131 (305)
Q Consensus        70 ~l-~~L~~L~L~~n~l~g~~p~~---~~~~l~~L~~l~l~~~~~~-------~---~~~~~L~~L~ls~n~l~~~----~  131 (305)
                      .+ ++|+.|++++|.+++.....   .+..+..|+.|++..+.-.       .   ...+.|+.|++++|.+++.    +
T Consensus       134 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  213 (319)
T cd00116         134 DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL  213 (319)
T ss_pred             hCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHH
Confidence            45 78999999999988432222   2333345555554432110       0   0123566666666665432    2


Q ss_pred             chhhhCCCCCCEEecCCccccccCCcccc-----CCCCCCEEeCCCCcCCc----cCccccccCCCCCEEeccCCccc
Q 040815          132 PASIANLKGLQVLNLQYNNLQGLIPSSLG-----NLTNLESLDLSNKKFAG----RIPQQLVELTFLEFFNVSDNYLT  200 (305)
Q Consensus       132 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~  200 (305)
                      +..+..+++|++|++++|.+++.....+.     ..+.|++|++++|.++.    .+...+..+++|+++++++|.++
T Consensus       214 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         214 AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            23344555666666666665532221111     12566666666666652    22333444556666666666665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.57  E-value=4.9e-16  Score=145.21  Aligned_cols=109  Identities=28%  Similarity=0.472  Sum_probs=83.2

Q ss_pred             CCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCC
Q 040815           69 CGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQY  148 (305)
Q Consensus        69 ~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~  148 (305)
                      .+++.|+.|+|++|++. ++|+..+.++..|+.|+                  ||+|.++ .+|+.+..+..|++|....
T Consensus       380 ~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~------------------LSGNkL~-~Lp~tva~~~~L~tL~ahs  439 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELN------------------LSGNKLT-TLPDTVANLGRLHTLRAHS  439 (1081)
T ss_pred             ccccceeeeeecccccc-cCCHHHHhchHHhHHHh------------------cccchhh-hhhHHHHhhhhhHHHhhcC
Confidence            45667777777777776 77776666655555554                  8999998 8888899999999999999


Q ss_pred             ccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcc
Q 040815          149 NNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYL  199 (305)
Q Consensus       149 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l  199 (305)
                      |++. ..| .+..++.|+.+|++.|.++...-......++|++||+++|.-
T Consensus       440 N~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  440 NQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             Ccee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            9988 667 588899999999999988854333333347899999999873

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.56  E-value=8.7e-16  Score=134.72  Aligned_cols=198  Identities=20%  Similarity=0.119  Sum_probs=110.3

Q ss_pred             CEEEccCCccccc----cchhccCCCCCcEEeCCCcccCC------CcChhccCCCCCCEEEccCccCCcccCCCCCCCC
Q 040815            1 MEAKRSHNLFEGR----IPRSLINCSKLEFLGLGNYQISD------TFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCG   70 (305)
Q Consensus         1 ~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~   70 (305)
                      ++|+++++.++..    ++..+...+++++++++++.+.+      .++..+..+++|+.|++++|.+....+..+  ..
T Consensus        26 ~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~  103 (319)
T cd00116          26 QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL--ES  103 (319)
T ss_pred             cEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH--HH
Confidence            5789999998643    56677788899999999998862      234567788999999999999875433222  23


Q ss_pred             C---CCccEEEccCCcCcccCChh---hhhcc-chhhhhhhcccccc----------CcccccccEEEccCCccccc---
Q 040815           71 F---SKLRIIDLSNNRFSGNLPSK---SFLCW-NAMKIVNARRMMTY----------NKIPDILAGIILSNNRFVGA---  130 (305)
Q Consensus        71 l---~~L~~L~L~~n~l~g~~p~~---~~~~l-~~L~~l~l~~~~~~----------~~~~~~L~~L~ls~n~l~~~---  130 (305)
                      +   ++|+.|++++|++.+.-...   .+..+ ++|+.+++.++...          ...+..|+.|++++|.+++.   
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  183 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR  183 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence            3   45999999999987311111   12233 44455554432111          01123455555555555421   


Q ss_pred             -cchhhhCCCCCCEEecCCcccccc----CCccccCCCCCCEEeCCCCcCCccCcccccc-----CCCCCEEeccCCccc
Q 040815          131 -IPASIANLKGLQVLNLQYNNLQGL----IPSSLGNLTNLESLDLSNKKFAGRIPQQLVE-----LTFLEFFNVSDNYLT  200 (305)
Q Consensus       131 -~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~L~l~~N~l~  200 (305)
                       ++..+..+++|+.|++++|.+++.    ++..+..+++|++|++++|.+++.....+..     .+.|++|++++|.++
T Consensus       184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence             222233344555555555555422    1222334455555555555554322111111     245555555555553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.49  E-value=9.7e-16  Score=136.52  Aligned_cols=171  Identities=29%  Similarity=0.418  Sum_probs=136.9

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN   81 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~   81 (305)
                      ..||+.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++..|++|||+.|+++.. |...  +.+ -|+.|-+++
T Consensus        79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~l-p~~l--C~l-pLkvli~sN  152 (722)
T KOG0532|consen   79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHL-PDGL--CDL-PLKVLIVSN  152 (722)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcC-Chhh--hcC-cceeEEEec
Confidence            3688899988 88888888889999999999884 7888889999999999999998754 3333  444 488899999


Q ss_pred             CcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccC
Q 040815           82 NRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGN  161 (305)
Q Consensus        82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  161 (305)
                      |+++ .+|++ ++..                  ..|..||.+.|.+. .+|..++.+.+|+.|++..|++. .+|..+..
T Consensus       153 Nkl~-~lp~~-ig~~------------------~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~  210 (722)
T KOG0532|consen  153 NKLT-SLPEE-IGLL------------------PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS  210 (722)
T ss_pred             Cccc-cCCcc-cccc------------------hhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC
Confidence            9998 88876 3333                  34555668888887 77888888888999999988888 56666764


Q ss_pred             CCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCC
Q 040815          162 LTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGP  202 (305)
Q Consensus       162 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  202 (305)
                      + .|..||+|.|+++ .+|-.|..|+.|++|-|.+|+++.+
T Consensus       211 L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  211 L-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             C-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence            4 4888999999988 8888899999999999999988743

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.38  E-value=6.6e-13  Score=120.07  Aligned_cols=192  Identities=31%  Similarity=0.431  Sum_probs=114.8

Q ss_pred             EEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCC-CCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815            3 AKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLP-KLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN   81 (305)
Q Consensus         3 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~   81 (305)
                      |+++.|.+.. ....+..++.++.|++.+|.++. ++.....+. +|+.|++++|.+.... ...  ..+++|+.|++++
T Consensus        98 l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~--~~l~~L~~L~l~~  172 (394)
T COG4886          98 LDLNLNRLRS-NISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESLP-SPL--RNLPNLKNLDLSF  172 (394)
T ss_pred             eecccccccc-CchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchhhhh-hhh--hccccccccccCC
Confidence            4455555432 22233444666666666666653 444444443 6666666666665331 122  4566666666666


Q ss_pred             CcCcccCChhhhhccchhhhhhhcccc--ccC---cccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC
Q 040815           82 NRFSGNLPSKSFLCWNAMKIVNARRMM--TYN---KIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP  156 (305)
Q Consensus        82 n~l~g~~p~~~~~~l~~L~~l~l~~~~--~~~---~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  156 (305)
                      |+++ .+|.. ....+.|+.|++++..  ...   ..+..|+++++++|.+. ..+..+..+..+..+.+++|++. .++
T Consensus       173 N~l~-~l~~~-~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~  248 (394)
T COG4886         173 NDLS-DLPKL-LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP  248 (394)
T ss_pred             chhh-hhhhh-hhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence            6666 55543 2244444444444311  111   12444777778888544 55666777778888888888876 346


Q ss_pred             ccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC
Q 040815          157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ  205 (305)
Q Consensus       157 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  205 (305)
                      ..++.+++++.|++++|.++ .++. +..+.+++.|++++|.+....|.
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             chhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence            66777888888888888887 4444 77778888888888888765554

>PLN03150 hypothetical protein; Provisional

Probab=99.37  E-value=2.3e-12  Score=122.36  Aligned_cols=113  Identities=35%  Similarity=0.533  Sum_probs=99.7

Q ss_pred             CccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccc
Q 040815           73 KLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQ  152 (305)
Q Consensus        73 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  152 (305)
                      .++.|+|++|.+.|.+|.. +..                  ++.|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~-i~~------------------L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ls  479 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPND-ISK------------------LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN  479 (623)
T ss_pred             EEEEEECCCCCccccCCHH-HhC------------------CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCC
Confidence            4788999999999999975 443                  456788889999999999999999999999999999999


Q ss_pred             ccCCccccCCCCCCEEeCCCCcCCccCccccccC-CCCCEEeccCCcccCCCC
Q 040815          153 GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVEL-TFLEFFNVSDNYLTGPIP  204 (305)
Q Consensus       153 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p  204 (305)
                      |.+|..++++++|+.|+|++|.++|.+|..+... .++..+++.+|...+..|
T Consensus       480 g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            9999999999999999999999999999988764 467789999998766544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.35  E-value=1.5e-12  Score=117.70  Aligned_cols=188  Identities=28%  Similarity=0.318  Sum_probs=147.7

Q ss_pred             EEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCC-CccEEEccCCcCcccCChhhhhccchhhhhhh
Q 040815           26 FLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFS-KLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNA  104 (305)
Q Consensus        26 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l  104 (305)
                      .++++.|.+.. ....+..++.++.|++.+|.++.+.+..   ..+. +|+.|++++|.+. .+|.. ...++.|+.|++
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~i~~~~---~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l  170 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITDIPPLI---GLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDL  170 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCcccccCcccc---ccchhhcccccccccchh-hhhhh-hhcccccccccc
Confidence            58888888743 3344566789999999999998765443   3453 8999999999999 87633 788999999998


Q ss_pred             cccc--ccCc---ccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccC
Q 040815          105 RRMM--TYNK---IPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRI  179 (305)
Q Consensus       105 ~~~~--~~~~---~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  179 (305)
                      ..+.  ....   ..+.|+.|++++|.++ .+|..+.....|+++.+++|.+. ..+..+..+.++..+.+.+|++. .+
T Consensus       171 ~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~  247 (394)
T COG4886         171 SFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL  247 (394)
T ss_pred             CCchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence            7632  1221   5778999999999998 78877767777999999999655 46677889999999999999987 44


Q ss_pred             ccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCC
Q 040815          180 PQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL  223 (305)
Q Consensus       180 p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~  223 (305)
                      +..+..++.++.|++++|.++ .++....+..+..+++.+|...
T Consensus       248 ~~~~~~l~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         248 PESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cchhccccccceecccccccc-ccccccccCccCEEeccCcccc
Confidence            677888999999999999998 5554666777888888887654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.34  E-value=1.6e-14  Score=128.90  Aligned_cols=191  Identities=26%  Similarity=0.391  Sum_probs=155.1

Q ss_pred             EEccCCccccccch--hccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            3 AKRSHNLFEGRIPR--SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         3 L~Ls~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      |.|++-++. .+|.  +=.++..-...||+.|++. ++|..+..+..|..+.|..|.+..+ |...  +.+..|+++||+
T Consensus        55 l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~i-p~~i--~~L~~lt~l~ls  129 (722)
T KOG0532|consen   55 LLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTI-PEAI--CNLEALTFLDLS  129 (722)
T ss_pred             cccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccceec-chhh--hhhhHHHHhhhc
Confidence            456666665 3432  2245666777899999995 7898888888999999999998744 4444  889999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG  160 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  160 (305)
                      .|+++ .+|..++.                    --|+.|.+++|+++ .+|+.++.+..|..||.+.|.+. .+|..++
T Consensus       130 ~NqlS-~lp~~lC~--------------------lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~  186 (722)
T KOG0532|consen  130 SNQLS-HLPDGLCD--------------------LPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG  186 (722)
T ss_pred             cchhh-cCChhhhc--------------------CcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh
Confidence            99999 88876442                    13788889999998 89999998899999999999999 6788899


Q ss_pred             CCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC-CCCCCccCCCccCCCCCCC
Q 040815          161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSFDGNSGLC  224 (305)
Q Consensus       161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c  224 (305)
                      .+.+|+.|.+..|++. .+|..+..++ |..||+++|+++ .+|. ...+..+..+.++.||...
T Consensus       187 ~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  187 YLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            9999999999999998 7788888776 999999999999 5554 4666778888899998643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=4.2e-12  Score=110.32  Aligned_cols=182  Identities=22%  Similarity=0.244  Sum_probs=101.8

Q ss_pred             hccCCCCCcEEeCCCcccCCC--cChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhh
Q 040815           17 SLINCSKLEFLGLGNYQISDT--FPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFL   94 (305)
Q Consensus        17 ~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~   94 (305)
                      ....|++++.|||+.|-+...  +......+++|+.|+|+.|++........ ...++.|+.|.|+.|.++..--..+..
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-~~~l~~lK~L~l~~CGls~k~V~~~~~  219 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-TLLLSHLKQLVLNSCGLSWKDVQWILL  219 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-hhhhhhhheEEeccCCCCHHHHHHHHH
Confidence            445677888888888776633  22334567788888888887754332222 135677788888888777322223345


Q ss_pred             ccchhhhhhhccccc------cCcccccccEEEccCCccccccc--hhhhCCCCCCEEecCCcccccc-CCcc-----cc
Q 040815           95 CWNAMKIVNARRMMT------YNKIPDILAGIILSNNRFVGAIP--ASIANLKGLQVLNLQYNNLQGL-IPSS-----LG  160 (305)
Q Consensus        95 ~l~~L~~l~l~~~~~------~~~~~~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~-~p~~-----~~  160 (305)
                      .+++|+.|++..+..      ....+..|++|||++|.+. ..+  ...+.++.|..|+++.+.+... .|+.     ..
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~  298 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH  298 (505)
T ss_pred             hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence            566666666655321      1123455666666666654 222  3345566666666666665522 1221     12


Q ss_pred             CCCCCCEEeCCCCcCCc-cCccccccCCCCCEEeccCCccc
Q 040815          161 NLTNLESLDLSNKKFAG-RIPQQLVELTFLEFFNVSDNYLT  200 (305)
Q Consensus       161 ~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~  200 (305)
                      ..++|++|+++.|++.. ..-..+..+++|+.|.+..|.++
T Consensus       299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            34566666666666631 11123444555666666666665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.22  E-value=1.3e-11  Score=97.48  Aligned_cols=77  Identities=29%  Similarity=0.350  Sum_probs=28.7

Q ss_pred             ccEEEccCCccccccchhh-hCCCCCCEEecCCccccccC-CccccCCCCCCEEeCCCCcCCccC---ccccccCCCCCE
Q 040815          117 LAGIILSNNRFVGAIPASI-ANLKGLQVLNLQYNNLQGLI-PSSLGNLTNLESLDLSNKKFAGRI---PQQLVELTFLEF  191 (305)
Q Consensus       117 L~~L~ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~  191 (305)
                      |+.|++++|.++ .+.+.+ ..+++|++|+|++|+|...- -..+..+++|++|+|.+|.++..-   ...+..+|+|+.
T Consensus        66 L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~  144 (175)
T PF14580_consen   66 LKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV  144 (175)
T ss_dssp             --EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred             hhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence            333444444444 222222 24566666777666665311 123556677777777777766321   124566788887


Q ss_pred             Eec
Q 040815          192 FNV  194 (305)
Q Consensus       192 L~l  194 (305)
                      ||-
T Consensus       145 LD~  147 (175)
T PF14580_consen  145 LDG  147 (175)
T ss_dssp             ETT
T ss_pred             eCC
Confidence            764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.22  E-value=1.2e-11  Score=97.66  Aligned_cols=137  Identities=33%  Similarity=0.339  Sum_probs=41.4

Q ss_pred             ccCCccccccchhccCCCCCcEEeCCCcccCCCcChhcc-CCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCc
Q 040815            5 RSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLG-TLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR   83 (305)
Q Consensus         5 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~   83 (305)
                      |..+.|. ..+ .+.+...+++|+|++|.|+.+  +.++ .+.+|+.|+|++|.|+.+.  .  +..++.|+.|++++|+
T Consensus         4 lt~~~i~-~~~-~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~--~--l~~L~~L~~L~L~~N~   75 (175)
T PF14580_consen    4 LTANMIE-QIA-QYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE--G--LPGLPRLKTLDLSNNR   75 (175)
T ss_dssp             ------------------------------------S--TT-TT--EEE-TTS--S--T--T------TT--EEE--SS-
T ss_pred             ccccccc-ccc-ccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc--C--ccChhhhhhcccCCCC
Confidence            3444444 233 234555677788888877632  2344 4677788888888777553  1  2457778888888887


Q ss_pred             CcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCcccccc-chhhhCCCCCCEEecCCccccccCCc----c
Q 040815           84 FSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAI-PASIANLKGLQVLNLQYNNLQGLIPS----S  158 (305)
Q Consensus        84 l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~----~  158 (305)
                      ++ .+.+.....                  ++.|++|++++|.+...- -..+..+++|+.|+|.+|.++.. +.    .
T Consensus        76 I~-~i~~~l~~~------------------lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~v  135 (175)
T PF14580_consen   76 IS-SISEGLDKN------------------LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFV  135 (175)
T ss_dssp             ---S-CHHHHHH-------------------TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHH
T ss_pred             CC-ccccchHHh------------------CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHH
Confidence            77 565432222                  345666667777776321 13456677788888888877632 32    2


Q ss_pred             ccCCCCCCEEe
Q 040815          159 LGNLTNLESLD  169 (305)
Q Consensus       159 ~~~l~~L~~L~  169 (305)
                      +..+|+|+.||
T Consensus       136 i~~lP~Lk~LD  146 (175)
T PF14580_consen  136 IYKLPSLKVLD  146 (175)
T ss_dssp             HHH-TT-SEET
T ss_pred             HHHcChhheeC
Confidence            45677777777

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.16  E-value=3.4e-12  Score=106.18  Aligned_cols=134  Identities=27%  Similarity=0.277  Sum_probs=99.6

Q ss_pred             cCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEc
Q 040815           43 GTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIIL  122 (305)
Q Consensus        43 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~l  122 (305)
                      .....|++||||+|.|+.+. .+.  .-+|.++.|++|+|.+. .+..  .+                  .+++|+.|||
T Consensus       281 dTWq~LtelDLS~N~I~~iD-ESv--KL~Pkir~L~lS~N~i~-~v~n--La------------------~L~~L~~LDL  336 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQID-ESV--KLAPKLRRLILSQNRIR-TVQN--LA------------------ELPQLQLLDL  336 (490)
T ss_pred             chHhhhhhccccccchhhhh-hhh--hhccceeEEecccccee-eehh--hh------------------hcccceEeec
Confidence            34567888888888887542 222  55788888888888887 4432  11                  1456778888


Q ss_pred             cCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCcc-CccccccCCCCCEEeccCCcccC
Q 040815          123 SNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGR-IPQQLVELTFLEFFNVSDNYLTG  201 (305)
Q Consensus       123 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~  201 (305)
                      |+|.++ .+..+-..+-++++|.|+.|.+...  ..+.++-+|..||+++|+|... --..++++|.|+.+.|.+|++.+
T Consensus       337 S~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  337 SGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             ccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            888887 6667777788999999999988732  3477788899999999998742 23467889999999999999985


Q ss_pred             CC
Q 040815          202 PI  203 (305)
Q Consensus       202 ~~  203 (305)
                      .+
T Consensus       414 ~v  415 (490)
T KOG1259|consen  414 SV  415 (490)
T ss_pred             cc
Confidence            43

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.09  E-value=7.2e-11  Score=77.02  Aligned_cols=60  Identities=38%  Similarity=0.619  Sum_probs=33.7

Q ss_pred             CCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcc
Q 040815          140 GLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYL  199 (305)
Q Consensus       140 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l  199 (305)
                      +|++|++++|+++...+.+|..+++|++|++++|.++...|..|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455555555555544444555555555555555555544445555556666666655543

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.04  E-value=1.8e-10  Score=75.16  Aligned_cols=61  Identities=41%  Similarity=0.593  Sum_probs=56.1

Q ss_pred             ccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcC
Q 040815          115 DILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF  175 (305)
Q Consensus       115 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  175 (305)
                      ++|++|++++|.++...+..|..+++|++|++++|.++...|.+|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3689999999999966678899999999999999999988888999999999999999975

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.99  E-value=1e-10  Score=97.46  Aligned_cols=104  Identities=25%  Similarity=0.286  Sum_probs=70.5

Q ss_pred             cccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEe
Q 040815          114 PDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFN  193 (305)
Q Consensus       114 ~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  193 (305)
                      .+.++.|++|.|.+. .+. .+..+++|+.||||+|.++ .+.++-.++-+++.|.|++|.+..  -..+..+-+|..||
T Consensus       306 ~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLD  380 (490)
T KOG1259|consen  306 APKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLD  380 (490)
T ss_pred             ccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheecc
Confidence            566777778888776 332 2667777888888888777 445555567777788888887642  13456667788899


Q ss_pred             ccCCcccC--CCCCCCCCCccCCCccCCCCC
Q 040815          194 VSDNYLTG--PIPQGKQFATFDNTSFDGNSG  222 (305)
Q Consensus       194 l~~N~l~~--~~p~~~~~~~l~~~~~~~n~~  222 (305)
                      +++|++..  .+-..+.++.+..+.+.+||.
T Consensus       381 l~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  381 LSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             ccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            99998862  122234566677777788875

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=9.1e-11  Score=102.14  Aligned_cols=175  Identities=19%  Similarity=0.180  Sum_probs=119.7

Q ss_pred             CEEEccCCccccc--cchhccCCCCCcEEeCCCcccCCCcChhc-cCCCCCCEEEccCccCCcccCCCCCCCCCCCccEE
Q 040815            1 MEAKRSHNLFEGR--IPRSLINCSKLEFLGLGNYQISDTFPSWL-GTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII   77 (305)
Q Consensus         1 ~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L   77 (305)
                      +.||||+|-+..-  +-.-...|++|+.|+++.|.+.-...... ..+++|+.|.|+.|.++...-.. .+..+|+|+.|
T Consensus       149 ~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~-~~~~fPsl~~L  227 (505)
T KOG3207|consen  149 RDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQW-ILLTFPSLEVL  227 (505)
T ss_pred             eeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHH-HHHhCCcHHHh
Confidence            4689999988743  33445679999999999999864333222 25789999999999987322111 22568999999


Q ss_pred             EccCCcCcccCChhhhhccchhhhhhhccc--cccC-----cccccccEEEccCCccccc-cchh-----hhCCCCCCEE
Q 040815           78 DLSNNRFSGNLPSKSFLCWNAMKIVNARRM--MTYN-----KIPDILAGIILSNNRFVGA-IPAS-----IANLKGLQVL  144 (305)
Q Consensus        78 ~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~--~~~~-----~~~~~L~~L~ls~n~l~~~-~p~~-----~~~l~~L~~L  144 (305)
                      +|..|... .+.......+..|+.|+++++  ..+.     ..++.|..|.++.+.+... .|+.     ...+++|+.|
T Consensus       228 ~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L  306 (505)
T KOG3207|consen  228 YLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYL  306 (505)
T ss_pred             hhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceee
Confidence            99999533 222222556778888888763  2222     2366788888888887633 2322     3456899999


Q ss_pred             ecCCccccccCC--ccccCCCCCCEEeCCCCcCCcc
Q 040815          145 NLQYNNLQGLIP--SSLGNLTNLESLDLSNKKFAGR  178 (305)
Q Consensus       145 ~Ls~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~  178 (305)
                      +++.|++. ..+  ..+..+++|+.|.+..|.++.+
T Consensus       307 ~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  307 NISENNIR-DWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             ecccCccc-cccccchhhccchhhhhhccccccccc
Confidence            99999996 222  2355677888888889988744

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.85  E-value=6.1e-10  Score=94.53  Aligned_cols=198  Identities=19%  Similarity=0.179  Sum_probs=97.5

Q ss_pred             EEEccCCccccc----cchhccCCCCCcEEeCCCcc---cCCCcCh-------hccCCCCCCEEEccCccCCcccCCCC-
Q 040815            2 EAKRSHNLFEGR----IPRSLINCSKLEFLGLGNYQ---ISDTFPS-------WLGTLPKLNVLILRSNIFYGVIEEPR-   66 (305)
Q Consensus         2 ~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~---l~~~~p~-------~~~~l~~L~~L~L~~n~l~~~~~~~~-   66 (305)
                      +|+||+|.+...    +...+.+.+.|+..++++--   ....+|+       ++...++|++|+||+|.+.-..+..+ 
T Consensus        34 ~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~  113 (382)
T KOG1909|consen   34 KLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLE  113 (382)
T ss_pred             EEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHH
Confidence            578888877632    33445555666666665421   1122332       22344566666666666532211111 


Q ss_pred             -CCCCCCCccEEEccCCcCcccCChhhh-------------hccchhhhhhhccccc----------cCcccccccEEEc
Q 040815           67 -TGCGFSKLRIIDLSNNRFSGNLPSKSF-------------LCWNAMKIVNARRMMT----------YNKIPDILAGIIL  122 (305)
Q Consensus        67 -~~~~l~~L~~L~L~~n~l~g~~p~~~~-------------~~l~~L~~l~l~~~~~----------~~~~~~~L~~L~l  122 (305)
                       .+.++..|+.|+|.+|.+. ..-...+             ..-+.|+++...+++.          ..+..+.|+.+.+
T Consensus       114 ~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~  192 (382)
T KOG1909|consen  114 ELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRL  192 (382)
T ss_pred             HHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEE
Confidence             1134556666666666554 2221111             1112222222222111          1122345666666


Q ss_pred             cCCccccc----cchhhhCCCCCCEEecCCcccccc----CCccccCCCCCCEEeCCCCcCCccCcccc-----ccCCCC
Q 040815          123 SNNRFVGA----IPASIANLKGLQVLNLQYNNLQGL----IPSSLGNLTNLESLDLSNKKFAGRIPQQL-----VELTFL  189 (305)
Q Consensus       123 s~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L  189 (305)
                      ..|.+...    +...+..+++|++|||..|-|+..    +...+..+++|+.|++++|.+...-...+     ...|+|
T Consensus       193 ~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L  272 (382)
T KOG1909|consen  193 SQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSL  272 (382)
T ss_pred             ecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCC
Confidence            66665411    233455667777777777766532    22234455667777777766654333222     124666


Q ss_pred             CEEeccCCccc
Q 040815          190 EFFNVSDNYLT  200 (305)
Q Consensus       190 ~~L~l~~N~l~  200 (305)
                      +.+++.+|.++
T Consensus       273 ~vl~l~gNeIt  283 (382)
T KOG1909|consen  273 EVLELAGNEIT  283 (382)
T ss_pred             ceeccCcchhH
Confidence            77777777665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.85  E-value=1.7e-10  Score=106.23  Aligned_cols=109  Identities=24%  Similarity=0.347  Sum_probs=82.7

Q ss_pred             cccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCc-cccCCCCCCEEeCCCCcCCccCccccccCCCCC
Q 040815          112 KIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPS-SLGNLTNLESLDLSNKKFAGRIPQQLVELTFLE  190 (305)
Q Consensus       112 ~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  190 (305)
                      +.++.++.|+|++|+++. +. .+..++.|++|||++|.+. .+|. ....+. |+.|.+++|.++. + ..+.++.+|+
T Consensus       184 qll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-L-~gie~LksL~  257 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-L-RGIENLKSLY  257 (1096)
T ss_pred             HHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh-h-hhHHhhhhhh
Confidence            346778888999999983 33 7888999999999999998 4554 333444 9999999999873 3 2467899999


Q ss_pred             EEeccCCcccCCC--CCCCCCCccCCCccCCCCCCCCC
Q 040815          191 FFNVSDNYLTGPI--PQGKQFATFDNTSFDGNSGLCGK  226 (305)
Q Consensus       191 ~L~l~~N~l~~~~--p~~~~~~~l~~~~~~~n~~~c~~  226 (305)
                      .||+++|-+.+--  .....+..+..+.++|||..|..
T Consensus       258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            9999999887532  11233456677789999988854

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.84  E-value=8.6e-10  Score=100.30  Aligned_cols=93  Identities=24%  Similarity=0.295  Sum_probs=49.2

Q ss_pred             EccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCc
Q 040815            4 KRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR   83 (305)
Q Consensus         4 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~   83 (305)
                      .+..|.+. .+-..+..+++|+.|++.+|+|... ...+..+++|++|++++|.|+.+.+.    ..++.|+.|++++|.
T Consensus        78 ~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~  151 (414)
T KOG0531|consen   78 NLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNL  151 (414)
T ss_pred             ccchhhhh-hhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccch----hhccchhhheeccCc
Confidence            34445444 2223455666666666666666532 22245566666666666666554322    335556666666666


Q ss_pred             CcccCChhhhhccchhhhhhhc
Q 040815           84 FSGNLPSKSFLCWNAMKIVNAR  105 (305)
Q Consensus        84 l~g~~p~~~~~~l~~L~~l~l~  105 (305)
                      ++ .+..  +..+..|+.++++
T Consensus       152 i~-~~~~--~~~l~~L~~l~l~  170 (414)
T KOG0531|consen  152 IS-DISG--LESLKSLKLLDLS  170 (414)
T ss_pred             ch-hccC--CccchhhhcccCC
Confidence            66 4442  3334444444433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.77  E-value=8.3e-10  Score=100.41  Aligned_cols=79  Identities=23%  Similarity=0.261  Sum_probs=39.2

Q ss_pred             CCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchh
Q 040815           20 NCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAM   99 (305)
Q Consensus        20 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L   99 (305)
                      .+..++.+.+..|.+.. +-..+..+.+|..|++.+|.|..+...   +..+++|++|++++|.++ .+..  +..+..|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~---l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L  142 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENL---LSSLVNLQVLDLSFNKIT-KLEG--LSTLTLL  142 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccc---hhhhhcchheeccccccc-cccc--hhhccch
Confidence            34455555555555542 222344555666666666666544221   134566666666666665 3332  3334444


Q ss_pred             hhhhhc
Q 040815          100 KIVNAR  105 (305)
Q Consensus       100 ~~l~l~  105 (305)
                      +.|++.
T Consensus       143 ~~L~l~  148 (414)
T KOG0531|consen  143 KELNLS  148 (414)
T ss_pred             hhheec
Confidence            444443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.76  E-value=5.9e-09  Score=88.63  Aligned_cols=184  Identities=20%  Similarity=0.244  Sum_probs=132.7

Q ss_pred             hhccCCCCCcEEeCCCcccCCC----cChhccCCCCCCEEEccCccCCcccCCC---------CCCCCCCCccEEEccCC
Q 040815           16 RSLINCSKLEFLGLGNYQISDT----FPSWLGTLPKLNVLILRSNIFYGVIEEP---------RTGCGFSKLRIIDLSNN   82 (305)
Q Consensus        16 ~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~~~l~~L~~L~L~~n   82 (305)
                      +.+..+..+++++|++|.+...    +...+...++|+.-++++- ++|.....         ..+...++|+.+|||+|
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            3556789999999999999633    3344566788999888865 33332211         12245679999999999


Q ss_pred             cCcccCCh---hhhhccchhhhhhhcccc-------------------ccCcccccccEEEccCCccccc----cchhhh
Q 040815           83 RFSGNLPS---KSFLCWNAMKIVNARRMM-------------------TYNKIPDILAGIILSNNRFVGA----IPASIA  136 (305)
Q Consensus        83 ~l~g~~p~---~~~~~l~~L~~l~l~~~~-------------------~~~~~~~~L~~L~ls~n~l~~~----~p~~~~  136 (305)
                      .+.-.-+.   ..+.....|+.|++.++.                   ......+.|+.++.+.|++...    +...|.
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~  182 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ  182 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence            98733332   235667889999987621                   1122367899999999998632    345577


Q ss_pred             CCCCCCEEecCCcccccc----CCccccCCCCCCEEeCCCCcCCcc----CccccccCCCCCEEeccCCccc
Q 040815          137 NLKGLQVLNLQYNNLQGL----IPSSLGNLTNLESLDLSNKKFAGR----IPQQLVELTFLEFFNVSDNYLT  200 (305)
Q Consensus       137 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~  200 (305)
                      ..+.|+.+.++.|.|...    +-.++..+++|+.|||..|.++..    +...+..++.|+.|+++++.+.
T Consensus       183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence            788999999999988622    224577899999999999998753    3445677889999999999886

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.72  E-value=7.6e-10  Score=81.98  Aligned_cols=46  Identities=30%  Similarity=0.512  Sum_probs=19.7

Q ss_pred             ccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCC
Q 040815          130 AIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFA  176 (305)
Q Consensus       130 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  176 (305)
                      .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.||..+|.+.
T Consensus        91 dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   91 DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            33333444444444444444444 23333333444444444444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=1.6e-09  Score=90.27  Aligned_cols=175  Identities=20%  Similarity=0.150  Sum_probs=87.4

Q ss_pred             EEEccCCccccc-cchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCcc-CCcccCCCCCCCCCCCccEEEc
Q 040815            2 EAKRSHNLFEGR-IPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNI-FYGVIEEPRTGCGFSKLRIIDL   79 (305)
Q Consensus         2 ~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L   79 (305)
                      +||||+..|+.. +-..+..+..|+.|.|.++++.+.+...+..-.+|+.|+|+.+. ++. ......+.+++.|+.|++
T Consensus       189 ~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~-n~~~ll~~scs~L~~LNl  267 (419)
T KOG2120|consen  189 HLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE-NALQLLLSSCSRLDELNL  267 (419)
T ss_pred             HhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch-hHHHHHHHhhhhHhhcCc
Confidence            456666666522 33345556667777777777666666666666667777776653 111 000111245666777777


Q ss_pred             cCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCcc--c-cccchhhhCCCCCCEEecCCcc-ccccC
Q 040815           80 SNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRF--V-GAIPASIANLKGLQVLNLQYNN-LQGLI  155 (305)
Q Consensus        80 ~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l--~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~~  155 (305)
                      +.+.+..+.-..+...                 .-+.|..|++++..-  . ..+..-...+++|..||||.|. ++...
T Consensus       268 sWc~l~~~~Vtv~V~h-----------------ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~  330 (419)
T KOG2120|consen  268 SWCFLFTEKVTVAVAH-----------------ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC  330 (419)
T ss_pred             hHhhccchhhhHHHhh-----------------hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH
Confidence            7766553332222221                 122334444444321  1 0111122345666666666543 33222


Q ss_pred             CccccCCCCCCEEeCCCCcCCccCccc---cccCCCCCEEeccC
Q 040815          156 PSSLGNLTNLESLDLSNKKFAGRIPQQ---LVELTFLEFFNVSD  196 (305)
Q Consensus       156 p~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~l~~  196 (305)
                      -..|.+++-|++|.++.|-.  .+|..   +...|.|.+||+.+
T Consensus       331 ~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  331 FQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             HHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence            23355566666666666532  34443   34456677777653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.53  E-value=6.6e-09  Score=77.07  Aligned_cols=112  Identities=25%  Similarity=0.293  Sum_probs=84.4

Q ss_pred             CCCcEEeCCCcccCCCcChhc---cCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccch
Q 040815           22 SKLEFLGLGNYQISDTFPSWL---GTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNA   98 (305)
Q Consensus        22 ~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~   98 (305)
                      ..+..+||+++++- .+++..   .....|+..+|++|.+....+...  ..++.+++++|++|.++ ++|.+ +..++.
T Consensus        27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft--~kf~t~t~lNl~~neis-dvPeE-~Aam~a  101 (177)
T KOG4579|consen   27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFT--IKFPTATTLNLANNEIS-DVPEE-LAAMPA  101 (177)
T ss_pred             HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHh--hccchhhhhhcchhhhh-hchHH-HhhhHH
Confidence            45667889998883 455544   355678888999999976544333  45678999999999999 99988 777666


Q ss_pred             hhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcc
Q 040815           99 MKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSS  158 (305)
Q Consensus        99 L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  158 (305)
                      |+.++                  ++.|.+. ..|..+..+.++..|+..+|.+. .+|-.
T Consensus       102 Lr~lN------------------l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d  141 (177)
T KOG4579|consen  102 LRSLN------------------LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD  141 (177)
T ss_pred             hhhcc------------------cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence            55555                  8899988 77788888999999999999877 44443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.40  E-value=1.7e-07  Score=91.85  Aligned_cols=85  Identities=16%  Similarity=0.167  Sum_probs=44.7

Q ss_pred             hccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhcc
Q 040815           17 SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCW   96 (305)
Q Consensus        17 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l   96 (305)
                      .|..++.|+.|||++|.=.+.+|..++.+-+|++|+|++..+... |..+  ..+..|.+|++..+.....+ +.....+
T Consensus       566 ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~L-P~~l--~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L  641 (889)
T KOG4658|consen  566 FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHL-PSGL--GNLKKLIYLNLEVTGRLESI-PGILLEL  641 (889)
T ss_pred             HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcccc-chHH--HHHHhhheeccccccccccc-cchhhhc
Confidence            355566666666665544455666666666666666666655532 2222  55556666666555443222 2334445


Q ss_pred             chhhhhhhc
Q 040815           97 NAMKIVNAR  105 (305)
Q Consensus        97 ~~L~~l~l~  105 (305)
                      .+|++|.+.
T Consensus       642 ~~Lr~L~l~  650 (889)
T KOG4658|consen  642 QSLRVLRLP  650 (889)
T ss_pred             ccccEEEee
Confidence            555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=4.5e-07  Score=75.95  Aligned_cols=183  Identities=16%  Similarity=0.093  Sum_probs=106.1

Q ss_pred             CCCCCcEEeCCCcccCCC--cChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccc
Q 040815           20 NCSKLEFLGLGNYQISDT--FPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWN   97 (305)
Q Consensus        20 ~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~   97 (305)
                      ..+.++.+||.+|.|+..  +...+.++|.|++|+|+.|.+...+....  ....+|+.|-|.+..+...-.......++
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            356788888888888742  33345578888888888888865544332  34668888888877776555555566677


Q ss_pred             hhhhhhhcccc------c---cCcccccccEEEccCCcccc--ccchhhhCCCCCCEEecCCccccccC-CccccCCCCC
Q 040815           98 AMKIVNARRMM------T---YNKIPDILAGIILSNNRFVG--AIPASIANLKGLQVLNLQYNNLQGLI-PSSLGNLTNL  165 (305)
Q Consensus        98 ~L~~l~l~~~~------~---~~~~~~~L~~L~ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L  165 (305)
                      .++.++++.+.      +   ....-+.+++|....|....  .+..--.-.+++..+.+..|.+...- -..+...+.+
T Consensus       147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~  226 (418)
T KOG2982|consen  147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL  226 (418)
T ss_pred             hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence            77777655420      0   00111233333333332210  00000112356667777777665321 2335556677


Q ss_pred             CEEeCCCCcCCcc-CccccccCCCCCEEeccCCcccCCCC
Q 040815          166 ESLDLSNKKFAGR-IPQQLVELTFLEFFNVSDNYLTGPIP  204 (305)
Q Consensus       166 ~~L~L~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p  204 (305)
                      ..|+|+.|+|..- --+.+..++.|..|.+++|++..++-
T Consensus       227 ~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  227 SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             hhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence            7788888877531 12356677888888888887765443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.28  E-value=2e-08  Score=92.98  Aligned_cols=60  Identities=28%  Similarity=0.316  Sum_probs=28.9

Q ss_pred             CcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCC
Q 040815           24 LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLP   89 (305)
Q Consensus        24 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p   89 (305)
                      |...+.++|.+. ....++.-++.|+.|+|++|+++..-    .+..++.|++|||++|.+. .+|
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~----~Lr~l~~LkhLDlsyN~L~-~vp  225 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD----NLRRLPKLKHLDLSYNCLR-HVP  225 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH----HHHhcccccccccccchhc-ccc
Confidence            444455555553 34444444555555555555554331    1134555555555555554 444

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.18  E-value=8.5e-06  Score=72.53  Aligned_cols=135  Identities=15%  Similarity=0.202  Sum_probs=70.9

Q ss_pred             ccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCC-cCcccCChhhhhcc
Q 040815           18 LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNN-RFSGNLPSKSFLCW   96 (305)
Q Consensus        18 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~g~~p~~~~~~l   96 (305)
                      +..+.+++.|++++|.++ .+|.   -..+|+.|.++++.--...|..+    .++|+.|++++| .+. .+|..     
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~Cs~L~-sLP~s-----  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPEIS-GLPES-----  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh----hhhhhheEccCccccc-ccccc-----
Confidence            334677888888888775 4451   13368888887643222333322    247788888777 444 55543     


Q ss_pred             chhhhhhhcc--ccccCcccccccEEEccCCccc--cccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCC
Q 040815           97 NAMKIVNARR--MMTYNKIPDILAGIILSNNRFV--GAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN  172 (305)
Q Consensus        97 ~~L~~l~l~~--~~~~~~~~~~L~~L~ls~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  172 (305)
                        |+.|++..  ...+...|+.|+.|.+.+++..  ..+|..+  .++|+.|++++|... ..|..+.  .+|+.|+++.
T Consensus       114 --Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~  186 (426)
T PRK15386        114 --VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI  186 (426)
T ss_pred             --cceEEeCCCCCcccccCcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence              22222221  2233445566666666432211  0111111  146777777776655 3343332  4677777766


Q ss_pred             C
Q 040815          173 K  173 (305)
Q Consensus       173 N  173 (305)
                      |
T Consensus       187 n  187 (426)
T PRK15386        187 E  187 (426)
T ss_pred             c
Confidence            5

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.17  E-value=1.8e-06  Score=51.75  Aligned_cols=36  Identities=42%  Similarity=0.660  Sum_probs=17.0

Q ss_pred             CCCEEecCCccccccCCccccCCCCCCEEeCCCCcCC
Q 040815          140 GLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFA  176 (305)
Q Consensus       140 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  176 (305)
                      +|++|++++|+|+ .+|..+.++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4455555555555 23334555555555555555544

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.17  E-value=1.7e-06  Score=51.92  Aligned_cols=36  Identities=44%  Similarity=0.677  Sum_probs=18.1

Q ss_pred             CCCEEeCCCCcCCccCccccccCCCCCEEeccCCccc
Q 040815          164 NLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT  200 (305)
Q Consensus       164 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  200 (305)
                      +|++|++++|+|+ .+|..+..+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 34444555555555555555554

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.11  E-value=3.5e-06  Score=82.76  Aligned_cols=78  Identities=33%  Similarity=0.446  Sum_probs=35.7

Q ss_pred             ccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEecc
Q 040815          117 LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVS  195 (305)
Q Consensus       117 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~  195 (305)
                      |+.|||++|.--+.+|..++.+-+|+.|+|++..++ .+|..+.++..|.+||+..+.-...+|.....+++|++|.+.
T Consensus       573 LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  573 LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP  650 (889)
T ss_pred             eEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence            334444444333344555555555555555555444 444445555555555554443333333434444444444443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.11  E-value=1.2e-06  Score=72.51  Aligned_cols=193  Identities=20%  Similarity=0.186  Sum_probs=114.1

Q ss_pred             EEEccCCccccc----cchhccCCCCCcEEeCCCcccC---CCcCh-------hccCCCCCCEEEccCccCCcccCCCC-
Q 040815            2 EAKRSHNLFEGR----IPRSLINCSKLEFLGLGNYQIS---DTFPS-------WLGTLPKLNVLILRSNIFYGVIEEPR-   66 (305)
Q Consensus         2 ~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~---~~~p~-------~~~~l~~L~~L~L~~n~l~~~~~~~~-   66 (305)
                      ++|||+|.|...    +...+.+-.+|+..++++--..   ..+++       ++.+|++|+..+||.|.+....|... 
T Consensus        34 evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~  113 (388)
T COG5238          34 EVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELG  113 (388)
T ss_pred             EEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHH
Confidence            578888888744    3334555677777777764221   12232       34578889999999998865444321 


Q ss_pred             -CCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCcccccc----chhhhCCCCC
Q 040815           67 -TGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAI----PASIANLKGL  141 (305)
Q Consensus        67 -~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~----p~~~~~l~~L  141 (305)
                       .++.-+.|.+|.|++|.+- .+...-++.  .|..|-.+  ... ..-+.|+.++...|++..-.    ...+.....|
T Consensus       114 d~is~~t~l~HL~l~NnGlG-p~aG~rigk--al~~la~n--KKa-a~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l  187 (388)
T COG5238         114 DLISSSTDLVHLKLNNNGLG-PIAGGRIGK--ALFHLAYN--KKA-ADKPKLEVVICGRNRLENGSKELSAALLESHENL  187 (388)
T ss_pred             HHHhcCCCceeEEeecCCCC-ccchhHHHH--HHHHHHHH--hhh-ccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence             1245678889999988875 444333321  12222110  000 11456888888888875211    1223344578


Q ss_pred             CEEecCCccccccCC-----ccccCCCCCCEEeCCCCcCCcc----CccccccCCCCCEEeccCCccc
Q 040815          142 QVLNLQYNNLQGLIP-----SSLGNLTNLESLDLSNKKFAGR----IPQQLVELTFLEFFNVSDNYLT  200 (305)
Q Consensus       142 ~~L~Ls~N~l~~~~p-----~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~  200 (305)
                      +++.+..|.|...--     ..+..+.+|+.|||..|-++-.    +...+..++.|+.|.+.++.++
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            888888887652211     1123567888888888877632    2334556677788888777765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.00  E-value=1.1e-05  Score=64.02  Aligned_cols=125  Identities=22%  Similarity=0.216  Sum_probs=79.0

Q ss_pred             CcEEeCCCcccCCCcChhccC-CCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhh
Q 040815           24 LEFLGLGNYQISDTFPSWLGT-LPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIV  102 (305)
Q Consensus        24 L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l  102 (305)
                      =+.++|.+.++..  .+.++. +.+...+||++|.+....  .+  ..++.|.+|.|++|+++ .|.+..-.        
T Consensus        21 e~e~~LR~lkip~--ienlg~~~d~~d~iDLtdNdl~~l~--~l--p~l~rL~tLll~nNrIt-~I~p~L~~--------   85 (233)
T KOG1644|consen   21 ERELDLRGLKIPV--IENLGATLDQFDAIDLTDNDLRKLD--NL--PHLPRLHTLLLNNNRIT-RIDPDLDT--------   85 (233)
T ss_pred             ccccccccccccc--hhhccccccccceecccccchhhcc--cC--CCccccceEEecCCcce-eeccchhh--------
Confidence            4556666666532  112332 346777888888775442  22  45778888888888887 55543221        


Q ss_pred             hhccccccCcccccccEEEccCCccccccc--hhhhCCCCCCEEecCCccccccC---CccccCCCCCCEEeCCCCc
Q 040815          103 NARRMMTYNKIPDILAGIILSNNRFVGAIP--ASIANLKGLQVLNLQYNNLQGLI---PSSLGNLTNLESLDLSNKK  174 (305)
Q Consensus       103 ~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L~L~~N~  174 (305)
                                ..+.|..|.|.+|++. .+.  +-+..++.|+.|.+-+|.++..-   --.+..+++|+.||.+.=.
T Consensus        86 ----------~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   86 ----------FLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ----------hccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence                      2455677778888776 221  22557788999999898877321   1236678999999976543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=2.5e-07  Score=77.48  Aligned_cols=90  Identities=22%  Similarity=0.268  Sum_probs=60.1

Q ss_pred             cccccEEEccCCccccccch-hhhCC-CCCCEEecCCccc---cccCCccccCCCCCCEEeCCCC-cCCccCccccccCC
Q 040815          114 PDILAGIILSNNRFVGAIPA-SIANL-KGLQVLNLQYNNL---QGLIPSSLGNLTNLESLDLSNK-KFAGRIPQQLVELT  187 (305)
Q Consensus       114 ~~~L~~L~ls~n~l~~~~p~-~~~~l-~~L~~L~Ls~N~l---~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~  187 (305)
                      +..|.+|+++++.+....-. .+.+. +.|+.|+|++..-   ...+..-...+++|.+|||++| .++...-..|..++
T Consensus       259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~  338 (419)
T KOG2120|consen  259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN  338 (419)
T ss_pred             hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence            55677777999887644322 22222 5688999988532   1122222457899999999987 56655556778899


Q ss_pred             CCCEEeccCCcccCCCCC
Q 040815          188 FLEFFNVSDNYLTGPIPQ  205 (305)
Q Consensus       188 ~L~~L~l~~N~l~~~~p~  205 (305)
                      .|++|.++.+..  .+|+
T Consensus       339 ~L~~lSlsRCY~--i~p~  354 (419)
T KOG2120|consen  339 YLQHLSLSRCYD--IIPE  354 (419)
T ss_pred             hheeeehhhhcC--CChH
Confidence            999999987753  4554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.85  E-value=7.3e-05  Score=66.71  Aligned_cols=125  Identities=16%  Similarity=0.208  Sum_probs=82.8

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCc-cCCcccCCCCCCCCCCCccEEEc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSN-IFYGVIEEPRTGCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L   79 (305)
                      +.|++++|.|+ .+| .  -..+|+.|+++++.--..+|+.+  ..+|+.|++++| .+...         ...|+.|++
T Consensus        55 ~~L~Is~c~L~-sLP-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL---------P~sLe~L~L  119 (426)
T PRK15386         55 GRLYIKDCDIE-SLP-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL---------PESVRSLEI  119 (426)
T ss_pred             CEEEeCCCCCc-ccC-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc---------ccccceEEe
Confidence            46899999888 566 2  24579999998754334667644  358999999998 54322         245788888


Q ss_pred             cCCcCc--ccCChhhhhccchhhhhhhccc-----cc-cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcc
Q 040815           80 SNNRFS--GNLPSKSFLCWNAMKIVNARRM-----MT-YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNN  150 (305)
Q Consensus        80 ~~n~l~--g~~p~~~~~~l~~L~~l~l~~~-----~~-~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~  150 (305)
                      +.+...  +.+|.       +|+.|.+...     .. ....|++|+.|++++|... ..|..+.  .+|+.|+++.+.
T Consensus       120 ~~n~~~~L~~LPs-------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        120 KGSATDSIKNVPN-------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             CCCCCcccccCcc-------hHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence            876643  24554       3455554220     01 1135689999999998866 4555443  589999998763

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.69  E-value=6.3e-05  Score=59.85  Aligned_cols=87  Identities=23%  Similarity=0.268  Sum_probs=58.8

Q ss_pred             cccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCcc-CccccccCCCCC
Q 040815          112 KIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGR-IPQQLVELTFLE  190 (305)
Q Consensus       112 ~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~  190 (305)
                      ........+||++|.+. .+ +.|..++.|..|.|++|.|+..-|.--.-+++|..|.|.+|.|... .-+-+..+|+|+
T Consensus        39 ~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   39 ATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE  116 (233)
T ss_pred             ccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence            34556777888888775 22 3466677888888888888866555444567788888888877531 112355677888


Q ss_pred             EEeccCCccc
Q 040815          191 FFNVSDNYLT  200 (305)
Q Consensus       191 ~L~l~~N~l~  200 (305)
                      +|.+-+|+.+
T Consensus       117 ~Ltll~Npv~  126 (233)
T KOG1644|consen  117 YLTLLGNPVE  126 (233)
T ss_pred             eeeecCCchh
Confidence            8888877765

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=5.7e-06  Score=69.51  Aligned_cols=201  Identities=14%  Similarity=0.074  Sum_probs=104.8

Q ss_pred             CCCCcEEeCCCcccCCCcC-hhcc-CCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccch
Q 040815           21 CSKLEFLGLGNYQISDTFP-SWLG-TLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNA   98 (305)
Q Consensus        21 l~~L~~L~L~~n~l~~~~p-~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~   98 (305)
                      +..++.|-+.++.|...-. ..|+ ..+.++.|||.+|.|+...........+|.|++|+++.|.++..|... -....+
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l-p~p~~n  122 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL-PLPLKN  122 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC-cccccc
Confidence            3344455566665542211 1233 367899999999999764332223367999999999999998433321 012334


Q ss_pred             hhhhhhccc-------cccCcccccccEEEccCCcccccc--chhhhCC-CCCCEEecCCcccccc--CCccccCCCCCC
Q 040815           99 MKIVNARRM-------MTYNKIPDILAGIILSNNRFVGAI--PASIANL-KGLQVLNLQYNNLQGL--IPSSLGNLTNLE  166 (305)
Q Consensus        99 L~~l~l~~~-------~~~~~~~~~L~~L~ls~n~l~~~~--p~~~~~l-~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~  166 (305)
                      |+.+-+++.       ..+...++.+++|.+|.|++....  .+..... +.+.+|.+-.|...--  .-.--.-.+++.
T Consensus       123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~  202 (418)
T KOG2982|consen  123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN  202 (418)
T ss_pred             eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence            444444331       112222444555555555332100  0000001 1223333222221100  000001236677


Q ss_pred             EEeCCCCcCCcc-CccccccCCCCCEEeccCCcccCC--CCCCCCCCccCCCccCCCCC
Q 040815          167 SLDLSNKKFAGR-IPQQLVELTFLEFFNVSDNYLTGP--IPQGKQFATFDNTSFDGNSG  222 (305)
Q Consensus       167 ~L~L~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~--~p~~~~~~~l~~~~~~~n~~  222 (305)
                      .+.+..|.+... -......+|.+..|+|+.|++...  +.+...++.+..+....+|.
T Consensus       203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence            777777866532 223456678888999999988632  33335666777777777764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.56  E-value=0.0001  Score=61.40  Aligned_cols=171  Identities=18%  Similarity=0.154  Sum_probs=104.5

Q ss_pred             hccCCCCCcEEeCCCcccCCCcChhc----cCCCCCCEEEccCccCCcccCCCC-----------CCCCCCCccEEEccC
Q 040815           17 SLINCSKLEFLGLGNYQISDTFPSWL----GTLPKLNVLILRSNIFYGVIEEPR-----------TGCGFSKLRIIDLSN   81 (305)
Q Consensus        17 ~l~~l~~L~~L~L~~n~l~~~~p~~~----~~l~~L~~L~L~~n~l~~~~~~~~-----------~~~~l~~L~~L~L~~   81 (305)
                      ++.+|++|+..+||+|.+....|..+    +.-+.|..|.|++|.+.-....-+           .+.+-|.|++.+...
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            55689999999999999986666544    456889999999997742111111           124568999999999


Q ss_pred             CcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccc-----cchhhhCCCCCCEEecCCccccccCC
Q 040815           82 NRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGA-----IPASIANLKGLQVLNLQYNNLQGLIP  156 (305)
Q Consensus        82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~p  156 (305)
                      |++. .-|.......-.              .-..|+.+.+..|.|.-.     .-..+..+.+|+.|||..|-++-.-.
T Consensus       167 NRle-ngs~~~~a~~l~--------------sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS  231 (388)
T COG5238         167 NRLE-NGSKELSAALLE--------------SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS  231 (388)
T ss_pred             chhc-cCcHHHHHHHHH--------------hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH
Confidence            9987 444332111000              012355666666765421     11123346778888888887763322


Q ss_pred             ----ccccCCCCCCEEeCCCCcCCccCccccc------cCCCCCEEeccCCcccCC
Q 040815          157 ----SSLGNLTNLESLDLSNKKFAGRIPQQLV------ELTFLEFFNVSDNYLTGP  202 (305)
Q Consensus       157 ----~~~~~l~~L~~L~L~~N~l~~~~p~~~~------~l~~L~~L~l~~N~l~~~  202 (305)
                          .++...+.|+.|.+..|.++..-..++.      ..|+|..|-..+|...+.
T Consensus       232 ~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         232 RYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             HHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence                2233445677888888777654333221      246677777777766543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.56  E-value=0.00037  Score=52.27  Aligned_cols=62  Identities=19%  Similarity=0.276  Sum_probs=29.4

Q ss_pred             hhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815           16 RSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN   81 (305)
Q Consensus        16 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~   81 (305)
                      .+|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +.......+  ..++.++.+.+.+
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F--~~~~~l~~i~~~~   67 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAF--SNCKSLESITFPN   67 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTT--TT-TT-EEEEETS
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeee--ecccccccccccc
Confidence            3566666777777664 344444455666666777776654 444433333  5555666666654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.45  E-value=0.00011  Score=70.53  Aligned_cols=55  Identities=24%  Similarity=0.389  Sum_probs=24.2

Q ss_pred             CCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhh
Q 040815           45 LPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVN  103 (305)
Q Consensus        45 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~  103 (305)
                      +|+|+.|.+++-.+....- .....++++|..||+|+.+++ .+  ..++.+.+|+.|.
T Consensus       147 LPsL~sL~i~~~~~~~~dF-~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknLq~L~  201 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDF-SQLCASFPNLRSLDISGTNIS-NL--SGISRLKNLQVLS  201 (699)
T ss_pred             CcccceEEecCceecchhH-HHHhhccCccceeecCCCCcc-Cc--HHHhccccHHHHh
Confidence            4555555555543322100 000134555555555555555 33  1144444554444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.45  E-value=0.00064  Score=50.96  Aligned_cols=123  Identities=16%  Similarity=0.246  Sum_probs=54.0

Q ss_pred             hhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccE
Q 040815           40 SWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAG  119 (305)
Q Consensus        40 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~  119 (305)
                      ..|.++.+|+.+.+.. .+..+....|  ..+++|+.+++.++ +. .++..+|....+                  ++.
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F--~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~------------------l~~   62 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAF--SNCTSLKSINFPNN-LT-SIGDNAFSNCKS------------------LES   62 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTT--TT-TT-SEEEESST-TS-CE-TTTTTT-TT-------------------EE
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhc--cccccccccccccc-cc-ccceeeeecccc------------------ccc
Confidence            4566777888888774 4555555555  66777888888775 55 666666655433                  344


Q ss_pred             EEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCC
Q 040815          120 IILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFL  189 (305)
Q Consensus       120 L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  189 (305)
                      +.+.+ .+.......|..++.|+.+++..+ +.......|.++ +|+.+.+.. .+.......|.++++|
T Consensus        63 i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   63 ITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            44543 232223344555667777777554 443344456565 666666654 3332333445554444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.41  E-value=5.9e-05  Score=72.46  Aligned_cols=128  Identities=20%  Similarity=0.201  Sum_probs=76.9

Q ss_pred             CCccEEEccCCcCc-ccCChhhhhccchhhhhhhccc----c---ccCcccccccEEEccCCccccccchhhhCCCCCCE
Q 040815           72 SKLRIIDLSNNRFS-GNLPSKSFLCWNAMKIVNARRM----M---TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQV  143 (305)
Q Consensus        72 ~~L~~L~L~~n~l~-g~~p~~~~~~l~~L~~l~l~~~----~---~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~  143 (305)
                      .+|++||+++.... ...|......+|+|+.|.+.+.    .   ......++|..||+|+.+++. + ..++++++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence            46777777665432 2233333344566666655441    1   122346778888888888873 3 55778888888


Q ss_pred             EecCCccccc-cCCccccCCCCCCEEeCCCCcCCccC--c----cccccCCCCCEEeccCCcccC
Q 040815          144 LNLQYNNLQG-LIPSSLGNLTNLESLDLSNKKFAGRI--P----QQLVELTFLEFFNVSDNYLTG  201 (305)
Q Consensus       144 L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~--p----~~~~~l~~L~~L~l~~N~l~~  201 (305)
                      |.+.+=.+.. ..-..+.++++|+.||+|..+.....  .    +.-..+|.|+.||.|+..+..
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            8777655542 11123557888888888887654221  1    122347888888888776653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.21  E-value=0.00024  Score=58.79  Aligned_cols=70  Identities=21%  Similarity=0.180  Sum_probs=34.1

Q ss_pred             cchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCc
Q 040815           14 IPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFS   85 (305)
Q Consensus        14 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~   85 (305)
                      +......+..|+.|++.+..++..  ..|-.+++|+.|.++.|.+.........+..+++|++++++.|++.
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            333334455555555555544321  1233456666666666633222211222234466666666666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.95  E-value=0.00047  Score=57.08  Aligned_cols=76  Identities=32%  Similarity=0.395  Sum_probs=39.8

Q ss_pred             ccEEEccCC--ccccccchhhhCCCCCCEEecCCccccccCCcc---ccCCCCCCEEeCCCCcCCccC---ccccccCCC
Q 040815          117 LAGIILSNN--RFVGAIPASIANLKGLQVLNLQYNNLQGLIPSS---LGNLTNLESLDLSNKKFAGRI---PQQLVELTF  188 (305)
Q Consensus       117 L~~L~ls~n--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~  188 (305)
                      |+.|++|.|  .+.+.++.-...+++|++++|+.|++..  +..   +..+.+|..||+.+|..+..-   -..|.-+++
T Consensus        67 LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~  144 (260)
T KOG2739|consen   67 LKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPS  144 (260)
T ss_pred             hhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhh
Confidence            444445555  3333333333445777777777777662  222   334556667777777655311   123444566


Q ss_pred             CCEEec
Q 040815          189 LEFFNV  194 (305)
Q Consensus       189 L~~L~l  194 (305)
                      |++||-
T Consensus       145 L~~LD~  150 (260)
T KOG2739|consen  145 LKYLDG  150 (260)
T ss_pred             hccccc
Confidence            666643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.49  E-value=8.8e-05  Score=61.96  Aligned_cols=96  Identities=21%  Similarity=0.176  Sum_probs=64.7

Q ss_pred             EEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCC
Q 040815            3 AKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNN   82 (305)
Q Consensus         3 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n   82 (305)
                      |+.=++.|+.+ . -...++.|+.|.|+-|.|+..-|  |..+++|++|+|..|.|..+ ...+.+.++++|+.|.|..|
T Consensus        24 LNcwg~~L~DI-s-ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sl-dEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   24 LNCWGCGLDDI-S-ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESL-DELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             hcccCCCccHH-H-HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccH-HHHHHHhcCchhhhHhhccC
Confidence            44445555522 1 23467888888888888875443  67788888888888888643 23345578888888888888


Q ss_pred             cCcccCChhh----hhccchhhhhh
Q 040815           83 RFSGNLPSKS----FLCWNAMKIVN  103 (305)
Q Consensus        83 ~l~g~~p~~~----~~~l~~L~~l~  103 (305)
                      .-.|.-+...    +..+++|+.||
T Consensus        99 PCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   99 PCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CcccccchhHHHHHHHHcccchhcc
Confidence            8776655432    44566776666

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.28  E-value=0.0018  Score=32.33  Aligned_cols=18  Identities=33%  Similarity=0.670  Sum_probs=8.6

Q ss_pred             CcEEeCCCcccCCCcChhc
Q 040815           24 LEFLGLGNYQISDTFPSWL   42 (305)
Q Consensus        24 L~~L~L~~n~l~~~~p~~~   42 (305)
                      |++||+++|+++ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            445555555554 344433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.22  E-value=0.002  Score=32.13  Aligned_cols=11  Identities=45%  Similarity=0.564  Sum_probs=4.4

Q ss_pred             CEEecCCcccc
Q 040815          142 QVLNLQYNNLQ  152 (305)
Q Consensus       142 ~~L~Ls~N~l~  152 (305)
                      ++|||++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33444444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.00  E-value=0.0011  Score=55.69  Aligned_cols=59  Identities=20%  Similarity=0.200  Sum_probs=34.3

Q ss_pred             CCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCc
Q 040815           21 CSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFS   85 (305)
Q Consensus        21 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~   85 (305)
                      +.+.+.|+.-++.++++  .....++.|++|.|+-|+|+.+.|  +  ..+++|+.|+|..|.|.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l--~rCtrLkElYLRkN~I~   76 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--L--QRCTRLKELYLRKNCIE   76 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--H--HHHHHHHHHHHHhcccc
Confidence            45566666666666432  123456667777777776665432  2  44566666666666555

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.73  E-value=7.1e-05  Score=68.84  Aligned_cols=83  Identities=22%  Similarity=0.105  Sum_probs=46.8

Q ss_pred             EEccCCccccc----cchhccCCCCCcEEeCCCcccCCCcCh----hccCC-CCCCEEEccCccCCcccCCCC--CCCCC
Q 040815            3 AKRSHNLFEGR----IPRSLINCSKLEFLGLGNYQISDTFPS----WLGTL-PKLNVLILRSNIFYGVIEEPR--TGCGF   71 (305)
Q Consensus         3 L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~----~~~~l-~~L~~L~L~~n~l~~~~~~~~--~~~~l   71 (305)
                      |+|.+|.+...    +-..+....+|+.|++++|.+.+.--.    .+... ..+++|++..|.++.......  .+...
T Consensus        92 L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~  171 (478)
T KOG4308|consen   92 LSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKN  171 (478)
T ss_pred             hhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcc
Confidence            56667776643    233555677788888888877632111    12222 456667777777654322111  11235


Q ss_pred             CCccEEEccCCcCc
Q 040815           72 SKLRIIDLSNNRFS   85 (305)
Q Consensus        72 ~~L~~L~L~~n~l~   85 (305)
                      ..++.+|++.|.+.
T Consensus       172 ~~l~~l~l~~n~l~  185 (478)
T KOG4308|consen  172 EHLTELDLSLNGLI  185 (478)
T ss_pred             cchhHHHHHhcccc
Confidence            66777777777663

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.68  E-value=0.011  Score=30.66  Aligned_cols=23  Identities=48%  Similarity=0.790  Sum_probs=17.9

Q ss_pred             CCCccEEEccCCcCcccCChhhhh
Q 040815           71 FSKLRIIDLSNNRFSGNLPSKSFL   94 (305)
Q Consensus        71 l~~L~~L~L~~n~l~g~~p~~~~~   94 (305)
                      +++|+.|+|++|++. .+|..+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            467888888888888 88877664

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.68  E-value=0.011  Score=30.66  Aligned_cols=23  Identities=48%  Similarity=0.790  Sum_probs=17.9

Q ss_pred             CCCccEEEccCCcCcccCChhhhh
Q 040815           71 FSKLRIIDLSNNRFSGNLPSKSFL   94 (305)
Q Consensus        71 l~~L~~L~L~~n~l~g~~p~~~~~   94 (305)
                      +++|+.|+|++|++. .+|..+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            467888888888888 88877664

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.09  E-value=0.013  Score=27.11  Aligned_cols=13  Identities=62%  Similarity=0.984  Sum_probs=4.9

Q ss_pred             CccEEEccCCcCc
Q 040815           73 KLRIIDLSNNRFS   85 (305)
Q Consensus        73 ~L~~L~L~~n~l~   85 (305)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3445555555444

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.11  E-value=0.001  Score=54.30  Aligned_cols=82  Identities=15%  Similarity=0.165  Sum_probs=55.2

Q ss_pred             cccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEecc
Q 040815          116 ILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVS  195 (305)
Q Consensus       116 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~  195 (305)
                      ..+.||++.|++- ..-..|.-++.+..||++.|++. ..|..++.+..+..+++..|.++ ..|.++...+.++++++.
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            3555667776665 44445556666777777777776 56666776667777777777766 667777777777777777


Q ss_pred             CCccc
Q 040815          196 DNYLT  200 (305)
Q Consensus       196 ~N~l~  200 (305)
                      .|.|.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            77654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.15  E-value=0.0072  Score=49.56  Aligned_cols=86  Identities=21%  Similarity=0.280  Sum_probs=55.8

Q ss_pred             CCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCC
Q 040815           69 CGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQY  148 (305)
Q Consensus        69 ~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~  148 (305)
                      ......+.||++.|++. .+-.. |+.++.+.                  .||++.|.+. ..|..++....+..+++..
T Consensus        39 ~~~kr~tvld~~s~r~v-n~~~n-~s~~t~~~------------------rl~~sknq~~-~~~~d~~q~~e~~~~~~~~   97 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLV-NLGKN-FSILTRLV------------------RLDLSKNQIK-FLPKDAKQQRETVNAASHK   97 (326)
T ss_pred             hccceeeeehhhhhHHH-hhccc-hHHHHHHH------------------HHhccHhhHh-hChhhHHHHHHHHHHHhhc
Confidence            34566677777777665 33322 33333333                  3346666665 6677777777777777777


Q ss_pred             ccccccCCccccCCCCCCEEeCCCCcCC
Q 040815          149 NNLQGLIPSSLGNLTNLESLDLSNKKFA  176 (305)
Q Consensus       149 N~l~~~~p~~~~~l~~L~~L~L~~N~l~  176 (305)
                      |..+ ..|.+++..+.++++++.+|.+.
T Consensus        98 n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   98 NNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             cchh-hCCccccccCCcchhhhccCcch
Confidence            7776 66777888888888888777654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.31  E-value=0.14  Score=26.44  Aligned_cols=14  Identities=43%  Similarity=0.484  Sum_probs=7.9

Q ss_pred             CCCcEEeCCCcccC
Q 040815           22 SKLEFLGLGNYQIS   35 (305)
Q Consensus        22 ~~L~~L~L~~n~l~   35 (305)
                      ++|++|+|++|+|.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45555555555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.31  E-value=0.14  Score=26.44  Aligned_cols=14  Identities=43%  Similarity=0.484  Sum_probs=7.9

Q ss_pred             CCCcEEeCCCcccC
Q 040815           22 SKLEFLGLGNYQIS   35 (305)
Q Consensus        22 ~~L~~L~L~~n~l~   35 (305)
                      ++|++|+|++|+|.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45555555555554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.55  E-value=0.002  Score=59.39  Aligned_cols=162  Identities=20%  Similarity=0.206  Sum_probs=96.0

Q ss_pred             EEEccCCccccc----cchhccCC-CCCcEEeCCCcccCCC----cChhccCCCCCCEEEccCccCCcc--c--CCCC--
Q 040815            2 EAKRSHNLFEGR----IPRSLINC-SKLEFLGLGNYQISDT----FPSWLGTLPKLNVLILRSNIFYGV--I--EEPR--   66 (305)
Q Consensus         2 ~L~Ls~n~l~~~----~~~~l~~l-~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~--~--~~~~--   66 (305)
                      .|+|++|.+.+.    +-..+... ..+++|++..|.++..    +.+.+....+++.++++.|.+...  .  +...  
T Consensus       119 ~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~  198 (478)
T KOG4308|consen  119 QLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALES  198 (478)
T ss_pred             HhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhh
Confidence            478888988843    22233333 6678889988888754    445566778999999999987411  1  1111  


Q ss_pred             CCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccc----cchhhhCC-CCC
Q 040815           67 TGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGA----IPASIANL-KGL  141 (305)
Q Consensus        67 ~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~----~p~~~~~l-~~L  141 (305)
                      .+....++++|.++++.++   +..+    ..   ++.    .+......+.++++..|.+...    ....+..+ ..+
T Consensus       199 ~~~~~~~le~L~L~~~~~t---~~~c----~~---l~~----~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l  264 (478)
T KOG4308|consen  199 AASPLSSLETLKLSRCGVT---SSSC----AL---LDE----VLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETL  264 (478)
T ss_pred             hhcccccHHHHhhhhcCcC---hHHH----HH---HHH----HHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhh
Confidence            0124667888888888776   1110    00   000    0001112244566777776533    22333444 567


Q ss_pred             CEEecCCccccccCC----ccccCCCCCCEEeCCCCcCCc
Q 040815          142 QVLNLQYNNLQGLIP----SSLGNLTNLESLDLSNKKFAG  177 (305)
Q Consensus       142 ~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~  177 (305)
                      ++++++.|.|+..-.    ..+..+..++.+.++.|.+..
T Consensus       265 ~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  265 RVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            888888888875433    334566778888888887764

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.42  E-value=0.039  Score=27.94  Aligned_cols=13  Identities=62%  Similarity=0.910  Sum_probs=5.1

Q ss_pred             CCCEEeCCCCcCC
Q 040815          164 NLESLDLSNKKFA  176 (305)
Q Consensus       164 ~L~~L~L~~N~l~  176 (305)
                      +|++|+|++|.++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4444444444444

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.28  E-value=0.083  Score=42.48  Aligned_cols=81  Identities=19%  Similarity=0.181  Sum_probs=56.6

Q ss_pred             cccEEEccCCccccccchhhhCCCCCCEEecCCccccccC-Ccccc-CCCCCCEEeCCCC-cCCccCccccccCCCCCEE
Q 040815          116 ILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLI-PSSLG-NLTNLESLDLSNK-KFAGRIPQQLVELTFLEFF  192 (305)
Q Consensus       116 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~-~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L  192 (305)
                      .++.+|-++..+..+--+.+..++.++.|.+.++.--+.- -+-++ -.++|+.|++++| +|+..--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            3778888888888766677778888888888777532110 00011 3478999999988 6776555667788888888


Q ss_pred             eccC
Q 040815          193 NVSD  196 (305)
Q Consensus       193 ~l~~  196 (305)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            7765

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=88.23  E-value=0.67  Score=37.41  Aligned_cols=26  Identities=15%  Similarity=0.189  Sum_probs=16.2

Q ss_pred             CceEEEEeeeehhhhhhHHHHHHhhh
Q 040815          257 DRKIILTGYAGGLVAGLVLGFNFSTG  282 (305)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (305)
                      ....+++|+++|++.+++++++++.+
T Consensus        35 d~~~I~iaiVAG~~tVILVI~i~v~v   60 (221)
T PF08374_consen   35 DYVKIMIAIVAGIMTVILVIFIVVLV   60 (221)
T ss_pred             cceeeeeeeecchhhhHHHHHHHHHH
Confidence            45566777777776666655555444

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=86.91  E-value=0.11  Score=47.93  Aligned_cols=16  Identities=25%  Similarity=0.345  Sum_probs=9.0

Q ss_pred             hhCCCCCCEEecCCcc
Q 040815          135 IANLKGLQVLNLQYNN  150 (305)
Q Consensus       135 ~~~l~~L~~L~Ls~N~  150 (305)
                      +..++.++.+.+..+.
T Consensus       358 ~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCG  373 (482)
T ss_pred             HhcCCCcchhhhhhhh
Confidence            3455566666665555

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=85.13  E-value=0.77  Score=23.81  Aligned_cols=14  Identities=29%  Similarity=0.209  Sum_probs=7.0

Q ss_pred             CCCCEEEccCccCC
Q 040815           46 PKLNVLILRSNIFY   59 (305)
Q Consensus        46 ~~L~~L~L~~n~l~   59 (305)
                      ++|+.|+|+.|+|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            34555555555543

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=84.74  E-value=0.47  Score=26.83  Aligned_cols=13  Identities=15%  Similarity=0.240  Sum_probs=5.4

Q ss_pred             eeeehhhhhhHHH
Q 040815          264 GYAGGLVAGLVLG  276 (305)
Q Consensus       264 ~~~~~~~~~~~~~  276 (305)
                      ++++++++++++.
T Consensus         7 aIIv~V~vg~~ii   19 (38)
T PF02439_consen    7 AIIVAVVVGMAII   19 (38)
T ss_pred             hHHHHHHHHHHHH
Confidence            3344444444433

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=83.75  E-value=0.76  Score=23.79  Aligned_cols=18  Identities=33%  Similarity=0.719  Sum_probs=13.8

Q ss_pred             CCccEEEccCCcCcccCCh
Q 040815           72 SKLRIIDLSNNRFSGNLPS   90 (305)
Q Consensus        72 ~~L~~L~L~~n~l~g~~p~   90 (305)
                      +.|+.|+.++|+++ ++|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            35788888888888 7775

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=82.29  E-value=0.92  Score=33.51  Aligned_cols=10  Identities=40%  Similarity=0.690  Sum_probs=4.0

Q ss_pred             eeeehhhhhh
Q 040815          264 GYAGGLVAGL  273 (305)
Q Consensus       264 ~~~~~~~~~~  273 (305)
                      +|++|+++++
T Consensus        68 ~Ii~gv~aGv   77 (122)
T PF01102_consen   68 GIIFGVMAGV   77 (122)
T ss_dssp             HHHHHHHHHH
T ss_pred             ehhHHHHHHH
Confidence            3334444443

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=82.26  E-value=1.6  Score=24.77  Aligned_cols=28  Identities=7%  Similarity=0.053  Sum_probs=13.9

Q ss_pred             ehhhhhhHHHHHHhhhhhhhhHhhhhhh
Q 040815          267 GGLVAGLVLGFNFSTGIIGWILEKLGTQ  294 (305)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (305)
                      +++++++++++++......+|..+++|.
T Consensus         6 IaIIv~V~vg~~iiii~~~~YaCcykk~   33 (38)
T PF02439_consen    6 IAIIVAVVVGMAIIIICMFYYACCYKKH   33 (38)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            4455555555555544444454444433

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.73  E-value=0.59  Score=37.74  Aligned_cols=84  Identities=17%  Similarity=0.110  Sum_probs=51.6

Q ss_pred             CCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCc-CcccCChhhhhccchhh
Q 040815           22 SKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR-FSGNLPSKSFLCWNAMK  100 (305)
Q Consensus        22 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~g~~p~~~~~~l~~L~  100 (305)
                      ..++.+|-++..|..+--+.+..++.++.|.+.++.--+..--...-...++|+.|+++.|. |+ +---..+..+.+|+
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLR  179 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhH
Confidence            45778888888887666666778888888888877532110000011245899999999875 33 22223344556666


Q ss_pred             hhhhcc
Q 040815          101 IVNARR  106 (305)
Q Consensus       101 ~l~l~~  106 (305)
                      .|.+.+
T Consensus       180 ~L~l~~  185 (221)
T KOG3864|consen  180 RLHLYD  185 (221)
T ss_pred             HHHhcC
Confidence            665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	305
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-16
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-16
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-14

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 118/289 (40%), Gaps = 64/289 (22%)
Query: 8   NLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNV----------------- 50
           N   G IP  L NC+ L ++ L N +++   P W+G L  L +                 
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 51  -------LILRSNIFYGVI------EEPRTGCGF-SKLRIIDLSNNRF------SGNLPS 90
                  L L +N+F G I      +  +    F +  R + + N+        +GNL  
Sbjct: 533 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL-- 590
Query: 91  KSFLCWNAMKIVNARRMMTYN--KIPDILAG---------------IILSNNRFVGAIPA 133
              L +  ++     R+ T N   I   + G               + +S N   G IP 
Sbjct: 591 ---LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 647
Query: 134 SIANLKGXXXXXXXXXXXXXXIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFN 193
            I ++                IP  +G+L  L  LDLS+ K  GRIPQ +  LT L   +
Sbjct: 648 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 707
Query: 194 VSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGETPTNED 242
           +S+N L+GPIP+  QF TF    F  N GLCG PL + C+    P+N D
Sbjct: 708 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CD----PSNAD 751

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 118/289 (40%), Gaps = 64/289 (22%)
Query: 8   NLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNV----------------- 50
           N   G IP  L NC+ L ++ L N +++   P W+G L  L +                 
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 51  -------LILRSNIFYGVI------EEPRTGCGF-SKLRIIDLSNNRF------SGNLPS 90
                  L L +N+F G I      +  +    F +  R + + N+        +GNL  
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL-- 593
Query: 91  KSFLCWNAMKIVNARRMMTYN--KIPDILAG---------------IILSNNRFVGAIPA 133
              L +  ++     R+ T N   I   + G               + +S N   G IP 
Sbjct: 594 ---LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650
Query: 134 SIANLKGXXXXXXXXXXXXXXIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFN 193
            I ++                IP  +G+L  L  LDLS+ K  GRIPQ +  LT L   +
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710
Query: 194 VSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGETPTNED 242
           +S+N L+GPIP+  QF TF    F  N GLCG PL + C+    P+N D
Sbjct: 711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CD----PSNAD 754

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 90/239 (37%), Gaps = 42/239 (17%)
Query: 12  GRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGF 71
           G IP ++   ++L +L + +  +S   P +L  +  L  L    N   G +  P +    
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL--PPSISSL 148
Query: 72  SKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAI 131
             L  I    NR SG +P                   +Y     +   + +S NR  G I
Sbjct: 149 PNLVGITFDGNRISGAIPD------------------SYGSFSKLFTSMTISRNRLTGKI 190
Query: 132 PASIANLK-------------------GXXXXXXXXXXXXXXIPSSLGNL---TNLESLD 169
           P + ANL                    G              +   LG +    NL  LD
Sbjct: 191 PPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD 250
Query: 170 LSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPL 228
           L N +  G +PQ L +L FL   NVS N L G IPQG     FD +++  N  LCG PL
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	305
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-63
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-43
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-43
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	4e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  210 bits (537), Expect = 8e-63
 Identities = 62/245 (25%), Positives = 97/245 (39%), Gaps = 24/245 (9%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           + NLF G IP ++   S      +    I+     ++             N+        
Sbjct: 546 NTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN 125
                 S     ++++  + G+         +                   +  + +S N
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS-------------------MMFLDMSYN 642

Query: 126 RFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVE 185
              G IP  I ++  L +LNL +N++ G IP  +G+L  L  LDLS+ K  GRIPQ +  
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702

Query: 186 LTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGETPTNEDHTE 245
           LT L   ++S+N L+GPIP+  QF TF    F  N GLCG PL + C+         H  
Sbjct: 703 LTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CDPSNADGYAHHQR 761

Query: 246 GSSES 250
                
Sbjct: 762 SHHHH 766

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  157 bits (400), Expect = 1e-43
 Identities = 63/202 (31%), Positives = 88/202 (43%), Gaps = 21/202 (10%)

Query: 6   SHNLFEGRIPRSLI-NCSKLEFLGLGNYQISDTFPSWLGTL-PKLNVLILRSNIFYGVIE 63
           S N F G +P   +     L+ L L   + S   P  L  L   L  L L SN F G I 
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385

Query: 64  EPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILS 123
                   + L+ + L NN F+G +P    L        N   +++          + LS
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPP--TLS-------NCSELVS----------LHLS 426

Query: 124 NNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQL 183
            N   G IP+S+ +L  L+ L L  N L+G IP  L  +  LE+L L      G IP  L
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486

Query: 184 VELTFLEFFNVSDNYLTGPIPQ 205
              T L + ++S+N LTG IP+
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPK 508

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  155 bits (395), Expect = 6e-43
 Identities = 61/203 (30%), Positives = 83/203 (40%), Gaps = 23/203 (11%)

Query: 6   SHNLFEGRIPRSLINCSK--LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIE 63
           S N F G I  +L    K  L+ L L N   +   P  L    +L  L L  N   G I 
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI- 434

Query: 64  EPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILS 123
            P +    SKLR + L  N   G +P +                         L  +IL 
Sbjct: 435 -PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT-------------------LETLILD 474

Query: 124 NNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQL 183
            N   G IP+ ++N   L  ++L  N L G IP  +G L NL  L LSN  F+G IP +L
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

Query: 184 VELTFLEFFNVSDNYLTGPIPQG 206
            +   L + +++ N   G IP  
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAA 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  149 bits (379), Expect = 9e-41
 Identities = 66/199 (33%), Positives = 91/199 (45%), Gaps = 25/199 (12%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
            +N F G+IP +L NCS+L  L L    +S T PS LG+L KL  L L  N+  G I  P
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI--P 459

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN 125
           +       L  + L  N  +G +PS    C N                   L  I LSNN
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTN-------------------LNWISLSNN 500

Query: 126 RFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVE 185
           R  G IP  I  L+ L +L L  N+  G IP+ LG+  +L  LDL+   F G IP  + +
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560

Query: 186 LTFLEFFNVSDNYLTGPIP 204
            +      ++ N++ G   
Sbjct: 561 QSGK----IAANFIAGKRY 575

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  148 bits (377), Expect = 1e-40
 Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 25/203 (12%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S N F   IP  L +CS L+ L +   ++S  F   + T  +L +L + SN F G I   
Sbjct: 208 SSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP- 265

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN 125
                   L+ + L+ N+F+G +P   FL                      L G+ LS N
Sbjct: 266 ---LPLKSLQYLSLAENKFTGEIPD--FLSGACDT----------------LTGLDLSGN 304

Query: 126 RFVGAIPASIANLKGLQVLNLQYNNLQGLIP-SSLGNLTNLESLDLSNKKFAGRIPQQLV 184
            F GA+P    +   L+ L L  NN  G +P  +L  +  L+ LDLS  +F+G +P+ L 
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364

Query: 185 ELTF-LEFFNVSDNYLTGPIPQG 206
            L+  L   ++S N  +GPI   
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPN 387

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  139 bits (353), Expect = 3e-37
 Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 17/209 (8%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPS--WLGTLPKLNVLILRSNIFYGVIE 63
           S++   G +       + L  L L    +S    +   LG+   L  L + SN      +
Sbjct: 85  SNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143

Query: 64  EPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNK----IP----D 115
               G   + L ++DLS N  SG       L     ++ +    ++ NK    +      
Sbjct: 144 VS-GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA--ISGNKISGDVDVSRCV 200

Query: 116 ILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF 175
            L  + +S+N F   IP  + +   LQ L++  N L G    ++   T L+ L++S+ +F
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259

Query: 176 AGRIPQQLVELTFLEFFNVSDNYLTGPIP 204
            G IP     L  L++ ++++N  TG IP
Sbjct: 260 VGPIPPLP--LKSLQYLSLAENKFTGEIP 286

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  137 bits (348), Expect = 2e-36
 Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 28/201 (13%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S N   G +   +  C  LEFL + +   S   P  LG    L  L +  N   G     
Sbjct: 186 SGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF--S 240

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN 125
           R     ++L+++++S+N+F G +P       +                   L  + L+ N
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIPP--LPLKS-------------------LQYLSLAEN 279

Query: 126 RFVGAIPASIA-NLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQ-L 183
           +F G IP  ++     L  L+L  N+  G +P   G+ + LESL LS+  F+G +P   L
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339

Query: 184 VELTFLEFFNVSDNYLTGPIP 204
           +++  L+  ++S N  +G +P
Sbjct: 340 LKMRGLKVLDLSFNEFSGELP 360

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  134 bits (340), Expect = 2e-35
 Identities = 58/204 (28%), Positives = 80/204 (39%), Gaps = 30/204 (14%)

Query: 6   SHNLFEGRIPRSLI---NCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVI 62
           S N   G      +    C +L+ L +   +IS      +     L  L + SN F   I
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI 216

Query: 63  EEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIIL 122
             P  G   S L+ +D+S N+ SG+       C                     L  + +
Sbjct: 217 --PFLG-DCSALQHLDISGNKLSGDFSRAISTCTE-------------------LKLLNI 254

Query: 123 SNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSL-GNLTNLESLDLSNKKFAGRIPQ 181
           S+N+FVG IP     LK LQ L+L  N   G IP  L G    L  LDLS   F G +P 
Sbjct: 255 SSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312

Query: 182 QLVELTFLEFFNVSDNYLTGPIPQ 205
                + LE   +S N  +G +P 
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPM 336

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  128 bits (323), Expect = 3e-33
 Identities = 44/201 (21%), Positives = 79/201 (39%), Gaps = 25/201 (12%)

Query: 8   NLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRT 67
           N+    +  SL++ + LE L L N  I+ +          L  L L  N   G +    +
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTS 121

Query: 68  GCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRF 127
               S L+ +++S+N           L  N++++++                  LS N  
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD------------------LSANSI 163

Query: 128 VGAIPASIA---NLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLV 184
            GA             L+ L +  N + G +   +    NLE LD+S+  F+  IP  L 
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLG 220

Query: 185 ELTFLEFFNVSDNYLTGPIPQ 205
           + + L+  ++S N L+G   +
Sbjct: 221 DCSALQHLDISGNKLSGDFSR 241

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  128 bits (323), Expect = 3e-33
 Identities = 42/201 (20%), Positives = 65/201 (32%), Gaps = 51/201 (25%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
             N   G IP  L NC+ L ++ L N +++   P W+G L  L +L L +N F G I  P
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--P 531

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN 125
                   L  +DL+ N F                                         
Sbjct: 532 AELGDCRSLIWLDLNTNLF----------------------------------------- 550

Query: 126 RFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN--KKFAGRIPQQL 183
              G IPA++    G     +  N + G     + N    +    +    +F G   +QL
Sbjct: 551 --NGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604

Query: 184 VELTFLEFFNVSDNYLTGPIP 204
             L+     N++     G   
Sbjct: 605 NRLSTRNPCNITSRVYGGHTS 625

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  113 bits (284), Expect = 4e-28
 Identities = 40/187 (21%), Positives = 67/187 (35%), Gaps = 26/187 (13%)

Query: 22  SKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN 81
           + ++              S L +L  L  L L ++   G +      C  + L  +DLS 
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV--SGFKC-SASLTSLDLSR 109

Query: 82  NRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASI-ANLKG 140
           N  SG + + + L        +             L  + +S+N        S    L  
Sbjct: 110 NSLSGPVTTLTSLG-------SCSG----------LKFLNVSSNTLDFPGKVSGGLKLNS 152

Query: 141 LQVLNLQYNNLQGLIPSSL---GNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDN 197
           L+VL+L  N++ G              L+ L +S  K +G +   +     LEF +VS N
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSN 210

Query: 198 YLTGPIP 204
             +  IP
Sbjct: 211 NFSTGIP 217

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 141 LQVLNLQYNNLQ---GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDN 197
           +  ++L    L      + SSL +LT LESL LSN    G +         L   ++S N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN 110

Query: 198 YLTGPIPQGKQFA 210
            L+GP+       
Sbjct: 111 SLSGPVTTLTSLG 123

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  193 bits (494), Expect = 2e-60
 Identities = 66/234 (28%), Positives = 96/234 (41%), Gaps = 16/234 (6%)

Query: 5   RSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEE 64
              N   G IP ++   ++L +L + +  +S   P +L  +  L  L    N   G +  
Sbjct: 84  GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL-- 141

Query: 65  PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNK----IPDILAG- 119
           P +      L  I    NR SG +P            +     ++ N+    IP   A  
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT----ISRNRLTGKIPPTFANL 197

Query: 120 ----IILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF 175
               + LS N   G       + K  Q ++L  N+L   +   +G   NL  LDL N + 
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRI 256

Query: 176 AGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLS 229
            G +PQ L +L FL   NVS N L G IPQG     FD +++  N  LCG PL 
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  129 bits (326), Expect = 2e-35
 Identities = 47/203 (23%), Positives = 76/203 (37%), Gaps = 26/203 (12%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQIS--DTFPSWLGTLPKLNVLILRS-NIFYGVI 62
            +  + G +  +     ++  L L    +      PS L  LP LN L +   N   G I
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93

Query: 63  EEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIIL 122
             P      ++L  + +++   SG +P                           L  +  
Sbjct: 94  --PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-------------------LVTLDF 132

Query: 123 SNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNL-ESLDLSNKKFAGRIPQ 181
           S N   G +P SI++L  L  +    N + G IP S G+ + L  S+ +S  +  G+IP 
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

Query: 182 QLVELTFLEFFNVSDNYLTGPIP 204
               L  L F ++S N L G   
Sbjct: 193 TFANLN-LAFVDLSRNMLEGDAS 214

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  120 bits (303), Expect = 4e-32
 Identities = 36/169 (21%), Positives = 58/169 (34%), Gaps = 21/169 (12%)

Query: 39  PSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN-NRFSGNLPSKSFLCWN 97
                   ++N L L           P +      L  + +   N   G +P        
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 98  AMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPS 157
                              L  + +++    GAIP  ++ +K L  L+  YN L G +P 
Sbjct: 103 -------------------LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143

Query: 158 SLGNLTNLESLDLSNKKFAGRIPQQLVELTFL-EFFNVSDNYLTGPIPQ 205
           S+ +L NL  +     + +G IP      + L     +S N LTG IP 
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  132 bits (334), Expect = 7e-35
 Identities = 42/249 (16%), Positives = 75/249 (30%), Gaps = 30/249 (12%)

Query: 6   SHNLFEGRIPRSLI-NCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEE 64
             N     +          +  + L   +      +    +P L  L+LR      V   
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472

Query: 65  PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI-------- 116
           P        L I+DLSNN  +  +          ++I++    + +N +  +        
Sbjct: 473 PSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILD----LQHNNLARLWKHANPGG 527

Query: 117 ----------LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLE 166
                     L  + L +N F         +L  L++++L  NNL  L  S   N  +L+
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587

Query: 167 SLDLSNKKFAGRIPQQL-VELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL-- 223
           SL+L          +        L   ++  N           F  + N +      L  
Sbjct: 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647

Query: 224 ---CGKPLS 229
              C  P  
Sbjct: 648 HYLCNTPPH 656

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  113 bits (285), Expect = 2e-28
 Identities = 37/227 (16%), Positives = 68/227 (29%), Gaps = 19/227 (8%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIE-- 63
           S+N        S     +LE+  L    I   F   L  L  +  L L+ +     I   
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315

Query: 64  -----EPRTGCGFSKLRIIDLSNNRFSGNLPSKSF----------LCWNAMKIVNARRMM 108
                +  +      L  +++ +N   G + S  F          L  +   +       
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 109 TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP-SSLGNLTNLES 167
             +     L  + L+ N+       + + L  L+VL+L  N +   +       L N+  
Sbjct: 375 FVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFE 434

Query: 168 LDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 214
           + LS  K+          +  L+   +    L         F    N
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  111 bits (279), Expect = 2e-27
 Identities = 37/223 (16%), Positives = 75/223 (33%), Gaps = 31/223 (13%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLG---TLPKLNVLILRSNIFYGVI 62
           S N  +   P       +L  L L N Q+  +    L        +  L L ++      
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 63  EEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIIL 122
                G  ++ L ++DLS N  +  + + SF     ++                     L
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFF------------------L 279

Query: 123 SNNRFVGAIPASIANLKGLQVLNLQYN---------NLQGLIPSSLGNLTNLESLDLSNK 173
             N        S+  L  ++ LNL+ +         +L  +   S   L  LE L++ + 
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339

Query: 174 KFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTS 216
              G        L  L++ ++S+++ +      + F +  ++ 
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  110 bits (277), Expect = 3e-27
 Identities = 44/233 (18%), Positives = 74/233 (31%), Gaps = 21/233 (9%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
             N  +       +    L  L L +  +S T       L  L  L+L +N    +  E 
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGII---- 121
                 S L+ ++LS+N+         F     +  +     +   ++   L   +    
Sbjct: 165 LDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLF----LNNVQLGPSLTEKLCLEL 219

Query: 122 ---------LSNNRFVGAIPASIANLKG--LQVLNLQYNNLQGLIPSSLGNLTNLESLDL 170
                    LSN++       +   LK   L +L+L YNNL  +   S   L  LE   L
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279

Query: 171 SNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL 223
                       L  L  + + N+  ++    I         D+ SF     L
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL-ASLPKIDDFSFQWLKCL 331

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  107 bits (270), Expect = 3e-26
 Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 23/203 (11%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           +HN        +    S+L  L +G   IS   P     LP L VL L+ N    +    
Sbjct: 33  THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS--D 90

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN 125
           +T    + L  + L +N     + +  F+    +  ++                  LS+N
Sbjct: 91  KTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLD------------------LSHN 131

Query: 126 RFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG--NLTNLESLDLSNKKFAGRIPQQL 183
                   +   L+ LQ L L  N +Q L    L     ++L+ L+LS+ +     P   
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 184 VELTFLEFFNVSDNYLTGPIPQG 206
             +  L    +++  L   + + 
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEK 214

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  106 bits (266), Expect = 9e-26
 Identities = 49/223 (21%), Positives = 70/223 (31%), Gaps = 27/223 (12%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTL--PKLNVLILRSNIFYGVIE 63
           SHN        + +    L+ L L N +I       L       L  L L SN       
Sbjct: 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS- 187

Query: 64  EPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGII-- 121
            P       +L  + L+N +   +L  K  L      I N    ++ +++          
Sbjct: 188 -PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS--LSNSQLSTTSNTTFLG 244

Query: 122 ----------LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLS 171
                     LS N        S A L  L+   L+YNN+Q L   SL  L N+  L+L 
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 172 N---------KKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 205
                                  L  LE  N+ DN + G    
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.4 bits (212), Expect = 9e-19
 Identities = 29/156 (18%), Positives = 65/156 (41%), Gaps = 17/156 (10%)

Query: 71  FSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGII--------- 121
            + + +++L++N+    LP+ +F  ++ +  ++    + +N I  +   +          
Sbjct: 24  PTNITVLNLTHNQLRR-LPAANFTRYSQLTSLD----VGFNTISKLEPELCQKLPMLKVL 78

Query: 122 -LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIP 180
            L +N        + A    L  L+L  N++Q +  +      NL +LDLS+   +    
Sbjct: 79  NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138

Query: 181 QQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTS 216
              V+L  L+   +S+N +     +      F N+S
Sbjct: 139 GTQVQLENLQELLLSNNKIQALKSEE--LDIFANSS 172

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  116 bits (293), Expect = 2e-29
 Identities = 40/209 (19%), Positives = 72/209 (34%), Gaps = 12/209 (5%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQIS--DTFPSWLGTLPKLNVLILRSNIFYGVIE 63
           +    +G    S ++   LEFL L    +S              L  L L  N    +  
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-- 388

Query: 64  EPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAG---- 119
                 G  +L  +D  ++          FL    +  ++     T      I  G    
Sbjct: 389 -SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 120 --IILSNNRFVGAI-PASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFA 176
             + ++ N F     P     L+ L  L+L    L+ L P++  +L++L+ L++S+  F 
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 177 GRIPQQLVELTFLEFFNVSDNYLTGPIPQ 205
                    L  L+  + S N++     Q
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  115 bits (291), Expect = 3e-29
 Identities = 44/210 (20%), Positives = 78/210 (37%), Gaps = 19/210 (9%)

Query: 7   HNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPR 66
              F+G   +S    + L++L L    +     ++LG L +L  L  + +    + E   
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSE-FS 415

Query: 67  TGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKI-----PDILAG-- 119
                  L  +D+S+        +  F   ++++++     M  N       PDI     
Sbjct: 416 VFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLK----MAGNSFQENFLPDIFTELR 470

Query: 120 ----IILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF 175
               + LS  +     P +  +L  LQVLN+ +NN   L       L +L+ LD S    
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

Query: 176 AGRIPQQLVEL-TFLEFFNVSDNYLTGPIP 204
                Q+L    + L F N++ N       
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  102 bits (255), Expect = 2e-24
 Identities = 39/206 (18%), Positives = 70/206 (33%), Gaps = 27/206 (13%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S N        S  +  +L+ L L   +I         +L  L+ LIL  N    +    
Sbjct: 36  SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--L 93

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN 125
               G S L+ +       +  L +        +K +N                  +++N
Sbjct: 94  GAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELN------------------VAHN 134

Query: 126 RFVGA-IPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLE----SLDLSNKKFAGRIP 180
                 +P   +NL  L+ L+L  N +Q +  + L  L  +     SLDLS        P
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 181 QQLVELTFLEFFNVSDNYLTGPIPQG 206
               E+  L    + +N+ +  + + 
Sbjct: 195 GAFKEIR-LHKLTLRNNFDSLNVMKT 219

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  100 bits (250), Expect = 9e-24
 Identities = 36/202 (17%), Positives = 65/202 (32%), Gaps = 27/202 (13%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
            +  F       L +  +L F                  LP L  L L  N         
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFT-----SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN 125
           ++  G + L+ +DLS N       S +FL    ++ ++                    ++
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITM--SSNFLGLEQLEHLD------------------FQHS 406

Query: 126 RFVGAIPASI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRI-PQQL 183
                   S+  +L+ L  L++ + + +         L++LE L ++   F     P   
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 184 VELTFLEFFNVSDNYLTGPIPQ 205
            EL  L F ++S   L    P 
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 89.3 bits (222), Expect = 4e-20
 Identities = 44/204 (21%), Positives = 69/204 (33%), Gaps = 30/204 (14%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
             N ++  IP +L      + L L    +         + P+L VL L       +    
Sbjct: 16  ELNFYK--IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE--D 69

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN 125
                 S L  + L+ N     L   +F              ++       L  ++    
Sbjct: 70  GAYQSLSHLSTLILTGNPIQS-LALGAF------------SGLSS------LQKLVAVET 110

Query: 126 RFVGAIPASIANLKGLQVLNLQYNNLQGL-IPSSLGNLTNLESLDLSNKKFAGRIPQQLV 184
                    I +LK L+ LN+ +N +Q   +P    NLTNLE LDLS+ K        L 
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 185 ELTFLEFFNV----SDNYLTGPIP 204
            L  +   N+    S N +    P
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQP 194

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.5 bits (220), Expect = 9e-20
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 19/213 (8%)

Query: 6   SHNLFEG-RIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEE 64
           +HNL +  ++P    N + LE L L + +I   + + L  L ++ +L L  ++    +  
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 65  PRTGC-GFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVN--ARRMMTYNKIPDI----- 116
            + G     +L  + L NN  S N+          +++             +        
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 117 --LAGIILSNNR------FVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESL 168
             L  + +   R      ++  I      L  +   +L    ++ +   S       + L
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHL 309

Query: 169 DLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTG 201
           +L N KF      +L  L  L F +        
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 86.6 bits (215), Expect = 4e-19
 Identities = 37/213 (17%), Positives = 68/213 (31%), Gaps = 17/213 (7%)

Query: 6   SHNLFEGRIPRSLI-NCSKLEFLGL------GNYQISDTFPSWLGTLPKLNVLILR-SNI 57
            +N     + ++ I   + LE   L          +     S L  L  L +   R + +
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 58  FYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDIL 117
            Y + +        + +    L +              W  +++VN      + + P + 
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN----CKFGQFPTLK 323

Query: 118 AGII--LSNNRFVGAIPASIANLKGLQVLNLQYNNLQ--GLIPSSLGNLTNLESLDLSNK 173
              +  L+     G    S  +L  L+ L+L  N L   G    S    T+L+ LDLS  
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 174 KFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 206
                +    + L  LE  +   + L       
Sbjct: 384 GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 86.2 bits (214), Expect = 5e-19
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 20/136 (14%)

Query: 71  FSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGA 130
               + +DLS N     L S SF  +  +++++                  LS       
Sbjct: 27  PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLD------------------LSRCEIQTI 67

Query: 131 IPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLE 190
              +  +L  L  L L  N +Q L   +   L++L+ L       A      +  L  L+
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 191 FFNVSDNYLTG-PIPQ 205
             NV+ N +    +P+
Sbjct: 128 ELNVAHNLIQSFKLPE 143

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.9 bits (182), Expect = 7e-15
 Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 14/176 (7%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTF-PSWLGTLPKLNVLILRSNIFYGVIEE 64
           SH              S LE L +      + F P     L  L  L L       +   
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-- 486

Query: 65  PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGII--- 121
           P      S L+++++S+N F   L +  + C N++++++             L       
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545

Query: 122 ----LSNNRFVGAIPAS--IANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLS 171
               L+ N F         +  +K  + L ++   ++   PS    +  + SL+++
Sbjct: 546 AFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 122 LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQ 181
                F   IP ++      + L+L +N L+ L   S  +   L+ LDLS  +       
Sbjct: 14  CMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 182 QLVELTFLEFFNVSDNYLTGPIP 204
               L+ L    ++ N +     
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLAL 93

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  106 bits (267), Expect = 6e-26
 Identities = 30/215 (13%), Positives = 63/215 (29%), Gaps = 44/215 (20%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
            +            N   L  + + N       P++L  LP++ ++ +  N      +  
Sbjct: 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292

Query: 66  RTGCGFS------KLRIIDLSNNRFS--------GNLPSKSFLCWNAMKIVNARRMMTYN 111
                 +      K++II +  N             +                       
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK--------------------- 331

Query: 112 KIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLS 171
                L  +    N+  G +P +  +   L  LNL YN +  +  +  G    +E+L  +
Sbjct: 332 -----LGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385

Query: 172 NKKFAGRIPQ--QLVELTFLEFFNVSDNYLTGPIP 204
           + K    IP       ++ +   + S N +     
Sbjct: 386 HNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  103 bits (259), Expect = 6e-25
 Identities = 29/219 (13%), Positives = 58/219 (26%), Gaps = 40/219 (18%)

Query: 6   SHNLFEG-------RIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIF 58
           S+N            +  +      +  + L N QIS        T   L+ + L  N+ 
Sbjct: 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469

Query: 59  YGVIEE-----PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKI 113
             + +               L  IDL  N+ +             +  ++          
Sbjct: 470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID---------- 519

Query: 114 PDILAGIILSNNRFVGAIPASIANLKGLQVLNLQ------YNNLQGLIPSSLGNLTNLES 167
                   LS N F    P    N   L+   ++       N      P  +    +L  
Sbjct: 520 --------LSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 168 LDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 206
           L + +      + +++     +   ++ DN         
Sbjct: 571 LQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  102 bits (256), Expect = 2e-24
 Identities = 32/205 (15%), Positives = 63/205 (30%), Gaps = 24/205 (11%)

Query: 6   SHN-LFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEE 64
            +N L    +  SL    KL  L     Q+    P+  G+  KL  L L  N    +   
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPAN 371

Query: 65  PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLC-WNAMKIVNARRMMTYNKIPDILAGIILS 123
                   ++  +  ++N+    +P+       + M  ++     +YN+I  +       
Sbjct: 372 --FCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAID----FSYNEIGSVDGKNFDP 424

Query: 124 NNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN-------KKFA 176
                  +  +      +  +NL  N +           + L S++L         K   
Sbjct: 425 -------LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477

Query: 177 GRIPQQLVELTFLEFFNVSDNYLTG 201
               +       L   ++  N LT 
Sbjct: 478 KDENENFKNTYLLTSIDLRFNKLTK 502

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.7 bits (249), Expect = 2e-23
 Identities = 32/233 (13%), Positives = 74/233 (31%), Gaps = 41/233 (17%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWL--GTLPKLNVLILRSNIFYGVIE 63
           ++N              ++E L   + ++    P+     ++  ++ +    N    V  
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

Query: 64  E-----PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILA 118
           +       T      +  I+LSNN+ S   P + F   + +  +N    +  N + +I  
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSIN----LMGNMLTEIPK 474

Query: 119 GII-----------------LSNNRFVGAIPASIA--NLKGLQVLNLQYNNLQGLIPSSL 159
             +                 L  N+    +        L  L  ++L YN+     P+  
Sbjct: 475 NSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQP 532

Query: 160 GNLTNLESLDLSNK------KFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 206
            N + L+   + N+      +     P+ +     L    +  N +   + + 
Sbjct: 533 LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEK 584

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.3 bits (248), Expect = 2e-23
 Identities = 29/202 (14%), Positives = 54/202 (26%), Gaps = 25/202 (12%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISD-------TFPSWLGTLPKLNVLILRSNIF 58
           S+N             S L  + L    +++                  L  + LR N  
Sbjct: 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500

Query: 59  YGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILA 118
             + ++         L  IDLS N FS   P++                        I  
Sbjct: 501 TKLSDD-FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF-------------GIRN 545

Query: 119 GIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGR 178
                 NR +   P  I     L  L +  N+++  +   +    N+  LD+ +      
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISI 602

Query: 179 IPQQLVELTFLEFFNVSDNYLT 200
               +        + +  +   
Sbjct: 603 DLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 96.6 bits (241), Expect = 1e-22
 Identities = 27/219 (12%), Positives = 60/219 (27%), Gaps = 43/219 (19%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQIS----DTFPSWLGTLPKLNVLILRSNIFYGV 61
                 GR+P ++   ++LE L LG++          P  +               +   
Sbjct: 89  EGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKT 148

Query: 62  IEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGII 121
             +      FS L    ++++    ++   S +                         I 
Sbjct: 149 FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK-------------------DTQIG 189

Query: 122 LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLI-------------------PSSLGNL 162
             +N     +  ++  L  L+   +  +                              NL
Sbjct: 190 QLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL 248

Query: 163 TNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTG 201
            +L  +++ N     ++P  L  L  ++  NV+ N    
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.4 bits (230), Expect = 5e-21
 Identities = 23/210 (10%), Positives = 54/210 (25%), Gaps = 38/210 (18%)

Query: 6   SHNLFEGRIPRSLI--NCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIE 63
               ++          + S L    + +     +         K   +   SN    V  
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-- 198

Query: 64  EPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILS 123
             +     +KLR   + N+ F      +++   N                          
Sbjct: 199 -SKAVMRLTKLRQFYMGNSPFVAENICEAWENEN------------------------SE 233

Query: 124 NNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF-------- 175
             +          NLK L  + +        +P+ L  L  ++ ++++  +         
Sbjct: 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD 293

Query: 176 AGRIPQQLVELTFLEFFNVSDNYL-TGPIP 204
             +          ++   +  N L T P+ 
Sbjct: 294 DWQALADAPVGEKIQIIYIGYNNLKTFPVE 323

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.4 bits (165), Expect = 9e-13
 Identities = 16/119 (13%), Positives = 35/119 (29%), Gaps = 6/119 (5%)

Query: 117 LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG----LIPSSLGNLTNLESLDLSN 172
           + G+ L      G +P +I  L  L+VL L  +  +       P  +    + E      
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 173 KKFAGRIPQQLVELTF--LEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLS 229
             +            F  L    ++ +     I +  +    D      ++ +     +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 4e-11
 Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 4/105 (3%)

Query: 123 SNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAG----R 178
             + +      S+ +   +  L+L+     G +P ++G LT LE L L +          
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 179 IPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL 223
            P+ +      E       +             F +   D  +  
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD 169

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 14/140 (10%), Positives = 34/140 (24%), Gaps = 26/140 (18%)

Query: 72  SKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVG-- 129
            ++  + L     SG +P           I               L  + L ++      
Sbjct: 81  GRVTGLSLEGFGASGRVPD---------AIGQLTE----------LEVLALGSHGEKVNE 121

Query: 130 --AIPASIANLKGLQVLNLQYNNLQGLIPSSLG--NLTNLESLDLSNKKFAGRIPQQLVE 185
               P  I+     +       + Q          + ++L    +++      I +    
Sbjct: 122 RLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181

Query: 186 LTFLEFFNVSDNYLTGPIPQ 205
                      N +T  + +
Sbjct: 182 TLKDTQIGQLSNNITF-VSK 200

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 12/60 (20%), Positives = 22/60 (36%)

Query: 145 NLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIP 204
           N + +        SL +   +  L L     +GR+P  + +LT LE   +  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  101 bits (253), Expect = 4e-24
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 22/212 (10%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPS--WLGTLPKLNVLILRSNIFYGVIE 63
           + N     I    +    L +L L    +S +            L  L L  N   G I 
Sbjct: 336 TMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN---GAII 390

Query: 64  EPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGII-- 121
                 G  +L+ +D  ++         +FL    +  ++    ++Y        GI   
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD----ISYTNTKIDFDGIFLG 446

Query: 122 --------LSNNRFVGAIPASI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
                   ++ N F     +++ AN   L  L+L    L+ +       L  L+ L++S+
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506

Query: 173 KKFAGRIPQQLVELTFLEFFNVSDNYLTGPIP 204
                       +L  L   + S N +     
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 92.8 bits (231), Expect = 3e-21
 Identities = 41/205 (20%), Positives = 64/205 (31%), Gaps = 20/205 (9%)

Query: 6   SHNLFEGRIPRSLIN--CSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIE 63
           S N        S  +   + L  L L          +    L +L  L  + +     + 
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKR-VT 415

Query: 64  EPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAG---- 119
           E        KL  +D+S            FL   ++  +     M  N   D        
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTK-IDFDGIFLGLTSLNTLK----MAGNSFKDNTLSNVFA 470

Query: 120 -------IILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
                  + LS  +           L  LQ+LN+ +NNL  L  S    L +L +LD S 
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530

Query: 173 KKFAGRIPQQLVELTFLEFFNVSDN 197
            +              L FFN+++N
Sbjct: 531 NRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 86.2 bits (214), Expect = 6e-19
 Identities = 38/213 (17%), Positives = 69/213 (32%), Gaps = 27/213 (12%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           +    +      +    K + L +   Q+   FP+    LP L  L L  N         
Sbjct: 293 AGVSIKY--LEDVPKHFKWQSLSIIRCQLKQ-FPT--LDLPFLKSLTLTMN----KGSIS 343

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSF--LCWNAMKIVNARRMMTYNKI---PDILAG- 119
                   L  +DLS N  S      S+  L  N+++ ++    +++N          G 
Sbjct: 344 FKKVALPSLSYLDLSRNALS-FSGCCSYSDLGTNSLRHLD----LSFNGAIIMSANFMGL 398

Query: 120 -----IILSNNRFVGAIPAS-IANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNK 173
                +   ++        S   +L+ L  L++ Y N +         LT+L +L ++  
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458

Query: 174 KFAGRIPQQ-LVELTFLEFFNVSDNYLTGPIPQ 205
            F            T L F ++S   L      
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 83.2 bits (206), Expect = 6e-18
 Identities = 43/206 (20%), Positives = 72/206 (34%), Gaps = 27/206 (13%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S N  +     S  N S+L++L L   +I          L  L+ LIL  N        P
Sbjct: 40  SFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS--P 97

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN 125
            +  G + L  +     + +  L S        +K +N                  +++N
Sbjct: 98  GSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLN------------------VAHN 138

Query: 126 RFVGA-IPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNL----ESLDLSNKKFAGRIP 180
                 +PA  +NL  L  ++L YN +Q +  + L  L        SLD+S       I 
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQ 197

Query: 181 QQLVELTFLEFFNVSDNYLTGPIPQG 206
            Q  +   L    +  N+ +  I + 
Sbjct: 198 DQAFQGIKLHELTLRGNFNSSNIMKT 223

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.0 bits (190), Expect = 5e-16
 Identities = 33/140 (23%), Positives = 51/140 (36%), Gaps = 20/140 (14%)

Query: 71  FSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGA 130
            S  + IDLS N     L S SF  ++ ++ ++                  LS       
Sbjct: 31  PSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLD------------------LSRCEIETI 71

Query: 131 IPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLE 190
              +   L  L  L L  N +Q   P S   LT+LE+L     K A      + +L  L+
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 191 FFNVSDNYLTGPIPQGKQFA 210
             NV+ N++         F+
Sbjct: 132 KLNVAHNFIHS-CKLPAYFS 150

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.0 bits (177), Expect = 3e-14
 Identities = 27/201 (13%), Positives = 62/201 (30%), Gaps = 20/201 (9%)

Query: 6   SHNLFEG-RIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIE- 63
           +HN     ++P    N + L  + L    I     + L  L +   + L  ++    I+ 
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195

Query: 64  -EPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIIL 122
            + +   G   L  + L  N  S N+                 + +    +  ++ G   
Sbjct: 196 IQDQAFQGIK-LHELTLRGNFNSSNIMKTCL------------QNLAGLHVHRLILGEFK 242

Query: 123 SNNRFVGAIPASIANLKGLQV--LNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIP 180
                    P+ +  L  + +    L Y N           L N+ ++ L+      +  
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYL 300

Query: 181 QQLVELTFLEFFNVSDNYLTG 201
           + + +    +  ++    L  
Sbjct: 301 EDVPKHFKWQSLSIIRCQLKQ 321

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.1 bits (159), Expect = 5e-12
 Identities = 28/157 (17%), Positives = 50/157 (31%), Gaps = 17/157 (10%)

Query: 6   SHNLFEGRIPRSLI-NCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEE 64
            H+  +     S   +  KL +L +        F      L  LN L +  N F      
Sbjct: 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL- 465

Query: 65  PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKI----PDILAG- 119
                  + L  +DLS  +    +    F   + ++++N    M++N +           
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLN----MSHNNLLFLDSSHYNQL 520

Query: 120 -----IILSNNRFVGAIPASIANLKGLQVLNLQYNNL 151
                +  S NR   +        K L   NL  N++
Sbjct: 521 YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 2/91 (2%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S    E           +L+ L + +  +     S    L  L+ L    N         
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK--G 538

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCW 96
                   L   +L+NN  +     + FL W
Sbjct: 539 ILQHFPKSLAFFNLTNNSVACICEHQKFLQW 569

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 22/98 (22%)

Query: 129 GAIPASIANLKGLQVLNLQYNNL---------------------QGLIPSSLGNLTNLES 167
           G++   I  +  +         L                     + L   S  N + L+ 
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQW 60

Query: 168 LDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 205
           LDLS  +      +    L  L    ++ N +    P 
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 95.3 bits (237), Expect = 6e-22
 Identities = 33/245 (13%), Positives = 71/245 (28%), Gaps = 43/245 (17%)

Query: 6   SHNLFEGRIPR-----SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYG 60
           S+N                       + L   +I         T   ++ +IL +N+   
Sbjct: 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS 711

Query: 61  VIEE-----PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPD 115
           + E               L  IDL  N+ +  L                   + Y     
Sbjct: 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRAT-----------TLPY----- 754

Query: 116 ILAGIILSNNRFVGAIPASIANLKGLQVLNLQY------NNLQGLIPSSLGNLTNLESLD 169
            L+ + +S N F  + P    N   L+   +++      N +    P+ +    +L  L 
Sbjct: 755 -LSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812

Query: 170 LSNKKFAGRIPQQLVELTFLEFFNVSDNYLT-GPIPQGKQFATFDNTSFDGNSGLCGKPL 228
           + +     ++ ++L     L   +++DN      +     +          +        
Sbjct: 813 IGSNDI-RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD----KTQD 865

Query: 229 SKGCE 233
            +GC+
Sbjct: 866 IRGCD 870

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 95.3 bits (237), Expect = 6e-22
 Identities = 32/242 (13%), Positives = 71/242 (29%), Gaps = 39/242 (16%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           +    +GR+P ++   ++L+ L  G +  + +   +       ++   R +      +  
Sbjct: 331 AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK-K 389

Query: 66  RTGCGFSKLRIIDLSNNRFSGN-----LPSKSFLCWNAMKIVNARRMMT----------- 109
                  +L + DL  +  + N     +   S +     +I N    +T           
Sbjct: 390 MFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTK 449

Query: 110 -------YNKIPDI-----LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPS 157
                   +                   +       S +NLK L  + L        +P 
Sbjct: 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD 509

Query: 158 SLGNLTNLESLDLSNKKFAG---------RIPQQLVELTFLEFFNVSDNYLTGPIPQGKQ 208
            L +L  L+SL+++  +            R+         ++ F +  N L    P    
Sbjct: 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASAS 568

Query: 209 FA 210
             
Sbjct: 569 LQ 570

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 94.9 bits (236), Expect = 6e-22
 Identities = 30/230 (13%), Positives = 66/230 (28%), Gaps = 41/230 (17%)

Query: 6   SHNLFEGRIPRSL-INCSKLEFLGLGNYQISDTFPSW--LGTLPKLNVLILRSNIFYGVI 62
            +N  E  IP        ++E LG  + ++    P+     ++  +  +    N      
Sbjct: 603 DYNQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEG 660

Query: 63  EE---PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI--- 116
                            + LS N      P++ F   + +  +     ++ N +  I   
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTII----LSNNLMTSIPEN 715

Query: 117 --------------LAGIILSNNRFVGAIPASIA--NLKGLQVLNLQYNNLQGLIPSSLG 160
                         L  I L  N+    +        L  L  +++ YN      P+   
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL 773

Query: 161 NLTNLESLDL------SNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIP 204
           N + L++  +         +   + P  +     L    +  N +   + 
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VD 822

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 93.0 bits (231), Expect = 3e-21
 Identities = 32/242 (13%), Positives = 65/242 (26%), Gaps = 43/242 (17%)

Query: 6   SHNLFEG---------RIPRSLINCSKLEFLGLGNYQISDTFPSW-LGTLPKLNVLILRS 55
           + N             R+        K++   +G   + +   S  L  + KL +L    
Sbjct: 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582

Query: 56  NIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPD 115
           N     +          KL  + L  N+    +P       + ++ +       +NK+  
Sbjct: 583 N----KVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFS----HNKLKY 633

Query: 116 I-----------LAGIILSNNRFVG-----AIPASIANLKGLQVLNLQYNNLQGLIPSSL 159
           I           +  +  S N+        +             + L YN +Q       
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693

Query: 160 GNLTNLESLDLSNKKF-------AGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATF 212
              + + ++ LSN                       L   ++  N LT  +    +  T 
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTL 752

Query: 213 DN 214
             
Sbjct: 753 PY 754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 85.7 bits (212), Expect = 8e-19
 Identities = 31/235 (13%), Positives = 71/235 (30%), Gaps = 33/235 (14%)

Query: 5   RSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEE 64
           +  +++  +    L N  ++  L L  +      P  +G L +L VL   ++        
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365

Query: 65  PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI-----LAG 119
              G       + +   +R   +           + + +  +    N+ P++      + 
Sbjct: 366 F--GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA-INRNPEMKPIKKDSR 422

Query: 120 IILSNNRFVG------AIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTN--------- 164
           I L + +          I  +I  L  LQ++    +       +      N         
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482

Query: 165 ----------LESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQF 209
                     L  ++L N     ++P  L +L  L+  N++ N           +
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 3e-09
 Identities = 20/132 (15%), Positives = 44/132 (33%), Gaps = 5/132 (3%)

Query: 75  RIIDLSNNRFSGNLPSKSFLC--WNAMKIVNARRMMTYNKIPDI--LAGIILSNNRFVGA 130
             +D  N R+     + +     WN  K ++         + +   + G+ L+     G 
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR 338

Query: 131 IPASIANLKGLQVLNLQYNNLQGLIP-SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFL 189
           +P +I  L  L+VL+   ++            LT   S +  ++         L     L
Sbjct: 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398

Query: 190 EFFNVSDNYLTG 201
              ++  + +  
Sbjct: 399 NLSDLLQDAINR 410

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 25/178 (14%), Positives = 54/178 (30%), Gaps = 29/178 (16%)

Query: 6   SHNLFE-------GRIPRSLINCSKLEFLGLGNYQISDTFPSW-LGTLPKLNVLILRSNI 57
           S+NL              +  N   L  + L   +++     +   TLP L+ + +  N 
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC 764

Query: 58  FYGVIEEPRTGCGFSKLRIIDL------SNNRFSGNLPSKSFLCWNAMKIVNARRMMTYN 111
           F      P      S+L+   +        NR     P+       ++  +     +  N
Sbjct: 765 FSSF---PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT-GITTCPSLIQLQ----IGSN 816

Query: 112 KIPDILAGII-------LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNL 162
            I  +   +        +++N  +     S+       +  L Y+  Q +       +
Sbjct: 817 DIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGI 874

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.8 bits (231), Expect = 3e-21
 Identities = 42/216 (19%), Positives = 80/216 (37%), Gaps = 23/216 (10%)

Query: 6   SHNLFEGRI-PRSLINCSKLEFLGLGNYQI--SDTFPSWLGTLPKLNVLILRSNIFYGVI 62
             N     +    L N   L  L L +  I  SD     L  L  L  L L  N    + 
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392

Query: 63  EEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGII- 121
            E    C   +L ++DL+  R         F   + +K++N    ++++ +      +  
Sbjct: 393 TEAFKEC--PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN----LSHSLLDISSEQLFD 446

Query: 122 ---------LSNNRFVGAI---PASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLD 169
                    L  N F         S+  L  L++L L + +L  +   +  +L  +  +D
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506

Query: 170 LSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 205
           LS+ +      + L  L  + + N++ N+++  +P 
Sbjct: 507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.8 bits (231), Expect = 3e-21
 Identities = 35/208 (16%), Positives = 65/208 (31%), Gaps = 24/208 (11%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLG--TLPKLNVLILRSNIFYGVIE 63
           + N   G I     + +  + L  G  Q        L   T+  L +          +  
Sbjct: 187 NGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245

Query: 64  EPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILS 123
               G     +  I+L  + F   + S +F C++ ++ ++                  L+
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELD------------------LT 286

Query: 124 NNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLS-NKKFAGRIPQQ 182
                  +P+ +  L  L+ L L  N  + L   S  N  +L  L +  N K        
Sbjct: 287 ATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

Query: 183 LVELTFLEFFNVSDNYLTGPIPQGKQFA 210
           L  L  L   ++S + +        Q  
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLR 373

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.5 bits (225), Expect = 2e-20
 Identities = 35/211 (16%), Positives = 65/211 (30%), Gaps = 24/211 (11%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S N+       +      L FL L   QI         +  +L+ L+L +N    + E  
Sbjct: 41  SFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA 100

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN 125
            +G     L+ +       S  +          ++ +                   L +N
Sbjct: 101 LSGP--KALKHLFFIQTGISS-IDFIPLHNQKTLESLY------------------LGSN 139

Query: 126 RFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLE--SLDLSNKKFAGRIPQQL 183
                        + L+VL+ Q N +  L    + +L      SL+L+    AG I    
Sbjct: 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGA 198

Query: 184 VELTFLEFFNVSDNYLTGPIPQGKQFATFDN 214
            +    +  N         I +G + +T  +
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 89.7 bits (223), Expect = 3e-20
 Identities = 38/211 (18%), Positives = 74/211 (35%), Gaps = 22/211 (10%)

Query: 6   SHNLFE--GRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIE 63
           SH+  E        L N S L+ L L   +            P+L +L L         +
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV-KD 416

Query: 64  EPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKI-------PDI 116
                     L++++LS++        + F    A++ +N    +  N          + 
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLN----LQGNHFPKGNIQKTNS 471

Query: 117 LAG------IILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDL 170
           L        ++LS          +  +LK +  ++L +N L      +L +L  +  L+L
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNL 530

Query: 171 SNKKFAGRIPQQLVELTFLEFFNVSDNYLTG 201
           ++   +  +P  L  L+     N+  N L  
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.4 bits (204), Expect = 9e-18
 Identities = 36/206 (17%), Positives = 72/206 (34%), Gaps = 27/206 (13%)

Query: 6   SHNLFEGRIPRSLINCSK--LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIE 63
                E   P       +  +E + L  +   +   +       L  L L +     +  
Sbjct: 236 EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-- 293

Query: 64  EPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILS 123
            P    G S L+ + LS N+F   L   S   + ++  ++                  + 
Sbjct: 294 -PSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLS------------------IK 333

Query: 124 NNRFVGAI-PASIANLKGLQVLNLQYNNLQ--GLIPSSLGNLTNLESLDLSNKKFAGRIP 180
            N     +    + NL+ L+ L+L +++++        L NL++L+SL+LS  +      
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393

Query: 181 QQLVELTFLEFFNVSDNYLTGPIPQG 206
           +   E   LE  +++   L     Q 
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQS 419

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.0 bits (203), Expect = 1e-17
 Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 11/208 (5%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
                       L N   LE L LG+  IS           KL VL  ++N  + + +E 
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI-------LA 118
            +    +    ++L+ N  +G +   +F       +              +       L 
Sbjct: 173 MSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW 231

Query: 119 GIILSNNRFVGAIPASIANLKG--LQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFA 176
                +       PA    L    ++ +NLQ +    +  ++    + L+ LDL+    +
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291

Query: 177 GRIPQQLVELTFLEFFNVSDNYLTGPIP 204
             +P  LV L+ L+   +S N       
Sbjct: 292 -ELPSGLVGLSTLKKLVLSANKFENLCQ 318

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.9 bits (195), Expect = 1e-16
 Identities = 35/211 (16%), Positives = 60/211 (28%), Gaps = 25/211 (11%)

Query: 13  RIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFS 72
            IP +L   +  E L      +     +    L  L  L L     Y +     T     
Sbjct: 26  EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI--HEDTFQSQH 81

Query: 73  KLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIP 132
           +L  + L+ N     +   +     A+K +                              
Sbjct: 82  RLDTLVLTANPLIF-MAETALSGPKALKHLF------------------FIQTGISSIDF 122

Query: 133 ASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLE-- 190
             + N K L+ L L  N++  +          L+ LD  N        + +  L      
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 191 FFNVSDNYLTGPIPQGKQFATFDNTSFDGNS 221
             N++ N + G  P     A F + +F G  
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 36/197 (18%), Positives = 64/197 (32%), Gaps = 20/197 (10%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEE- 64
                  + P      S L+ + +    +    P  +     L  L L  N     +   
Sbjct: 89  RSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN----PLRAL 142

Query: 65  PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSN 124
           P +    ++LR + +        LP        + +                L  + L  
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN----------LQSLRLEW 192

Query: 125 NRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLV 184
                ++PASIANL+ L+ L ++ + L  L   ++ +L  LE LDL         P    
Sbjct: 193 TGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFG 250

Query: 185 ELTFLEFFNVSD-NYLT 200
               L+   + D + L 
Sbjct: 251 GRAPLKRLILKDCSNLL 267

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 79.2 bits (196), Expect = 4e-17
 Identities = 36/211 (17%), Positives = 67/211 (31%), Gaps = 24/211 (11%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSN-------IF 58
                   +P ++   + LE L L    +    P+ + +L +L  L +R+          
Sbjct: 112 DAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP 169

Query: 59  YGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILA 118
               +      G   L+ + L       +LP+ S      +K +  R     + +  +  
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIR-SLPA-SIANLQNLKSLKIR----NSPLSALGP 223

Query: 119 GI---------ILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLD 169
            I          L     +   P        L+ L L+  +    +P  +  LT LE LD
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283

Query: 170 LSNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200
           L       R+P  + +L       V  +   
Sbjct: 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 30/180 (16%), Positives = 51/180 (28%), Gaps = 23/180 (12%)

Query: 8   NLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRT 67
            L              L+ L L    I  + P+ +  L  L  L +R++    +      
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL---GPA 224

Query: 68  GCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRF 127
                KL  +DL       N P                           L  +IL +   
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAP-------------------LKRLILKDCSN 265

Query: 128 VGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELT 187
           +  +P  I  L  L+ L+L+       +PS +  L     + +     A     + V   
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 22/199 (11%), Positives = 49/199 (24%), Gaps = 40/199 (20%)

Query: 13  RIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRT--GCG 70
                L    +                         N   + +     +           
Sbjct: 27  PYHDVLSQWQRHYNADR-------NRWHSAWRQANSNNPQIETRTGRALKATADLLEDAT 79

Query: 71  FSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGA 130
                 ++L +       P ++F   +                   L  + +     +  
Sbjct: 80  QPGRVALELRSVPLP-QFPDQAFRLSH-------------------LQHMTIDAAGLM-E 118

Query: 131 IPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIP---------Q 181
           +P ++    GL+ L L  N L+ L P+S+ +L  L  L +        +P          
Sbjct: 119 LPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 182 QLVELTFLEFFNVSDNYLT 200
           +   L  L+   +    + 
Sbjct: 178 EHQGLVNLQSLRLEWTGIR 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 18/132 (13%), Positives = 38/132 (28%), Gaps = 6/132 (4%)

Query: 72  SKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI-LAGIILSNNRFVGA 130
           S    +    +             W      +  R  +  +  +     I     R + A
Sbjct: 12  SGRENLYFQGSTALRPYHD-VLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70

Query: 131 IPASIANLK--GLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTF 188
               + +    G   L L+   L    P     L++L+ + +        +P  + +   
Sbjct: 71  TADLLEDATQPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAG 128

Query: 189 LEFFNVSDNYLT 200
           LE   ++ N L 
Sbjct: 129 LETLTLARNPLR 140

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.5 bits (199), Expect = 4e-17
 Identities = 42/211 (19%), Positives = 73/211 (34%), Gaps = 18/211 (8%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
             N  +        +   LE L L    +S   P     L  L  L LRSN    +    
Sbjct: 40  GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI--PL 97

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAG------ 119
               G S L  +D+S N+    L    F     +K +     +  N +  I         
Sbjct: 98  GVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLE----VGDNDLVYISHRAFSGLN 152

Query: 120 ----IILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF 175
               + L           ++++L GL VL L++ N+  +   S   L  L+ L++S+  +
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

Query: 176 AGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 206
              +    +    L   +++   LT  +P  
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTA-VPYL 242

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.9 bits (174), Expect = 5e-14
 Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 19/202 (9%)

Query: 13  RIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFS 72
            +P  +   ++   L LG  +I         + P L  L L  NI   V  EP       
Sbjct: 25  AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV--EPGAFNNLF 80

Query: 73  KLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGI----------IL 122
            LR + L +NR    +P   F   + +  ++    ++ NKI  +L  +           +
Sbjct: 81  NLRTLGLRSNRLK-LIPLGVFTGLSNLTKLD----ISENKIVILLDYMFQDLYNLKSLEV 135

Query: 123 SNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQ 182
            +N  V     + + L  L+ L L+  NL  +   +L +L  L  L L +          
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195

Query: 183 LVELTFLEFFNVSDNYLTGPIP 204
              L  L+   +S       + 
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMT 217

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.4 bits (170), Expect = 2e-13
 Identities = 36/197 (18%), Positives = 71/197 (36%), Gaps = 21/197 (10%)

Query: 15  PRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKL 74
            R+    + LE L L    ++      L  L  L VL LR      +     +     +L
Sbjct: 145 HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI--RDYSFKRLYRL 202

Query: 75  RIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI----------LAGIILSN 124
           +++++S+  +   +        N +  ++    +T+  +  +          L  + LS 
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLN-LTSLS----ITHCNLTAVPYLAVRHLVYLRFLNLSY 257

Query: 125 NRFVGAIPASI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQL 183
           N     I  S+   L  LQ + L    L  + P +   L  L  L++S  +    + + +
Sbjct: 258 NPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESV 315

Query: 184 VE-LTFLEFFNVSDNYL 199
              +  LE   +  N L
Sbjct: 316 FHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 68.2 bits (167), Expect = 4e-13
 Identities = 32/205 (15%), Positives = 69/205 (33%), Gaps = 17/205 (8%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
             N  +          S L  L +   +I          L  L  L +  N    +    
Sbjct: 88  RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI--SH 145

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI--------- 116
           R   G + L  + L     + ++P+++    + + ++     + +  I  I         
Sbjct: 146 RAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLR----LRHLNINAIRDYSFKRLY 200

Query: 117 -LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF 175
            L  + +S+  ++  +  +      L  L++ + NL  +   ++ +L  L  L+LS    
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 176 AGRIPQQLVELTFLEFFNVSDNYLT 200
           +      L EL  L+   +    L 
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 23/148 (15%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           SH  +   +  + +    L  L + +  ++      +  L  L  L L  N    +  E 
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI--EG 265

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN 125
                  +L+ I L   + +  +   +F   N ++++N                  +S N
Sbjct: 266 SMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLN------------------VSGN 306

Query: 126 RFVGAIPASI-ANLKGLQVLNLQYNNLQ 152
           +    +  S+  ++  L+ L L  N L 
Sbjct: 307 QLT-TLEESVFHSVGNLETLILDSNPLA 333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 79.1 bits (196), Expect = 6e-17
 Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 35/194 (18%)

Query: 20  NCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL 79
           N + L  L L   QI D  P  L +L  L+      N     I +       ++L  + +
Sbjct: 175 NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ----ITDITPVANMTRLNSLKI 228

Query: 80  SNNRFS-----GNLPSKSFLCWNAMKIVNARRMMTYNKIPDI--------LAGIILSNNR 126
            NN+ +      NL   ++L             +  N+I DI        L  + + +N+
Sbjct: 229 GNNKITDLSPLANLSQLTWL------------EIGTNQISDINAVKDLTKLKMLNVGSNQ 276

Query: 127 FVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVEL 186
                 + + NL  L  L L  N L       +G LTNL +L LS        P  L  L
Sbjct: 277 ISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASL 332

Query: 187 TFLEFFNVSDNYLT 200
           + ++  + ++  + 
Sbjct: 333 SKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.7 bits (182), Expect = 4e-15
 Identities = 35/197 (17%), Positives = 67/197 (34%), Gaps = 43/197 (21%)

Query: 13  RIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFS 72
                L N + L +L +   ++ D  P  +  L  L  L L  N     IE+       +
Sbjct: 146 SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ----IEDISPLASLT 199

Query: 73  KLRIIDLSNNRFS-----GNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRF 127
            L       N+ +      N+                            L  + + NN+ 
Sbjct: 200 SLHYFTAYVNQITDITPVANMTR--------------------------LNSLKIGNNKI 233

Query: 128 VGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELT 187
               P  +ANL  L  L +  N +  +  +++ +LT L+ L++ + + +      L  L+
Sbjct: 234 TDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD--ISVLNNLS 287

Query: 188 FLEFFNVSDNYLTGPIP 204
            L    +++N L     
Sbjct: 288 QLNSLFLNNNQLGNEDM 304

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.7 bits (182), Expect = 4e-15
 Identities = 39/211 (18%), Positives = 80/211 (37%), Gaps = 34/211 (16%)

Query: 17  SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRI 76
              + ++     L    ++D        L  +  L++        +   +     + L  
Sbjct: 17  PDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEK----VASIQGIEYLTNLEY 70

Query: 77  IDLSNNRFS-----GNLPSKSFLC--WNAMKIVNARRMMT--------YNKIPDI----- 116
           ++L+ N+ +      NL   + L    N +  ++A + +T         + I DI     
Sbjct: 71  LNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLAN 130

Query: 117 ---LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNK 173
              +  + L  N  +    + ++N+ GL  L +  + ++ + P  + NLT+L SL L+  
Sbjct: 131 LTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187

Query: 174 KFAGRIPQQLVELTFLEFFNVSDNYLTGPIP 204
           +     P  L  LT L +F    N +T   P
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQITDITP 216

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 39/223 (17%), Positives = 69/223 (30%), Gaps = 42/223 (18%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFP-----------------SWLGTLPKL 48
           S N         L   +KLE L L +  + +T                     L   P +
Sbjct: 42  SGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSI 101

Query: 49  NVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMM 108
             L   +N    V             + I L+NN+ +  L      C + ++ ++    +
Sbjct: 102 ETLHAANNNISRVSCS-----RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLD----L 151

Query: 109 TYNKIPDI-----------LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPS 157
             N+I  +           L  + L  N     +   +     L+ L+L  N L   +  
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGP 208

Query: 158 SLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200
              +   +  + L N K    I + L     LE F++  N   
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.8 bits (187), Expect = 7e-16
 Identities = 30/187 (16%), Positives = 68/187 (36%), Gaps = 18/187 (9%)

Query: 20  NCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL 79
           N ++ +   + +  +     S   +   +  L L  N    +         F+KL +++L
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI--SAADLAPFTKLELLNL 65

Query: 80  SNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAG-----IILSNNRFVGAIPAS 134
           S+N           L  + ++ ++    +  N + ++L G     +  +NN     +  S
Sbjct: 66  SSNVLY-ETLDLESL--STLRTLD----LNNNYVQELLVGPSIETLHAANNNI-SRVSCS 117

Query: 135 IANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAG-RIPQQLVELTFLEFFN 193
               +G + + L  N +  L     G  + ++ LDL   +       +       LE  N
Sbjct: 118 R--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 194 VSDNYLT 200
           +  N++ 
Sbjct: 176 LQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 3/87 (3%)

Query: 122 LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQ 181
           ++++    A+ +   +   ++ L+L  N L  +  + L   T LE L+LS+         
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TL 74

Query: 182 QLVELTFLEFFNVSDNYLTGPIPQGKQ 208
            L  L+ L   ++++NY+   +  G  
Sbjct: 75  DLESLSTLRTLDLNNNYVQE-LLVGPS 100

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 18/75 (24%), Positives = 31/75 (41%)

Query: 130 AIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFL 189
           AI     N    ++  +  ++L+  + S   +  N++ LDLS    +      L   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 190 EFFNVSDNYLTGPIP 204
           E  N+S N L   + 
Sbjct: 61  ELLNLSSNVLYETLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 77.6 bits (191), Expect = 3e-16
 Identities = 27/187 (14%), Positives = 66/187 (35%), Gaps = 18/187 (9%)

Query: 20  NCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL 79
           N ++ +   + +  +     S   +   +  L L  N    +         F+KL +++L
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI--SAADLAPFTKLELLNL 65

Query: 80  SNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI-----LAGIILSNNRFVGAIPAS 134
           S+N              + ++ ++    +  N + ++     +  +  +NN     +  S
Sbjct: 66  SSNVLY-ETLD--LESLSTLRTLD----LNNNYVQELLVGPSIETLHAANNNI-SRVSCS 117

Query: 135 IANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAG-RIPQQLVELTFLEFFN 193
               +G + + L  N +  L     G  + ++ LDL   +       +       LE  N
Sbjct: 118 R--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 194 VSDNYLT 200
           +  N++ 
Sbjct: 176 LQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 75.7 bits (186), Expect = 1e-15
 Identities = 46/217 (21%), Positives = 77/217 (35%), Gaps = 29/217 (13%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           + +  +  +     +   ++ L L    +S    + L    KL +L L SN    V+ E 
Sbjct: 18  TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN----VLYET 73

Query: 66  RTGCGFSKLRIIDLSNNRFS--GNLPS--KSFLCWNAMKIVNARRM-------MTYNKIP 114
                 S LR +DL+NN        PS        N +  V+  R        +  NKI 
Sbjct: 74  LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT 133

Query: 115 DILAGII----------LSNNRFVG-AIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLT 163
            +               L  N           A+   L+ LNLQYN +  +         
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV--VFA 191

Query: 164 NLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200
            L++LDLS+ K A  +  +      + + ++ +N L 
Sbjct: 192 KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.9 bits (153), Expect = 3e-11
 Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 3/87 (3%)

Query: 122 LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQ 181
           ++++    A+ +   +   ++ L+L  N L  +  + L   T LE L+LS+         
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TL 74

Query: 182 QLVELTFLEFFNVSDNYLTGPIPQGKQ 208
            L  L+ L   ++++NY+   +  G  
Sbjct: 75  DLESLSTLRTLDLNNNYVQE-LLVGPS 100

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.6 bits (147), Expect = 1e-10
 Identities = 18/75 (24%), Positives = 31/75 (41%)

Query: 130 AIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFL 189
           AI     N    ++  +  ++L+  + S   +  N++ LDLS    +      L   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 190 EFFNVSDNYLTGPIP 204
           E  N+S N L   + 
Sbjct: 61  ELLNLSSNVLYETLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 21/222 (9%), Positives = 53/222 (23%), Gaps = 19/222 (8%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S N     +     + + + ++ L N ++       L     L    LR N F+      
Sbjct: 199 SSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC-GTLR 255

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMM---TYNKIPDILAGIIL 122
                  +++ +     +    L  ++        + +              D L  +  
Sbjct: 256 DFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKR 312

Query: 123 SNNRF-------VGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF 175
             +            +     N    + ++      + +I           +L+   K  
Sbjct: 313 KEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372

Query: 176 AGRIP---QQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 214
             ++    +   EL       V    L     +         
Sbjct: 373 DEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRA 414

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.5 bits (186), Expect = 2e-15
 Identities = 33/197 (16%), Positives = 63/197 (31%), Gaps = 21/197 (10%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S N         L  C+ L+ L L + +I+        +L  L  L L  N    +    
Sbjct: 34  SFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN 125
                 S L+ ++L  N +     +  F     ++ +                   + N 
Sbjct: 94  FGPL--SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR------------------IGNV 133

Query: 126 RFVGAIPA-SIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLV 184
                I     A L  L  L ++  +L+     SL ++ ++  L L   + A  +     
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193

Query: 185 ELTFLEFFNVSDNYLTG 201
            L+ + +  + D  L  
Sbjct: 194 ILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.8 bits (166), Expect = 6e-13
 Identities = 39/202 (19%), Positives = 66/202 (32%), Gaps = 22/202 (10%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTF---PSWLGTLPKLNVLILRSNIFYGVI 62
            ++           +   LEFL L    + + +    +  G  P L  L+L  N    + 
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 63  EEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGI-- 120
           +          L  +D+S N F       S      M+ +N    ++   I  +   I  
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFHPMPD--SCQWPEKMRFLN----LSSTGIRVVKTCIPQ 431

Query: 121 -----ILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF 175
                 +SNN    +       L  LQ L +  N L+ L  +SL     L  + +S  + 
Sbjct: 432 TLEVLDVSNNNL-DSFS---LFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQL 485

Query: 176 AGRIPQQLVELTFLEFFNVSDN 197
                     LT L+   +  N
Sbjct: 486 KSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.4 bits (157), Expect = 9e-12
 Identities = 32/228 (14%), Positives = 66/228 (28%), Gaps = 15/228 (6%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
             +        +  +   LE L L +  +S    SW G L  L  L L  N  Y  +   
Sbjct: 58  KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVT 116

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGII---- 121
                 + L+ + + N      +    F    ++  +     +    + +  +  +    
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE----IKALSLRNYQSQSLKSIR 172

Query: 122 ------LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF 175
                 L  +     +      L  ++ L L+  NL     S L        +     + 
Sbjct: 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232

Query: 176 AGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL 223
           +    +   EL  L  + +  + +            F+ +  D  S L
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 29/219 (13%), Positives = 59/219 (26%), Gaps = 24/219 (10%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
                     +SL +   +  L L   + +     +   L  +  L LR          P
Sbjct: 156 KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP 215

Query: 66  RTG---------CGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPD- 115
                         F    + D S N     L     L            +  +N     
Sbjct: 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275

Query: 116 -----------ILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTN 164
                       +  + +        +    + L+ ++ + ++ + +  +  S   +L +
Sbjct: 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335

Query: 165 LESLDLSNKKFAGRIPQQLVE---LTFLEFFNVSDNYLT 200
           LE LDLS         +          L+   +S N+L 
Sbjct: 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 38/190 (20%), Positives = 61/190 (32%), Gaps = 25/190 (13%)

Query: 13  RIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFS 72
            IP  L   + ++ L L   +I+      L     L VLIL+S+    +  E        
Sbjct: 19  SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI--EGDAFYSLG 74

Query: 73  KLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVG-AI 131
            L  +DLS+N  S +L S  F                       L  + L  N +    +
Sbjct: 75  SLEHLDLSDNHLS-SLSSSWF--GPLSS----------------LKYLNLMGNPYQTLGV 115

Query: 132 PASIANLKGLQVLNLQYNNLQGLIP-SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLE 190
            +   NL  LQ L +        I       LT+L  L++          Q L  +  + 
Sbjct: 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175

Query: 191 FFNVSDNYLT 200
              +  +   
Sbjct: 176 HLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 1/97 (1%)

Query: 113 IPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           +   +  + LS N+        +     LQVL L+ + +  +   +  +L +LE LDLS+
Sbjct: 24  LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 173 KKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQF 209
              +         L+ L++ N+  N     +     F
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQT-LGVTSLF 119

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 31/154 (20%), Positives = 48/154 (31%), Gaps = 19/154 (12%)

Query: 6   SHNLFE--GRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIE 63
           S N      +    L+    L  L +         P       K+  L L S     V  
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-- 425

Query: 64  EPRTGCGFSKLRIIDLSNNR---FSGNLPS--KSFLCWNAMKIVNARRMMTYNKIPDILA 118
                C    L ++D+SNN    FS  LP   + ++  N +K +    +         L 
Sbjct: 426 ---KTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPV------LL 476

Query: 119 GIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQ 152
            + +S N+           L  LQ + L  N   
Sbjct: 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.0 bits (187), Expect = 2e-15
 Identities = 52/252 (20%), Positives = 78/252 (30%), Gaps = 45/252 (17%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S+NL       +     K+ ++ L    I+         L KL  L LR N         
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL------- 374

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSF------LCWNAMKIVNARRMMT---------- 109
            T      +  I LS N+    LP  +       L  N ++ ++    +           
Sbjct: 375 TTIHFIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433

Query: 110 -YNKIPDILAG-----------IILSNNRFVGAIPASI-----ANLKGLQVLNLQYNNLQ 152
             N+                  + L  N    A    +       L  LQVL L +N L 
Sbjct: 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493

Query: 153 GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATF 212
            L P    +LT L  L L++ +        L     LE  ++S N L  P P    F + 
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPD--VFVSL 549

Query: 213 DNTSFDGNSGLC 224
                  N  +C
Sbjct: 550 SVLDITHNKFIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.5 bits (183), Expect = 5e-15
 Identities = 41/181 (22%), Positives = 65/181 (35%), Gaps = 19/181 (10%)

Query: 20  NCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL 79
           N   ++  G  +  IS +    L     +       +      +    G   S +R +DL
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273

Query: 80  SNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLK 139
           S+     +L S+ F     +K++N                  L+ N+       +   L 
Sbjct: 274 SHGFVF-SLNSRVFETLKDLKVLN------------------LAYNKINKIADEAFYGLD 314

Query: 140 GLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYL 199
            LQVLNL YN L  L  S+   L  +  +DL     A    Q    L  L+  ++ DN L
Sbjct: 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

Query: 200 T 200
           T
Sbjct: 375 T 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.9 bits (179), Expect = 2e-14
 Identities = 47/212 (22%), Positives = 76/212 (35%), Gaps = 30/212 (14%)

Query: 13  RIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFS 72
           ++P+ L   +  E L L    I     S    L +L +L L S      I +        
Sbjct: 18  QVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI-DKEAFRNLP 73

Query: 73  KLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAI- 131
            LRI+DL +++    L   +F     +  +                   L       A+ 
Sbjct: 74  NLRILDLGSSKIY-FLHPDAFQGLFHLFELR------------------LYFCGLSDAVL 114

Query: 132 -PASIANLKGLQVLNLQYNNLQGL-IPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTF- 188
                 NLK L  L+L  N ++ L +  S G L +L+S+D S+ +       +L  L   
Sbjct: 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174

Query: 189 -LEFFNVSDNYLTGPIPQG--KQFATFDNTSF 217
            L FF+++ N L   +     K    F N   
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.9 bits (179), Expect = 2e-14
 Identities = 42/225 (18%), Positives = 71/225 (31%), Gaps = 29/225 (12%)

Query: 6   SHNLFEGRI-PRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEE 64
                   I   +  N   L  L LG+ +I    P     L  L  L L        + +
Sbjct: 56  GSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK 115

Query: 65  PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSN 124
                    L  +DLS N+        SF   N++K ++                   S+
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID------------------FSS 157

Query: 125 NRFVGAIPASIANLKG--LQVLNLQYNNLQGLIPSSLGNLTN------LESLDLSNKKFA 176
           N+        +  L+G  L   +L  N+L   +    G   N      LE LD+S   + 
Sbjct: 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217

Query: 177 GRIPQQLV-ELTFLEFFN-VSDNYLTGPIPQGKQFATFDNTSFDG 219
             I       ++  + F+ +  +++ G           D  +F G
Sbjct: 218 VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.8 bits (158), Expect = 7e-12
 Identities = 38/209 (18%), Positives = 82/209 (39%), Gaps = 30/209 (14%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNV--LILRSNIFYGVIE 63
             N        SLI    +   G G + I D   +    L + +V  L L     + +  
Sbjct: 224 FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL-- 281

Query: 64  EPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI------- 116
             R       L++++L+ N+ +  +  ++F   + ++++N    ++YN + ++       
Sbjct: 282 NSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLN----LSYNLLGELYSSNFYG 336

Query: 117 ---LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNK 173
              +A I L  N        +   L+ LQ L+L+ N L     +++  + ++  + LS  
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGN 391

Query: 174 KFAGRIPQQLVELTF-LEFFNVSDNYLTG 201
           K        L ++       ++S+N L  
Sbjct: 392 KLV-----TLPKINLTANLIHLSENRLEN 415

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 11/88 (12%)

Query: 137 NLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRI-PQQLVELTFLEFFNVS 195
            L   + L L +N ++ +  SS   L  L+ L+L ++     I  +    L  L   ++ 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 196 DNYLTGPIPQGKQFATFDNTSFDGNSGL 223
            + +                +F G   L
Sbjct: 82  SSKIY----------FLHPDAFQGLFHL 99

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.5 bits (181), Expect = 3e-15
 Identities = 40/203 (19%), Positives = 68/203 (33%), Gaps = 18/203 (8%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
             N        S   C  L  L L +  ++    +    L  L  L L  N     ++ P
Sbjct: 40  HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-P 98

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI--------- 116
            T  G  +L  + L        L    F    A++ +     +  N +  +         
Sbjct: 99  ATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLY----LQDNALQALPDDTFRDLG 153

Query: 117 -LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF 175
            L  + L  NR       +   L  L  L L  N +  + P +  +L  L +L L     
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 176 AGRIPQQ-LVELTFLEFFNVSDN 197
           +  +P + L  L  L++  ++DN
Sbjct: 214 S-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 36/194 (18%), Positives = 71/194 (36%), Gaps = 19/194 (9%)

Query: 24  LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR 83
            + + L   +IS    +       L +L L SN+   +  +     G + L  +DLS+N 
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI--DAAAFTGLALLEQLDLSDNA 91

Query: 84  FSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGI----------ILSNNRFVGAIPA 133
              ++   +F     +  ++    +    + ++  G+           L +N    A+P 
Sbjct: 92  QLRSVDPATFHGLGRLHTLH----LDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPD 146

Query: 134 SI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFF 192
               +L  L  L L  N +  +   +   L +L+ L L   + A   P    +L  L   
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 193 NVSDNYLTGPIPQG 206
            +  N L+  +P  
Sbjct: 207 YLFANNLSA-LPTE 219

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 1/89 (1%)

Query: 113 IPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           IP     I L  NR      AS    + L +L L  N L  +  ++   L  LE LDLS+
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 173 KKFAGRIPQQ-LVELTFLEFFNVSDNYLT 200
                 +       L  L   ++    L 
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 74.1 bits (182), Expect = 5e-15
 Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 13/161 (8%)

Query: 20  NCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL 79
             S    L   N  ++DT     G L +L  LIL+ N    + +          L+ +D+
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381

Query: 80  SNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGII--------LSNNRFVGAI 131
           S N  S +          ++  +N    M+ N + D +   +        L +N+   +I
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLN----MSSNILTDTIFRCLPPRIKVLDLHSNKIK-SI 436

Query: 132 PASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           P  +  L+ LQ LN+  N L+ +       LT+L+ + L  
Sbjct: 437 PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.6 bits (134), Expect = 7e-09
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 113 IPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           +      + +S N       + I +L  L++L + +N +Q L  S       LE LDLS+
Sbjct: 19  LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 173 KKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQF 209
            K         V L  L   ++S N     +P  K+F
Sbjct: 79  NKLVKISCHPTVNLKHL---DLSFNAFDA-LPICKEF 111

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 19/146 (13%)

Query: 72  SKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGI----------I 121
            K  I+++S N  S  L +   L  + ++I+     +++N+I  +   +           
Sbjct: 21  QKTTILNISQNYIS-ELWTSDILSLSKLRILI----ISHNRIQYLDISVFKFNQELEYLD 75

Query: 122 LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGL-IPSSLGNLTNLESLDLSNKKFAGRIP 180
           LS+N+    I         L+ L+L +N    L I    GN++ L+ L LS         
Sbjct: 76  LSHNKL-VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSV 132

Query: 181 QQLVELTFLEFFNVSDNYLTGPIPQG 206
             +  L   +   V            
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPE 158

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 34/176 (19%), Positives = 60/176 (34%), Gaps = 24/176 (13%)

Query: 41  WLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMK 100
           W  T+   ++  ++        +   +G     L I  + ++ F     S  +  ++ M 
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMN 303

Query: 101 IVNARRMMTYNKIPDILAGII----------LSNNRFVGAIPASIANLKGLQVLNLQYNN 150
           I N     T +    +                SNN     +  +  +L  L+ L LQ N 
Sbjct: 304 IKN----FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 151 LQGL--IPSSLGNLTNLESLDLSNKKFAGRIP----QQLVELTFLEFFNVSDNYLT 200
           L+ L  I      + +L+ LD+S    +             L  L   N+S N LT
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL---NMSSNILT 412

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.1 bits (117), Expect = 8e-07
 Identities = 29/203 (14%), Positives = 63/203 (31%), Gaps = 23/203 (11%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISD------TFPSWLGTLPKLNVLILRSNIFY 59
           ++  F   +  S+   + LE   +      +      +  + L T PKL+ L L +    
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 60  G-VIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSF-LCWNAMKIVNARRMMTYNKIPDIL 117
                        + +    +SN +  G L  + F     ++K ++  +           
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ----------- 282

Query: 118 AGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAG 177
               + ++ F             + + N   +  + +       ++    LD SN     
Sbjct: 283 ----VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD 338

Query: 178 RIPQQLVELTFLEFFNVSDNYLT 200
            + +    LT LE   +  N L 
Sbjct: 339 TVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 34/208 (16%), Positives = 74/208 (35%), Gaps = 30/208 (14%)

Query: 18  LINCSKLEFLGLGNYQI-----SDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFS 72
           L+  + + +  + N ++        F     +L  L++  + S++F            FS
Sbjct: 243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI--FS 300

Query: 73  KLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRM-MTYNKIPDILAGI----------I 121
            + I + + +           LC +  KI     +  + N + D +             I
Sbjct: 301 NMNIKNFTVS----GTRMVHMLCPS--KISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354

Query: 122 LSNNRF--VGAIPASIANLKGLQVLNLQYNNLQGLIPSSL-GNLTNLESLDLSNKKFAGR 178
           L  N+   +  I      +K LQ L++  N++             +L SL++S+      
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414

Query: 179 IPQQLVELTFLEFFNVSDNYLTGPIPQG 206
           I + L     ++  ++  N +   IP+ 
Sbjct: 415 IFRCL--PPRIKVLDLHSNKIKS-IPKQ 439

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 32/196 (16%), Positives = 60/196 (30%), Gaps = 25/196 (12%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S N         +++ SKL  L + + +I     S      +L  L L  N    +   P
Sbjct: 29  SQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHP 88

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN 125
                   L+ +DLS N F      K F   + +K +                   LS  
Sbjct: 89  -----TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG------------------LSTT 125

Query: 126 RFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVE 185
               +    IA+L   +VL +               L +  +  L       +    +++
Sbjct: 126 HLEKSSVLPIAHLNISKVLLVLGETY--GEKEDPEGLQDFNTESLHIVFPTNKEFHFILD 183

Query: 186 LTFLEFFNVSDNYLTG 201
           ++     N+  + +  
Sbjct: 184 VSVKTVANLELSNIKC 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.5 bits (181), Expect = 6e-15
 Identities = 42/214 (19%), Positives = 77/214 (35%), Gaps = 25/214 (11%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
             N      P    N   L  L L    +S          PKL  L + +N    +  E 
Sbjct: 101 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI--ED 158

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSF-------LCWNAMKIVNARRMMT-----YNKI 113
            T    + L+ + LS+NR + ++            + +N +  +     +      +N I
Sbjct: 159 DTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 217

Query: 114 PDI-------LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLE 166
             +       L  + L +N       A + N  GL  ++L YN L+ ++      +  LE
Sbjct: 218 NVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275

Query: 167 SLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200
            L +SN +    +      +  L+  ++S N+L 
Sbjct: 276 RLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 33/196 (16%), Positives = 58/196 (29%), Gaps = 31/196 (15%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
            ++         L +  ++E L L + QI +           +  L +  N    +   P
Sbjct: 53  KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL--PP 110

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN 125
                   L ++ L  N  S +LP   F     +  ++                  +SNN
Sbjct: 111 HVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS------------------MSNN 151

Query: 126 RFVGAIPASI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLV 184
                I          LQ L L  N L  +    L  + +L   ++S           L 
Sbjct: 152 NLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL-----STLA 202

Query: 185 ELTFLEFFNVSDNYLT 200
               +E  + S N + 
Sbjct: 203 IPIAVEELDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.5 bits (160), Expect = 3e-12
 Identities = 36/206 (17%), Positives = 62/206 (30%), Gaps = 28/206 (13%)

Query: 15  PRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKL 74
                N  KL  L + N  +             L  L L SN    V            L
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS-----LIPSL 188

Query: 75  RIIDLSNNRFSGNLPSKSFLCW-----NAMKIVNARRM-------MTYNKIPDI------ 116
              ++S N  S  L     +       N++ +V            + +N + D       
Sbjct: 189 FHANVSYNLLS-TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY 247

Query: 117 --LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKK 174
             L  + LS N     +      ++ L+ L +  N L   +      +  L+ LDLS+  
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH 306

Query: 175 FAGRIPQQLVELTFLEFFNVSDNYLT 200
               + +   +   LE   +  N + 
Sbjct: 307 LL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.2 bits (149), Expect = 8e-11
 Identities = 29/165 (17%), Positives = 62/165 (37%), Gaps = 25/165 (15%)

Query: 17  SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRI 76
           +L     +E L   +  I+           +L +L L+ N     + +      +  L  
Sbjct: 200 TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHN----NLTDTAWLLNYPGLVE 252

Query: 77  IDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI---------LAGIILSNNRF 127
           +DLS N     +    F+    ++ +     ++ N++  +         L  + LS+N  
Sbjct: 253 VDLSYNELE-KIMYHPFVKMQRLERLY----ISNNRLVALNLYGQPIPTLKVLDLSHNHL 307

Query: 128 VGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           +  +  +      L+ L L +N++  L    L     L++L LS+
Sbjct: 308 L-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 29/188 (15%), Positives = 63/188 (33%), Gaps = 23/188 (12%)

Query: 14  IPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSK 73
           I  +L        + +        F     TL    ++  +++    +         F +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL--PAALLDSFRQ 70

Query: 74  LRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPA 133
           + +++L++ +    + + +F   + ++ +                   +  N     +P 
Sbjct: 71  VELLNLNDLQIE-EIDTYAFAYAHTIQKLY------------------MGFNAIR-YLPP 110

Query: 134 SI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFF 192
            +  N+  L VL L+ N+L  L      N   L +L +SN              T L+  
Sbjct: 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170

Query: 193 NVSDNYLT 200
            +S N LT
Sbjct: 171 QLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 24/156 (15%), Positives = 49/156 (31%), Gaps = 28/156 (17%)

Query: 17  SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRI 76
            L+N   L  + L   ++          + +L  L + +N    +      G     L++
Sbjct: 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL---NLYGQPIPTLKV 299

Query: 77  IDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIA 136
           +DLS+N    ++                            L  + L +N  V  +  S  
Sbjct: 300 LDLSHNHLL-HVERNQPQFDR-------------------LENLYLDHNSIV-TLKLS-- 336

Query: 137 NLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
               L+ L L +N+       +L    N+    + +
Sbjct: 337 THHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDD 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 51/207 (24%), Positives = 83/207 (40%), Gaps = 30/207 (14%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
            +N      P  L N + L  L L +  ISD   S L  L  L  L   + +      + 
Sbjct: 120 FNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQV-----TDL 170

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI--------L 117
           +     + L  +D+S+N+ S ++   + L    ++ +      T N+I DI        L
Sbjct: 171 KPLANLTTLERLDISSNKVS-DISVLAKL--TNLESLI----ATNNQISDITPLGILTNL 223

Query: 118 AGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAG 177
             + L+ N+       ++A+L  L  L+L  N +  L P  L  LT L  L L   + + 
Sbjct: 224 DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279

Query: 178 RIPQQLVELTFLEFFNVSDNYLTGPIP 204
             P  L  LT L    +++N L    P
Sbjct: 280 ISP--LAGLTALTNLELNENQLEDISP 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 45/195 (23%), Positives = 77/195 (39%), Gaps = 25/195 (12%)

Query: 17  SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRI 76
           +L + + L  L L N QIS+  P  L  L KL  L L +N    +        G + L  
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL----AGLTALTN 291

Query: 77  IDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI--------LAGIILSNNRFV 128
           ++L+ N+   ++   S L    +  +     + +N I DI        L  +   NN+  
Sbjct: 292 LELNENQLE-DISPISNL--KNLTYLT----LYFNNISDISPVSSLTKLQRLFFYNNKVS 344

Query: 129 GAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTF 188
               +S+ANL  +  L+  +N +  L P  L NLT +  L L+++ +          ++ 
Sbjct: 345 D--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSI 400

Query: 189 LEFFNVSDNYLTGPI 203
                     L  P 
Sbjct: 401 PNTVKNVTGALIAPA 415

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 45/201 (22%), Positives = 73/201 (36%), Gaps = 38/201 (18%)

Query: 17  SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRI 76
           +    ++     LG   ++DT       L ++  L          I+        + L  
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL----GIKSIDGVEYLNNLTQ 72

Query: 77  IDLSNNRFS-----GNLPSKSFLCWNAMKIVNARRMMTYNKIPDI--------LAGIILS 123
           I+ SNN+ +      NL     +             M  N+I DI        L G+ L 
Sbjct: 73  INFSNNQLTDITPLKNLTKLVDIL------------MNNNQIADITPLANLTNLTGLTLF 120

Query: 124 NNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQL 183
           NN+     P  + NL  L  L L  N +  +  S+L  LT+L+ L   N+       + L
Sbjct: 121 NNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQV---TDLKPL 173

Query: 184 VELTFLEFFNVSDNYLTGPIP 204
             LT LE  ++S N ++    
Sbjct: 174 ANLTTLERLDISSNKVSDISV 194

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 45/212 (21%), Positives = 77/212 (36%), Gaps = 40/212 (18%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
                   +     +  ++  L      I       +  L  L  +   +N    +    
Sbjct: 32  GKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP-- 85

Query: 66  RTGCGFSKLRIIDLSNNRFS-----GNLPSKSFLCWNAMKIVNARRMMTYNKIPDI---- 116
                 +KL  I ++NN+ +      NL + + L             +  N+I DI    
Sbjct: 86  --LKNLTKLVDILMNNNQIADITPLANLTNLTGL------------TLFNNQITDIDPLK 131

Query: 117 ----LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
               L  + LS+N       ++++ L  LQ L+   N +  L P  L NLT LE LD+S+
Sbjct: 132 NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISS 186

Query: 173 KKFAGRIPQQLVELTFLEFFNVSDNYLTGPIP 204
            K        L +LT LE    ++N ++   P
Sbjct: 187 NKV--SDISVLAKLTNLESLIATNNQISDITP 216

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 32/184 (17%), Positives = 53/184 (28%), Gaps = 43/184 (23%)

Query: 29  LGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFS--- 85
             +  I+  F      L +    +L        + +  +     ++  +           
Sbjct: 9   TQDTPINQIFT--DTALAEKMKTVLGKT----NVTDTVSQTDLDQVTTLQADRLGIKSID 62

Query: 86  --GNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQV 143
               L +                          L  I  SNN+     P  + NL  L  
Sbjct: 63  GVEYLNN--------------------------LTQINFSNNQLTDITP--LKNLTKLVD 94

Query: 144 LNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPI 203
           + +  N +  + P  L NLTNL  L L N +     P  L  LT L    +S N ++   
Sbjct: 95  ILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS 150

Query: 204 PQGK 207
               
Sbjct: 151 ALSG 154

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 28/186 (15%), Positives = 58/186 (31%), Gaps = 24/186 (12%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           + N  E   P  + N   L +L L    ISD  P  + +L KL  L   +N     + + 
Sbjct: 295 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK----VSDV 346

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGI----- 120
            +    + +  +   +N+ S   P  +      +  +            +          
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTPLANL---TRITQLGLN----DQAWTNAPVNYKANVS 399

Query: 121 ---ILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAG 177
               + N       PA+I++       ++ +N             +   ++      F+G
Sbjct: 400 IPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYT-NEVSYTFSQPVTIGKGTTTFSG 458

Query: 178 RIPQQL 183
            + Q L
Sbjct: 459 TVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 6/89 (6%)

Query: 116 ILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF 175
           + +  I  +             L       L   N+   +     +L  + +L       
Sbjct: 3   LGSATITQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 176 AGRIPQQLVELTFLEFFNVSDNYLTGPIP 204
             +    +  L  L   N S+N LT   P
Sbjct: 59  --KSIDGVEYLNNLTQINFSNNQLTDITP 85

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.0 bits (179), Expect = 1e-14
 Identities = 42/214 (19%), Positives = 77/214 (35%), Gaps = 25/214 (11%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
             N      P    N   L  L L    +S          PKL  L + +N    +  E 
Sbjct: 107 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI--ED 164

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSF-------LCWNAMKIVNARRMMT-----YNKI 113
            T    + L+ + LS+NR + ++            + +N +  +     +      +N I
Sbjct: 165 DTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 223

Query: 114 PDI-------LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLE 166
             +       L  + L +N       A + N  GL  ++L YN L+ ++      +  LE
Sbjct: 224 NVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281

Query: 167 SLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200
            L +SN +    +      +  L+  ++S N+L 
Sbjct: 282 RLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.3 bits (164), Expect = 1e-12
 Identities = 36/206 (17%), Positives = 62/206 (30%), Gaps = 28/206 (13%)

Query: 15  PRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKL 74
                N  KL  L + N  +             L  L L SN    V            L
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS-----LIPSL 194

Query: 75  RIIDLSNNRFSGNLPSKSFLCW-----NAMKIVNARRM-------MTYNKIPDI------ 116
              ++S N  S  L     +       N++ +V            + +N + D       
Sbjct: 195 FHANVSYNLLS-TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY 253

Query: 117 --LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKK 174
             L  + LS N     +      ++ L+ L +  N L   +      +  L+ LDLS+  
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH 312

Query: 175 FAGRIPQQLVELTFLEFFNVSDNYLT 200
               + +   +   LE   +  N + 
Sbjct: 313 LL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.6 bits (152), Expect = 3e-11
 Identities = 29/165 (17%), Positives = 62/165 (37%), Gaps = 25/165 (15%)

Query: 17  SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRI 76
           +L     +E L   +  I+           +L +L L+ N     + +      +  L  
Sbjct: 206 TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHN----NLTDTAWLLNYPGLVE 258

Query: 77  IDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI---------LAGIILSNNRF 127
           +DLS N     +    F+    ++ +     ++ N++  +         L  + LS+N  
Sbjct: 259 VDLSYNELE-KIMYHPFVKMQRLERLY----ISNNRLVALNLYGQPIPTLKVLDLSHNHL 313

Query: 128 VGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           +  +  +      L+ L L +N++  L    L     L++L LS+
Sbjct: 314 L-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.6 bits (152), Expect = 4e-11
 Identities = 31/189 (16%), Positives = 65/189 (34%), Gaps = 25/189 (13%)

Query: 14  IPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSK 73
           I  +L        + +        F     TL    ++  +++    +         F +
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL--PAALLDSFRQ 76

Query: 74  LRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPA 133
           + +++L++ +    + + +F   + ++ +                   +  N     +P 
Sbjct: 77  VELLNLNDLQIE-EIDTYAFAYAHTIQKLY------------------MGFNAIR-YLPP 116

Query: 134 SI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQ-LVELTFLEF 191
            +  N+  L VL L+ N+L  L      N   L +L +SN     RI        T L+ 
Sbjct: 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQN 175

Query: 192 FNVSDNYLT 200
             +S N LT
Sbjct: 176 LQLSSNRLT 184

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.5 bits (178), Expect = 2e-14
 Identities = 47/232 (20%), Positives = 77/232 (33%), Gaps = 23/232 (9%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
             N  +     S  +   LE L L    I          L  LN L L  N    +    
Sbjct: 72  HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI--PN 129

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKI----PDILAG-- 119
                 SKL+ + L NN    ++PS +F    +++ ++   +    ++         G  
Sbjct: 130 GAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLD---LGELKRLSYISEGAFEGLS 185

Query: 120 ----IILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF 175
               + L+       IP  +  L  L  L+L  N+L  + P S   L +L+ L +   + 
Sbjct: 186 NLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

Query: 176 AGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNT---SFDGNSGLC 224
                     L  L   N++ N LT  +P    F    +        N   C
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTL-LPHD-LFTPLHHLERIHLHHNPWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.3 bits (149), Expect = 9e-11
 Identities = 43/185 (23%), Positives = 71/185 (38%), Gaps = 27/185 (14%)

Query: 24  LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR 83
              L L   QI     +    L  L +L L  N    +  E     G + L  ++L +NR
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI--EIGAFNGLANLNTLELFDNR 123

Query: 84  FSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASI-ANLKGLQ 142
            +  +P+ +F        V   +          L  + L NN    +IP+     +  L+
Sbjct: 124 LT-TIPNGAF--------VYLSK----------LKELWLRNNPIE-SIPSYAFNRIPSLR 163

Query: 143 VLNLQ-YNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTG 201
            L+L     L  +   +   L+NL  L+L+       IP  L  L  L+  ++S N+L+ 
Sbjct: 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221

Query: 202 PIPQG 206
            I  G
Sbjct: 222 -IRPG 225

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 18/142 (12%)

Query: 71  FSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGI---------- 120
            +  R+++L  N+    +   SF     ++I+     ++ N I  I  G           
Sbjct: 63  STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQ----LSRNHIRTIEIGAFNGLANLNTL 117

Query: 121 ILSNNRFVGAIPASI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRI 179
            L +NR +  IP      L  L+ L L+ N ++ +   +   + +L  LDL   K    I
Sbjct: 118 ELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI 176

Query: 180 PQQ-LVELTFLEFFNVSDNYLT 200
            +     L+ L + N++   L 
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLR 198

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 18/88 (20%), Positives = 38/88 (43%)

Query: 113 IPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           I      + L  N+       S  +L+ L++L L  N+++ +   +   L NL +L+L +
Sbjct: 62  ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121

Query: 173 KKFAGRIPQQLVELTFLEFFNVSDNYLT 200
            +         V L+ L+   + +N + 
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIE 149

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.5 bits (178), Expect = 2e-14
 Identities = 48/232 (20%), Positives = 77/232 (33%), Gaps = 23/232 (9%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
             N  +     +  +   LE L LG   I          L  LN L L  N    +    
Sbjct: 83  MENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI--PS 140

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKI----PDILAG-- 119
                 SKLR + L NN    ++PS +F   N +  +    +    K+         G  
Sbjct: 141 GAFEYLSKLRELWLRNNPIE-SIPSYAF---NRVPSLMRLDLGELKKLEYISEGAFEGLF 196

Query: 120 ----IILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF 175
               + L        +P  +  L GL+ L +  N+   + P S   L++L+ L + N + 
Sbjct: 197 NLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254

Query: 176 AGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNT---SFDGNSGLC 224
           +         L  L   N++ N L+  +P    F             N   C
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNLSS-LPHD-LFTPLRYLVELHLHHNPWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.3 bits (149), Expect = 9e-11
 Identities = 41/185 (22%), Positives = 64/185 (34%), Gaps = 27/185 (14%)

Query: 24  LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR 83
             +L L    I          L  L VL L  N    +  E     G + L  ++L +N 
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI--EVGAFNGLASLNTLELFDNW 134

Query: 84  FSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASI-ANLKGLQ 142
            +  +PS +F            +          L  + L NN    +IP+     +  L 
Sbjct: 135 LT-VIPSGAF--------EYLSK----------LRELWLRNNPIE-SIPSYAFNRVPSLM 174

Query: 143 VLNLQ-YNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTG 201
            L+L     L+ +   +   L NL+ L+L        +P  L  L  LE   +S N+   
Sbjct: 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPE 232

Query: 202 PIPQG 206
            I  G
Sbjct: 233 -IRPG 236

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 18/142 (12%)

Query: 71  FSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGI---------- 120
            S  R ++L  N     + + +F   + ++++     +  N I  I  G           
Sbjct: 74  PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQ----LGRNSIRQIEVGAFNGLASLNTL 128

Query: 121 ILSNNRFVGAIPASI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRI 179
            L +N  +  IP+     L  L+ L L+ N ++ +   +   + +L  LDL   K    I
Sbjct: 129 ELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187

Query: 180 PQQ-LVELTFLEFFNVSDNYLT 200
            +     L  L++ N+    + 
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIK 209

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 113 IPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           IP     + L  N        +  +L  L+VL L  N+++ +   +   L +L +L+L +
Sbjct: 73  IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132

Query: 173 KKFAGRIPQQ-LVELTFLEFFNVSDNYLT 200
                 IP      L+ L    + +N + 
Sbjct: 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIE 160

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 31/168 (18%), Positives = 55/168 (32%), Gaps = 22/168 (13%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFP-SWLGTLPKLNVLILRSNIFYGVIEE 64
           S N     +  + +   +LE L   +  +      S   +L  L  L +           
Sbjct: 381 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA--F 437

Query: 65  PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSN 124
                G S L ++ ++ N F  N     F     +  ++                  LS 
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD------------------LSQ 479

Query: 125 NRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
            +     P +  +L  LQVLN+  N L+ +       LT+L+ + L  
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 71.3 bits (175), Expect = 4e-14
 Identities = 35/216 (16%), Positives = 68/216 (31%), Gaps = 36/216 (16%)

Query: 8   NLFEGRIPRSLINCSKLEFLGLGNYQISDTFP-SWLGTLPKLNVLILRSNIF-------- 58
           + +   I       + +    L +  I      S+      L ++  +   F        
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327

Query: 59  ------YGVIEEPRTGCGFSKLRIIDLSNNRFSG-NLPSKSFLCWNAMKIVNARRMMTYN 111
                         +      L  +DLS N  S     S+S     ++K ++        
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD-------- 379

Query: 112 KIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSS-LGNLTNLESLDL 170
                     LS N  +  + ++   L+ L+ L+ Q++NL+ +   S   +L NL  LD+
Sbjct: 380 ----------LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 171 SNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 206
           S+             L+ LE   ++ N         
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 71.3 bits (175), Expect = 5e-14
 Identities = 38/206 (18%), Positives = 70/206 (33%), Gaps = 27/206 (13%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S N        S  +  +L+ L L   +I         +L  L+ LIL  N    +    
Sbjct: 36  SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL--AL 93

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN 125
               G S L+ +       + +L +        +K +N                  +++N
Sbjct: 94  GAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELN------------------VAHN 134

Query: 126 RF-VGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLE----SLDLSNKKFAGRIP 180
                 +P   +NL  L+ L+L  N +Q +  + L  L  +     SLDLS       I 
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQ 193

Query: 181 QQLVELTFLEFFNVSDNYLTGPIPQG 206
               +   L    + +N+ +  + + 
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKT 219

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.9 bits (161), Expect = 3e-12
 Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 20/144 (13%)

Query: 71  FSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGA 130
               + +DLS N    +L S SF  +  +++++                  LS       
Sbjct: 27  PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLD------------------LSRCEIQTI 67

Query: 131 IPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLE 190
              +  +L  L  L L  N +Q L   +   L++L+ L       A      +  L  L+
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 191 FFNVSDNYLTGPIPQGKQFATFDN 214
             NV+ N +       + F+   N
Sbjct: 128 ELNVAHNLIQS-FKLPEYFSNLTN 150

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.7 bits (158), Expect = 8e-12
 Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 26/184 (14%)

Query: 22  SKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN 81
              + L L    +         + P+L VL L       +  E       S L  + L+ 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI--EDGAYQSLSHLSTLILTG 85

Query: 82  NRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGL 141
           N    +L   +F   ++++ +                                I +LK L
Sbjct: 86  NPIQ-SLALGAFSGLSSLQKLV------------------AVETNLASLENFPIGHLKTL 126

Query: 142 QVLNLQYNNLQGL-IPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFF----NVSD 196
           + LN+ +N +Q   +P    NLTNLE LDLS+ K        L  L  +       ++S 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 197 NYLT 200
           N + 
Sbjct: 187 NPMN 190

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 7e-09
 Identities = 38/229 (16%), Positives = 77/229 (33%), Gaps = 34/229 (14%)

Query: 6   SHN-LFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEE 64
           +HN +   ++P    N + LE L L + +I   + + L  L ++ +L L  ++    +  
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 65  PRTGCGFS-KLRIIDLSNNRFSGNLPSKSF--LCWNAMKIVNARRMMTYNKIPDILAGI- 120
            + G     +L  + L NN  S N+       L    +  +          +        
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 121 ------------ILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSS-LGNLTNLES 167
                       +   + ++  I      L  +   +L    ++ +   S      +LE 
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 311

Query: 168 LDLSNKKFAGRIPQQLVELTF----------------LEFFNVSDNYLT 200
           ++    +F     + L  LTF                LEF ++S N L+
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 6   SHNLFEGRIPRSLI-NCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEE 64
           + N F+      +      L FL L   Q+    P+   +L  L VL + SN    V + 
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512

Query: 65  PRTGCGFSKLRIIDLSNNRFSGNLPSKSFL 94
                  + L+ I L  N +  + P   +L
Sbjct: 513 --IFDRLTSLQKIWLHTNPWDCSCPRIDYL 540

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 71.2 bits (175), Expect = 3e-14
 Identities = 45/224 (20%), Positives = 73/224 (32%), Gaps = 37/224 (16%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
            +N               L  L L N +IS         L KL  L +  N    +   P
Sbjct: 62  QNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI--PP 119

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSF----------LCWNAMKIVNARR--------- 106
                 S L  + + +NR    +P   F          +  N ++               
Sbjct: 120 NL---PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN 175

Query: 107 --MMTYNKIPDILAGI-------ILSNNRFVGAIPA-SIANLKGLQVLNLQYNNLQGLIP 156
              ++  K+  I   +        L +N+   AI    +     L  L L +N ++ +  
Sbjct: 176 YLRISEAKLTGIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIEN 234

Query: 157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200
            SL  L  L  L L N K + R+P  L +L  L+   +  N +T
Sbjct: 235 GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.6 bits (132), Expect = 9e-09
 Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 32/174 (18%)

Query: 6   SHN-LFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEE 64
             N L          +  KL +L +   +++   P        LN L L  N    +  E
Sbjct: 155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQAI--E 209

Query: 65  PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSN 124
                 +SKL  + L +N+    + + S      ++ ++                  L N
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELH------------------LDN 250

Query: 125 NRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSS------LGNLTNLESLDLSN 172
           N+    +PA + +LK LQV+ L  NN+  +  +                + L N
Sbjct: 251 NKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 113 IPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           I      + L NN            L+ L  L L  N +  +   +   L  L+ L +S 
Sbjct: 52  ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111

Query: 173 ---KKFAGRIPQQLVEL 186
               +    +P  LVEL
Sbjct: 112 NHLVEIPPNLPSSLVEL 128

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 34/180 (18%), Positives = 60/180 (33%), Gaps = 32/180 (17%)

Query: 24  LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR 83
              L L N  IS+        L  L  L+L +N    +    +      KL+ + +S N 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI--HEKAFSPLRKLQKLYISKNH 113

Query: 84  FSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASI-ANLKGLQ 142
               +P                           L  + + +NR    +P  + + L+ + 
Sbjct: 114 LV-EIPPNLP---------------------SSLVELRIHDNRIR-KVPKGVFSGLRNMN 150

Query: 143 VLNLQYNNLQ--GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200
            + +  N L+  G  P +   L  L  L +S  K    IP+ L     L   ++  N + 
Sbjct: 151 CIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ 206

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 71.2 bits (175), Expect = 3e-14
 Identities = 45/224 (20%), Positives = 75/224 (33%), Gaps = 36/224 (16%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
            +N           N   L  L L N +IS   P     L KL  L L  N     ++E 
Sbjct: 60  QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ----LKEL 115

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSF----------LCWNAMKIVNARR--------- 106
                   L+ + +  N  +  +    F          L  N +K               
Sbjct: 116 PEKM-PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173

Query: 107 ---MMTYNKIPDILAGI-------ILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP 156
               +    I  I  G+        L  N+      AS+  L  L  L L +N++  +  
Sbjct: 174 SYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233

Query: 157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200
            SL N  +L  L L+N K   ++P  L +  +++   + +N ++
Sbjct: 234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 35/184 (19%)

Query: 22  SKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN 81
             L+ L +   +I+    S    L ++ V+ L +N       E     G  KL  I +++
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180

Query: 82  NRFSGNLPSKSF-------LCWNAMKIVNARRM----------MTYNKIPDILAGII--- 121
              +  +P           L  N +  V+A  +          +++N I  +  G +   
Sbjct: 181 TNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239

Query: 122 -------LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGL------IPSSLGNLTNLESL 168
                  L+NN+ V  +P  +A+ K +QV+ L  NN+  +       P       +   +
Sbjct: 240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 298

Query: 169 DLSN 172
            L +
Sbjct: 299 SLFS 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 36/180 (20%), Positives = 61/180 (33%), Gaps = 31/180 (17%)

Query: 24  LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR 83
              L L N +I++        L  L+ LIL +N    +   P       KL  + LS N+
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI--SPGAFAPLVKLERLYLSKNQ 111

Query: 84  FSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASI-ANLKGLQ 142
               LP K                         L  + +  N     +  S+   L  + 
Sbjct: 112 LK-ELPEKMP---------------------KTLQELRVHENEIT-KVRKSVFNGLNQMI 148

Query: 143 VLNLQYNNLQ--GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200
           V+ L  N L+  G+   +   +  L  + +++      IPQ L     L   ++  N +T
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT 205

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 113 IPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           +P   A + L NN+          NLK L  L L  N +  + P +   L  LE L LS 
Sbjct: 50  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109

Query: 173 ---KKFAGRIPQQLVEL 186
              K+   ++P+ L EL
Sbjct: 110 NQLKELPEKMPKTLQEL 126

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.0 bits (172), Expect = 5e-14
 Identities = 35/214 (16%), Positives = 70/214 (32%), Gaps = 21/214 (9%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQIS--DTFPSWLGTLPKLNVLILRSNIFYGVIE 63
             N  +          ++L  L L +  +S              L  L L  N    +  
Sbjct: 36  ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-- 93

Query: 64  EPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGI--- 120
                 G  +L  +D  ++          FL    +  ++    +++        GI   
Sbjct: 94  -SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD----ISHTHTRVAFNGIFNG 148

Query: 121 -------ILSNNRFVGAIPASI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
                   ++ N F       I   L+ L  L+L    L+ L P++  +L++L+ L++S+
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208

Query: 173 KKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 206
             F          L  L+  + S N++     + 
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMT-SKKQ 241

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.6 bits (163), Expect = 9e-13
 Identities = 35/195 (17%), Positives = 66/195 (33%), Gaps = 27/195 (13%)

Query: 24  LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR 83
              L L + ++          L +L  L L SN         ++  G + L+ +DLS N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 84  FSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASI-ANLKGLQ 142
               + S +FL                      L  +   ++        S+  +L+ L 
Sbjct: 90  VI-TMSS-NFLGLEQ------------------LEHLDFQHSNLKQMSEFSVFLSLRNLI 129

Query: 143 VLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQ-LVELTFLEFFNVSDNYLTG 201
            L++ + + +         L++LE L ++   F          EL  L F ++S   L  
Sbjct: 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 189

Query: 202 PIPQGKQFATFDNTS 216
            +        F++ S
Sbjct: 190 -LSPT----AFNSLS 199

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.5 bits (155), Expect = 9e-12
 Identities = 38/193 (19%), Positives = 67/193 (34%), Gaps = 34/193 (17%)

Query: 13  RIPRSLINCSKLEFLGLGNYQISDTFP-SWLGTLPKLNVLILRSN----IFYGVIEEPRT 67
            +  + +   +LE L   +  +      S   +L  L  L +        F G+      
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN---- 147

Query: 68  GCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRF 127
             G S L ++ ++ N F  N     F              +        L  + LS  + 
Sbjct: 148 --GLSSLEVLKMAGNSFQENFLPDIF------------TELRN------LTFLDLSQCQL 187

Query: 128 VGAIPASI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVE- 185
              +  +   +L  LQVLN+ +NN   L       L +L+ LD S         +Q ++ 
Sbjct: 188 E-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQH 245

Query: 186 -LTFLEFFNVSDN 197
             + L F N++ N
Sbjct: 246 FPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 29/150 (19%), Positives = 58/150 (38%), Gaps = 21/150 (14%)

Query: 71  FSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI------------LA 118
            S    ++L +N+   +LP   F     +  ++    ++ N +               L 
Sbjct: 27  PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLS----LSSNGLSFKGCCSQSDFGTTSLK 81

Query: 119 GIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSL-GNLTNLESLDLSNKKFAG 177
            + LS N  V  + ++   L+ L+ L+ Q++NL+ +   S+  +L NL  LD+S+     
Sbjct: 82  YLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR- 139

Query: 178 RIPQQ-LVELTFLEFFNVSDNYLTGPIPQG 206
                    L+ LE   ++ N         
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 113 IPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNL--QGLIPSSLGNLTNLESLDL 170
           IP     + L +N+           L  L  L+L  N L  +G    S    T+L+ LDL
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 171 SNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200
           S       +    + L  LE  +   + L 
Sbjct: 86  SFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 114

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 122 LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKK--FAGRI 179
            ++     ++P  I        L L+ N LQ L       LT L  L LS+    F G  
Sbjct: 14  CNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70

Query: 180 PQQLVELTFLEFFNVSDNYLT 200
            Q     T L++ ++S N + 
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI 91

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.9 bits (171), Expect = 6e-14
 Identities = 48/218 (22%), Positives = 72/218 (33%), Gaps = 30/218 (13%)

Query: 6   SHNLFEGRIPRSLINCS--KLEFLGLGNYQISDTFPSWLGTL-----PKLNVLILRSNIF 58
            +    G  P  L+  +   L  L L N   + T  +WL  L     P L VL +     
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWA-TRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 59  YGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLC---WNAMKIVNARRMMTYNKIPD 115
                       F  L  +DLS+N   G     S LC   +  ++++  R          
Sbjct: 162 LNFS--CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSG 218

Query: 116 ILAGII----------LSNNRFVGAIPASI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTN 164
           + + +           LS+N    A  A        L  LNL +  L+ + P  L     
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGL--PAK 275

Query: 165 LESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGP 202
           L  LDLS  +   R P    EL  +   ++  N     
Sbjct: 276 LSVLDLSYNRLD-RNPSPD-ELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.3 bits (159), Expect = 2e-12
 Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 28/221 (12%)

Query: 4   KRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSW---LGTLPKLNVLILRSNIFYG 60
           KR     +      +I    L+ L +   +I          +  +  L  L L +    G
Sbjct: 50  KRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG 109

Query: 61  VIEEPRTGCGFSKLRIIDLSNNRFSGN---LPSKSFLCWNAMKIVNARRMMTYNKIPDIL 117
               P        L I++L N  ++     L          +K+++    +      +  
Sbjct: 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS----IAQAHSLNFS 165

Query: 118 AGII----------LSNNRFVGAI-------PASIANLKGLQVLNLQYNNLQGLIPSSLG 160
              +          LS+N  +G         P     L+ L + N       G+  +   
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 161 NLTNLESLDLSNKKFAGRIPQQL-VELTFLEFFNVSDNYLT 200
               L+ LDLS+               + L   N+S   L 
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.7 bits (162), Expect = 2e-12
 Identities = 46/200 (23%), Positives = 74/200 (37%), Gaps = 35/200 (17%)

Query: 18  LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
           +     +  L L   +++D  P  L  L  L  L L  N     I++  +     KL+ +
Sbjct: 61  IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK----IKDLSSLKDLKKLKSL 114

Query: 78  DLSNNRFS-----GNLPSKSFLCWNAMKIVNARRMMTYNKIPDI--------LAGIILSN 124
            L +N  S      +LP    L             +  NKI DI        L  + L +
Sbjct: 115 SLEHNGISDINGLVHLPQLESLY------------LGNNKITDITVLSRLTKLDTLSLED 162

Query: 125 NRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLV 184
           N+ +  I   +A L  LQ L L  N++  L   +L  L NL+ L+L +++   +      
Sbjct: 163 NQ-ISDIV-PLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQS 218

Query: 185 ELTFLEFFNVSDNYLTGPIP 204
            L        +D  L  P  
Sbjct: 219 NLVVPNTVKNTDGSLVTPEI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.2 bits (140), Expect = 9e-10
 Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 37/181 (20%)

Query: 33  QISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFS-----GN 87
            I   FP       +     L+       + +  T    + +  I  +N+          
Sbjct: 10  PIKQIFP--DDAFAETIKDNLKKKS----VTDAVTQNELNSIDQIIANNSDIKSVQGIQY 63

Query: 88  LPSKSFLCWNAMKIVNARRMMTYNKIPDI--------LAGIILSNNRFVGAIPASIANLK 139
           LP+ + L             +  NK+ DI        L  + L  N+ +  +  S+ +LK
Sbjct: 64  LPNVTKLF------------LNGNKLTDIKPLTNLKNLGWLFLDENK-IKDLS-SLKDLK 109

Query: 140 GLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYL 199
            L+ L+L++N +  +  + L +L  LESL L N K        L  LT L+  ++ DN +
Sbjct: 110 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI 165

Query: 200 T 200
           +
Sbjct: 166 S 166

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.8 bits (139), Expect = 1e-09
 Identities = 33/192 (17%), Positives = 62/192 (32%), Gaps = 49/192 (25%)

Query: 17  SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRI 76
           +    + ++ +   N  I       +  LP +  L L  N     + + +       L  
Sbjct: 38  TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN----KLTDIKPLTNLKNLGW 91

Query: 77  IDLSNNRFS-----GNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAI 131
           + L  N+        +L     L             + +N I DI               
Sbjct: 92  LFLDENKIKDLSSLKDLKKLKSLS------------LEHNGISDI--------------- 124

Query: 132 PASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN---KKFAGRIPQQLVELTF 188
              + +L  L+ L L  N +  +  + L  LT L++L L +             L  LT 
Sbjct: 125 -NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-----LAGLTK 176

Query: 189 LEFFNVSDNYLT 200
           L+   +S N+++
Sbjct: 177 LQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.7 bits (136), Expect = 3e-09
 Identities = 39/184 (21%), Positives = 70/184 (38%), Gaps = 31/184 (16%)

Query: 17  SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRI 76
           SL +  KL+ L L +  ISD   + L  LP+L  L L +N     I +       +KL  
Sbjct: 104 SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNN----KITDITVLSRLTKLDT 157

Query: 77  IDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIA 136
           + L +N+ S ++   + L    ++ +     ++ N I D+                 ++A
Sbjct: 158 LSLEDNQIS-DIVPLAGL--TKLQNLY----LSKNHISDL----------------RALA 194

Query: 137 NLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSD 196
            LK L VL L          +   NL    ++  ++       P+ + +    E  NV  
Sbjct: 195 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKW 252

Query: 197 NYLT 200
           +   
Sbjct: 253 HLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.6 bits (102), Expect = 5e-05
 Identities = 11/84 (13%), Positives = 27/84 (32%), Gaps = 6/84 (7%)

Query: 117 LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFA 176
           +   I  +       P            NL+  ++   +      L +++ +  +N    
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 177 GRIPQQLVELTFLEFFNVSDNYLT 200
             + Q +  L  +    ++ N LT
Sbjct: 57  -SV-QGIQYLPNVTKLFLNGNKLT 78

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.8 bits (158), Expect = 5e-12
 Identities = 45/214 (21%), Positives = 74/214 (34%), Gaps = 24/214 (11%)

Query: 22  SKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN 81
             ++ L L N +I+    S L     L  L+L SN    +  E  +      L  +DLS 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI--EEDSFSSLGSLEHLDLSY 109

Query: 82  NRFSGNLPSKSF----------LCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAI 131
           N  S NL S  F          L  N            ++ +   L  + + N      I
Sbjct: 110 NYLS-NLSSSWFKPLSSLTFLNLLGN--PYKTLGETSLFSHLTK-LQILRVGNMDTFTKI 165

Query: 132 PASI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVE-LTFL 189
                A L  L+ L +  ++LQ   P SL ++ N+  L L  K+    + +  V+  + +
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSV 224

Query: 190 EFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL 223
           E   + D  L         F+       +     
Sbjct: 225 ECLELRDTDLDTF-----HFSELSTGETNSLIKK 253

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.9 bits (148), Expect = 9e-11
 Identities = 21/162 (12%), Positives = 48/162 (29%), Gaps = 22/162 (13%)

Query: 15  PRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKL 74
            +     + LE L +    +    P  L ++  ++ LIL       +          S +
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL--LEIFVDVTSSV 224

Query: 75  RIIDLSNNRFSGN----LPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGA 130
             ++L +          L +            N+               + +++      
Sbjct: 225 ECLELRDTDLDTFHFSELSTGET---------NSLIKKFT------FRNVKITDESLF-Q 268

Query: 131 IPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           +   +  + GL  L    N L+ +       LT+L+ + L  
Sbjct: 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 32/190 (16%), Positives = 62/190 (32%), Gaps = 17/190 (8%)

Query: 15  PRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSN----IFYGVIEEPRTGCG 70
              L  C  L+ L L +  I+        +L  L  L L  N    +     +       
Sbjct: 69  NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK------P 122

Query: 71  FSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPD-ILAG------IILS 123
            S L  ++L  N +     +  F     ++I+    M T+ KI     AG      + + 
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182

Query: 124 NNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQL 183
            +      P S+ +++ +  L L       L+   +   +++E L+L +         +L
Sbjct: 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242

Query: 184 VELTFLEFFN 193
                     
Sbjct: 243 STGETNSLIK 252

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 35/212 (16%), Positives = 72/212 (33%), Gaps = 31/212 (14%)

Query: 22  SKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN 81
             LE L L    +S+   SW   L  L  L L  N +   + E       +KL+I+ + N
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGN 158

Query: 82  NRFSGNLPSKSFLCWNAMKIVNARRM-MTYNKIPDILAG----------IILSNNRFVGA 130
                 +  K F       +     + +  + +                +IL   + +  
Sbjct: 159 MDTFTKIQRKDFA-----GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213

Query: 131 IPASIANLKGLQVLNLQYNNLQG--------LIPSSLGNLTNLESLDLSNKKFAGRIPQQ 182
           +   +     ++ L L+  +L             +SL       ++ ++++    ++ + 
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKL 272

Query: 183 LVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 214
           L +++ L     S N L   +P G     FD 
Sbjct: 273 LNQISGLLELEFSRNQLKS-VPDG----IFDR 299

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 3/99 (3%)

Query: 113 IPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           + + +  + LSNNR      + +     LQ L L  N +  +   S  +L +LE LDLS 
Sbjct: 50  LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 173 KKFAGRIPQQL-VELTFLEFFNVSDNYLTGPIPQGKQFA 210
              +  +       L+ L F N+  N     + +   F+
Sbjct: 110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFS 146

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.6 bits (157), Expect = 7e-12
 Identities = 35/215 (16%), Positives = 78/215 (36%), Gaps = 37/215 (17%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           + N     +P      + LE+L   + ++S T P    +L  L+   + +N    + E P
Sbjct: 88  TQNALI-SLPELP---ASLEYLDACDNRLS-TLPELPASLKHLD---VDNNQLTMLPELP 139

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRM-MTYNKI---PDILAG-- 119
                 + L  I+  NN+ +  LP             +   + +  N++   P++     
Sbjct: 140 ------ALLEYINADNNQLT-MLPEL---------PTSLEVLSVRNNQLTFLPELPESLE 183

Query: 120 -IILSNNRFVGAIPASIANLKGLQ----VLNLQYNNLQGLIPSSLGNLTNLESLDLSNKK 174
            + +S N    ++PA        +        + N +  + P ++ +L    ++ L +  
Sbjct: 184 ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNP 241

Query: 175 FAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQF 209
            + RI + L + T    ++    Y +    Q    
Sbjct: 242 LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.5 bits (149), Expect = 7e-11
 Identities = 34/203 (16%), Positives = 57/203 (28%), Gaps = 33/203 (16%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
            +N     +P      + LE++   N Q++   P        L VL +R+N    + E P
Sbjct: 128 DNNQLT-MLPELP---ALLEYINADNNQLT-MLPELPT---SLEVLSVRNNQLTFLPELP 179

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN 125
                   L  +D+S N    +LP+      +                 +         N
Sbjct: 180 ------ESLEALDVSTNLLE-SLPAVPVRNHH---------------SEETEIFFRCREN 217

Query: 126 RFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVE 185
           R    IP +I +L     + L+ N L   I  SL   T           F   +      
Sbjct: 218 RIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF--SMSDGQQN 274

Query: 186 LTFLEFFNVSDNYLTGPIPQGKQ 208
                  +    +          
Sbjct: 275 TLHRPLADAVTAWFPENKQSDVS 297

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.4 bits (141), Expect = 8e-10
 Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 35/168 (20%)

Query: 33  QISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKS 92
            IS T+  +     K     L        +   +  C  ++   + L+    S +LP   
Sbjct: 21  TISGTYADYFSAWDKWEKQALPGENRNEAVSLLK-ECLINQFSELQLNRLNLS-SLPD-- 76

Query: 93  FLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQ 152
                               +P  +  + ++ N  + ++P   A+   L+ L+   N L 
Sbjct: 77  -------------------NLPPQITVLEITQNALI-SLPELPAS---LEYLDACDNRLS 113

Query: 153 GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200
            L P    +L +   LD+ N +    +P+    L ++   N  +N LT
Sbjct: 114 TL-PELPASLKH---LDVDNNQLT-MLPELPALLEYI---NADNNQLT 153

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.0 bits (119), Expect = 4e-07
 Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 22/105 (20%)

Query: 109 TYNKIPDILAGII-------------LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLI 155
            YN I    A                 + N  V  +   +  +     L L   NL  L 
Sbjct: 18  FYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSL- 74

Query: 156 PSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200
           P +L     +  L+++       +P+    L +L   +  DN L+
Sbjct: 75  PDNLP--PQITVLEITQNAL-ISLPELPASLEYL---DACDNRLS 113

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 62.2 bits (151), Expect = 5e-11
 Identities = 22/140 (15%), Positives = 45/140 (32%), Gaps = 30/140 (21%)

Query: 69  CGFSKLRIIDLSNNRFSGNLPSKSF-----LCWNAMKIVNARRMMTYNKIPDILAGI--- 120
           C  +   ++++  +  +  LP         L      +           +P +   +   
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNL---------TSLPALPPELRTL 86

Query: 121 ILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIP 180
            +S N+   ++P     L  L + +    +L  L        + L  L +   +    +P
Sbjct: 87  EVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLT-SLP 137

Query: 181 QQLVELTFLEFFNVSDNYLT 200
                L  L   +VSDN L 
Sbjct: 138 VLPPGLQEL---SVSDNQLA 154

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.4 bits (141), Expect = 9e-10
 Identities = 38/219 (17%), Positives = 71/219 (32%), Gaps = 62/219 (28%)

Query: 21  CSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80
            +    L +G   ++ T P  L     +  L++  N    +           +LR +++S
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLTSLPAL------PPELRTLEVS 89

Query: 81  NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGII---LSNNRF---------- 127
            N+ + +LP         + I +         +P + +G+    +  N+           
Sbjct: 90  GNQLT-SLP-VLPPGLLELSIFSNP----LTHLPALPSGLCKLWIFGNQLTSLPVLPPGL 143

Query: 128 ---------VGAIPASIANLK-----------------GLQVLNLQYNNLQGLIPSSLGN 161
                    + ++PA  + L                  GLQ L++  N L  L P+    
Sbjct: 144 QELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASL-PTLPSE 202

Query: 162 LTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200
           L  L + +         +P     L  L    VS N LT
Sbjct: 203 LYKLWAYNNRLTS----LPALPSGLKEL---IVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 32/206 (15%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
            +N     +P      S L+ L + + Q++ + P+    L KL      +N    +   P
Sbjct: 169 YNNQLT-SLPMLP---SGLQELSVSDNQLA-SLPTLPSELYKLWAY---NNRLTSLPALP 220

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKI---PDILAGII- 121
                 S L+ + +S NR + +LP       + +K +        N++   P + +G++ 
Sbjct: 221 ------SGLKELIVSGNRLT-SLPVL----PSELKELMVSG----NRLTSLPMLPSGLLS 265

Query: 122 --LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRI 179
             +  N+    +P S+ +L     +NL+ N L      +L  +T+         +F    
Sbjct: 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAG 324

Query: 180 PQQLVELTFLEFFNVSDNYLTGPIPQ 205
                E   L     + ++L      
Sbjct: 325 ASAPRETRALH--LAAADWLVPAREG 348

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 18/83 (21%)

Query: 135 IANLKGLQVLNLQYNNLQGL---IPSSL--------------GNLTNLESLDLSNKKFAG 177
                G  VLN+  + L  L   +P+ +                   L +L++S  +   
Sbjct: 36  ACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT- 94

Query: 178 RIPQQLVELTFLEFFNVSDNYLT 200
            +P     L  L  F+    +L 
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLP 117

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 43/201 (21%), Positives = 69/201 (34%), Gaps = 37/201 (18%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
            +N  + ++P        LEF+  GN Q+    P  L  LP L  +   +N    + + P
Sbjct: 161 DNNSLK-KLPDLP---PSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLKKLPDLP 214

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI------LAG 119
                   L  I   NN     LP    L    +  +        N +  +      L  
Sbjct: 215 ------LSLESIVAGNNILE-ELPELQNL--PFLTTIY----ADNNLLKTLPDLPPSLEA 261

Query: 120 IILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRI 179
           + + +N     +P    +L  L V    ++ L  L P       NL  L+ S+ +    +
Sbjct: 262 LNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR-SL 312

Query: 180 PQQLVELTFLEFFNVSDNYLT 200
                 L  L   NVS+N L 
Sbjct: 313 CDLPPSLEEL---NVSNNKLI 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 37/195 (18%), Positives = 69/195 (35%), Gaps = 18/195 (9%)

Query: 13  RIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFS 72
            +P    N            +     P   G   ++ V  LR  +     E      G S
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 73  -------KLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN 125
                   L  +  S N  +  LP       + +   N  + ++   +P +L  + +SNN
Sbjct: 85  SLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS--DLPPLLEYLGVSNN 141

Query: 126 RFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVE 185
           +    +P  + N   L+++++  N+L+ L         +LE +   N +    +P +L  
Sbjct: 142 QLE-KLP-ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLE-ELP-ELQN 193

Query: 186 LTFLEFFNVSDNYLT 200
           L FL      +N L 
Sbjct: 194 LPFLTAIYADNNSLK 208

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 24/170 (14%), Positives = 48/170 (28%), Gaps = 28/170 (16%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S N     +         LE L + N ++    P+      +L  LI   N    V E P
Sbjct: 305 SSNEIR-SLCDLP---PSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLAEVPELP 356

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGII---L 122
                   L+ + +  N      P           + + R      ++P++   +    +
Sbjct: 357 ------QNLKQLHVEYNPLR-EFPDIPE------SVEDLRMNSHLAEVPELPQNLKQLHV 403

Query: 123 SNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
             N      P    ++   + L +    +      +      LE     +
Sbjct: 404 ETNPLR-EFPDIPESV---EDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 17/102 (16%), Positives = 26/102 (25%), Gaps = 18/102 (17%)

Query: 117 LAGIILSNNRFVGAIPASIANL-------------KGLQVLNLQYNNLQGLIPSSLGNLT 163
                 + + +    P                   +    L L    L  L P    +L 
Sbjct: 36  KTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PELPPHL- 93

Query: 164 NLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 205
             ESL  S       +P+    L  L   N +   L+   P 
Sbjct: 94  --ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL 132

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 1/71 (1%)

Query: 131 IPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLE 190
           I     +   LQ      +NL  + P    N+ +      +  ++    P    E   + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 191 FFNVSDNYLTG 201
              + D     
Sbjct: 62  VSRLRDCLDRQ 72

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 25/182 (13%), Positives = 54/182 (29%), Gaps = 28/182 (15%)

Query: 20  NCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL 79
             + L ++ L N  ++D     +     +  L + +              G S L  + +
Sbjct: 42  QMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH----ATNYNPISGLSNLERLRI 95

Query: 80  SNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLK 139
                + +         N   + +             L  + +S++    +I   I  L 
Sbjct: 96  MGKDVTSDKIP------NLSGLTS-------------LTLLDISHSAHDDSILTKINTLP 136

Query: 140 GLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYL 199
            +  ++L YN     I   L  L  L+SL++            + +   L         +
Sbjct: 137 KVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193

Query: 200 TG 201
            G
Sbjct: 194 GG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 25/155 (16%), Positives = 42/155 (27%), Gaps = 48/155 (30%)

Query: 18  LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
           +   S LE L +    ++      L  L  L +L +  +     I          K+  I
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL--PKVNSI 141

Query: 78  DLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIAN 137
           DLS N                              I DI                  +  
Sbjct: 142 DLSYN----------------------------GAITDI----------------MPLKT 157

Query: 138 LKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           L  L+ LN+Q++ +       + +   L  L   +
Sbjct: 158 LPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 135 IANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNV 194
           I     ++ L +   +      + +  L+NLE L +  K         L  LT L   ++
Sbjct: 62  IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 195 SDNYLTGPIPQG 206
           S +     I   
Sbjct: 120 SHSAHDDSILTK 131

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 3/80 (3%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
                      +L   + L  L + +    D+  + + TLPK+N + L  N   G I + 
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN---GAITDI 152

Query: 66  RTGCGFSKLRIIDLSNNRFS 85
                  +L+ +++  +   
Sbjct: 153 MPLKTLPELKSLNIQFDGVH 172

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 33/191 (17%), Positives = 59/191 (30%), Gaps = 30/191 (15%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLI------------- 52
           +          +    + +  L L      ++             +              
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255

Query: 53  LRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNK 112
                F         G   S ++  DLS ++    L    F  +  ++ +     +  N+
Sbjct: 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLT----LAQNE 310

Query: 113 IPDILAGI----------ILSNNRFVGAIPASI-ANLKGLQVLNLQYNNLQGLIPSSLGN 161
           I  I               LS N   G+I + +  NL  L+VL+L YN+++ L   S   
Sbjct: 311 INKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369

Query: 162 LTNLESLDLSN 172
           L NL+ L L  
Sbjct: 370 LPNLKELALDT 380

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 38/224 (16%), Positives = 75/224 (33%), Gaps = 39/224 (17%)

Query: 22  SKLEFLGLGNYQISDTFPSWLGTLPKLNVLILR------SNIFYGVIEEPRTGC--GFSK 73
            +   L L   ++       L      +  +LR       ++    +   + G     + 
Sbjct: 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213

Query: 74  LRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGII--LSNNRFVG-- 129
           +  +DLS N F  ++  + F      KI +     +YN              N  F G  
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273

Query: 130 ---------------AIPASI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN- 172
                          A+  S+ ++   L+ L L  N +  +  ++   LT+L  L+LS  
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333

Query: 173 --KKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 214
                  R+ + L +L  L   ++S N++   +       +F  
Sbjct: 334 FLGSIDSRMFENLDKLEVL---DLSYNHIRA-LGDQ----SFLG 369

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 23/152 (15%)

Query: 24  LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR 83
           + ++ L    I++   +    L  L  L +       VI    T  G S L I+ L  N+
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI-RNNTFRGLSSLIILKLDYNQ 90

Query: 84  FSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGA-IPASI-ANLKGL 141
           F   L + +F       + N             L  + L+     GA +  +    L  L
Sbjct: 91  FL-QLETGAF-----NGLAN-------------LEVLTLTQCNLDGAVLSGNFFKPLTSL 131

Query: 142 QVLNLQYNNLQGLIPSSL-GNLTNLESLDLSN 172
           ++L L+ NN++ + P+S   N+     LDL+ 
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 25/126 (19%)

Query: 74  LRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPA 133
           +  +DLS N  +  L   SF     ++ +                   +        I  
Sbjct: 32  VNYVDLSLNSIA-ELNETSFSRLQDLQFLK------------------VEQQTPGLVIRN 72

Query: 134 SI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLS-NKKFAGRIP----QQLVELT 187
           +    L  L +L L YN    L   +   L NLE L L+        +     + L  L 
Sbjct: 73  NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132

Query: 188 FLEFFN 193
            L   +
Sbjct: 133 MLVLRD 138

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.0 bits (117), Expect = 9e-07
 Identities = 27/164 (16%), Positives = 55/164 (33%), Gaps = 19/164 (11%)

Query: 20  NCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL 79
           + +     G  N++  D F         +    L  +  + +         F+ L  + L
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL--LKSVFSHFTDLEQLTL 306

Query: 80  SNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGI----------ILSNNRFVG 129
           + N  +  +   +F     +  +N    ++ N +  I + +           LS N    
Sbjct: 307 AQNEIN-KIDDNAFWGLTHLLKLN----LSQNFLGSIDSRMFENLDKLEVLDLSYNHI-R 360

Query: 130 AIPASI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           A+       L  L+ L L  N L+ +       LT+L+ + L  
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 33/205 (16%), Positives = 62/205 (30%), Gaps = 33/205 (16%)

Query: 15  PRSLINCSKLEFLGLGNYQISDTFPSWL-GTLPKLNVLILRSNIFYGVIEEPRTGCGFSK 73
             S      L+FL +          +     L  L +L L  N F  +  E     G + 
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL--ETGAFNGLAN 104

Query: 74  LRIIDLSNNRF-SGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIP 132
           L ++ L+        L    F       + +             L  ++L +N      P
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFF-----KPLTS-------------LEMLVLRDNNIKKIQP 146

Query: 133 ASI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLE----------SLDLSNKKFAGRIPQ 181
           AS   N++   VL+L +N ++ +    L N                 D++          
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206

Query: 182 QLVELTFLEFFNVSDNYLTGPIPQG 206
              + T +   ++S N     + + 
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKR 231

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 36/209 (17%), Positives = 67/209 (32%), Gaps = 43/209 (20%)

Query: 18  LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
           L N +K+  L L    + +     +  L  +  L L S      I +     G S L+++
Sbjct: 81  LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQ----ITDVTPLAGLSNLQVL 134

Query: 78  DLSNNRFS-----GNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIP 132
            L  N+ +       L +  +L             +   ++ D+                
Sbjct: 135 YLDLNQITNISPLAGLTNLQYL------------SIGNAQVSDL---------------- 166

Query: 133 ASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFF 192
             +ANL  L  L    N +  +  S L +L NL  + L N + +   P  L   + L   
Sbjct: 167 TPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222

Query: 193 NVSDNYLTGPIPQGKQFATFDNTSFDGNS 221
            +++  +T             N     + 
Sbjct: 223 TLTNQTITNQPVFYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 27/175 (15%), Positives = 56/175 (32%), Gaps = 43/175 (24%)

Query: 31  NYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFS----- 85
              I+  FP     L     +    +     + +  T      +  +       +     
Sbjct: 6   PTAINVIFP--DPALANAIKIAAGKS----NVTDTVTQADLDGITTLSAFGTGVTTIEGV 59

Query: 86  GNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLN 145
             L +   L             +  N+I D+                A + NL  +  L 
Sbjct: 60  QYLNNLIGLE------------LKDNQITDL----------------APLKNLTKITELE 91

Query: 146 LQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200
           L  N L+ +  S++  L ++++LDL++ +        L  L+ L+   +  N +T
Sbjct: 92  LSGNPLKNV--SAIAGLQSIKTLDLTSTQI--TDVTPLAGLSNLQVLYLDLNQIT 142

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.5 bits (144), Expect = 4e-10
 Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 13/160 (8%)

Query: 21  CSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80
            S   FL       +D+      TL +L  LIL+ N      +        S L  +D+S
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411

Query: 81  NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI--------LAGIILSNNRFVGAIP 132
            N  + +   ++     ++ ++N    ++ N +           +  + L NNR   +IP
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLN----LSSNMLTGSVFRCLPPKVKVLDLHNNRI-MSIP 466

Query: 133 ASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
             + +L+ LQ LN+  N L+ +       LT+L+ + L +
Sbjct: 467 KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 113 IPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           +P     + LS N         I+ L  L+VL L +N ++ L         +LE LD+S+
Sbjct: 50  LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109

Query: 173 KKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQF 209
            +        +  L  L   ++S N     +P  K+F
Sbjct: 110 NRLQNISCCPMASLRHL---DLSFNDFDV-LPVCKEF 142

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.4 bits (110), Expect = 6e-06
 Identities = 31/208 (14%), Positives = 71/208 (34%), Gaps = 28/208 (13%)

Query: 17  SLINCSKLEFLGLGNYQIS-----DTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGF 71
                  +E+L + N  I+     + F      L  L +  +++ +F     +      F
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL--FSKEALYSVF 328

Query: 72  SKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGII---------- 121
           +++ I  LS +  +  +        ++   +N     T N   D +              
Sbjct: 329 AEMNIKMLSISD-TPFIHMVCPPSPSSFTFLN----FTQNVFTDSVFQGCSTLKRLQTLI 383

Query: 122 LSNNRF--VGAIPASIANLKGLQVLNLQYNNLQGLIPSSL-GNLTNLESLDLSNKKFAGR 178
           L  N       +     N+  L+ L++  N+L             ++  L+LS+    G 
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443

Query: 179 IPQQLVELTFLEFFNVSDNYLTGPIPQG 206
           + + L     ++  ++ +N +   IP+ 
Sbjct: 444 VFRCLPPK--VKVLDLHNNRIMS-IPKD 468

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 19/115 (16%)

Query: 72  SKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGI----------I 121
            + + + LS N  S  L        + ++++     +++N+I  +   +           
Sbjct: 52  PRTKALSLSQNSIS-ELRMPDISFLSELRVLR----LSHNRIRSLDFHVFLFNQDLEYLD 106

Query: 122 LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGL-IPSSLGNLTNLESLDLSNKKF 175
           +S+NR    I      +  L+ L+L +N+   L +    GNLT L  L LS  KF
Sbjct: 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 24/198 (12%), Positives = 55/198 (27%), Gaps = 15/198 (7%)

Query: 18  LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGF--SKLR 75
           + N + L  +   N   S      +  L  L +  ++ N                   L 
Sbjct: 193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252

Query: 76  IIDLSNNRFSGNLPSKSFLCWNAMKIVNAR-RMMTYNKIPDILAGII------------L 122
            + L +   +     K F  +    +       +T  +  D                  +
Sbjct: 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312

Query: 123 SNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQ 182
            N  F+ +  A  +    + +  L  ++   +      + ++   L+ +   F   + Q 
Sbjct: 313 KNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG 372

Query: 183 LVELTFLEFFNVSDNYLT 200
              L  L+   +  N L 
Sbjct: 373 CSTLKRLQTLILQRNGLK 390

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 45/198 (22%), Positives = 74/198 (37%), Gaps = 35/198 (17%)

Query: 18  LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
           +     +  L L   +++D  P  L  L  L  L L  N     +++  +     KL+ +
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK----VKDLSSLKDLKKLKSL 117

Query: 78  DLSNNRFS-----GNLPSKSFLCWNAMKIVNARRMMTYNKIPDI--------LAGIILSN 124
            L +N  S      +LP    L             +  NKI DI        L  + L +
Sbjct: 118 SLEHNGISDINGLVHLPQLESLY------------LGNNKITDITVLSRLTKLDTLSLED 165

Query: 125 NRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLV 184
           N+ +  I   +A L  LQ L L  N++  L   +L  L NL+ L+L +++   +      
Sbjct: 166 NQ-ISDIV-PLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQS 221

Query: 185 ELTFLEFFNVSDNYLTGP 202
            L        +D  L  P
Sbjct: 222 NLVVPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 37/175 (21%), Positives = 70/175 (40%), Gaps = 27/175 (15%)

Query: 34  ISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSF 93
           I   F        +     L+       + +  T    + +  I  +N+    ++    +
Sbjct: 14  IKQIFS--DDAFAETIKDNLKKKS----VTDAVTQNELNSIDQIIANNSDIK-SVQGIQY 66

Query: 94  LCWNAMKIVNARRMMTYNKIPDI--------LAGIILSNNRFVGAIPASIANLKGLQVLN 145
           L    +  +     +  NK+ DI        L  + L  N+ V  +  S+ +LK L+ L+
Sbjct: 67  L--PNVTKLF----LNGNKLTDIKPLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLS 118

Query: 146 LQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200
           L++N +  +  + L +L  LESL L N K        L  LT L+  ++ DN ++
Sbjct: 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 43/189 (22%)

Query: 17  SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRI 76
           +    + ++ +   N  I       +  LP +  L L  N     + + +       L  
Sbjct: 41  TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK----LTDIKPLANLKNLGW 94

Query: 77  IDLSNNRFS-----GNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAI 131
           + L  N+        +L     L             + +N I DI               
Sbjct: 95  LFLDENKVKDLSSLKDLKKLKSLS------------LEHNGISDI--------------- 127

Query: 132 PASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEF 191
              + +L  L+ L L  N +  +  + L  LT L++L L + +        L  LT L+ 
Sbjct: 128 -NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 182

Query: 192 FNVSDNYLT 200
             +S N+++
Sbjct: 183 LYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 39/184 (21%), Positives = 69/184 (37%), Gaps = 31/184 (16%)

Query: 17  SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRI 76
           SL +  KL+ L L +  ISD     L  LP+L  L L +N     I +       +KL  
Sbjct: 107 SLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNN----KITDITVLSRLTKLDT 160

Query: 77  IDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIA 136
           + L +N+ S ++   + L    ++ +     ++ N I D+                 ++A
Sbjct: 161 LSLEDNQIS-DIVPLAGL--TKLQNLY----LSKNHISDL----------------RALA 197

Query: 137 NLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSD 196
            LK L VL L          +   NL    ++  ++       P+ + +    E  NV  
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKW 255

Query: 197 NYLT 200
           +   
Sbjct: 256 HLPE 259

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 17/153 (11%)

Query: 20  NCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL 79
             S L+ L      ++      +G L  L  L +  N+     + P      + L  +DL
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-QSFKLPEYFSNLTNLEHLDL 156

Query: 80  SNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLK 139
           S+N+   ++        + M ++N    ++ N +  I  G       F          ++
Sbjct: 157 SSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA------F--------KEIR 201

Query: 140 GLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
            L+ L L  N L+ +       LT+L+ + L  
Sbjct: 202 -LKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 23/153 (15%)

Query: 74  LRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGI----------ILS 123
            + +DLS N    +L S SF  +  +++++    ++  +I  I  G           IL+
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLD----LSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 124 NNRFVGAIPASI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLS-NKKFAGRIPQ 181
            N  + ++     + L  LQ L     NL  L    +G+L  L+ L+++ N   + ++P+
Sbjct: 85  GNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 182 QLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 214
               LT LE  ++S N +   I           
Sbjct: 144 YFSNLTNLEHLDLSSNKIQS-IYCT----DLRV 171

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 38/206 (18%), Positives = 68/206 (33%), Gaps = 28/206 (13%)

Query: 24  LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR 83
            + L L    +         + P+L VL L       +  E       S L  + L+ N 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI--EDGAYQSLSHLSTLILTGNP 87

Query: 84  FSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGII----------LSNNRFVGAIPA 133
              +L   +F   ++++ +          +  +    I          +++N        
Sbjct: 88  IQ-SLALGAFSGLSSLQKLV----AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 134 SI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLE----SLDLSNKKFAGRIPQQLVELTF 188
              +NL  L+ L+L  N +Q +  + L  L  +     SLDLS       I     +   
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR 201

Query: 189 LEFFNVSDNYLTGPIPQGKQFATFDN 214
           L+   +  N L   +P G     FD 
Sbjct: 202 LKELALDTNQLKS-VPDG----IFDR 222

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 15/91 (16%)

Query: 130 AIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIP----QQLVE 185
            IP ++      + L+L +N L+ L   S  +   L+ LDLS  +    I     Q L  
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 186 LTFLEFFNVSDNYLTGPIPQGKQFATFDNTS 216
           L+ L    ++ N +   +  G     F   S
Sbjct: 78  LSTL---ILTGNPIQS-LALG----AFSGLS 100

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.7 bits (136), Expect = 4e-09
 Identities = 25/173 (14%), Positives = 52/173 (30%), Gaps = 11/173 (6%)

Query: 31  NYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPS 90
           + + S    S L +  +L  L   +      I                L        +  
Sbjct: 357 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 416

Query: 91  KSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNN 150
                 + ++                +  + L++      +   +  L  +  L+L +N 
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNR 474

Query: 151 LQGLIPSSLGNLTNLESLDLSN---KKFAGRIPQQLVELTFLEFFNVSDNYLT 200
           L+  +P +L  L  LE L  S+   +   G     +  L  L+   + +N L 
Sbjct: 475 LRA-LPPALAALRCLEVLQASDNALENVDG-----VANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 19/141 (13%)

Query: 42  LGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKI 101
           L  +  +    L       ++E       ++ +R++ L++   +  L     L    +  
Sbjct: 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCHLEQLLL--VTH 467

Query: 102 VNARRMMTYNKIPDILAGII---------LSNNRFVGAIPASIANLKGLQVLNLQYNNLQ 152
           ++    +++N++  +   +           S+N     +   +ANL  LQ L L  N LQ
Sbjct: 468 LD----LSHNRLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQ 521

Query: 153 GL-IPSSLGNLTNLESLDLSN 172
                  L +   L  L+L  
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQG 542

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 29/174 (16%), Positives = 52/174 (29%), Gaps = 38/174 (21%)

Query: 4   KRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIE 63
               + F        +  + +  L L +  ++      L  L  +  L L  N    +  
Sbjct: 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHN---RLRA 477

Query: 64  EPRTGCGFSKLRIIDLSNNRFS-----GNLPSKSFLCWNAMKIVNARRMMTYNKIPDILA 118
            P        L ++  S+N         NLP    L            ++  N++    A
Sbjct: 478 LPPALAALRCLEVLQASDNALENVDGVANLPRLQEL------------LLCNNRLQQSAA 525

Query: 119 GIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQ---GLIPSSLGNLTNLESLD 169
              L +                L +LNLQ N+L    G+       L ++ S+ 
Sbjct: 526 IQPLVS-------------CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 34/184 (18%)

Query: 17  SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRI 76
           S    S ++     N  I       +     L  L L  N     I +       +KL  
Sbjct: 36  SQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQ----ISDLSPLKDLTKLEE 89

Query: 77  IDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIA 136
           + ++ NR   NL      C + + + N       N++ D                  S+ 
Sbjct: 90  LSVNRNRLK-NLNGIPSACLSRLFLDN-------NELRDT----------------DSLI 125

Query: 137 NLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSD 196
           +LK L++L+++ N L+ +    LG L+ LE LDL   +        L  L  + + +++ 
Sbjct: 126 HLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTG 181

Query: 197 NYLT 200
               
Sbjct: 182 QKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 39/191 (20%), Positives = 61/191 (31%), Gaps = 42/191 (21%)

Query: 18  LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
           +   + L+ L L + QISD  P  L  L KL  L +  N     ++    G   + L  +
Sbjct: 59  MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR----LKNL-NGIPSACLSRL 111

Query: 78  DLSNNRFS-----GNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIP 132
            L NN         +L +   L             +  NK+  I                
Sbjct: 112 FLDNNELRDTDSLIHLKNLEILS------------IRNNKLKSI---------------- 143

Query: 133 ASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFF 192
             +  L  L+VL+L  N +       L  L  +  +DL+ +K      +   EL      
Sbjct: 144 VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

Query: 193 NVSDNYLTGPI 203
              D     P 
Sbjct: 202 KDPDGRWISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 34/168 (20%)

Query: 33  QISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKS 92
            I+  FP     L       L        + +  +    S ++  +  N+    +L    
Sbjct: 8   PINQVFP--DPGLANAVKQNLGKQ----SVTDLVSQKELSGVQNFNGDNSNIQ-SLAGMQ 60

Query: 93  FLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQ 152
           F     +K ++    +++N+I D+                + + +L  L+ L++  N L+
Sbjct: 61  FF--TNLKELH----LSHNQISDL----------------SPLKDLTKLEELSVNRNRLK 98

Query: 153 GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200
            L  + + +   L  L L N +        L+ L  LE  ++ +N L 
Sbjct: 99  NL--NGIPSA-CLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK 141

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 36/186 (19%), Positives = 62/186 (33%), Gaps = 25/186 (13%)

Query: 24  LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR 83
              L L    +     + L    +L  L L        + + +       L  +DLS+N+
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRA----ELTKLQVDGTLPVLGTLDLSHNQ 88

Query: 84  FSGNLPSKSFLCWNAMKIVNARRM-MTYNKIPDILAGI----------ILSNNRFVGAIP 132
              +LP           +     + +++N++  +  G            L  N     +P
Sbjct: 89  LQ-SLPL-LG-----QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLP 140

Query: 133 ASI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEF 191
             +      L+ L+L  NNL  L    L  L NL++L L        IP+       L F
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199

Query: 192 FNVSDN 197
             +  N
Sbjct: 200 AFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 27/156 (17%)

Query: 71  FSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI--------LAGIIL 122
                I+ LS N         + + +  +  +N    +   ++  +        L  + L
Sbjct: 30  PKDTTILHLSENLLY-TFSLATLMPYTRLTQLN----LDRAELTKLQVDGTLPVLGTLDL 84

Query: 123 SNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIP-- 180
           S+N+   ++P     L  L VL++ +N L  L   +L  L  L+ L L   +    +P  
Sbjct: 85  SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPG 142

Query: 181 --QQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 214
                 +L  L   ++++N LT  +P G      + 
Sbjct: 143 LLTPTPKLEKL---SLANNNLTE-LPAG----LLNG 170

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.0 bits (135), Expect = 4e-09
 Identities = 34/207 (16%), Positives = 65/207 (31%), Gaps = 25/207 (12%)

Query: 6   SHNLFEGRIPRS-LINCSKLEFLGLGNY-QISDTFPSWLGTLPKLNVLILRSNIFYGVIE 63
           S N     I      N  KL  + +     +    P     LP L  L++ +     +  
Sbjct: 62  SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL-- 119

Query: 64  EPRTGCGFSKLRIIDLSNNRFSGNLPSKSF--LCWNAMKIVNARRMMTYNKIPDILAGI- 120
                    +  ++D+ +N     +   SF  L + ++ +      +  N I +I     
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL-----WLNKNGIQEIHNSAF 174

Query: 121 ---------ILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLS 171
                    +  NN              G  +L++    +  L    L NL  L +    
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 234

Query: 172 NKKFAGRIPQQLVELTFLEFFNVSDNY 198
           N K   ++P  L +L  L   +++   
Sbjct: 235 NLK---KLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 8/81 (9%)

Query: 124 NNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIP--- 180
               V  IP+ +   +    L      L+ +   +     +LE +++S       I    
Sbjct: 17  QESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74

Query: 181 -QQLVELTFLEFFNVSDNYLT 200
              L +L  +       N L 
Sbjct: 75  FSNLPKLHEIRIEK--ANNLL 93

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 19/104 (18%)

Query: 70  GFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVG 129
           GF  L  I++S N     + +  F                 + +P  L  I +     + 
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVF-----------------SNLPK-LHEIRIEKANNLL 93

Query: 130 AIPASI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
            I      NL  LQ L +    ++ L      +      LD+ +
Sbjct: 94  YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 34/234 (14%), Positives = 65/234 (27%), Gaps = 47/234 (20%)

Query: 14  IPRSLINCSKLEFLGLGNYQISDT----FPSWLGTLPKLNVLILRSNIFYGVIEEPRTGC 69
           +   L+    ++ + L    I           + +   L +          V +E     
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83

Query: 70  GF--------SKLRIIDLSNNRFSGN--------LPSKSFL-----CWNAMKIVNARRMM 108
                      KL  + LS+N F           L   + L       N +      ++ 
Sbjct: 84  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 143

Query: 109 ---------TYNKIPDILAGIILSNNRF----VGAIPASIANLKGLQVLNLQYNNL---- 151
                       K    L  II   NR     +     +  + + L  + +  N +    
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 203

Query: 152 -QGLIPSSLGNLTNLESLDLSNKKF----AGRIPQQLVELTFLEFFNVSDNYLT 200
            + L+   L     L+ LDL +  F    +  +   L     L    ++D  L+
Sbjct: 204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 7e-08
 Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 120 IILSNNRFVGAIPA-SIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGR 178
           + + N + +  +    +  L  L+ L +  + L+ + P +      L  L+LS       
Sbjct: 36  LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-S 94

Query: 179 IPQQLVELTFLEFFNVSDNYLT 200
           +  + V+   L+   +S N L 
Sbjct: 95  LSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 1e-06
 Identities = 19/108 (17%), Positives = 28/108 (25%), Gaps = 13/108 (12%)

Query: 124 NNRFVGAIPASIANLKGLQVLNLQYNN-LQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQ 182
                      +   + L  L ++    LQ L    L  L  L +L +        +   
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 183 -LVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTS-----FDGNSGLC 224
                  L   N+S N L   +       T    S       GN   C
Sbjct: 75  AFHFTPRLSRLNLSFNALES-LSWK----TVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 4/82 (4%)

Query: 13  RIPRSLINCSKLEFLGLGNYQISDTFPSW-LGTLPKLNVLILRSNIFYGVIEEPRTGCGF 71
                L     L  L + N Q         L  L +L  L +  +    V   P      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV--APDAFHFT 79

Query: 72  SKLRIIDLSNNRFSGNLPSKSF 93
            +L  ++LS N    +L  K+ 
Sbjct: 80  PRLSRLNLSFNALE-SLSWKTV 100

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 20/122 (16%)

Query: 108 MTYNKIPDILAG-----------IILSNNRFVGAIPASI-ANLKGLQVLNLQYNNLQGLI 155
           +++N +  + A            ++LS+N  +  I +     +  L+ L+L  N+L  L 
Sbjct: 46  LSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLD 104

Query: 156 PSSLGNLTNLESLDLSNKKFAGRIPQ-QLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 214
                +L  LE L L N      + +    ++  L+   +S N ++   P         +
Sbjct: 105 EFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISR-FPVE----LIKD 158

Query: 215 TS 216
            +
Sbjct: 159 GN 160

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 7e-07
 Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 22/141 (15%)

Query: 70  GFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARR-MMTYNKIPDILAGI-------- 120
             + L  + LS+N  +  + S++F     + + N R   ++ N +  +   +        
Sbjct: 62  RLTNLHSLLLSHNHLN-FISSEAF-----VPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115

Query: 121 --ILSNNRFVGAIPASI-ANLKGLQVLNLQYNNLQGLIP---SSLGNLTNLESLDLSNKK 174
             +L NN  +  +  +   ++  LQ L L  N +             L  L  LDLS+ K
Sbjct: 116 VLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174

Query: 175 FAGRIPQQLVELTFLEFFNVS 195
                   L +L       + 
Sbjct: 175 LKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 21/99 (21%)

Query: 130 AIPASIANLKGLQVLNLQYNNLQGLIP-SSLGNLTNLESLDLSNKKFAGRIP----QQLV 184
            +P S+ +     +L+L +NNL  L    +   LTNL SL LS+      I       + 
Sbjct: 32  NVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88

Query: 185 ELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL 223
            L +L   ++S N+L           T D   F     L
Sbjct: 89  NLRYL---DLSSNHLH----------TLDEFLFSDLQAL 114

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 22/181 (12%), Positives = 48/181 (26%), Gaps = 38/181 (20%)

Query: 20  NCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL 79
              +L FL   + +++      +  L +L       N    +          SKL  +  
Sbjct: 210 QNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDV-----STLSKLTTLHC 261

Query: 80  SNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLK 139
                   +                            L        R +  +   + +  
Sbjct: 262 IQTDLL-EIDLTHNT---------------------QLIYFQAEGCRKIKELD--VTHNT 297

Query: 140 GLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYL 199
            L +L+ Q   +  L    L     L  L L+N +    +   +   T L+  +  + ++
Sbjct: 298 QLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHI 351

Query: 200 T 200
            
Sbjct: 352 Q 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 37/184 (20%), Positives = 62/184 (33%), Gaps = 38/184 (20%)

Query: 17  SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRI 76
            +   +KL +L     +++    S     P L  L    N    +          ++L  
Sbjct: 101 DVTPLTKLTYLNCDTNKLTKLDVS---QNPLLTYLNCARNTLTEI-----DVSHNTQLTE 152

Query: 77  IDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIA 136
           +D   N+    L          +  ++     ++NKI ++                  ++
Sbjct: 153 LDCHLNKKITKLDVTPQ---TQLTTLD----CSFNKITEL-----------------DVS 188

Query: 137 NLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSD 196
             K L  LN   NN+  L    L     L  LD S+ K    I   +  LT L +F+ S 
Sbjct: 189 QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSV 242

Query: 197 NYLT 200
           N LT
Sbjct: 243 NPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 33/208 (15%), Positives = 61/208 (29%), Gaps = 49/208 (23%)

Query: 20  NCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL 79
               L +L      +++     +    +L  L    N               ++L  +D 
Sbjct: 125 QNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLN----KKITKLDVTPQTQLTTLDC 177

Query: 80  SNNRFS----GNLPSKSFLCWNAMKIVNARRMMTYNKIPDI-------LAGIILSNNRFV 128
           S N+ +          + L                N I  +       L  +  S+N+  
Sbjct: 178 SFNKITELDVSQNKLLNRL------------NCDTNNITKLDLNQNIQLTFLDCSSNKLT 225

Query: 129 GAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLT-------NLESLDLSN----KKFAG 177
             I   +  L  L   +   N L  L  S+L  LT       +L  +DL++      F  
Sbjct: 226 -EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA 282

Query: 178 RIPQQLVELTF-----LEFFNVSDNYLT 200
              +++ EL       L   +     +T
Sbjct: 283 EGCRKIKELDVTHNTQLYLLDCQAAGIT 310

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 6/89 (6%)

Query: 113 IPDI-LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLS 171
            PD   A  + +          S   L  L  L+   +++  +  + +  LT L  L  +
Sbjct: 15  FPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICT 72

Query: 172 NKKFAGRIPQQLVELTFLEFFNVSDNYLT 200
           +      +   L + T L +     N LT
Sbjct: 73  SNNITT-LD--LSQNTNLTYLACDSNKLT 98

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 30/191 (15%)

Query: 17  SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRI 76
           S    + L  L   N  I+D   + +  L  L  LI  SN    +          + L  
Sbjct: 37  SEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITTL-----DLSQNTNLTY 89

Query: 77  IDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI-------LAGIILSNNRFVG 129
           +   +N+ + NL          +  +N       NK+  +       L  +  + N    
Sbjct: 90  LACDSNKLT-NLDVTPL---TKLTYLN----CDTNKLTKLDVSQNPLLTYLNCARNTLT- 140

Query: 130 AIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFL 189
                +++   L  L+   N    +    +   T L +LD S  K    +   + +   L
Sbjct: 141 --EIDVSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLL 193

Query: 190 EFFNVSDNYLT 200
              N   N +T
Sbjct: 194 NRLNCDTNNIT 204

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 26/167 (15%), Positives = 62/167 (37%), Gaps = 20/167 (11%)

Query: 20  NCSKLEFLGLGNYQ-ISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIID 78
           N SK+  + + N + ++   P  L  LP L  L + +     +  +           I++
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILE 136

Query: 79  LSNNRFSGNLPSKSFLCWNAMKIVNARR--MMTYNKIPDI---------LAGIILSNNRF 127
           +++N +  ++P  +F       + N      +  N    +         L  + L+ N++
Sbjct: 137 ITDNPYMTSIPVNAF-----QGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKY 191

Query: 128 VGAIPASI-ANLK-GLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           +  I       +  G  +L++   ++  L    L +L  L + +   
Sbjct: 192 LTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 27/191 (14%), Positives = 61/191 (31%), Gaps = 25/191 (13%)

Query: 15  PRSLINCSKLEFLGL-GNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSK 73
             +  N   +  + +  +  +          L K+  + +R+      I+ P        
Sbjct: 48  SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPL 106

Query: 74  LRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPA 133
           L+ + + N       P  + +                    DI   + +++N ++ +IP 
Sbjct: 107 LKFLGIFNTGLK-MFPDLTKV-----------------YSTDIFFILEITDNPYMTSIPV 148

Query: 134 -SIANL-KGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVE--LTFL 189
            +   L      L L  N     +     N T L+++ L+  K+   I +       +  
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207

Query: 190 EFFNVSDNYLT 200
              +VS   +T
Sbjct: 208 SLLDVSQTSVT 218

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 17/109 (15%)

Query: 75  RIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGI----------ILSN 124
             I L  N     +P  +F  +  ++ ++    ++ N+I ++              +L  
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRID----LSNNQISELAPDAFQGLRSLNSLVLYG 89

Query: 125 NRFVGAIPASI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           N+    +P S+   L  LQ+L L  N +  L   +  +L NL  L L +
Sbjct: 90  NKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 11/96 (11%)

Query: 122 LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN---KKFAGR 178
           L  N      P + +  K L+ ++L  N +  L P +   L +L SL L      +    
Sbjct: 39  LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKS 98

Query: 179 IPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 214
           + + L  L  L    ++ N +   +        F +
Sbjct: 99  LFEGLFSLQLL---LLNANKINC-LRVD----AFQD 126

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 17/90 (18%)

Query: 130 AIPASI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIP----QQLV 184
            IP ++   +     + L+ N ++ + P +      L  +DLSN + +  +     Q L 
Sbjct: 25  EIPTNLPETI---TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLR 80

Query: 185 ELTFLEFFNVSDNYLTGPIPQGKQFATFDN 214
            L  L    +  N +T  +P+      F+ 
Sbjct: 81  SLNSL---VLYGNKITE-LPKS----LFEG 102

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 7/97 (7%)

Query: 113 IPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           IP     + L +        A+   L  L  LNL YN LQ L      +LT L +L L+N
Sbjct: 33  IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92

Query: 173 KKFA---GRIPQQLVELTFLEFFNVSDNYLTGPIPQG 206
            + A     +   L +L  L    +  N L   +P G
Sbjct: 93  NQLASLPLGVFDHLTQLDKL---YLGGNQLKS-LPSG 125

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 24/149 (16%)

Query: 78  DLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGII----------LSNNRF 127
           DL +   +  L   +F     +  +N    + YN++  + AG+           L+NN+ 
Sbjct: 41  DLQSTGLA-TLSDATFRGLTKLTWLN----LDYNQLQTLSAGVFDDLTELGTLGLANNQL 95

Query: 128 VGAIPASI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVE- 185
             ++P  +  +L  L  L L  N L+ L       LT L+ L L+  +    IP    + 
Sbjct: 96  A-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDK 153

Query: 186 LTFLEFFNVSDNYLTGPIPQGKQFATFDN 214
           LT L+  ++S N L   +P G     FD 
Sbjct: 154 LTNLQTLSLSTNQLQS-VPHG----AFDR 177

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 16/109 (14%)

Query: 75  RIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGI----------ILSN 124
             + L+NN F+    +  F     ++ +N     + NKI DI  G           +L++
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKIN----FSNNKITDIEEGAFEGASGVNEILLTS 90

Query: 125 NRFVGAIPASI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           NR    +   +   L+ L+ L L+ N +  +   S   L+++  L L +
Sbjct: 91  NRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 20/135 (14%)

Query: 50  VLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARR-MM 108
            L L +N F  V+E         +LR I+ SNN+ + ++   +F              ++
Sbjct: 36  ELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAF-----EGASGVNEILL 88

Query: 109 TYNKIPDILAGI----------ILSNNRFVGAIPASI-ANLKGLQVLNLQYNNLQGLIPS 157
           T N++ ++   +          +L +NR    +       L  +++L+L  N +  + P 
Sbjct: 89  TSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPG 147

Query: 158 SLGNLTNLESLDLSN 172
           +   L +L +L+L  
Sbjct: 148 AFDTLHSLSTLNLLA 162

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 11/105 (10%)

Query: 113 IPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           IP     + L +N+       +   L  L++L L  N LQ L       L NLE+L +++
Sbjct: 35  IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94

Query: 173 KKFA---GRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 214
            K       +  QLV L  L    +  N L   +P       FD+
Sbjct: 95  NKLQALPIGVFDQLVNLAEL---RLDRNQLKS-LPPR----VFDS 131

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 34/150 (22%)

Query: 70  GFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVG 129
             +KLR++ L++N+    LP+  F     ++ +                   +++N+   
Sbjct: 59  RLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW------------------VTDNKLQ- 98

Query: 130 AIPASI-ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQ----QLV 184
           A+P  +   L  L  L L  N L+ L P    +LT L  L L   +    +P+    +L 
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLT 157

Query: 185 ELTFLEFFNVSDNYLTGPIPQGKQFATFDN 214
            L  L    + +N L   +P+G     FD 
Sbjct: 158 SLKEL---RLYNNQLKR-VPEG----AFDK 179

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 33/182 (18%)

Query: 22  SKLEFLGLGNYQISDTFPSWL-GTLPKLNVLILRSN----IFYGVIEEPRTGCGFSKLRI 76
           +KL  L L + ++  T P+ +   L  L  L +  N    +  GV ++         L  
Sbjct: 61  TKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQL------VNLAE 113

Query: 77  IDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASI- 135
           + L  N+   +LP + F       +               L  + L  N    ++P  + 
Sbjct: 114 LRLDRNQLK-SLPPRVF-----DSLTK-------------LTYLSLGYNELQ-SLPKGVF 153

Query: 136 ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVS 195
             L  L+ L L  N L+ +   +   LT L++L L N +           L  L+   + 
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213

Query: 196 DN 197
           +N
Sbjct: 214 EN 215

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 31/132 (23%), Positives = 45/132 (34%), Gaps = 30/132 (22%)

Query: 44  TLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFS--GNLPSKSFLCWNAMKI 101
            + +L +   RSN      +       F +L  +   N   +   NLP  + L       
Sbjct: 18  DVKELVLDNSRSNE----GKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKK----- 68

Query: 102 VNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGL-IPSSLG 160
                             + LS+NR  G +         L  LNL  N ++ L     L 
Sbjct: 69  ------------------LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK 110

Query: 161 NLTNLESLDLSN 172
            L NL+SLDL N
Sbjct: 111 KLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 135 IANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAG-RIPQQLVELTFLEFFN 193
           +  L  L+ L L  N + G +        NL  L+LS  K       + L +L  L+  +
Sbjct: 60  LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119

Query: 194 VSDN 197
           + + 
Sbjct: 120 LFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 111 NKIPDILAGIILSNNRF-VGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLD 169
           N+ P  +  ++L N+R   G +       + L+ L+     L  +  ++L  L  L+ L+
Sbjct: 13  NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLE 70

Query: 170 LSNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200
           LS+ + +G +     +   L   N+S N + 
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 38/167 (22%), Positives = 53/167 (31%), Gaps = 41/167 (24%)

Query: 44  TLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFS--GNLPSKSFLCWNAMKI 101
           T   +  L+L  N      +       F  L  + L N       NLP    L       
Sbjct: 22  TPAAVRELVL-DNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKK----- 75

Query: 102 VNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGL-IPSSLG 160
                             + LS NR  G +      L  L  LNL  N L+ +     L 
Sbjct: 76  ------------------LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLK 117

Query: 161 NLTNLESLDLSN----------KKFAGRIPQQLVELTFLEFFNVSDN 197
            L  L+SLDL N          +     +PQ    LT+L+ ++  D 
Sbjct: 118 KLECLKSLDLFNCEVTNLNDYRESVFKLLPQ----LTYLDGYDREDQ 160

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 98  AMKIVNARRMMTYNKIPDILAGIILSNNRF-VGAIPASIANLKGLQVLNLQYNNLQGLIP 156
            M +     +   N+ P  +  ++L N +   G I    A    L+ L+L    L  +  
Sbjct: 7   GMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-- 64

Query: 157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200
           S+L  L  L+ L+LS  +  G +     +L  L   N+S N L 
Sbjct: 65  SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 3e-05
 Identities = 15/151 (9%), Positives = 45/151 (29%), Gaps = 23/151 (15%)

Query: 45  LPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL---SNNRFSGNLPSKSFLCWNAMKI 101
            P L  L + S      + E   G     L  + L     +       +     ++  + 
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 102 VNARRMMTYNKIPDILAGIILSNNRFVGAIPASIAN---LKGLQVLNLQYNNLQG----L 154
            N + +              + +      +         L  L+ +++    L      L
Sbjct: 252 PNLKWLG-------------IVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARL 298

Query: 155 IPSSLGNLTNLESLDLSNKKFAGRIPQQLVE 185
           +   +  + +L+ +++     +  + ++L +
Sbjct: 299 LLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 137 NLKGLQVLNLQYNNLQGLIPSSLGN---LTNLESLDLSNKKF----AGRIPQQLVELTFL 189
               L+ L +     Q ++         L  LE++D+S        A  +   + ++  L
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309

Query: 190 EFFNVSDNYLT 200
           +F N+  NYL+
Sbjct: 310 KFINMKYNYLS 320

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 14/97 (14%)

Query: 122 LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQ 181
           L  N+F   +P  ++N K L +++L  N +  L   S  N+T L +L LS  +    IP 
Sbjct: 38  LDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPP 95

Query: 182 ----QLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 214
                L  L  L   ++  N ++  +P+G     F++
Sbjct: 96  RTFDGLKSLRLL---SLHGNDISV-VPEG----AFND 124

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 31/134 (23%), Positives = 48/134 (35%), Gaps = 31/134 (23%)

Query: 42  LGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFS--GNLPSKSFLCWNAM 99
           L TL     L L +N     IE+  +  G   LRI+ L  N      NL + +    + +
Sbjct: 44  LSTLKACKHLALSTNN----IEKISSLSGMENLRILSLGRNLIKKIENLDAVA----DTL 95

Query: 100 KIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP-SS 158
           + +       YN+I  +                + I  L  L+VL +  N +        
Sbjct: 96  EELWIS----YNQIASL----------------SGIEKLVNLRVLYMSNNKITNWGEIDK 135

Query: 159 LGNLTNLESLDLSN 172
           L  L  LE L L+ 
Sbjct: 136 LAALDKLEDLLLAG 149

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 33/194 (17%), Positives = 49/194 (25%), Gaps = 67/194 (34%)

Query: 17  SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRI 76
              N  +   L L  Y+I                           IE    G    +   
Sbjct: 14  QYTNAVRDRELDLRGYKIPV-------------------------IEN--LGATLDQFDA 46

Query: 77  IDLSNNRFS--GNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPAS 134
           ID S+N        P    L                         ++++NNR        
Sbjct: 47  IDFSDNEIRKLDGFPLLRRLKT-----------------------LLVNNNRICRIGEGL 83

Query: 135 IANLKGLQVLNLQYNNLQGL-IPSSLGNLTNLESLDLSN----------KKFAGRIPQQL 183
              L  L  L L  N+L  L     L +L +L  L +                 ++PQ  
Sbjct: 84  DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQ-- 141

Query: 184 VELTFLEFFNVSDN 197
             +  L+F  V   
Sbjct: 142 --VRVLDFQKVKLK 153

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 7/97 (7%)

Query: 113 IPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           IP     + L  N            L  L  L L  N LQ L       LT+L  L+LS 
Sbjct: 26  IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85

Query: 173 ---KKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 206
              +     +  +L +L  L    ++ N L   +P G
Sbjct: 86  NQLQSLPNGVFDKLTQLKEL---ALNTNQLQS-LPDG 118

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 130 AIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           ++P +         L L  NNL  L P  L  L  L +  L  
Sbjct: 24  SLPTAFPV--DTTELVLTGNNLTALPPGLLDALPALRTAHLGA 64

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 7/97 (7%)

Query: 113 IPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           IP     + L +N+     P    +L  L+ L L  N L  L      +LT L  LDL  
Sbjct: 38  IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97

Query: 173 ---KKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 206
                    +  +LV L  L    +  N LT  +P+G
Sbjct: 98  NQLTVLPSAVFDRLVHLKEL---FMCCNKLTE-LPRG 130

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	305
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.92
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.89
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.89
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.88
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.88
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.88
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.88
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.88
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.87
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.86
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.86
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.83
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.82
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.8
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.8
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.78
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.77
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.77
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.75
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.73
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.68
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.66
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.66
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.64
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.63
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.61
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.6
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.57
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.55
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.51
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.5
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.47
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.47
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.45
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.44
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.42
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.39
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.35
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.03
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.74
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.73
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.71
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.66
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.65
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.62
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.5
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.21
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.1
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.07
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.07
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.91
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.77
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.61
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.56
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.34
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.11
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	91.03
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	91.01

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.3e-36  Score=291.21  Aligned_cols=231  Identities=35%  Similarity=0.531  Sum_probs=172.0

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN   81 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~   81 (305)
                      +|+|++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|+|++|.+++.+|..+  +.+++|++|++++
T Consensus       446 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~  523 (768)
T 3rgz_A          446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSN  523 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCS
T ss_pred             EEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCC
Confidence            44555555555555555555555555555555555555555555555555555555555544444  4555555555555


Q ss_pred             CcCcccCChhhhhccchhhhhhhccccc----------------------------------------------------
Q 040815           82 NRFSGNLPSKSFLCWNAMKIVNARRMMT----------------------------------------------------  109 (305)
Q Consensus        82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~----------------------------------------------------  109 (305)
                      |.++|.+|.. +..+++|+.|+++.+..                                                    
T Consensus       524 N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  602 (768)
T 3rgz_A          524 NSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE  602 (768)
T ss_dssp             SCCEEECCGG-GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred             CcccCcCCHH-HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence            5555555543 55555555555443100                                                    


Q ss_pred             ------------------------cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCC
Q 040815          110 ------------------------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNL  165 (305)
Q Consensus       110 ------------------------~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  165 (305)
                                              ....++.|+.||+++|.++|.+|..+++++.|+.|+|++|+++|.+|..++++++|
T Consensus       603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L  682 (768)
T 3rgz_A          603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL  682 (768)
T ss_dssp             GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC
Confidence                                    01124678999999999999999999999999999999999999999999999999


Q ss_pred             CEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCCCCCCCCCCCCCC
Q 040815          166 ESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGE  236 (305)
Q Consensus       166 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~~~c~~~~  236 (305)
                      ++|||++|+++|.+|..+..++.|++||+++|+++|.+|...++.++...+|.|||.+||.|+. .|....
T Consensus       683 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN  752 (768)
T ss_dssp             CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred             CEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999987 787654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.7e-34  Score=250.30  Aligned_cols=225  Identities=29%  Similarity=0.429  Sum_probs=151.2

Q ss_pred             EEEccC-CccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            2 EAKRSH-NLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         2 ~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      +|+|++ |.+.+.+|..|.++++|++|++++|.+++.+|..|..+++|++|++++|.+++..|..+  ..+++|++|+++
T Consensus        80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~  157 (313)
T 1ogq_A           80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI--SSLPNLVGITFD  157 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCEEECC
T ss_pred             eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH--hcCCCCCeEECc
Confidence            344442 44444444445555555555555555544445455555555555555555544444333  445555555555


Q ss_pred             CCcCcccCChhhhhccc-hhhhhhhcccccc------CcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccc
Q 040815           81 NNRFSGNLPSKSFLCWN-AMKIVNARRMMTY------NKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG  153 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~-~L~~l~l~~~~~~------~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  153 (305)
                      +|.+++.+|.. +..+. +|+.|+++.+...      ...+. |+.|++++|.+++..|..+..+++|+.|+|++|.+++
T Consensus       158 ~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  235 (313)
T 1ogq_A          158 GNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             SSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             CCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence            55555555543 34443 5555555432111      11122 7777777777777777777888888888888888886


Q ss_pred             cCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCCCCCCCCCC
Q 040815          154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGC  232 (305)
Q Consensus       154 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~~~c  232 (305)
                      .+|. +..+++|++|++++|.+++.+|..+..+++|++|++++|+++|.+|....++.+..+.+.+|+++|+.|.. .|
T Consensus       236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            6655 77889999999999999999999999999999999999999999999888889999999999999998765 35

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.97  E-value=1.1e-31  Score=262.84  Aligned_cols=220  Identities=25%  Similarity=0.293  Sum_probs=143.5

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN   81 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~   81 (305)
                      +|+|++|.+.+..+..|..+++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..+..+  ..+++|+.|++++
T Consensus       270 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~  347 (844)
T 3j0a_A          270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQK  347 (844)
T ss_dssp             EEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC--SSCTTCCEEECCS
T ss_pred             EEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh--cCCCCCCEEECCC
Confidence            56666666666666666666666666666666666556666666666666666666665555444  5566666666666


Q ss_pred             CcCcccCChhhhhccchhhhhhhcccccc----------------------------------------------Ccccc
Q 040815           82 NRFSGNLPSKSFLCWNAMKIVNARRMMTY----------------------------------------------NKIPD  115 (305)
Q Consensus        82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~~----------------------------------------------~~~~~  115 (305)
                      |.+. .++...|..+++|+.|+++++...                                              ...++
T Consensus       348 N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~  426 (844)
T 3j0a_A          348 NHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP  426 (844)
T ss_dssp             CCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCT
T ss_pred             CCCC-ccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCC
Confidence            6665 455445555555555555431100                                              00123


Q ss_pred             cccEEEccCCcccc------------------------------ccchhhhCCCCCCEEecCCccccccCCccccCCCCC
Q 040815          116 ILAGIILSNNRFVG------------------------------AIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNL  165 (305)
Q Consensus       116 ~L~~L~ls~n~l~~------------------------------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  165 (305)
                      .|+.|++++|.+++                              ..+..|..+++|+.|+|++|++++.+|..|..+++|
T Consensus       427 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  506 (844)
T 3j0a_A          427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL  506 (844)
T ss_dssp             TCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC
T ss_pred             ccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh
Confidence            44444444444432                              223446667778888888888887777778888888


Q ss_pred             CEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCCCCCC
Q 040815          166 ESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPL  228 (305)
Q Consensus       166 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~  228 (305)
                      ++|+|++|++++..+..+.  ++|+.||+++|++++..|.  .+..+..+++.+||+.|+|+.
T Consensus       507 ~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          507 RGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             SEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCCCSSSC
T ss_pred             heeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh--HhCCcCEEEecCCCccccccc
Confidence            8888888888866655554  7788888888888887775  456778888999999999875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=8.4e-31  Score=239.46  Aligned_cols=223  Identities=20%  Similarity=0.145  Sum_probs=199.4

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.|++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.++...+..+  ..+++|++|+|+
T Consensus        78 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~  155 (452)
T 3zyi_A           78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF--EYLSKLRELWLR  155 (452)
T ss_dssp             SEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTS--SSCTTCCEEECC
T ss_pred             cEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhh--cccCCCCEEECC
Confidence            579999999998889999999999999999999998888999999999999999999998876666  789999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhcccc-------ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMM-------TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG  153 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~-------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  153 (305)
                      +|.+. .+|...|..+++|+.|++....       .....+++|+.|++++|.+++ +| .+..+++|+.|+|++|.+++
T Consensus       156 ~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          156 NNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             SCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence            99999 8888889999999999987622       123457889999999999984 45 47889999999999999999


Q ss_pred             cCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040815          154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL  228 (305)
Q Consensus       154 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~  228 (305)
                      ..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+.. ..+..+..+.+.+||+.|+|..
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            98999999999999999999999988999999999999999999999655543 4567788889999999999974

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=1e-30  Score=238.12  Aligned_cols=223  Identities=20%  Similarity=0.159  Sum_probs=199.4

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.++...+..+  ..+++|+.|+++
T Consensus        67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~  144 (440)
T 3zyj_A           67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF--VYLSKLKELWLR  144 (440)
T ss_dssp             SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS--CSCSSCCEEECC
T ss_pred             cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHh--hccccCceeeCC
Confidence            579999999998888999999999999999999998888899999999999999999998776666  889999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhcccc-------ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMM-------TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG  153 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~-------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  153 (305)
                      +|.+. .++...|..+++|+.|++....       .....+++|+.|++++|.++ .+| .+..+++|+.|+|++|.+++
T Consensus       145 ~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          145 NNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             SCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred             CCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence            99999 8888889999999999987622       22345788999999999998 566 47889999999999999999


Q ss_pred             cCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040815          154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL  228 (305)
Q Consensus       154 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~  228 (305)
                      ..|..|..+++|++|+|++|++++..+..|..+++|++|++++|.+++..+.. ..+..+..+++.+||+.|+|..
T Consensus       222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            88999999999999999999999998999999999999999999999665543 4567788889999999999954

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=4.8e-30  Score=248.78  Aligned_cols=220  Identities=29%  Similarity=0.375  Sum_probs=166.2

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++..|..+  ..+++|+.|+++
T Consensus       421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L~  498 (768)
T 3rgz_A          421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLS  498 (768)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECC
T ss_pred             CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH--hcCCCCCEEEcc
Confidence            356666666666666666667777777777777766677777777777777777777776665555  667777888888


Q ss_pred             CCcCcccCChhhhhccchhhhhhhcccccc------CcccccccEEEccCCccccccchhhhC-----------------
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTY------NKIPDILAGIILSNNRFVGAIPASIAN-----------------  137 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~------~~~~~~L~~L~ls~n~l~~~~p~~~~~-----------------  137 (305)
                      +|++++.+|.. +..+++|+.|++.++...      ...++.|+.|++++|.++|.+|..+..                 
T Consensus       499 ~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~  577 (768)
T 3rgz_A          499 NNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY  577 (768)
T ss_dssp             SSCCCSCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred             CCccCCcCChH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence            88777777754 677777777777653221      233567888888888888777765432                 


Q ss_pred             -----------------------------------------------------CCCCCEEecCCccccccCCccccCCCC
Q 040815          138 -----------------------------------------------------LKGLQVLNLQYNNLQGLIPSSLGNLTN  164 (305)
Q Consensus       138 -----------------------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~  164 (305)
                                                                           +++|+.|||++|+++|.+|..++.+++
T Consensus       578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~  657 (768)
T 3rgz_A          578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY  657 (768)
T ss_dssp             EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc
Confidence                                                                 456888999999999999999999999


Q ss_pred             CCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCC
Q 040815          165 LESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGL  223 (305)
Q Consensus       165 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~  223 (305)
                      |+.|+|++|.++|.+|..+..+++|+.||+++|+++|.+|.. ..+..+..+++.+|...
T Consensus       658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence            999999999999999999999999999999999999999875 44566777778887643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=2e-30  Score=225.80  Aligned_cols=218  Identities=23%  Similarity=0.331  Sum_probs=192.0

Q ss_pred             CEEEccCCcccc--ccchhccCCCCCcEEeCCC-cccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEE
Q 040815            1 MEAKRSHNLFEG--RIPRSLINCSKLEFLGLGN-YQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII   77 (305)
Q Consensus         1 ~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L   77 (305)
                      ++|+|++|.+++  .+|..+.++++|++|++++ |.+.+.+|..|+.+++|++|+|++|.+++..|..+  ..+++|++|
T Consensus        53 ~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L  130 (313)
T 1ogq_A           53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTLVTL  130 (313)
T ss_dssp             EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTCCEE
T ss_pred             EEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH--hCCCCCCEE
Confidence            369999999999  8999999999999999995 99999999999999999999999999998887766  889999999


Q ss_pred             EccCCcCcccCChhhhhccchhhhhhhccccc-------cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcc
Q 040815           78 DLSNNRFSGNLPSKSFLCWNAMKIVNARRMMT-------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNN  150 (305)
Q Consensus        78 ~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~-------~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~  150 (305)
                      ++++|.+.+.+|.. +..+++|+.|+++.+..       +....+.|+.|++++|.+++.+|..+..++ |+.|++++|.
T Consensus       131 ~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          131 DFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             ECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             eCCCCccCCcCChH-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            99999999888865 88999999999876432       222234899999999999999999999987 9999999999


Q ss_pred             ccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCC
Q 040815          151 LQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGL  223 (305)
Q Consensus       151 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~  223 (305)
                      +++.+|..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+++.+|.. ..+..+..+++.+|...
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence            9999999999999999999999999977766 788999999999999999888864 45667777888888654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=3.2e-29  Score=228.88  Aligned_cols=115  Identities=23%  Similarity=0.191  Sum_probs=88.1

Q ss_pred             cccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEe
Q 040815          114 PDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFN  193 (305)
Q Consensus       114 ~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  193 (305)
                      ++.|+.|++++|.+++..|..|..+++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..|..+..+++|++|+
T Consensus       298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  377 (455)
T 3v47_A          298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA  377 (455)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence            45667777777777766666777777777777777777776677777788888888888888877777888888888888


Q ss_pred             ccCCcccCCCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040815          194 VSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL  228 (305)
Q Consensus       194 l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~  228 (305)
                      +++|.+++..+.. ..++.+..+++.+|++.|+||.
T Consensus       378 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            8888888654433 4567788888999999999873

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=2.6e-29  Score=238.01  Aligned_cols=111  Identities=21%  Similarity=0.305  Sum_probs=91.0

Q ss_pred             cEEEccCCcc-ccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccC
Q 040815          118 AGIILSNNRF-VGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSD  196 (305)
Q Consensus       118 ~~L~ls~n~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~  196 (305)
                      +.|++++|.+ .+..|..|..+++|++|+|++|++++..|.+|.++++|++|+|++|++++..|..+..+++|++||+++
T Consensus       472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~  551 (635)
T 4g8a_A          472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL  551 (635)
T ss_dssp             CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred             hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence            3344444432 223456677788999999999999998899999999999999999999988888999999999999999


Q ss_pred             CcccCCCCCC-CCC-CccCCCccCCCCCCCCCCC
Q 040815          197 NYLTGPIPQG-KQF-ATFDNTSFDGNSGLCGKPL  228 (305)
Q Consensus       197 N~l~~~~p~~-~~~-~~l~~~~~~~n~~~c~~~~  228 (305)
                      |++++..|.. ..+ ..+..+++.+||+.|+|..
T Consensus       552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          552 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             SCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             CcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            9999887764 233 4678889999999999964

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=4.7e-29  Score=214.23  Aligned_cols=221  Identities=17%  Similarity=0.192  Sum_probs=163.8

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN   81 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~   81 (305)
                      +++.+++.++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+  ..+++|++|++++
T Consensus        15 ~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~   89 (285)
T 1ozn_A           15 TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF--TGLALLEQLDLSD   89 (285)
T ss_dssp             EEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCS
T ss_pred             EEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhc--CCccCCCEEeCCC
Confidence            4666666666 455433  4567777777777766555666777777777777777766655555  6667777777777


Q ss_pred             Cc-CcccCChhhhhccchhhhhhhcccc------ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccccc
Q 040815           82 NR-FSGNLPSKSFLCWNAMKIVNARRMM------TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGL  154 (305)
Q Consensus        82 n~-l~g~~p~~~~~~l~~L~~l~l~~~~------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  154 (305)
                      |. +. .++...|..+++|+.|++.++.      .....++.|++|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus        90 n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           90 NAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             CTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence            76 44 5555556667777777665421      1123367788999999999876677788899999999999999977


Q ss_pred             CCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC-CCCCCccCCCccCCCCCCCCCCC
Q 040815          155 IPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSFDGNSGLCGKPL  228 (305)
Q Consensus       155 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~~  228 (305)
                      .+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+. ...++.+..+++.+|++.|+|+.
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            777788899999999999999988888899999999999999999865543 24567778888999999998864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.96  E-value=1.5e-27  Score=203.38  Aligned_cols=203  Identities=22%  Similarity=0.224  Sum_probs=170.5

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++++++++.++ .+|..+.  +++++|++++|++++..+..|..+++|++|++++|.++...+..+  ..+++|++|+++
T Consensus        19 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~--~~l~~L~~L~l~   93 (270)
T 2o6q_A           19 NSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF--KELKNLETLWVT   93 (270)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT--SSCTTCCEEECC
T ss_pred             CEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhh--cCCCCCCEEECC
Confidence            46899999999 5776654  789999999999988777789999999999999999987766555  789999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG  160 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  160 (305)
                      +|.+. .+|...|..                  ++.|+.|++++|.+++..+..|..+++|+.|+|++|.+++..+..|.
T Consensus        94 ~n~l~-~~~~~~~~~------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  154 (270)
T 2o6q_A           94 DNKLQ-ALPIGVFDQ------------------LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD  154 (270)
T ss_dssp             SSCCC-CCCTTTTTT------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCcCC-cCCHhHccc------------------ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence            99998 777665554                  45577888999999977778888999999999999999977667788


Q ss_pred             CCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC-CCCCCccCCCccCCCCCCCCCC
Q 040815          161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSFDGNSGLCGKP  227 (305)
Q Consensus       161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~  227 (305)
                      .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+. ...+..+..+.+.+||+.|+|+
T Consensus       155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            999999999999999977777788899999999999999865443 2446677888899999999886

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=8.3e-29  Score=216.99  Aligned_cols=200  Identities=16%  Similarity=0.165  Sum_probs=169.3

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..+  ..+++|++|+++
T Consensus        84 ~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l--~~l~~L~~L~L~  158 (328)
T 4fcg_A           84 VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI--ASLNRLRELSIR  158 (328)
T ss_dssp             CEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG--GGCTTCCEEEEE
T ss_pred             eEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH--hcCcCCCEEECC
Confidence            47999999999 78888999999999999999998 78999999999999999999998 445554  889999999999


Q ss_pred             CCcCcccCChhh--------hhccchhhhhhhccccc-----cCcccccccEEEccCCccccccchhhhCCCCCCEEecC
Q 040815           81 NNRFSGNLPSKS--------FLCWNAMKIVNARRMMT-----YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQ  147 (305)
Q Consensus        81 ~n~l~g~~p~~~--------~~~l~~L~~l~l~~~~~-----~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls  147 (305)
                      +|++.+.+|...        |..+++|+.|+++.+..     ....++.|+.|++++|.++ .+|..+..+++|++|+|+
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls  237 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLR  237 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECT
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECc
Confidence            988888888753        23478888888776321     1233668889999999988 466678888999999999


Q ss_pred             CccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC
Q 040815          148 YNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG  206 (305)
Q Consensus       148 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~  206 (305)
                      +|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..
T Consensus       238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~  296 (328)
T 4fcg_A          238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL  296 (328)
T ss_dssp             TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred             CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence            98888888888888999999999998888888888888999999999999888888863

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=2.3e-28  Score=224.72  Aligned_cols=227  Identities=20%  Similarity=0.236  Sum_probs=159.8

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCC--------------
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPR--------------   66 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~--------------   66 (305)
                      ++|+|++|.+++..|.+|.++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..+              
T Consensus        59 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n  138 (477)
T 2id5_A           59 EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN  138 (477)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred             CEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC
Confidence            456677777666666666666666666666666665444455666666666666666655444333              


Q ss_pred             --------CCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccc------cCcc-------------------
Q 040815           67 --------TGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMT------YNKI-------------------  113 (305)
Q Consensus        67 --------~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~------~~~~-------------------  113 (305)
                              .+..+++|+.|++++|.++ .++...+..+++|+.|++..+..      ....                   
T Consensus       139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  217 (477)
T 2id5_A          139 DLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT  217 (477)
T ss_dssp             TCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred             ccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence                    1144555555555555555 45555555555555555443100      0000                   


Q ss_pred             -----cccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCC
Q 040815          114 -----PDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTF  188 (305)
Q Consensus       114 -----~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  188 (305)
                           ..+|+.|++++|.+++..+..+..+++|+.|+|++|.+++..+..|..+++|++|+|++|++++..|..+..+++
T Consensus       218 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  297 (477)
T 2id5_A          218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY  297 (477)
T ss_dssp             TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred             cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence                 126777888888888555567889999999999999999888888999999999999999999988999999999


Q ss_pred             CCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040815          189 LEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL  228 (305)
Q Consensus       189 L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~  228 (305)
                      |++|++++|.+++..+.. ..+..+..+.+.+|++.|+|+.
T Consensus       298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~  338 (477)
T 2id5_A          298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL  338 (477)
T ss_dssp             CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred             CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence            999999999999655432 4566788889999999999853

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.1e-28  Score=214.03  Aligned_cols=224  Identities=17%  Similarity=0.181  Sum_probs=187.5

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCC--cChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEE
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDT--FPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIID   78 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~   78 (305)
                      ++|+|++|.++...+..|.++++|++|++++|.++..  .+..+..+++|++|++++|.++... ..+  ..+++|++|+
T Consensus        31 ~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~-~~~--~~l~~L~~L~  107 (306)
T 2z66_A           31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNF--LGLEQLEHLD  107 (306)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEE-EEE--ETCTTCCEEE
T ss_pred             CEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccCh-hhc--CCCCCCCEEE
Confidence            5799999999955555689999999999999998733  3667778999999999999987643 233  7799999999


Q ss_pred             ccCCcCcccCCh-hhhhccchhhhhhhcccc------ccCcccccccEEEccCCcccc-ccchhhhCCCCCCEEecCCcc
Q 040815           79 LSNNRFSGNLPS-KSFLCWNAMKIVNARRMM------TYNKIPDILAGIILSNNRFVG-AIPASIANLKGLQVLNLQYNN  150 (305)
Q Consensus        79 L~~n~l~g~~p~-~~~~~l~~L~~l~l~~~~------~~~~~~~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~  150 (305)
                      +++|.+. .++. ..+..+++|+.|+++.+.      .....++.|+.|++++|.+++ ..|..+..+++|+.|++++|.
T Consensus       108 l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          108 FQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             CTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             CCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            9999998 5554 568889999999987632      123346889999999999986 578889999999999999999


Q ss_pred             ccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCC-CccCCCccCCCCCCCCCCC
Q 040815          151 LQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQF-ATFDNTSFDGNSGLCGKPL  228 (305)
Q Consensus       151 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~-~~l~~~~~~~n~~~c~~~~  228 (305)
                      +++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|.. ..+ ..+..+++.+|++.|+|+.
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence            99888999999999999999999999877778899999999999999999887754 334 3678888999999998753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2e-29  Score=223.08  Aligned_cols=223  Identities=18%  Similarity=0.194  Sum_probs=182.4

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+  ..+++|++|+++
T Consensus        55 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~  132 (353)
T 2z80_A           55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF--KPLSSLTFLNLL  132 (353)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHH--TTCTTCSEEECT
T ss_pred             cEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHh--CCCccCCEEECC
Confidence            578999999997666689999999999999999988778889999999999999999987654434  778999999999


Q ss_pred             CCcCcccCCh-hhhhccchhhhhhhcccc-------ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccc
Q 040815           81 NNRFSGNLPS-KSFLCWNAMKIVNARRMM-------TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQ  152 (305)
Q Consensus        81 ~n~l~g~~p~-~~~~~l~~L~~l~l~~~~-------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  152 (305)
                      +|.+. .+|. ..|..+++|+.|+++.+.       .....++.|+.|++++|.+++..|..+..+++|++|++++|.++
T Consensus       133 ~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          133 GNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            99998 7776 668889999999887642       12234678899999999998888888999999999999999887


Q ss_pred             ccCCccccCCCCCCEEeCCCCcCCcc-------------------------------CccccccCCCCCEEeccCCcccC
Q 040815          153 GLIPSSLGNLTNLESLDLSNKKFAGR-------------------------------IPQQLVELTFLEFFNVSDNYLTG  201 (305)
Q Consensus       153 ~~~p~~~~~l~~L~~L~L~~N~l~~~-------------------------------~p~~~~~l~~L~~L~l~~N~l~~  201 (305)
                      ...+..+..+++|++|++++|.+++.                               +|..+..+++|++|++++|.++ 
T Consensus       212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-  290 (353)
T 2z80_A          212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-  290 (353)
T ss_dssp             THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred             cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence            44333445688899999999988763                               3455778899999999999999 


Q ss_pred             CCCCC--CCCCccCCCccCCCCCCCCCC
Q 040815          202 PIPQG--KQFATFDNTSFDGNSGLCGKP  227 (305)
Q Consensus       202 ~~p~~--~~~~~l~~~~~~~n~~~c~~~  227 (305)
                      .+|..  ..++.+..+++.+|++.|+|+
T Consensus       291 ~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          291 SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            55553  467788889999999999986

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.95  E-value=1.3e-27  Score=204.29  Aligned_cols=205  Identities=20%  Similarity=0.213  Sum_probs=136.4

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN   81 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~   81 (305)
                      +|+|++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+  ..+++|++|++++
T Consensus        32 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~  109 (276)
T 2z62_A           32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAVE  109 (276)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEEECTT
T ss_pred             EEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh--cCCccccEEECCC
Confidence            45555555554444445555555555555555544444445555555555555555544443333  4455555555555


Q ss_pred             CcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccc-cchhhhCCCCCCEEecCCccccccCCcccc
Q 040815           82 NRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGA-IPASIANLKGLQVLNLQYNNLQGLIPSSLG  160 (305)
Q Consensus        82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  160 (305)
                      |.+. .++...+                  ..++.|+.|++++|.+++. +|..+..+++|+.|++++|++++..+..+.
T Consensus       110 n~l~-~~~~~~~------------------~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  170 (276)
T 2z62_A          110 TNLA-SLENFPI------------------GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  170 (276)
T ss_dssp             SCCC-CSTTCCC------------------TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             CCcc-ccCchhc------------------ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence            5554 3332212                  2356788899999999863 688999999999999999999987777777


Q ss_pred             CCCCCC----EEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040815          161 NLTNLE----SLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL  228 (305)
Q Consensus       161 ~l~~L~----~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~  228 (305)
                      .+++|+    +|++++|.+++..+..+ ...+|++|++++|.+++..+.. ..+..+..+.+.+|++.|+|+.
T Consensus       171 ~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          171 VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             HHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             hhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            777776    89999999986555544 4458999999999999665543 4567788888999999999863

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.95  E-value=9e-28  Score=215.27  Aligned_cols=219  Identities=17%  Similarity=0.157  Sum_probs=145.1

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++..+..|..+++|++|++++|.+++..|..|+.+++|++|++++|.++...+..+  ..+++|++|+++
T Consensus        72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~l~~L~~L~L~  149 (390)
T 3o6n_A           72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF--HNTPKLTTLSMS  149 (390)
T ss_dssp             SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred             cEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHh--cCCCCCcEEECC
Confidence            467777887776666677777888888888887777667777777788888888887776544444  567777777777


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccc---------------------------------------------------
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT---------------------------------------------------  109 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~---------------------------------------------------  109 (305)
                      +|.+. .+++..|..+++|+.|++..+..                                                   
T Consensus       150 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L  228 (390)
T 3o6n_A          150 NNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL  228 (390)
T ss_dssp             SSCCC-BCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSC
T ss_pred             CCccC-ccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccc
Confidence            77777 55555577777777766554110                                                   


Q ss_pred             --------------cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcC
Q 040815          110 --------------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF  175 (305)
Q Consensus       110 --------------~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  175 (305)
                                    ....++.|+.|++++|.+++..|..+..+++|+.|+|++|++++ +|..+..+++|++|++++|.+
T Consensus       229 ~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l  307 (390)
T 3o6n_A          229 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL  307 (390)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCC
T ss_pred             cEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcc
Confidence                          01113455566666666665556666666666666666666663 344455666667777777766


Q ss_pred             CccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCCCC
Q 040815          176 AGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGK  226 (305)
Q Consensus       176 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~  226 (305)
                      + .+|..+..+++|++|++++|.++.. | ...++.+..+++.+|++.|++
T Consensus       308 ~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          308 L-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             C-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred             e-ecCccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCCCccchh
Confidence            6 4555566677777777777777643 3 335667777788888888865

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=9.5e-28  Score=226.53  Aligned_cols=219  Identities=17%  Similarity=0.157  Sum_probs=153.2

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..+..+  ..+++|++|+++
T Consensus        78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~l~~L~~L~Ls  155 (597)
T 3oja_B           78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF--HNTPKLTTLSMS  155 (597)
T ss_dssp             SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred             cEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHh--ccCCCCCEEEee
Confidence            468888888887777788888888888888888887777777888888888888888876655544  677888888888


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccc---------------------------------------------------
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT---------------------------------------------------  109 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~---------------------------------------------------  109 (305)
                      +|.+. .+++..|..+++|+.|+++++..                                                   
T Consensus       156 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L  234 (597)
T 3oja_B          156 NNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL  234 (597)
T ss_dssp             SSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCC
T ss_pred             CCcCC-CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCC
Confidence            88887 45555577777777777654210                                                   


Q ss_pred             --------------cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcC
Q 040815          110 --------------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF  175 (305)
Q Consensus       110 --------------~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  175 (305)
                                    ....++.|+.|++++|.+++..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+
T Consensus       235 ~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l  313 (597)
T 3oja_B          235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL  313 (597)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCC
T ss_pred             CEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCC
Confidence                          01123456666666666666666666666666666666666664 355555667777777777777


Q ss_pred             CccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCCCC
Q 040815          176 AGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGK  226 (305)
Q Consensus       176 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~  226 (305)
                      + .+|..+..+++|++|++++|.+++. | ...++.+..+.+.+|++.|+|
T Consensus       314 ~-~i~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          314 L-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             C-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred             C-ccCcccccCCCCCEEECCCCCCCCc-C-hhhcCCCCEEEeeCCCCCChh
Confidence            6 5666667777777777777777644 2 235667778888899888865

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=7.1e-28  Score=227.66  Aligned_cols=227  Identities=19%  Similarity=0.177  Sum_probs=140.0

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcCh-hccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPS-WLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L   79 (305)
                      ++|++++|.+++..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++....+..+..+++|+.|++
T Consensus       304 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l  383 (606)
T 3t6q_A          304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL  383 (606)
T ss_dssp             CEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEEC
T ss_pred             CEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEEC
Confidence            4566677766655565666666666666666665544433 255555555555555555544311111244445555555


Q ss_pred             cCCc------------------------CcccCChhhhhccchhhhhhhcccc------ccCcccccccEEEccCCcccc
Q 040815           80 SNNR------------------------FSGNLPSKSFLCWNAMKIVNARRMM------TYNKIPDILAGIILSNNRFVG  129 (305)
Q Consensus        80 ~~n~------------------------l~g~~p~~~~~~l~~L~~l~l~~~~------~~~~~~~~L~~L~ls~n~l~~  129 (305)
                      ++|.                        +.+..+...+..+++|+.|+++++.      .....++.|++|++++|.+++
T Consensus       384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  463 (606)
T 3t6q_A          384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK  463 (606)
T ss_dssp             CSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred             CCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence            5544                        4433333334445555555544321      112235567777777777664


Q ss_pred             c---cchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC
Q 040815          130 A---IPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG  206 (305)
Q Consensus       130 ~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~  206 (305)
                      .   .+..+..+++|+.|++++|.+++..|..|..+++|++|++++|++++..|..+..++.| +|++++|.+++..|..
T Consensus       464 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~  542 (606)
T 3t6q_A          464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL  542 (606)
T ss_dssp             GEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGG
T ss_pred             cccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhh
Confidence            2   22456677777777777777777777777788888888888888887777788888888 8888888888666543


Q ss_pred             -CCCCccCCCccCCCCCCCCCCC
Q 040815          207 -KQFATFDNTSFDGNSGLCGKPL  228 (305)
Q Consensus       207 -~~~~~l~~~~~~~n~~~c~~~~  228 (305)
                       ..+..+..+++.+||+.|+|+.
T Consensus       543 ~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          543 LPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             HHHHHTSSEEECTTCCEECSGGG
T ss_pred             cccCCCCCEEeCCCCCccccCCc
Confidence             3455677888999999998863

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.95  E-value=5.8e-27  Score=201.76  Aligned_cols=201  Identities=22%  Similarity=0.182  Sum_probs=168.9

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      +++++++|.++ .+|..+.  ++++.|++++|.+++..+..|..+++|++|+|++|.+++..+.    ..+++|+.|+++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~~L~~L~Ls   85 (290)
T 1p9a_G           13 LEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLPVLGTLDLS   85 (290)
T ss_dssp             CEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC----SCCTTCCEEECC
T ss_pred             cEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC----CCCCcCCEEECC
Confidence            47899999998 6776653  7999999999999988888999999999999999999876433    578999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG  160 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  160 (305)
                      +|.+. .+|.. +..                  ++.|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..|.
T Consensus        86 ~N~l~-~l~~~-~~~------------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  145 (290)
T 1p9a_G           86 HNQLQ-SLPLL-GQT------------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT  145 (290)
T ss_dssp             SSCCS-SCCCC-TTT------------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             CCcCC-cCchh-hcc------------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcc
Confidence            99998 77753 332                  45688888999999977778899999999999999999987777888


Q ss_pred             CCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCCCCCC
Q 040815          161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPL  228 (305)
Q Consensus       161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~  228 (305)
                      .+++|+.|+|++|+++...+..+..+++|++|++++|.++...+.......+..+.+.+||+.|+|..
T Consensus       146 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCcc
Confidence            99999999999999996666677889999999999999994433334455677888999999998853

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.2e-27  Score=205.58  Aligned_cols=223  Identities=17%  Similarity=0.165  Sum_probs=188.8

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCcc-CCcccCCCCCCCCCCCccEEEc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNI-FYGVIEEPRTGCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L   79 (305)
                      ++|+|++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|. ++...+..+  ..+++|++|++
T Consensus        35 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~--~~l~~L~~L~l  112 (285)
T 1ozn_A           35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF--HGLGRLHTLHL  112 (285)
T ss_dssp             SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT--TTCTTCCEEEC
T ss_pred             eEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh--cCCcCCCEEEC
Confidence            579999999998777889999999999999999998889999999999999999997 777766666  88999999999


Q ss_pred             cCCcCcccCChhhhhccchhhhhhhcccc------ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccc
Q 040815           80 SNNRFSGNLPSKSFLCWNAMKIVNARRMM------TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG  153 (305)
Q Consensus        80 ~~n~l~g~~p~~~~~~l~~L~~l~l~~~~------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  153 (305)
                      ++|.+. .++...|..+++|+.|+++.+.      .....++.|+.|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus       113 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          113 DRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            999999 6666679999999999988632      123447889999999999997666779999999999999999999


Q ss_pred             cCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCCCC
Q 040815          154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGK  226 (305)
Q Consensus       154 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~  226 (305)
                      ..|..|..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+....+..+.......+...|..
T Consensus       192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~  264 (285)
T 1ozn_A          192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL  264 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEE
T ss_pred             cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCC
Confidence            8899999999999999999999987778899999999999999999987664322233344444455554543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=4.5e-27  Score=214.68  Aligned_cols=107  Identities=19%  Similarity=0.210  Sum_probs=74.1

Q ss_pred             cccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEecc
Q 040815          116 ILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVS  195 (305)
Q Consensus       116 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~  195 (305)
                      .|+.|++++|.+++..|..+..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  355 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS  355 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence            35555555555555556667777777777777777777777777777777777777777776667777777778888888


Q ss_pred             CCcccCCCCCC-CCCCccCCCccCCCCC
Q 040815          196 DNYLTGPIPQG-KQFATFDNTSFDGNSG  222 (305)
Q Consensus       196 ~N~l~~~~p~~-~~~~~l~~~~~~~n~~  222 (305)
                      +|.+++..|.. ..++.+..+++.+|..
T Consensus       356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l  383 (455)
T 3v47_A          356 YNHIRALGDQSFLGLPNLKELALDTNQL  383 (455)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCcccccChhhccccccccEEECCCCcc
Confidence            88777665543 4455666666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=5.4e-27  Score=214.21  Aligned_cols=202  Identities=16%  Similarity=0.099  Sum_probs=181.8

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.|++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.++...+..+  ..+++|+.|+++
T Consensus       102 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~  179 (452)
T 3zyi_A          102 EVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLG  179 (452)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECC
T ss_pred             CEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCC
Confidence            579999999998888999999999999999999998777889999999999999999998766666  889999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccc----cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT----YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP  156 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~----~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  156 (305)
                      +|+..+.++...|..+++|+.|+++.+..    ....++.|+.|++++|.+++..|..|..+++|+.|+|++|++++..|
T Consensus       180 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  259 (452)
T 3zyi_A          180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER  259 (452)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT
T ss_pred             CCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH
Confidence            96655589988899999999999876321    22346789999999999998889999999999999999999999999


Q ss_pred             ccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCC
Q 040815          157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIP  204 (305)
Q Consensus       157 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  204 (305)
                      ..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.+.+.
T Consensus       260 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             HHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            999999999999999999998777888999999999999999987654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=5.9e-27  Score=213.25  Aligned_cols=202  Identities=18%  Similarity=0.122  Sum_probs=181.7

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++..+.+|.++++|++|+|++|++++..+..|..+++|++|+|++|.++...+..+  ..+++|+.|+++
T Consensus        91 ~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~  168 (440)
T 3zyj_A           91 EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLG  168 (440)
T ss_dssp             CEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECC
T ss_pred             CEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCC
Confidence            579999999998888999999999999999999998777789999999999999999998776666  889999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccc----cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT----YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP  156 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~----~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  156 (305)
                      +|+..+.++...|..+++|+.|+++.+..    ....++.|+.|++++|.+++..|..|..+++|+.|+|++|++++..+
T Consensus       169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  248 (440)
T 3zyj_A          169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER  248 (440)
T ss_dssp             CCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred             CCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh
Confidence            96655589988899999999999886321    22346789999999999998889999999999999999999999999


Q ss_pred             ccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCC
Q 040815          157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIP  204 (305)
Q Consensus       157 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  204 (305)
                      ..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.+.+.
T Consensus       249 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             hhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            999999999999999999998888888999999999999999987654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=8.7e-27  Score=204.43  Aligned_cols=195  Identities=22%  Similarity=0.231  Sum_probs=138.4

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++..+..|.++++|++|++++|.+++..|..|+.+++|++|++++|.++... ...    .++|++|+++
T Consensus        57 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~----~~~L~~L~l~  131 (332)
T 2ft3_A           57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP-PNL----PSSLVELRIH  131 (332)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCC-SSC----CTTCCEEECC
T ss_pred             eEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccC-ccc----cccCCEEECC
Confidence            57999999999777889999999999999999999888889999999999999999998543 222    2788888888


Q ss_pred             CCcCcccCChhhhhccchhhhhhhcccccc--------Cc--------------------ccccccEEEccCCccccccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTY--------NK--------------------IPDILAGIILSNNRFVGAIP  132 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~--------~~--------------------~~~~L~~L~ls~n~l~~~~p  132 (305)
                      +|.+. .+|...|..+++|+.|++..+...        ..                    ..+.|+.|++++|.+++..+
T Consensus       132 ~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~  210 (332)
T 2ft3_A          132 DNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIEL  210 (332)
T ss_dssp             SSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCT
T ss_pred             CCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCH
Confidence            88888 777777888888888877653210        00                    11345555666666655555


Q ss_pred             hhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCC
Q 040815          133 ASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGP  202 (305)
Q Consensus       133 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  202 (305)
                      ..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++.
T Consensus       211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~  279 (332)
T 2ft3_A          211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV  279 (332)
T ss_dssp             TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred             HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCcc
Confidence            55666666666666666666555555666666666666666666 5555566666666666666666543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=3.2e-26  Score=200.61  Aligned_cols=212  Identities=21%  Similarity=0.186  Sum_probs=163.2

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.++.. |...    .++|+.|+++
T Consensus        55 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~----~~~L~~L~l~  129 (330)
T 1xku_A           55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKM----PKTLQELRVH  129 (330)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CSSC----CTTCCEEECC
T ss_pred             eEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc-Chhh----cccccEEECC
Confidence            5799999999987777899999999999999999988899999999999999999999854 3222    3789999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccc--------cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT--------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQ  152 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~--------~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  152 (305)
                      +|.+. .++...|..+++|+.|++..+..        ....++.|+.|++++|.++ .+|..+.  ++|++|++++|.++
T Consensus       130 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~  205 (330)
T 1xku_A          130 ENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT  205 (330)
T ss_dssp             SSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCC
T ss_pred             CCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCC
Confidence            99998 77777788888888888775322        1233567888888888777 4554443  67788888888877


Q ss_pred             ccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC-CCCCCccCCCccCCCCC
Q 040815          153 GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSFDGNSG  222 (305)
Q Consensus       153 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~  222 (305)
                      +..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|. ...++.+..+.+.+|..
T Consensus       206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i  275 (330)
T 1xku_A          206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI  275 (330)
T ss_dssp             EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence            777777777788888888888877766667777778888888888777 4443 34455666666776654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.94  E-value=1.4e-26  Score=195.29  Aligned_cols=210  Identities=20%  Similarity=0.224  Sum_probs=169.3

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|++|+|++|.+++..+..+  ..+++|++|+++
T Consensus        17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~   91 (251)
T 3m19_A           17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF--DDLTELGTLGLA   91 (251)
T ss_dssp             TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECT
T ss_pred             eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh--ccCCcCCEEECC
Confidence            46899999999 6777664  799999999999999888899999999999999999998877666  889999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG  160 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  160 (305)
                      +|.++ .+|...|..                  ++.|+.|++++|.+++..+..|..+++|++|+|++|++++..+..|.
T Consensus        92 ~n~l~-~~~~~~~~~------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  152 (251)
T 3m19_A           92 NNQLA-SLPLGVFDH------------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD  152 (251)
T ss_dssp             TSCCC-CCCTTTTTT------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCccc-ccChhHhcc------------------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcC
Confidence            99999 777665554                  45678888999999977777789999999999999999987777899


Q ss_pred             CCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCc------cCCCccCCCCCCCCCCCCCCCCC
Q 040815          161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFAT------FDNTSFDGNSGLCGKPLSKGCES  234 (305)
Q Consensus       161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~------l~~~~~~~n~~~c~~~~~~~c~~  234 (305)
                      .+++|++|+|++|++++..+..+..+++|++|++++|++++.......+..      .......|+. .|+.+....|..
T Consensus       153 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~  231 (251)
T 3m19_A          153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSD  231 (251)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTT
T ss_pred             cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcc-cccCCCcCccCC
Confidence            999999999999999988888899999999999999999987443221111      1111223333 566666667766


Q ss_pred             C
Q 040815          235 G  235 (305)
Q Consensus       235 ~  235 (305)
                      +
T Consensus       232 ~  232 (251)
T 3m19_A          232 G  232 (251)
T ss_dssp             S
T ss_pred             C
Confidence            5

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=5.1e-27  Score=205.62  Aligned_cols=196  Identities=19%  Similarity=0.199  Sum_probs=177.0

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCC-------CCCCCC
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRT-------GCGFSK   73 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-------~~~l~~   73 (305)
                      ++|+|++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|++.+.+|..+.       +..+++
T Consensus       107 ~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~  184 (328)
T 4fcg_A          107 QHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN  184 (328)
T ss_dssp             SEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTT
T ss_pred             CEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCC
Confidence            58999999999 89999999999999999999998 7899999999999999999988887776651       134899


Q ss_pred             ccEEEccCCcCcccCChhhhhccchhhhhhhccccc-----cCcccccccEEEccCCccccccchhhhCCCCCCEEecCC
Q 040815           74 LRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMT-----YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQY  148 (305)
Q Consensus        74 L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~-----~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~  148 (305)
                      |++|++++|.++ .+|.. +..+++|+.|+++++..     ....++.|+.|++++|.+.+.+|..+..+++|+.|+|++
T Consensus       185 L~~L~L~~n~l~-~lp~~-l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~  262 (328)
T 4fcg_A          185 LQSLRLEWTGIR-SLPAS-IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD  262 (328)
T ss_dssp             CCEEEEEEECCC-CCCGG-GGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred             CCEEECcCCCcC-cchHh-hcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence            999999999999 99976 88999999999876321     123467899999999999999999999999999999999


Q ss_pred             ccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCccc
Q 040815          149 NNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT  200 (305)
Q Consensus       149 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  200 (305)
                      |.+.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|+.+++..|.+.
T Consensus       263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            9999999999999999999999999999999999999999999999988775

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=6.5e-27  Score=223.97  Aligned_cols=225  Identities=16%  Similarity=0.132  Sum_probs=180.8

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcC-hhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFP-SWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L   79 (305)
                      ++|+|++|++++..|.+|..+++|++|++++|.+++.+| ..|..+++|++|++++|.+++..+..+  ..+++|+.|++
T Consensus       384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~~L~~L~l  461 (680)
T 1ziw_A          384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF--ALVPSLQRLML  461 (680)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTT--TTCTTCCEEEC
T ss_pred             ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhh--hcCcccccchh
Confidence            467888888888888888889999999999998876555 678888999999999998887776666  67888999999


Q ss_pred             cCCcCc--ccCChhhhhccchhhhhhhcccc------ccCcccccccEEEccCCccccccc--------hhhhCCCCCCE
Q 040815           80 SNNRFS--GNLPSKSFLCWNAMKIVNARRMM------TYNKIPDILAGIILSNNRFVGAIP--------ASIANLKGLQV  143 (305)
Q Consensus        80 ~~n~l~--g~~p~~~~~~l~~L~~l~l~~~~------~~~~~~~~L~~L~ls~n~l~~~~p--------~~~~~l~~L~~  143 (305)
                      ++|.+.  +.+|. .|..+++|+.|+++++.      .....++.|+.|++++|.+++..+        ..+..+++|++
T Consensus       462 ~~n~l~~~~~~p~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~  540 (680)
T 1ziw_A          462 RRVALKNVDSSPS-PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI  540 (680)
T ss_dssp             TTSCCBCTTCSSC-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred             ccccccccccCCc-ccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence            888876  34554 47888888888887632      123446789999999999885422        23778899999


Q ss_pred             EecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCC--CCCccCCCccCCCC
Q 040815          144 LNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGK--QFATFDNTSFDGNS  221 (305)
Q Consensus       144 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~--~~~~l~~~~~~~n~  221 (305)
                      |+|++|+++...+..|.++++|++|+|++|++++..+..|..+++|+.|++++|.+++..|...  .+..+..+++.+||
T Consensus       541 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP  620 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred             EECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCC
Confidence            9999999995555678999999999999999997666778889999999999999997665431  45678888999999


Q ss_pred             CCCCCCC
Q 040815          222 GLCGKPL  228 (305)
Q Consensus       222 ~~c~~~~  228 (305)
                      +.|+|+.
T Consensus       621 ~~c~c~~  627 (680)
T 1ziw_A          621 FDCTCES  627 (680)
T ss_dssp             CCBCCCC
T ss_pred             cccCCcc
Confidence            9999974

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=6.9e-26  Score=193.06  Aligned_cols=184  Identities=18%  Similarity=0.205  Sum_probs=162.5

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++..+.+|.++++|++|++++|.++...+..|..+++|++|++++|.++...+..+  ..+++|+.|+++
T Consensus        40 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~  117 (270)
T 2o6q_A           40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVF--DQLVNLAELRLD  117 (270)
T ss_dssp             SEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTT--TTCSSCCEEECC
T ss_pred             CEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHc--ccccCCCEEECC
Confidence            579999999997777799999999999999999987767778899999999999999998776665  789999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG  160 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  160 (305)
                      +|.++ .++...|..                  ++.|+.|++++|.+++..+..|..+++|+.|+|++|.+++..+..|.
T Consensus       118 ~n~l~-~~~~~~~~~------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  178 (270)
T 2o6q_A          118 RNQLK-SLPPRVFDS------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD  178 (270)
T ss_dssp             SSCCC-CCCTTTTTT------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             CCccC-eeCHHHhCc------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhc
Confidence            99999 666655554                  45678888999999977677789999999999999999987777899


Q ss_pred             CCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC
Q 040815          161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ  205 (305)
Q Consensus       161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  205 (305)
                      .+++|++|++++|.+++..+..+..+++|+.|++++|++.+..+.
T Consensus       179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             cCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence            999999999999999977777788999999999999999987654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=6.1e-27  Score=221.25  Aligned_cols=221  Identities=16%  Similarity=0.101  Sum_probs=178.4

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcccCCC--cChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEc
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDT--FPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL   79 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L   79 (305)
                      +|++++|...+..  .+..+++|++|++++|.+++.  .|..+..+++|++|++++|.+++.. ..+  ..+++|+.|++
T Consensus       332 ~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~--~~l~~L~~L~l  406 (606)
T 3vq2_A          332 SLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANF--MGLEELQHLDF  406 (606)
T ss_dssp             EEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCC--TTCTTCCEEEC
T ss_pred             eeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhc--cCCCCCCeeEC
Confidence            4455555333222  455778888888888888765  3777888888999999888887643 333  77899999999


Q ss_pred             cCCcCcccCChhhhhccchhhhhhhccccc------cCcccccccEEEccCCcccc-ccchhhhCCCCCCEEecCCcccc
Q 040815           80 SNNRFSGNLPSKSFLCWNAMKIVNARRMMT------YNKIPDILAGIILSNNRFVG-AIPASIANLKGLQVLNLQYNNLQ  152 (305)
Q Consensus        80 ~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~------~~~~~~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~  152 (305)
                      ++|.+.+..|...+..+++|+.|+++.+..      ....++.|+.|++++|.+++ .+|..+..+++|++|++++|+++
T Consensus       407 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  486 (606)
T 3vq2_A          407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE  486 (606)
T ss_dssp             TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred             CCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC
Confidence            999998655546688899999998876322      23346889999999999997 47888999999999999999999


Q ss_pred             ccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCC-ccCCCccCCCCCCCCCCC
Q 040815          153 GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFA-TFDNTSFDGNSGLCGKPL  228 (305)
Q Consensus       153 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~-~l~~~~~~~n~~~c~~~~  228 (305)
                      +..|..+..+++|++|++++|++++.+|..+..+++|++|++++|+++ .+|.. ..++ .+..+++.+||+.|+|+.
T Consensus       487 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             ccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            999999999999999999999999988999999999999999999999 55553 3444 478888999999999875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=3.5e-26  Score=217.22  Aligned_cols=216  Identities=16%  Similarity=0.197  Sum_probs=177.9

Q ss_pred             CEEEccCCccccccchhccCCCC-CcEEeCCCcccCCCcChhccCCC--CCCEEEccCccCCcccCCCCCCC-------C
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSK-LEFLGLGNYQISDTFPSWLGTLP--KLNVLILRSNIFYGVIEEPRTGC-------G   70 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~-------~   70 (305)
                      ++|+|++|.++ .+|..+..+++ |++|++++|.++ .+|..+..+.  +|++|++++|.+++..|..+  .       .
T Consensus       356 ~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l--~~~~~~~~~  431 (636)
T 4eco_A          356 ASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF--DPLDPTPFK  431 (636)
T ss_dssp             SEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS--CTTCSSCCC
T ss_pred             CEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhh--ccccccccc
Confidence            46777777777 67777788887 888888888887 6777776544  78888888888887766655  4       6


Q ss_pred             CCCccEEEccCCcCcccCChhhhhccchhhhhhhcccccc------Cccc-------ccccEEEccCCccccccchhhh-
Q 040815           71 FSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTY------NKIP-------DILAGIILSNNRFVGAIPASIA-  136 (305)
Q Consensus        71 l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~------~~~~-------~~L~~L~ls~n~l~~~~p~~~~-  136 (305)
                      +++|+.|++++|.++ .+|...+..+++|+.|+++.+...      ....       +.|+.|++++|.++ .+|..+. 
T Consensus       432 ~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  509 (636)
T 4eco_A          432 GINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA  509 (636)
T ss_dssp             CCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST
T ss_pred             CCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh
Confidence            679999999999999 899888888999999998763221      1111       28999999999999 7888887 


Q ss_pred             -CCCCCCEEecCCccccccCCccccCCCCCCEEeC------CCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCC
Q 040815          137 -NLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDL------SNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQF  209 (305)
Q Consensus       137 -~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~  209 (305)
                       .+++|+.|+|++|++++ +|..+..+++|++|+|      ++|.+.+.+|..+..+++|++|++++|.+ +.+|... .
T Consensus       510 ~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~  586 (636)
T 4eco_A          510 TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-T  586 (636)
T ss_dssp             TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-C
T ss_pred             ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-h
Confidence             99999999999999997 8999999999999999      56888999999999999999999999999 5778753 3


Q ss_pred             CccCCCccCCCCCCCC
Q 040815          210 ATFDNTSFDGNSGLCG  225 (305)
Q Consensus       210 ~~l~~~~~~~n~~~c~  225 (305)
                      +.+..+++.+|+..|-
T Consensus       587 ~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          587 PNISVLDIKDNPNISI  602 (636)
T ss_dssp             TTCCEEECCSCTTCEE
T ss_pred             CcCCEEECcCCCCccc
Confidence            7888889999998774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=5.8e-26  Score=198.98  Aligned_cols=218  Identities=19%  Similarity=0.275  Sum_probs=183.0

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++..|..|.++++|++|++++|.++ .+|..+.  ++|++|++++|.+++..+..+  ..+++|+.|+++
T Consensus        79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~  153 (330)
T 1xku_A           79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVF--NGLNQMIVVELG  153 (330)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHH--TTCTTCCEEECC
T ss_pred             CEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHh--cCCccccEEECC
Confidence            58999999999888999999999999999999997 4665553  799999999999988765555  789999999999


Q ss_pred             CCcCcc-cCChhhhhccchhhhhhhcccccc---CcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC
Q 040815           81 NNRFSG-NLPSKSFLCWNAMKIVNARRMMTY---NKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP  156 (305)
Q Consensus        81 ~n~l~g-~~p~~~~~~l~~L~~l~l~~~~~~---~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  156 (305)
                      +|.+.. .+....+..+++|+.|++..+...   ....+.|+.|++++|.+++..|..+..+++|+.|++++|.+++..+
T Consensus       154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  233 (330)
T 1xku_A          154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN  233 (330)
T ss_dssp             SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT
T ss_pred             CCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh
Confidence            999962 244456889999999998763211   1234789999999999998888999999999999999999998888


Q ss_pred             ccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCC-------CCCccCCCccCCCCCCC
Q 040815          157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGK-------QFATFDNTSFDGNSGLC  224 (305)
Q Consensus       157 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-------~~~~l~~~~~~~n~~~c  224 (305)
                      ..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+...       ....+..+++.+||..+
T Consensus       234 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             TTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             hhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence            88999999999999999999 888899999999999999999996544321       12445667788888755

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.7e-27  Score=207.23  Aligned_cols=214  Identities=23%  Similarity=0.258  Sum_probs=162.2

Q ss_pred             EEEccCCccc-cccchhcc-------CCCCCcEEeCCCcccCCCcChhc--cCCCCCCEEEccCccCCcccCCCCCCCCC
Q 040815            2 EAKRSHNLFE-GRIPRSLI-------NCSKLEFLGLGNYQISDTFPSWL--GTLPKLNVLILRSNIFYGVIEEPRTGCGF   71 (305)
Q Consensus         2 ~L~Ls~n~l~-~~~~~~l~-------~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~l   71 (305)
                      +|+|++|.++ +.+|..+.       ++++|++|++++|.+++.+|..+  ..+++|++|+|++|.+++. |..+  ..+
T Consensus        67 ~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~--~~l  143 (312)
T 1wwl_A           67 SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWL--AEL  143 (312)
T ss_dssp             HCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHH--HHH
T ss_pred             hcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHH--HHH
Confidence            4667777773 45665554       67788888888888877777765  6778888888888887766 4333  333


Q ss_pred             -----CCccEEEccCCcCcccCChhhhhccchhhhhhhccccc----------cCcccccccEEEccCCcccc--ccc-h
Q 040815           72 -----SKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMT----------YNKIPDILAGIILSNNRFVG--AIP-A  133 (305)
Q Consensus        72 -----~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~----------~~~~~~~L~~L~ls~n~l~~--~~p-~  133 (305)
                           ++|++|++++|++. .++...|..+++|+.|+++++..          ....++.|++|++++|.+++  .++ .
T Consensus       144 ~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  222 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA  222 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCC-CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred             HHhhcCCCcEEEeeCCCCc-cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence                 77888888888887 55555577777888777776431          11446889999999999983  222 4


Q ss_pred             hhhCCCCCCEEecCCccccccCC-ccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCcc
Q 040815          134 SIANLKGLQVLNLQYNNLQGLIP-SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATF  212 (305)
Q Consensus       134 ~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l  212 (305)
                      .+..+++|+.|+|++|.+++.+| ..+..+++|++|+|++|.++ .+|..+.  ++|++||+++|++++. |....++.+
T Consensus       223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L  298 (312)
T 1wwl_A          223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQV  298 (312)
T ss_dssp             HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEE
T ss_pred             HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCC
Confidence            45688999999999999998775 45677899999999999999 7888776  8899999999999976 667778888


Q ss_pred             CCCccCCCCCC
Q 040815          213 DNTSFDGNSGL  223 (305)
Q Consensus       213 ~~~~~~~n~~~  223 (305)
                      ..+++.+|+..
T Consensus       299 ~~L~L~~N~l~  309 (312)
T 1wwl_A          299 GNLSLKGNPFL  309 (312)
T ss_dssp             EEEECTTCTTT
T ss_pred             CEEeccCCCCC
Confidence            88889999763

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=3.5e-27  Score=216.80  Aligned_cols=224  Identities=17%  Similarity=0.110  Sum_probs=160.6

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN   81 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~   81 (305)
                      +|+|++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+  ..+++|+.|++++
T Consensus       108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~  185 (477)
T 2id5_A          108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL--SHLHGLIVLRLRH  185 (477)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH--TTCTTCCEEEEES
T ss_pred             EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh--cccCCCcEEeCCC
Confidence            45555555555555555556666666666666555555556666666666666666655433333  5677777777777


Q ss_pred             CcCcccCChhhhhccchhhhhhhcc------------------------cc------ccCcccccccEEEccCCcccccc
Q 040815           82 NRFSGNLPSKSFLCWNAMKIVNARR------------------------MM------TYNKIPDILAGIILSNNRFVGAI  131 (305)
Q Consensus        82 n~l~g~~p~~~~~~l~~L~~l~l~~------------------------~~------~~~~~~~~L~~L~ls~n~l~~~~  131 (305)
                      |.+. .++...|..+++|+.|+++.                        +.      .....++.|+.|++++|.+++..
T Consensus       186 n~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  264 (477)
T 2id5_A          186 LNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE  264 (477)
T ss_dssp             CCCC-EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC
T ss_pred             CcCc-EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC
Confidence            7777 45555566666666655443                        11      11234678999999999999888


Q ss_pred             chhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCc
Q 040815          132 PASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFAT  211 (305)
Q Consensus       132 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~  211 (305)
                      +..|..+++|+.|+|++|++++..|..|..+++|++|+|++|.+++..+..|..+++|++|++++|++++.++....+..
T Consensus       265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~  344 (477)
T 2id5_A          265 GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRR  344 (477)
T ss_dssp             TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTT
T ss_pred             hhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhh
Confidence            88899999999999999999999999999999999999999999987778889999999999999999987653222223


Q ss_pred             cCCCccCCCCCCCCCCC
Q 040815          212 FDNTSFDGNSGLCGKPL  228 (305)
Q Consensus       212 l~~~~~~~n~~~c~~~~  228 (305)
                      .....+.++...|..|.
T Consensus       345 ~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          345 RWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             TTSSCCTTCCCBEEESG
T ss_pred             hhccccCccCceeCCch
Confidence            33455677777776553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=8.8e-27  Score=202.02  Aligned_cols=200  Identities=20%  Similarity=0.174  Sum_probs=173.5

Q ss_pred             CEEEccCCccccc--cchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccC-CCCCCCCCCCccEE
Q 040815            1 MEAKRSHNLFEGR--IPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIE-EPRTGCGFSKLRII   77 (305)
Q Consensus         1 ~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~L   77 (305)
                      ++|+|++|.++..  .+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+ ..+  ..+++|++|
T Consensus        55 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L  131 (306)
T 2z66_A           55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF--LSLRNLIYL  131 (306)
T ss_dssp             SEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTT--TTCTTCCEE
T ss_pred             CEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhh--hhccCCCEE
Confidence            5799999999833  4678888999999999999997 477779999999999999999987654 334  789999999


Q ss_pred             EccCCcCcccCChhhhhccchhhhhhhcccc-------ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcc
Q 040815           78 DLSNNRFSGNLPSKSFLCWNAMKIVNARRMM-------TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNN  150 (305)
Q Consensus        78 ~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~-------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~  150 (305)
                      ++++|.+. .++...+..+++|+.|++.++.       .....++.|+.|++++|.+++..|..+..+++|+.|+|++|.
T Consensus       132 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  210 (306)
T 2z66_A          132 DISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN  210 (306)
T ss_dssp             ECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             ECCCCcCC-ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence            99999998 4455568899999999987632       223446789999999999998889999999999999999999


Q ss_pred             ccccCCccccCCCCCCEEeCCCCcCCccCccccccCC-CCCEEeccCCcccCCCC
Q 040815          151 LQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELT-FLEFFNVSDNYLTGPIP  204 (305)
Q Consensus       151 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~p  204 (305)
                      +++..+..+..+++|++|++++|.+++..|..+..++ +|++|++++|++++..+
T Consensus       211 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            9987777899999999999999999999999999985 99999999999998654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=8.7e-27  Score=221.40  Aligned_cols=215  Identities=22%  Similarity=0.290  Sum_probs=179.7

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcc------------------------------------------------
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQ------------------------------------------------   33 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~------------------------------------------------   33 (305)
                      .|+|++|.++|.+|++++++++|++|+|++|.                                                
T Consensus        85 ~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~  164 (636)
T 4eco_A           85 GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD  164 (636)
T ss_dssp             EEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred             EEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHH
Confidence            68999999999999999999999999999884                                                


Q ss_pred             ------------------------------cCCCcChhccCCCCCCEEEccCccCCcc-----------------cCCCC
Q 040815           34 ------------------------------ISDTFPSWLGTLPKLNVLILRSNIFYGV-----------------IEEPR   66 (305)
Q Consensus        34 ------------------------------l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~~   66 (305)
                                                    +++ +|..|+++++|++|+|++|.+++.                 +|..+
T Consensus       165 l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l  243 (636)
T 4eco_A          165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL  243 (636)
T ss_dssp             HHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred             HhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh
Confidence                                          345 788899999999999999999984                 66666


Q ss_pred             CCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccC-----c---------ccccccEEEccCCccccccc
Q 040815           67 TGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYN-----K---------IPDILAGIILSNNRFVGAIP  132 (305)
Q Consensus        67 ~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~-----~---------~~~~L~~L~ls~n~l~~~~p  132 (305)
                      .+..+++|++|++++|.+.|.+|.. +..+++|+.|+++.+..+.     .         .++.|+.|++++|.++ .+|
T Consensus       244 ~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip  321 (636)
T 4eco_A          244 KWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFP  321 (636)
T ss_dssp             CGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCC
T ss_pred             hhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccC
Confidence            2228999999999999999899955 8899999999988765111     1         1278999999999999 888


Q ss_pred             h--hhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCC-CCEEeccCCcccCCCCCCCC-
Q 040815          133 A--SIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTF-LEFFNVSDNYLTGPIPQGKQ-  208 (305)
Q Consensus       133 ~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~l~~N~l~~~~p~~~~-  208 (305)
                      .  .++.+++|+.|++++|.++|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|.... 
T Consensus       322 ~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~  398 (636)
T 4eco_A          322 VETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDA  398 (636)
T ss_dssp             CHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCT
T ss_pred             chhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhh
Confidence            8  89999999999999999998888 8888999999999999998 88888888988 999999999998 6665422 


Q ss_pred             --CCccCCCccCCCCC
Q 040815          209 --FATFDNTSFDGNSG  222 (305)
Q Consensus       209 --~~~l~~~~~~~n~~  222 (305)
                        +..+..+++.+|..
T Consensus       399 ~~l~~L~~L~Ls~N~l  414 (636)
T 4eco_A          399 KSVSVMSAIDFSYNEI  414 (636)
T ss_dssp             TCSSCEEEEECCSSCT
T ss_pred             cccCccCEEECcCCcC
Confidence              22466666666654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.6e-26  Score=212.89  Aligned_cols=211  Identities=21%  Similarity=0.192  Sum_probs=173.6

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++..|..|..+++|++|+|++|.+++..|  |..+++|++|+|++|.+++..       ..++|+.|+++
T Consensus        37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-------~~~~L~~L~L~  107 (487)
T 3oja_A           37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-------VGPSIETLHAA  107 (487)
T ss_dssp             CEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-------ECTTCCEEECC
T ss_pred             cEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-------CCCCcCEEECc
Confidence            579999999998888899999999999999999987665  889999999999999998763       23789999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccc------cCcccccccEEEccCCccccccchhhh-CCCCCCEEecCCccccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT------YNKIPDILAGIILSNNRFVGAIPASIA-NLKGLQVLNLQYNNLQG  153 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~------~~~~~~~L~~L~ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~  153 (305)
                      +|.++ .++..   .+++|+.|+++++..      ....++.|+.|++++|.+++..|..+. .+++|+.|+|++|.+++
T Consensus       108 ~N~l~-~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          108 NNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             SSCCC-CEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCcCC-CCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            99998 44432   356788888776321      223467899999999999988888886 79999999999999997


Q ss_pred             cCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCCCCC
Q 040815          154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKP  227 (305)
Q Consensus       154 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~  227 (305)
                      . |. ...+++|++|+|++|.+++..| .+..+++|+.|++++|.+++..+....++.+..+++.+|++.|++.
T Consensus       184 ~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~  254 (487)
T 3oja_A          184 V-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL  254 (487)
T ss_dssp             E-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred             c-cc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcch
Confidence            6 33 4468999999999999996544 5889999999999999999754444566788888999999998653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=6.8e-26  Score=203.02  Aligned_cols=216  Identities=20%  Similarity=0.179  Sum_probs=155.3

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|++++|.++...+..+..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+  ..+++|++|+++
T Consensus        48 ~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~  125 (390)
T 3o6n_A           48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF--QNVPLLTVLVLE  125 (390)
T ss_dssp             SEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred             eEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh--cCCCCCCEEECC
Confidence            578999999996555568999999999999999998777899999999999999999998877766  889999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhcccc------ccCcccccccEEEccCCccccccchhhhCC----------------
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMM------TYNKIPDILAGIILSNNRFVGAIPASIANL----------------  138 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l----------------  138 (305)
                      +|.+. .+|...|..+++|+.|+++++.      .....++.|+.|++++|.+++.....+.++                
T Consensus       126 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~  204 (390)
T 3o6n_A          126 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP  204 (390)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred             CCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCC
Confidence            99999 8998888999999999988632      123346788899999888875422222211                


Q ss_pred             ---------------------CCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCC
Q 040815          139 ---------------------KGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDN  197 (305)
Q Consensus       139 ---------------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N  197 (305)
                                           ++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus       205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  282 (390)
T 3o6n_A          205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN  282 (390)
T ss_dssp             SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS
T ss_pred             CcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC
Confidence                                 1234444444444421  34555666666666666666666666666666666666666


Q ss_pred             cccCCCCCCCCCCccCCCccCCCC
Q 040815          198 YLTGPIPQGKQFATFDNTSFDGNS  221 (305)
Q Consensus       198 ~l~~~~p~~~~~~~l~~~~~~~n~  221 (305)
                      .+++..+....++.+..+++.+|.
T Consensus       283 ~l~~~~~~~~~l~~L~~L~L~~n~  306 (390)
T 3o6n_A          283 RLVALNLYGQPIPTLKVLDLSHNH  306 (390)
T ss_dssp             CCCEEECSSSCCTTCCEEECCSSC
T ss_pred             cCcccCcccCCCCCCCEEECCCCc
Confidence            666433322334555555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=9.7e-27  Score=202.45  Aligned_cols=194  Identities=25%  Similarity=0.293  Sum_probs=165.6

Q ss_pred             CEEEccCCccccccchhc--cCCCCCcEEeCCCcccCCCcChhccCC-----CCCCEEEccCccCCcccCCCCCCCCCCC
Q 040815            1 MEAKRSHNLFEGRIPRSL--INCSKLEFLGLGNYQISDTFPSWLGTL-----PKLNVLILRSNIFYGVIEEPRTGCGFSK   73 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~l~~   73 (305)
                      ++|+|++|++++.+|..+  ..+++|++|++++|++++. |..++.+     ++|++|+|++|.+++..+..+  ..+++
T Consensus        98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~--~~l~~  174 (312)
T 1wwl_A           98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV--RVFPA  174 (312)
T ss_dssp             CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC--CCCSS
T ss_pred             cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh--ccCCC
Confidence            589999999999999876  8999999999999999987 8888776     899999999999998877776  88999


Q ss_pred             ccEEEccCCcCcccC--Chh-hhhccchhhhhhhcccccc---------CcccccccEEEccCCccccccc-hhhhCCCC
Q 040815           74 LRIIDLSNNRFSGNL--PSK-SFLCWNAMKIVNARRMMTY---------NKIPDILAGIILSNNRFVGAIP-ASIANLKG  140 (305)
Q Consensus        74 L~~L~L~~n~l~g~~--p~~-~~~~l~~L~~l~l~~~~~~---------~~~~~~L~~L~ls~n~l~~~~p-~~~~~l~~  140 (305)
                      |++|++++|++.+.+  +.. .+..+++|+.|+++++.-.         ...++.|+.|++++|.+++..| ..+..+++
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  254 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ  254 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred             CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence            999999999987653  322 2378899999998874321         1234789999999999998775 45667899


Q ss_pred             CCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCC
Q 040815          141 LQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGP  202 (305)
Q Consensus       141 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  202 (305)
                      |++|+|++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|++++.
T Consensus       255 L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          255 LNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             CCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            999999999999 7787776  8999999999999965 66 88999999999999999853

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.9e-26  Score=199.93  Aligned_cols=210  Identities=21%  Similarity=0.194  Sum_probs=168.4

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++..|..|..+++|++|++++|.+++..+  +..+++|++|++++|.+++..       ..++|+.|+++
T Consensus        37 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-------~~~~L~~L~l~  107 (317)
T 3o53_A           37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-------VGPSIETLHAA  107 (317)
T ss_dssp             SEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-------ECTTCCEEECC
T ss_pred             CEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-------CCCCcCEEECC
Confidence            579999999998878899999999999999999986554  888999999999999988653       23788999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhcccc------ccCcccccccEEEccCCccccccchhh-hCCCCCCEEecCCccccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMM------TYNKIPDILAGIILSNNRFVGAIPASI-ANLKGLQVLNLQYNNLQG  153 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~------~~~~~~~~L~~L~ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~  153 (305)
                      +|.++ .++..   .+++|+.|+++.+.      .....++.|+.|++++|.+++..+..+ ..+++|++|+|++|.+++
T Consensus       108 ~n~l~-~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          108 NNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             SSCCS-EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCccC-CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence            99888 44433   35667777776532      122346789999999999998777776 478999999999999986


Q ss_pred             cCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCCCC
Q 040815          154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGK  226 (305)
Q Consensus       154 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~  226 (305)
                      . +. ...+++|++|++++|++++ +|..+..+++|++|++++|.+++..+....++.+..+++.+|++.|++
T Consensus       184 ~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~  253 (317)
T 3o53_A          184 V-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT  253 (317)
T ss_dssp             E-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred             c-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcC
Confidence            5 33 3458999999999999995 455588999999999999999954333456678888899999998764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=9.5e-25  Score=186.21  Aligned_cols=179  Identities=23%  Similarity=0.296  Sum_probs=120.0

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN   81 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~   81 (305)
                      +|++++|.++ .++ .+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+  ..+++|++|++++
T Consensus        45 ~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~  118 (272)
T 3rfs_A           45 QIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVF--DKLTNLKELVLVE  118 (272)
T ss_dssp             EEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECTT
T ss_pred             eeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHh--cCCcCCCEEECCC
Confidence            5666666665 232 456666777777777766542  356666677777777776666554444  5666677777777


Q ss_pred             CcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccC
Q 040815           82 NRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGN  161 (305)
Q Consensus        82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  161 (305)
                      |.++ .++...|..                  ++.|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..
T Consensus       119 n~l~-~~~~~~~~~------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  179 (272)
T 3rfs_A          119 NQLQ-SLPDGVFDK------------------LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK  179 (272)
T ss_dssp             SCCC-CCCTTTTTT------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CcCC-ccCHHHhcc------------------CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC
Confidence            7666 444443333                  345666677777777666666677777777777777777666666777


Q ss_pred             CCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC
Q 040815          162 LTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ  205 (305)
Q Consensus       162 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  205 (305)
                      +++|++|++++|.+++..+..+..+++|++|++++|++.|.+|.
T Consensus       180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence            77777777777777776666677777777777777777776664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.93  E-value=2.9e-25  Score=208.15  Aligned_cols=80  Identities=21%  Similarity=0.098  Sum_probs=58.4

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++..+.+|.++++|++|++++|++++..|+.|..+++|++|+|++|.++.+...     .+++|++|+++
T Consensus        55 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-----~l~~L~~L~Ls  129 (562)
T 3a79_B           55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-----PMASLRHLDLS  129 (562)
T ss_dssp             CEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-----CCTTCSEEECC
T ss_pred             CEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-----ccccCCEEECC
Confidence            4678888888876677888888888888888888777777788888888888888877644221     35566666666


Q ss_pred             CCcCc
Q 040815           81 NNRFS   85 (305)
Q Consensus        81 ~n~l~   85 (305)
                      +|.++
T Consensus       130 ~N~l~  134 (562)
T 3a79_B          130 FNDFD  134 (562)
T ss_dssp             SSCCS
T ss_pred             CCCcc
Confidence            66665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=1.3e-25  Score=218.18  Aligned_cols=215  Identities=18%  Similarity=0.204  Sum_probs=181.3

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeC-CCcccCCC-------------------------------------------
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGL-GNYQISDT-------------------------------------------   37 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~-------------------------------------------   37 (305)
                      .|+|++|.+.|.+|++++++++|++|+| ++|.++|.                                           
T Consensus       327 ~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~  406 (876)
T 4ecn_A          327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD  406 (876)
T ss_dssp             EEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred             EEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHH
Confidence            6899999999999999999999999999 77765443                                           


Q ss_pred             ---------------------------------cChhccCCCCCCEEEccCccCCc-----------------ccCCCCC
Q 040815           38 ---------------------------------FPSWLGTLPKLNVLILRSNIFYG-----------------VIEEPRT   67 (305)
Q Consensus        38 ---------------------------------~p~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~   67 (305)
                                                       +|..|+++++|++|+|++|.+++                 .+|..+.
T Consensus       407 ~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~  486 (876)
T 4ecn_A          407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS  486 (876)
T ss_dssp             HHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred             HhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh
Confidence                                             78889999999999999999998                 2666652


Q ss_pred             CCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccC---------------cccccccEEEccCCccccccc
Q 040815           68 GCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYN---------------KIPDILAGIILSNNRFVGAIP  132 (305)
Q Consensus        68 ~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~---------------~~~~~L~~L~ls~n~l~~~~p  132 (305)
                      +..+++|+.|+|++|.+.+.+|.. |..+++|+.|+++.+..+.               ..++.|+.|++++|.++ .+|
T Consensus       487 f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip  564 (876)
T 4ecn_A          487 WSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP  564 (876)
T ss_dssp             GGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC
T ss_pred             hccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccC
Confidence            238999999999999999999954 8999999999988764111               12348999999999999 888


Q ss_pred             h--hhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCC-CCEEeccCCcccCCCCCCCC-
Q 040815          133 A--SIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTF-LEFFNVSDNYLTGPIPQGKQ-  208 (305)
Q Consensus       133 ~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~l~~N~l~~~~p~~~~-  208 (305)
                      .  .++.+++|+.|+|++|.++ .+| .|+.+++|+.|+|++|.++ .+|..+..+++ |+.|++++|.++ .+|.... 
T Consensus       565 ~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~  640 (876)
T 4ecn_A          565 ASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA  640 (876)
T ss_dssp             CHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred             ChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhc
Confidence            8  8999999999999999999 788 8999999999999999999 89988999999 999999999998 6665422 


Q ss_pred             C--CccCCCccCCCCC
Q 040815          209 F--ATFDNTSFDGNSG  222 (305)
Q Consensus       209 ~--~~l~~~~~~~n~~  222 (305)
                      .  ..+..+.+.+|..
T Consensus       641 ~~~~~L~~L~Ls~N~l  656 (876)
T 4ecn_A          641 KSVYVMGSVDFSYNKI  656 (876)
T ss_dssp             TCSSCEEEEECCSSCT
T ss_pred             cccCCCCEEECcCCcC
Confidence            1  2255666666653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.93  E-value=3.8e-25  Score=208.98  Aligned_cols=218  Identities=19%  Similarity=0.212  Sum_probs=167.6

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++..|.+|.++++|++|++++|.+++..|..|+++++|++|+|++|.+++..|..+  ..+++|++|+++
T Consensus        36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~  113 (606)
T 3t6q_A           36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL--SGPKALKHLFFI  113 (606)
T ss_dssp             CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT--SSCTTCCEEECT
T ss_pred             cEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh--cccccccEeecc
Confidence            579999999998888999999999999999999998889999999999999999999998877776  889999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccc------cCcccccccEEEccCCccccccchhhhCCCCCC--EEecCCcccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQ--VLNLQYNNLQ  152 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~------~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~--~L~Ls~N~l~  152 (305)
                      +|.++ .++...+..+++|+.|+++.+..      ....+++|+.|++++|.+++..|..++.+++|+  .|++++|.++
T Consensus       114 ~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          114 QTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             TSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             ccCcc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            99998 66555588899999999876321      112267899999999999877788888888888  7788877776


Q ss_pred             ccCCcc--------------------------------------------------------------------------
Q 040815          153 GLIPSS--------------------------------------------------------------------------  158 (305)
Q Consensus       153 ~~~p~~--------------------------------------------------------------------------  158 (305)
                      +..|..                                                                          
T Consensus       193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~  272 (606)
T 3t6q_A          193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN  272 (606)
T ss_dssp             EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred             ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence            554433                                                                          


Q ss_pred             -ccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCC
Q 040815          159 -LGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSG  222 (305)
Q Consensus       159 -~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~  222 (305)
                       |..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|.. ..++.+..+.+.+|..
T Consensus       273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  337 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK  337 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred             HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence             445566666777776666 56666666667777777777666554422 3445555555666543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=4.2e-25  Score=208.47  Aligned_cols=218  Identities=20%  Similarity=0.189  Sum_probs=158.2

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      +.|++++|.++...+..|..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..+..+  +.+++|++|+|+
T Consensus        54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~  131 (597)
T 3oja_B           54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF--QNVPLLTVLVLE  131 (597)
T ss_dssp             SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred             eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH--cCCCCCCEEEee
Confidence            468999999997666678999999999999999998888899999999999999999999887776  889999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccc------cCcccccccEEEccCCccccccc----------------------
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT------YNKIPDILAGIILSNNRFVGAIP----------------------  132 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~------~~~~~~~L~~L~ls~n~l~~~~p----------------------  132 (305)
                      +|.++ .+|...|..+++|+.|+++++..      ....++.|+.|++++|.+++...                      
T Consensus       132 ~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~  210 (597)
T 3oja_B          132 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP  210 (597)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred             CCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCC
Confidence            99999 89988889999999999886321      22346778888888888775322                      


Q ss_pred             -------------------------------------hhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcC
Q 040815          133 -------------------------------------ASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF  175 (305)
Q Consensus       133 -------------------------------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  175 (305)
                                                           ..+..+++|+.|+|++|.+++.+|..|..+++|+.|+|++|.+
T Consensus       211 ~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  290 (597)
T 3oja_B          211 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL  290 (597)
T ss_dssp             TTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred             chhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence                                                 2244455566666666666655555666666666666666666


Q ss_pred             CccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCC
Q 040815          176 AGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSG  222 (305)
Q Consensus       176 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~  222 (305)
                      ++ +|..+..+++|+.|++++|.+++..+....++.+..+++.+|..
T Consensus       291 ~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l  336 (597)
T 3oja_B          291 VA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI  336 (597)
T ss_dssp             CE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred             CC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCC
Confidence            53 34445555666666666666653222223344455555555543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=9.9e-25  Score=208.85  Aligned_cols=202  Identities=18%  Similarity=0.167  Sum_probs=177.8

Q ss_pred             CEEEccCCccccccc-hhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCc--ccCCCCCCCCCCCccEE
Q 040815            1 MEAKRSHNLFEGRIP-RSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYG--VIEEPRTGCGFSKLRII   77 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~l~~L~~L   77 (305)
                      ++|+|++|.+++.+| ..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.++.  ..|..+  ..+++|+.|
T Consensus       408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L  485 (680)
T 1ziw_A          408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTIL  485 (680)
T ss_dssp             CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEE
T ss_pred             CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc--ccCCCCCEE
Confidence            579999999998776 689999999999999999998889999999999999999999874  444444  889999999


Q ss_pred             EccCCcCcccCChhhhhccchhhhhhhccccc--------------cCcccccccEEEccCCccccccchhhhCCCCCCE
Q 040815           78 DLSNNRFSGNLPSKSFLCWNAMKIVNARRMMT--------------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQV  143 (305)
Q Consensus        78 ~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~--------------~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~  143 (305)
                      ++++|+++ .+|+..|..+++|+.|+++++..              ....++.|+.|++++|.++...+..|..+++|+.
T Consensus       486 ~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~  564 (680)
T 1ziw_A          486 DLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI  564 (680)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence            99999999 78888899999999999886321              1345688999999999999554567999999999


Q ss_pred             EecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccc-cCCCCCEEeccCCcccCCCCC
Q 040815          144 LNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLV-ELTFLEFFNVSDNYLTGPIPQ  205 (305)
Q Consensus       144 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~l~~N~l~~~~p~  205 (305)
                      |+|++|++++..+..|..+++|++|++++|++++..+..+. .+++|+.+++++|++.|.++.
T Consensus       565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            99999999987777789999999999999999988888777 789999999999999998874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.92  E-value=3.1e-25  Score=192.71  Aligned_cols=199  Identities=24%  Similarity=0.213  Sum_probs=142.8

Q ss_pred             CEEEccCCccccccchhc--cCCCCCcEEeCCCcccCCCcC----hhccCCCCCCEEEccCccCCcccCCCCCCCCCCCc
Q 040815            1 MEAKRSHNLFEGRIPRSL--INCSKLEFLGLGNYQISDTFP----SWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKL   74 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L   74 (305)
                      ++|+|++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|+|++|.+++..+..+  ..+++|
T Consensus        94 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L  171 (310)
T 4glp_A           94 KELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV--RAFPAL  171 (310)
T ss_dssp             CEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC--CCCTTC
T ss_pred             eEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh--ccCCCC
Confidence            457777777777676666  677777777777777765444    234456777777777777766655555  667777


Q ss_pred             cEEEccCCcCccc--CChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccch----hhhCCCCCCEEecCC
Q 040815           75 RIIDLSNNRFSGN--LPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPA----SIANLKGLQVLNLQY  148 (305)
Q Consensus        75 ~~L~L~~n~l~g~--~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~----~~~~l~~L~~L~Ls~  148 (305)
                      ++|++++|++.+.  ++...                 ....++.|++|++++|.++ .++.    .+..+++|++|+|++
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~-----------------~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~  233 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAAL-----------------CPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSH  233 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTS-----------------CTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTT
T ss_pred             CEEECCCCCCccchhhhHHH-----------------hhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCC
Confidence            7777777776532  11110                 0112556788889999997 3343    357889999999999


Q ss_pred             ccccccCCccccCC---CCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCC
Q 040815          149 NNLQGLIPSSLGNL---TNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL  223 (305)
Q Consensus       149 N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~  223 (305)
                      |.+++..|..+..+   ++|++|+|++|+++ .+|..+.  ++|++||+++|++++. |....++.+..+.+.+|+..
T Consensus       234 N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          234 NSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             SCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred             CCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCC
Confidence            99998878777776   69999999999999 7777664  7899999999999963 44456778888888888763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.92  E-value=2.2e-25  Score=186.51  Aligned_cols=197  Identities=12%  Similarity=0.112  Sum_probs=148.5

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcc-cCCCcChhccCCCCCCEEEccC-ccCCcccCCCCCCCCCCCccEEE
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQ-ISDTFPSWLGTLPKLNVLILRS-NIFYGVIEEPRTGCGFSKLRIID   78 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~   78 (305)
                      ++|+|++|++++..+..|.++++|++|++++|. ++...+..|..+++|++|++++ |.++...+..+  ..+++|+.|+
T Consensus        34 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f--~~l~~L~~L~  111 (239)
T 2xwt_C           34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL--KELPLLKFLG  111 (239)
T ss_dssp             CEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE--ECCTTCCEEE
T ss_pred             cEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh--CCCCCCCEEe
Confidence            467888888886666677788888888888886 7655556777788888888887 77776655555  6777888888


Q ss_pred             ccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCC-ccccccchhhhCCCCCC-EEecCCccccccCC
Q 040815           79 LSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN-RFVGAIPASIANLKGLQ-VLNLQYNNLQGLIP  156 (305)
Q Consensus        79 L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p  156 (305)
                      +++|.++ .+|.  |..+++|               ..|+.|++++| .+++..+..|..+++|+ .|++++|.++...+
T Consensus       112 l~~n~l~-~lp~--~~~l~~L---------------~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~  173 (239)
T 2xwt_C          112 IFNTGLK-MFPD--LTKVYST---------------DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG  173 (239)
T ss_dssp             EEEECCC-SCCC--CTTCCBC---------------CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT
T ss_pred             CCCCCCc-cccc--ccccccc---------------ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH
Confidence            8888877 4664  4433322               11348999999 99877777799999999 99999999994444


Q ss_pred             ccccCCCCCCEEeCCCCc-CCccCccccccC-CCCCEEeccCCcccCCCCCCCCCCccCCCccCCC
Q 040815          157 SSLGNLTNLESLDLSNKK-FAGRIPQQLVEL-TFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGN  220 (305)
Q Consensus       157 ~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n  220 (305)
                      ..|.. ++|++|++++|+ +++..+..+..+ ++|++|++++|.+++ +|.. .+..+..+.+.++
T Consensus       174 ~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~-~~~~L~~L~l~~~  236 (239)
T 2xwt_C          174 YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK-GLEHLKELIARNT  236 (239)
T ss_dssp             TTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-TCTTCSEEECTTC
T ss_pred             hhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh-HhccCceeeccCc
Confidence            44544 899999999995 987667788889 999999999999984 4543 5666666666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=1.2e-25  Score=198.72  Aligned_cols=201  Identities=19%  Similarity=0.229  Sum_probs=167.3

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccC-CCCCCCCCCCccEEEc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIE-EPRTGCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~L~L   79 (305)
                      ++|+|++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.++.... ..+  ..+++|++|++
T Consensus        79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~--~~l~~L~~L~l  156 (353)
T 2z80_A           79 QALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF--SHLTKLQILRV  156 (353)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSC--TTCTTCCEEEE
T ss_pred             CEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhh--ccCCCCcEEEC
Confidence            579999999998888899999999999999999987666669999999999999999986544 344  78999999999


Q ss_pred             cCCc-CcccCChhhhhccchhhhhhhcccc------ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccc
Q 040815           80 SNNR-FSGNLPSKSFLCWNAMKIVNARRMM------TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQ  152 (305)
Q Consensus        80 ~~n~-l~g~~p~~~~~~l~~L~~l~l~~~~------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  152 (305)
                      ++|+ +. .++...|..+++|+.|+++.+.      .....++.|+.|++++|.+....+..+..+++|+.|++++|.++
T Consensus       157 ~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  235 (353)
T 2z80_A          157 GNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD  235 (353)
T ss_dssp             EESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred             CCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence            9995 55 7777779999999999987632      22334678999999999997443344556899999999999988


Q ss_pred             cc-------------------------------CCccccCCCCCCEEeCCCCcCCccCccc-cccCCCCCEEeccCCccc
Q 040815          153 GL-------------------------------IPSSLGNLTNLESLDLSNKKFAGRIPQQ-LVELTFLEFFNVSDNYLT  200 (305)
Q Consensus       153 ~~-------------------------------~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~l~~N~l~  200 (305)
                      +.                               +|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|+++
T Consensus       236 ~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             TCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence            64                               3445678899999999999999 56655 589999999999999999


Q ss_pred             CCCCC
Q 040815          201 GPIPQ  205 (305)
Q Consensus       201 ~~~p~  205 (305)
                      |.+|.
T Consensus       315 ~~~~~  319 (353)
T 2z80_A          315 CSCPR  319 (353)
T ss_dssp             CCHHH
T ss_pred             CcCCC
Confidence            88763

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=2.5e-24  Score=185.21  Aligned_cols=178  Identities=25%  Similarity=0.276  Sum_probs=155.8

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++..+..|..+++|++|++++|.+++..+.  +.+++|++|++++|.++.. |..+  ..+++|+.|+++
T Consensus        34 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~~l-~~~~--~~l~~L~~L~l~  108 (290)
T 1p9a_G           34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSL-PLLG--QTLPALTVLDVS  108 (290)
T ss_dssp             CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCSSC-CCCT--TTCTTCCEEECC
T ss_pred             CEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCCcC-chhh--ccCCCCCEEECC
Confidence            5799999999988889999999999999999999864432  7899999999999999854 4444  789999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG  160 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  160 (305)
                      +|+++ .+|...|..                  ++.|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..|.
T Consensus       109 ~N~l~-~l~~~~~~~------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~  169 (290)
T 1p9a_G          109 FNRLT-SLPLGALRG------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN  169 (290)
T ss_dssp             SSCCC-CCCSSTTTT------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred             CCcCc-ccCHHHHcC------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhc
Confidence            99999 777665655                  44578888999999977777889999999999999999977667788


Q ss_pred             CCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCC
Q 040815          161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPI  203 (305)
Q Consensus       161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  203 (305)
                      .+++|++|+|++|+++ .+|..+..++.|+.+++++|++.+..
T Consensus       170 ~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             TCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             CcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence            9999999999999999 78888888999999999999998764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=1.1e-24  Score=205.73  Aligned_cols=200  Identities=21%  Similarity=0.142  Sum_probs=176.9

Q ss_pred             CEEEccCCccccc--cchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccC-CCCCCCCCCCccEE
Q 040815            1 MEAKRSHNLFEGR--IPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIE-EPRTGCGFSKLRII   77 (305)
Q Consensus         1 ~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~L   77 (305)
                      ++|+|++|.+++.  .+..+..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+..+ ..+  ..+++|+.|
T Consensus       353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L  429 (606)
T 3vq2_A          353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF--LSLEKLLYL  429 (606)
T ss_dssp             CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT--TTCTTCCEE
T ss_pred             CEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh--hccccCCEE
Confidence            5799999999976  48899999999999999999975 67889999999999999999988766 344  789999999


Q ss_pred             EccCCcCcccCChhhhhccchhhhhhhccccc-------cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcc
Q 040815           78 DLSNNRFSGNLPSKSFLCWNAMKIVNARRMMT-------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNN  150 (305)
Q Consensus        78 ~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~-------~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~  150 (305)
                      ++++|.+.+..| ..+..+++|+.|+++++..       ....++.|+.|++++|.+++..|..+..+++|++|+|++|+
T Consensus       430 ~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  508 (606)
T 3vq2_A          430 DISYTNTKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN  508 (606)
T ss_dssp             ECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ECcCCCCCccch-hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence            999999995555 4589999999999876422       23446899999999999998889999999999999999999


Q ss_pred             ccccCCccccCCCCCCEEeCCCCcCCccCccccccCC-CCCEEeccCCcccCCCCC
Q 040815          151 LQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELT-FLEFFNVSDNYLTGPIPQ  205 (305)
Q Consensus       151 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~p~  205 (305)
                      +++.+|..+..+++|++|++++|+++ .+|..+..++ +|++|++++|++.+.++.
T Consensus       509 l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          509 LLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            99988999999999999999999999 7888898887 599999999999987764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=2.8e-24  Score=208.97  Aligned_cols=216  Identities=14%  Similarity=0.198  Sum_probs=148.6

Q ss_pred             EEEccCCccccccchhccCCCC-CcEEeCCCcccCCCcChhccCCC--CCCEEEccCccCCcccCCCC---CCCCCCCcc
Q 040815            2 EAKRSHNLFEGRIPRSLINCSK-LEFLGLGNYQISDTFPSWLGTLP--KLNVLILRSNIFYGVIEEPR---TGCGFSKLR   75 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~L~~n~l~~~~~~~~---~~~~l~~L~   75 (305)
                      +|+|++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..+.  +|+.|+|++|.+++.+|...   ....+++|+
T Consensus       599 ~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~  676 (876)
T 4ecn_A          599 DLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS  676 (876)
T ss_dssp             EEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred             EEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence            3455555554 44444555554 555555555554 3444444332  25555555555544333211   011334788


Q ss_pred             EEEccCCcCcccCChhhhhccchhhhhhhccccc------cCcc-------cccccEEEccCCccccccchhhh--CCCC
Q 040815           76 IIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMT------YNKI-------PDILAGIILSNNRFVGAIPASIA--NLKG  140 (305)
Q Consensus        76 ~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~------~~~~-------~~~L~~L~ls~n~l~~~~p~~~~--~l~~  140 (305)
                      .|++++|.+. .+|...+..+++|+.|+++.+..      ....       ++.|+.|++++|.++ .+|..+.  .+++
T Consensus       677 ~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~  754 (876)
T 4ecn_A          677 TVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPY  754 (876)
T ss_dssp             EEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTT
T ss_pred             EEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCC
Confidence            8888888888 78888777888888888876321      1111       127999999999998 7888886  8899


Q ss_pred             CCEEecCCccccccCCccccCCCCCCEEeCCC------CcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCC
Q 040815          141 LQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN------KKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN  214 (305)
Q Consensus       141 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~------N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~  214 (305)
                      |+.|+|++|.+++ +|..+..+++|+.|+|++      |.+.+.+|..+..+++|+.|++++|.+ +.+|... .+.+..
T Consensus       755 L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~  831 (876)
T 4ecn_A          755 LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL-TPQLYI  831 (876)
T ss_dssp             CCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CSSSCE
T ss_pred             cCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh-cCCCCE
Confidence            9999999999986 788888999999999976      778888999999999999999999999 6777752 357777


Q ss_pred             CccCCCCCCC
Q 040815          215 TSFDGNSGLC  224 (305)
Q Consensus       215 ~~~~~n~~~c  224 (305)
                      +++.+|+...
T Consensus       832 LdLs~N~l~~  841 (876)
T 4ecn_A          832 LDIADNPNIS  841 (876)
T ss_dssp             EECCSCTTCE
T ss_pred             EECCCCCCCc
Confidence            8888887543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=2.4e-24  Score=184.03  Aligned_cols=184  Identities=17%  Similarity=0.140  Sum_probs=158.2

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+  ..+++|++|+++
T Consensus        55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~  132 (276)
T 2z62_A           55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVA  132 (276)
T ss_dssp             SEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECC
T ss_pred             cEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhc--ccCCCCCEEECc
Confidence            589999999998778899999999999999999998888899999999999999999998766555  889999999999


Q ss_pred             CCcCcc-cCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCC----EEecCCccccccC
Q 040815           81 NNRFSG-NLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQ----VLNLQYNNLQGLI  155 (305)
Q Consensus        81 ~n~l~g-~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~  155 (305)
                      +|.+.+ .+|.. +..                  ++.|+.|++++|.+++..+..+..+++|+    .|++++|.+++..
T Consensus       133 ~n~l~~~~l~~~-~~~------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~  193 (276)
T 2z62_A          133 HNLIQSFKLPEY-FSN------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ  193 (276)
T ss_dssp             SSCCCCCCCCGG-GGG------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred             CCccceecCchh-hcc------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccC
Confidence            999983 24543 443                  45688888999999987777887777777    8999999999766


Q ss_pred             CccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC
Q 040815          156 PSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG  206 (305)
Q Consensus       156 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~  206 (305)
                      +..+. ..+|++|++++|.+++..+..+..+++|++|++++|++++.+|..
T Consensus       194 ~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          194 PGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             TTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             ccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence            66554 458999999999999777777889999999999999999988754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.92  E-value=5.2e-25  Score=204.42  Aligned_cols=216  Identities=18%  Similarity=0.153  Sum_probs=165.3

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++..|.+|.++++|++|++++|++++..|..|+.+++|++|+|++|.++.+...     .+++|++|+++
T Consensus        24 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-----~l~~L~~L~L~   98 (520)
T 2z7x_B           24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-----PTVNLKHLDLS   98 (520)
T ss_dssp             SEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-----CCCCCSEEECC
T ss_pred             cEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-----ccCCccEEecc
Confidence            5789999999977778899999999999999999888888999999999999999998854322     57889999999


Q ss_pred             CCcCcc-cCChhhhhccchhhhhhhcccccc---Ccc-------------------------------------------
Q 040815           81 NNRFSG-NLPSKSFLCWNAMKIVNARRMMTY---NKI-------------------------------------------  113 (305)
Q Consensus        81 ~n~l~g-~~p~~~~~~l~~L~~l~l~~~~~~---~~~-------------------------------------------  113 (305)
                      +|.+++ .+|. .|+.+++|+.|+++.+.-.   ...                                           
T Consensus        99 ~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~  177 (520)
T 2z7x_B           99 FNAFDALPICK-EFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE  177 (520)
T ss_dssp             SSCCSSCCCCG-GGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSC
T ss_pred             CCccccccchh-hhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcc
Confidence            998884 3554 4777777777766541100   000                                           


Q ss_pred             --------------------------------------------------------------------cccccEEEccCC
Q 040815          114 --------------------------------------------------------------------PDILAGIILSNN  125 (305)
Q Consensus       114 --------------------------------------------------------------------~~~L~~L~ls~n  125 (305)
                                                                                          .+.|+.|++++|
T Consensus       178 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n  257 (520)
T 2z7x_B          178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV  257 (520)
T ss_dssp             CCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred             hhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecc
Confidence                                                                                115677777777


Q ss_pred             ccccccchhh-----------------------------------------------------hCCCCCCEEecCCcccc
Q 040815          126 RFVGAIPASI-----------------------------------------------------ANLKGLQVLNLQYNNLQ  152 (305)
Q Consensus       126 ~l~~~~p~~~-----------------------------------------------------~~l~~L~~L~Ls~N~l~  152 (305)
                      .++|.+|..+                                                     ..+++|++|++++|.++
T Consensus       258 ~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~  337 (520)
T 2z7x_B          258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT  337 (520)
T ss_dssp             EEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCC
T ss_pred             cccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccC
Confidence            7776666544                                                     56678888888888888


Q ss_pred             ccCCccccCCCCCCEEeCCCCcCCc--cCccccccCCCCCEEeccCCcccCCCCCC--CCCCccCCCccCCCCC
Q 040815          153 GLIPSSLGNLTNLESLDLSNKKFAG--RIPQQLVELTFLEFFNVSDNYLTGPIPQG--KQFATFDNTSFDGNSG  222 (305)
Q Consensus       153 ~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~l~~~~~~~n~~  222 (305)
                      +.+|..+..+++|++|++++|++++  .+|..+..+++|++|++++|.+++.+|..  ..+..+..+.+.+|..
T Consensus       338 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l  411 (520)
T 2z7x_B          338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL  411 (520)
T ss_dssp             TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred             hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC
Confidence            8788888888999999999998886  56677888899999999999998756643  3456677777777754

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.92  E-value=1.8e-24  Score=189.72  Aligned_cols=213  Identities=18%  Similarity=0.178  Sum_probs=167.2

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++++++++.++ .+|..+  .++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+  ..+++|++|+++
T Consensus        36 ~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~  110 (332)
T 2ft3_A           36 RVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF--SPLRKLQKLYIS  110 (332)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS--TTCTTCCEEECC
T ss_pred             CEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh--hCcCCCCEEECC
Confidence            47899999998 677766  4799999999999988778899999999999999999998877666  889999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhcccc------ccCcccccccEEEccCCcccc--ccchhhhCC--------------
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMM------TYNKIPDILAGIILSNNRFVG--AIPASIANL--------------  138 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~------~~~~~~~~L~~L~ls~n~l~~--~~p~~~~~l--------------  138 (305)
                      +|.+. .+|...+   ++|+.|++..+.      .....++.|+.|++++|.++.  ..+..+..+              
T Consensus       111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS
T ss_pred             CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc
Confidence            99999 8887654   678888877532      123447789999999998853  455555444              


Q ss_pred             ------CCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC-CCCCCc
Q 040815          139 ------KGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFAT  211 (305)
Q Consensus       139 ------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~  211 (305)
                            ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|. ...++.
T Consensus       187 l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~  265 (332)
T 2ft3_A          187 IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL  265 (332)
T ss_dssp             CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred             cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence                  35666777777777666677888888888888888888777777888888888888888888 5554 345566


Q ss_pred             cCCCccCCCCCC
Q 040815          212 FDNTSFDGNSGL  223 (305)
Q Consensus       212 l~~~~~~~n~~~  223 (305)
                      +..+++.+|...
T Consensus       266 L~~L~l~~N~l~  277 (332)
T 2ft3_A          266 LQVVYLHTNNIT  277 (332)
T ss_dssp             CCEEECCSSCCC
T ss_pred             CCEEECCCCCCC
Confidence            777777777654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.92  E-value=9.2e-25  Score=204.72  Aligned_cols=221  Identities=21%  Similarity=0.236  Sum_probs=181.8

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|++++|.+. .+|.  ..+++|++|++++|.+.+..+.  ..+++|++|++++|.+++....+..+..+++|+.|+++
T Consensus       307 ~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~  381 (570)
T 2z63_A          307 QHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS  381 (570)
T ss_dssp             SEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECC
T ss_pred             cEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECC
Confidence            47899999988 6665  4688899999999888766554  67888999999999887653111222678889999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhcccc-------ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccc-
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMM-------TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQ-  152 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~-------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-  152 (305)
                      +|.+. .++.. +..+++|+.|++.++.       .....++.|+.|++++|.+.+..|..+..+++|++|++++|.++ 
T Consensus       382 ~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  459 (570)
T 2z63_A          382 FNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  459 (570)
T ss_dssp             SCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc
Confidence            99888 56655 7788888888877532       12344678999999999999889999999999999999999998 


Q ss_pred             ccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040815          153 GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL  228 (305)
Q Consensus       153 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~  228 (305)
                      +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..|.. ..++.+..+++.+|++.|+|+.
T Consensus       460 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            578899999999999999999999888999999999999999999999876653 5567788889999999999875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=3.1e-24  Score=183.02  Aligned_cols=197  Identities=21%  Similarity=0.225  Sum_probs=165.6

Q ss_pred             ccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcC
Q 040815            5 RSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRF   84 (305)
Q Consensus         5 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l   84 (305)
                      +..+.+....  .+..+++|+.|++++|.++. ++ .+..+++|++|++++|.+++..  .  +..+++|++|++++|.+
T Consensus        26 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~~--~--l~~l~~L~~L~L~~n~l   97 (272)
T 3rfs_A           26 LKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDIS--A--LKELTNLTYLILTGNQL   97 (272)
T ss_dssp             HTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCCG--G--GTTCTTCCEEECTTSCC
T ss_pred             hcCccccccc--ccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCch--h--hcCCCCCCEEECCCCcc
Confidence            4455554332  34578999999999999864 33 5788999999999999998752  3  37899999999999999


Q ss_pred             cccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCC
Q 040815           85 SGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTN  164 (305)
Q Consensus        85 ~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  164 (305)
                      + .++...|..                  ++.|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++
T Consensus        98 ~-~~~~~~~~~------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  158 (272)
T 3rfs_A           98 Q-SLPNGVFDK------------------LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN  158 (272)
T ss_dssp             C-CCCTTTTTT------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             C-ccChhHhcC------------------CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc
Confidence            9 666655554                  456788889999999877888999999999999999999887778899999


Q ss_pred             CCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040815          165 LESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL  228 (305)
Q Consensus       165 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~  228 (305)
                      |++|++++|++++..+..+..+++|++|++++|.+++..|.. ..+..+..+++.+|++.|.|+.
T Consensus       159 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence            999999999999888878899999999999999999877653 5677888899999999999873

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.92  E-value=3.1e-24  Score=210.07  Aligned_cols=108  Identities=20%  Similarity=0.257  Sum_probs=79.5

Q ss_pred             ccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEec
Q 040815          115 DILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNV  194 (305)
Q Consensus       115 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l  194 (305)
                      +.++.|++++|.+.+..+..+..+++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..|..+..+++|++|++
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  345 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL  345 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence            34566666666666556666777778888888888888777777888888888888888888777778888888888888


Q ss_pred             cCCcccCCCCCC-CCCCccCCCccCCCCC
Q 040815          195 SDNYLTGPIPQG-KQFATFDNTSFDGNSG  222 (305)
Q Consensus       195 ~~N~l~~~~p~~-~~~~~l~~~~~~~n~~  222 (305)
                      ++|.+++..+.. ..+..+..+++.+|..
T Consensus       346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l  374 (844)
T 3j0a_A          346 QKNHIAIIQDQTFKFLEKLQTLDLRDNAL  374 (844)
T ss_dssp             CSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred             CCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence            888887555432 3456677777777764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=1.2e-23  Score=177.30  Aligned_cols=157  Identities=20%  Similarity=0.227  Sum_probs=142.0

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+  ..+++|++|+|+
T Consensus        38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~  115 (251)
T 3m19_A           38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVF--DHLTQLDKLYLG  115 (251)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred             CEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHh--cccCCCCEEEcC
Confidence            579999999998888899999999999999999999888889999999999999999998876666  789999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG  160 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  160 (305)
                      +|.++ .+|...|..                  ++.|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..+.
T Consensus       116 ~N~l~-~~~~~~~~~------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  176 (251)
T 3m19_A          116 GNQLK-SLPSGVFDR------------------LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD  176 (251)
T ss_dssp             SSCCC-CCCTTTTTT------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             CCcCC-CcChhHhcc------------------CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHh
Confidence            99999 777665554                  45678888999999977777899999999999999999988888899


Q ss_pred             CCCCCCEEeCCCCcCCcc
Q 040815          161 NLTNLESLDLSNKKFAGR  178 (305)
Q Consensus       161 ~l~~L~~L~L~~N~l~~~  178 (305)
                      .+++|++|++++|.+++.
T Consensus       177 ~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          177 RLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TCTTCCEEECCSCCBCTT
T ss_pred             CCCCCCEEEeeCCceeCC
Confidence            999999999999999876

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.91  E-value=2.7e-24  Score=200.75  Aligned_cols=103  Identities=16%  Similarity=0.219  Sum_probs=60.8

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcc-cCCCCCCCCCCCccEEEc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGV-IEEPRTGCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~L   79 (305)
                      ++|+|++|++++..|.+|.++++|++|++++|.+++..|..|+.+++|++|++++|.+++. .+..+  ..+++|++|++
T Consensus        53 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~~l~~L~~L~L  130 (549)
T 2z81_A           53 QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF--PNLTNLQTLRI  130 (549)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSC--TTCTTCCEEEE
T ss_pred             cEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhh--hccCCccEEEC
Confidence            3566666666655556666666666666666666665555566666666666666666542 22222  55666666666


Q ss_pred             cCCcCcccCChhhhhccchhhhhhhc
Q 040815           80 SNNRFSGNLPSKSFLCWNAMKIVNAR  105 (305)
Q Consensus        80 ~~n~l~g~~p~~~~~~l~~L~~l~l~  105 (305)
                      ++|.+.+.+|...|..+++|+.|++.
T Consensus       131 ~~n~~~~~~~~~~~~~l~~L~~L~L~  156 (549)
T 2z81_A          131 GNVETFSEIRRIDFAGLTSLNELEIK  156 (549)
T ss_dssp             EESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             CCCccccccCHhhhhcccccCeeecc
Confidence            66654345554445555555555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=7.8e-24  Score=196.50  Aligned_cols=217  Identities=18%  Similarity=0.194  Sum_probs=162.9

Q ss_pred             CEEEccCCccccccchhc-----cCCCCCcEEeCCCcccCCCcC-hhccCC---CCCCEEEccCccCCcccCCCCCCCCC
Q 040815            1 MEAKRSHNLFEGRIPRSL-----INCSKLEFLGLGNYQISDTFP-SWLGTL---PKLNVLILRSNIFYGVIEEPRTGCGF   71 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~p-~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~l   71 (305)
                      ++|++++|.++|.+|..+     ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+....   + ...+
T Consensus       250 ~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~---~-~~~l  323 (520)
T 2z7x_B          250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML---C-PSKI  323 (520)
T ss_dssp             SEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC---C-CSSC
T ss_pred             cEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc---c-hhhC
Confidence            357777777777777776     6777777777777776  344 333333   45677777776654331   1 1457


Q ss_pred             CCccEEEccCCcCcccCChhhhhccchhhhhhhcccccc--------CcccccccEEEccCCccccccchh-hhCCCCCC
Q 040815           72 SKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTY--------NKIPDILAGIILSNNRFVGAIPAS-IANLKGLQ  142 (305)
Q Consensus        72 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~--------~~~~~~L~~L~ls~n~l~~~~p~~-~~~l~~L~  142 (305)
                      ++|++|++++|.+++.+|.. +..+++|+.|+++++...        ...++.|+.|++++|.+++.+|.. +..+++|+
T Consensus       324 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~  402 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL  402 (520)
T ss_dssp             CCCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred             CcccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence            78888888888887555543 677777887777653211        234678999999999999757654 78889999


Q ss_pred             EEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC--CCCCCccCCCccCCC
Q 040815          143 VLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ--GKQFATFDNTSFDGN  220 (305)
Q Consensus       143 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~--~~~~~~l~~~~~~~n  220 (305)
                      .|++++|.+++..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|++++ +|.  ...+..+..+++.+|
T Consensus       403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred             EEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCC
Confidence            999999999988877664  79999999999999 888888899999999999999994 554  345677888889999


Q ss_pred             CCCCCCCC
Q 040815          221 SGLCGKPL  228 (305)
Q Consensus       221 ~~~c~~~~  228 (305)
                      ++.|+|+.
T Consensus       479 ~~~c~c~~  486 (520)
T 2z7x_B          479 PWDCSCPR  486 (520)
T ss_dssp             CBCCCHHH
T ss_pred             CCcccCCc
Confidence            99999864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.90  E-value=6.9e-23  Score=167.62  Aligned_cols=175  Identities=17%  Similarity=0.204  Sum_probs=147.8

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      +.++.+++.++ .+|..+  .++|++|++++|++++..+..|..+++|++|++++|.+++..+..+  ..+++|++|+++
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls   84 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF--NKLTSLTYLNLS   84 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhc--CCCCCcCEEECC
Confidence            35788888888 566554  5699999999999998777788999999999999999997766555  789999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG  160 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  160 (305)
                      +|.++ .+|...|..                  ++.|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+.
T Consensus        85 ~n~l~-~~~~~~~~~------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  145 (208)
T 2o6s_A           85 TNQLQ-SLPNGVFDK------------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD  145 (208)
T ss_dssp             SSCCC-CCCTTTTTT------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             CCcCC-ccCHhHhcC------------------ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhc
Confidence            99999 777655554                  45678888999999977777789999999999999999977777789


Q ss_pred             CCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC
Q 040815          161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG  206 (305)
Q Consensus       161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~  206 (305)
                      .+++|++|++++|.+.+       .++.|++|+++.|.++|.+|..
T Consensus       146 ~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          146 RLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             TCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred             cCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeecc
Confidence            99999999999998764       3567899999999999999863

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=1.1e-22  Score=179.29  Aligned_cols=206  Identities=18%  Similarity=0.210  Sum_probs=117.8

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++ ++. +..+++|++|++++|......+ .+..+++|++|++++|.+....+    +..+++|+.|+++
T Consensus       113 ~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~  185 (347)
T 4fmz_A          113 RELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLN  185 (347)
T ss_dssp             SEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECT
T ss_pred             CEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEcc
Confidence            578889998884 443 7788888888888886544433 47778888888888887765543    2567778888888


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccc----cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT----YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP  156 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~----~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  156 (305)
                      +|.+. .++.  +..+++|+.+++..+..    ....++.|+.|++++|.+++..+  +..+++|++|++++|.+++.  
T Consensus       186 ~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--  258 (347)
T 4fmz_A          186 YNQIE-DISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--  258 (347)
T ss_dssp             TSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--
T ss_pred             CCccc-cccc--ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--
Confidence            77776 4543  55566666665544211    12234455556666655553222  45555555555555555532  


Q ss_pred             ccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCC
Q 040815          157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSG  222 (305)
Q Consensus       157 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~  222 (305)
                      ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..|.. ..++.+..+.+.+|+.
T Consensus       259 ~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  323 (347)
T 4fmz_A          259 NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI  323 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred             hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence            2344555555555555555432  23444555555555555554333321 2233444444444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=3e-24  Score=187.16  Aligned_cols=209  Identities=21%  Similarity=0.180  Sum_probs=170.4

Q ss_pred             EEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCC
Q 040815            3 AKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNN   82 (305)
Q Consensus         3 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n   82 (305)
                      ++++.+.+...+...+..+++|++|++++|.+++..|..|..+++|++|+|++|.+++..+  +  ..+++|++|++++|
T Consensus        15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~--~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L--ESLSTLRTLDLNNN   90 (317)
T ss_dssp             ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--E--TTCTTCCEEECCSS
T ss_pred             eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--h--hhcCCCCEEECcCC
Confidence            4566666665555666778899999999999998888899999999999999999987654  3  78999999999999


Q ss_pred             cCcccCChhhhhccchhhhhhhccccc---cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccc
Q 040815           83 RFSGNLPSKSFLCWNAMKIVNARRMMT---YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSL  159 (305)
Q Consensus        83 ~l~g~~p~~~~~~l~~L~~l~l~~~~~---~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  159 (305)
                      .++ .++     ..++|+.|+++.+..   ....++.|+.|++++|.+++..+..+..+++|+.|+|++|.+++..+..+
T Consensus        91 ~l~-~l~-----~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  164 (317)
T 3o53_A           91 YVQ-ELL-----VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL  164 (317)
T ss_dssp             EEE-EEE-----ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred             ccc-ccc-----CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence            998 444     237788888775321   12236789999999999998778889999999999999999998777776


Q ss_pred             -cCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCC
Q 040815          160 -GNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL  223 (305)
Q Consensus       160 -~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~  223 (305)
                       ..+++|++|++++|.+++. +. ...+++|++|++++|.+++..+....+..+..+++.+|...
T Consensus       165 ~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          165 AASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             GGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred             hhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc
Confidence             4789999999999999855 43 33589999999999999976665555677788888888654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=9.7e-23  Score=176.84  Aligned_cols=184  Identities=20%  Similarity=0.234  Sum_probs=140.3

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++..  .  +..+++|+.|+++
T Consensus        44 ~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~--~~~l~~L~~L~l~  115 (308)
T 1h6u_A           44 TTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--A--IAGLQSIKTLDLT  115 (308)
T ss_dssp             CEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--G--GTTCTTCCEEECT
T ss_pred             CEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--h--hcCCCCCCEEECC
Confidence            578999999984 55 68889999999999999976544  889999999999999998752  2  3788999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccc----cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT----YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP  156 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~----~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  156 (305)
                      +|.++ .++.  +..+++|+.|+++.+..    ....++.|+.|++++|.+++. +. +..+++|+.|++++|.+++..+
T Consensus       116 ~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          116 STQIT-DVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP  190 (308)
T ss_dssp             TSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred             CCCCC-Cchh--hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh
Confidence            99998 5654  77788888877765321    123456788888888887743 33 7777888888888888875433


Q ss_pred             ccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccC
Q 040815          157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTG  201 (305)
Q Consensus       157 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  201 (305)
                        +..+++|++|++++|++++..  .+..+++|++|++++|++++
T Consensus       191 --l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          191 --LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             --GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             --hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence              677788888888888887544  26777888888888888774

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=2.2e-23  Score=195.28  Aligned_cols=168  Identities=20%  Similarity=0.218  Sum_probs=127.4

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++..+.+|.++++|++|++++|.+++..|..|.++++|++|+|++|.++...+..+  ..+++|++|+++
T Consensus        31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~  108 (570)
T 2z63_A           31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAV  108 (570)
T ss_dssp             CEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEEECT
T ss_pred             cEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhh--cCcccccccccc
Confidence            578999999988778888999999999999999988777888889999999999999888776666  788899999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccc-------cCcccccccEEEccCCccccccchhhhCCCCC----CEEecCCc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT-------YNKIPDILAGIILSNNRFVGAIPASIANLKGL----QVLNLQYN  149 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~-------~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L----~~L~Ls~N  149 (305)
                      +|.++ .++...+..+++|+.|+++.+..       ....+++|+.|++++|.+++..+..+..+++|    +.|++++|
T Consensus       109 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          109 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             ccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            99888 67665588888888888776321       12235778888888888887777777777777    77888887


Q ss_pred             cccccCCccccCCCCCCEEeCCC
Q 040815          150 NLQGLIPSSLGNLTNLESLDLSN  172 (305)
Q Consensus       150 ~l~~~~p~~~~~l~~L~~L~L~~  172 (305)
                      .+++..|..+..+ +|+.|++++
T Consensus       188 ~l~~~~~~~~~~~-~L~~L~l~~  209 (570)
T 2z63_A          188 PMNFIQPGAFKEI-RLHKLTLRN  209 (570)
T ss_dssp             CCCEECTTTTTTC-EEEEEEEES
T ss_pred             CceecCHHHhccC-cceeEeccc
Confidence            7766555444332 344444333

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.89  E-value=2.9e-23  Score=194.52  Aligned_cols=200  Identities=20%  Similarity=0.227  Sum_probs=133.8

Q ss_pred             CEEEccCCccccccchhc-----cCCC--------------------------CCcEEeCCCcccCCCcChhccCCCCCC
Q 040815            1 MEAKRSHNLFEGRIPRSL-----INCS--------------------------KLEFLGLGNYQISDTFPSWLGTLPKLN   49 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l-----~~l~--------------------------~L~~L~L~~n~l~~~~p~~~~~l~~L~   49 (305)
                      ++|++++|.++|.+|..+     ..++                          +|++|++++|.+....  ....+++|+
T Consensus       279 ~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~  356 (562)
T 3a79_B          279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFT  356 (562)
T ss_dssp             EEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred             cEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCce
Confidence            468899999998888766     3333                          3566666666553211  125778899


Q ss_pred             EEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCCh--hhhhccchhhhhhhccccccCcccccccEEEccCCcc
Q 040815           50 VLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPS--KSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRF  127 (305)
Q Consensus        50 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~--~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l  127 (305)
                      +|++++|.+++..+..+  ..+++|+.|++++|+++ .++.  ..+..                  ++.|+.|++++|.+
T Consensus       357 ~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~-~~~~~~~~~~~------------------l~~L~~L~l~~N~l  415 (562)
T 3a79_B          357 FLNFTQNVFTDSVFQGC--STLKRLQTLILQRNGLK-NFFKVALMTKN------------------MSSLETLDVSLNSL  415 (562)
T ss_dssp             EEECCSSCCCTTTTTTC--CSCSSCCEEECCSSCCC-BTTHHHHTTTT------------------CTTCCEEECTTSCC
T ss_pred             EEECCCCccccchhhhh--cccCCCCEEECCCCCcC-CcccchhhhcC------------------CCCCCEEECCCCcC
Confidence            99999998888766666  78889999999999888 5543  22333                  34566666777777


Q ss_pred             ccccch-hhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC-
Q 040815          128 VGAIPA-SIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ-  205 (305)
Q Consensus       128 ~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-  205 (305)
                      ++.+|. .+..+++|+.|++++|.+++.+|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|++++ +|. 
T Consensus       416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~  491 (562)
T 3a79_B          416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDG  491 (562)
T ss_dssp             BSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTT
T ss_pred             CCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHH
Confidence            763443 356667777777777777666555443  56777777777776 566656677777777777777773 443 


Q ss_pred             -CCCCCccCCCccCCCCCCCCCC
Q 040815          206 -GKQFATFDNTSFDGNSGLCGKP  227 (305)
Q Consensus       206 -~~~~~~l~~~~~~~n~~~c~~~  227 (305)
                       ...++.+..+++.+|++.|+|+
T Consensus       492 ~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          492 VFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             STTTCTTCCCEECCSCCBCCCHH
T ss_pred             HHhcCCCCCEEEecCCCcCCCcc
Confidence             2445556666677777777664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=9.2e-24  Score=194.42  Aligned_cols=198  Identities=22%  Similarity=0.203  Sum_probs=165.5

Q ss_pred             cchhccCCC----CCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCC
Q 040815           14 IPRSLINCS----KLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLP   89 (305)
Q Consensus        14 ~~~~l~~l~----~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p   89 (305)
                      +|..+..+.    +|++|+|++|.+++..|..|..+++|++|+|++|.+++..+  +  ..+++|++|+|++|.++ .+|
T Consensus        22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l--~~l~~L~~L~Ls~N~l~-~l~   96 (487)
T 3oja_A           22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L--ESLSTLRTLDLNNNYVQ-ELL   96 (487)
T ss_dssp             HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--C--TTCTTCCEEECCSSEEE-EEE
T ss_pred             hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--c--ccCCCCCEEEecCCcCC-CCC
Confidence            455555554    89999999999999888999999999999999999988765  3  78999999999999998 554


Q ss_pred             hhhhhccchhhhhhhcccccc---CcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc-CCCCC
Q 040815           90 SKSFLCWNAMKIVNARRMMTY---NKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG-NLTNL  165 (305)
Q Consensus        90 ~~~~~~l~~L~~l~l~~~~~~---~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L  165 (305)
                      .     .++|+.|+++++...   ...++.|+.|++++|.+++..|..++.+++|+.|+|++|.+++.+|..+. .+++|
T Consensus        97 ~-----~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L  171 (487)
T 3oja_A           97 V-----GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL  171 (487)
T ss_dssp             E-----CTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred             C-----CCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence            3     377888887763221   12357899999999999988898999999999999999999998888876 79999


Q ss_pred             CEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCC
Q 040815          166 ESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL  223 (305)
Q Consensus       166 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~  223 (305)
                      ++|+|++|.+++. |. ...+++|++|++++|.+++..|....+..+..+++.+|...
T Consensus       172 ~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          172 EHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV  227 (487)
T ss_dssp             CEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred             cEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc
Confidence            9999999999966 33 34589999999999999987776566677888888888653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.89  E-value=1.1e-22  Score=180.42  Aligned_cols=179  Identities=25%  Similarity=0.255  Sum_probs=136.4

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhcc-CCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLG-TLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L   79 (305)
                      +++++++|.++ .+|..+.  ..++.|+|++|+|++..+..|. .+++|++|+|++|.|+++.+..+  ..+++|+.|+|
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~--~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF--VPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEEC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc--cCCCCCCEEEC
Confidence            36788888888 5676553  5688888888888877777776 88888888888888887766666  77888888888


Q ss_pred             cCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccc
Q 040815           80 SNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSL  159 (305)
Q Consensus        80 ~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  159 (305)
                      ++|++. .++...|..                  ++.|+.|+|++|.+++..|..|..+++|+.|+|++|.+++..+..|
T Consensus        96 s~N~l~-~~~~~~~~~------------------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~  156 (361)
T 2xot_A           96 SSNHLH-TLDEFLFSD------------------LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI  156 (361)
T ss_dssp             CSSCCC-EECTTTTTT------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred             CCCcCC-cCCHHHhCC------------------CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh
Confidence            888888 666555554                  3456777788888887778888888888888888888885544444


Q ss_pred             ---cCCCCCCEEeCCCCcCCccCccccccCCC--CCEEeccCCcccCCC
Q 040815          160 ---GNLTNLESLDLSNKKFAGRIPQQLVELTF--LEFFNVSDNYLTGPI  203 (305)
Q Consensus       160 ---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~l~~N~l~~~~  203 (305)
                         ..+++|+.|+|++|++++..+..+..++.  ++.|++++|++.+..
T Consensus       157 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             C----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred             cCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence               56888888888888888666667777776  377888888887643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.89  E-value=6.8e-23  Score=169.21  Aligned_cols=156  Identities=20%  Similarity=0.231  Sum_probs=121.3

Q ss_pred             cEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCC-CCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhh
Q 040815           25 EFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEE-PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVN  103 (305)
Q Consensus        25 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~  103 (305)
                      +.+++++|.++. +|..+  ...+++|+|++|.+++..+. .+  ..+++|+.|+|++|.++ .++...|..        
T Consensus        14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~--~~l~~L~~L~L~~N~i~-~i~~~~~~~--------   79 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIF--KKLPQLRKINFSNNKIT-DIEEGAFEG--------   79 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCG--GGCTTCCEEECCSSCCC-EECTTTTTT--------
T ss_pred             CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhh--ccCCCCCEEECCCCcCC-EECHHHhCC--------
Confidence            467777777753 56544  23567788888877766432 23  66778888888888877 555444544        


Q ss_pred             hccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCcccc
Q 040815          104 ARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQL  183 (305)
Q Consensus       104 l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  183 (305)
                                ++.|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..+
T Consensus        80 ----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  149 (220)
T 2v70_A           80 ----------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF  149 (220)
T ss_dssp             ----------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred             ----------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence                      3456677788888887777778889999999999999998888889999999999999999998888899


Q ss_pred             ccCCCCCEEeccCCcccCCCC
Q 040815          184 VELTFLEFFNVSDNYLTGPIP  204 (305)
Q Consensus       184 ~~l~~L~~L~l~~N~l~~~~p  204 (305)
                      ..+++|+.|++++|++++.++
T Consensus       150 ~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          150 DTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TTCTTCCEEECCSCCEECSGG
T ss_pred             cCCCCCCEEEecCcCCcCCCc
Confidence            999999999999999988765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.89  E-value=7.5e-22  Score=180.22  Aligned_cols=180  Identities=22%  Similarity=0.200  Sum_probs=116.3

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++ +| .+..+++|++|++++|++++. |  ++.+++|++|++++|.+++.   ++  ..+++|++|+++
T Consensus        45 ~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~---~~--~~l~~L~~L~L~  114 (457)
T 3bz5_A           45 TSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL---DV--TPLTKLTYLNCD  114 (457)
T ss_dssp             CEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC---CC--TTCTTCCEEECC
T ss_pred             CEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee---ec--CCCCcCCEEECC
Confidence            467777777775 34 567777777777777777653 3  66677777777777776654   12  556666666666


Q ss_pred             CCcCcccCChhhhhccchhhhhhhcc---------------------cccc----CcccccccEEEccCCccccccchhh
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARR---------------------MMTY----NKIPDILAGIILSNNRFVGAIPASI  135 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~---------------------~~~~----~~~~~~L~~L~ls~n~l~~~~p~~~  135 (305)
                      +|.++ .+|   +..+++|+.|+++.                     +...    ...++.|+.|++++|.+++ +|  +
T Consensus       115 ~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l  187 (457)
T 3bz5_A          115 TNKLT-KLD---VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--V  187 (457)
T ss_dssp             SSCCS-CCC---CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--C
T ss_pred             CCcCC-eec---CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--c
Confidence            66666 343   45555555555443                     2111    1224566777777777764 34  5


Q ss_pred             hCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCC
Q 040815          136 ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPI  203 (305)
Q Consensus       136 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  203 (305)
                      ..+++|+.|++++|.+++.   .++.+++|++|++++|++++ +|  +..+++|++|++++|.+++..
T Consensus       188 ~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          188 SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence            6677777777777777754   26677778888888887775 45  667777888888888887653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=3.7e-23  Score=179.65  Aligned_cols=177  Identities=18%  Similarity=0.171  Sum_probs=145.5

Q ss_pred             CEEEccCCccccccc----hhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcc--cCCCCCCCCCCCc
Q 040815            1 MEAKRSHNLFEGRIP----RSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGV--IEEPRTGCGFSKL   74 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L   74 (305)
                      ++|+|++|.+++..+    ..+..+++|++|++++|.+++..+..|+.+++|++|+|++|.+.+.  .+....+..+++|
T Consensus       120 ~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L  199 (310)
T 4glp_A          120 SSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAI  199 (310)
T ss_dssp             SSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCC
T ss_pred             CEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCC
Confidence            468999999997655    4556899999999999999988889999999999999999998653  2222223678999


Q ss_pred             cEEEccCCcCcccCChh---hhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCC---CCCCEEecCC
Q 040815           75 RIIDLSNNRFSGNLPSK---SFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANL---KGLQVLNLQY  148 (305)
Q Consensus        75 ~~L~L~~n~l~g~~p~~---~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l---~~L~~L~Ls~  148 (305)
                      ++|++++|+++ .++..   .+..                  ++.|++|++++|.+++..|..+..+   ++|++|+|++
T Consensus       200 ~~L~Ls~N~l~-~l~~~~~~l~~~------------------l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~  260 (310)
T 4glp_A          200 QNLALRNTGME-TPTGVCAALAAA------------------GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF  260 (310)
T ss_dssp             CSCBCCSSCCC-CHHHHHHHHHHH------------------TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred             CEEECCCCCCC-chHHHHHHHHhc------------------CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence            99999999997 54432   1222                  4568888999999998878887777   6999999999


Q ss_pred             ccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccC
Q 040815          149 NNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTG  201 (305)
Q Consensus       149 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  201 (305)
                      |+++ .+|..+.  ++|++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus       261 N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          261 AGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            9999 6777664  8999999999999963 43 6788999999999999974

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.88  E-value=5.8e-23  Score=191.76  Aligned_cols=193  Identities=21%  Similarity=0.215  Sum_probs=137.2

Q ss_pred             EEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCC
Q 040815            3 AKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNN   82 (305)
Q Consensus         3 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n   82 (305)
                      .|.++|.++ .+|..+.  ++|++|++++|.+++..|..|..+++|++|+|++|.+++..+..+  ..+++|++|++++|
T Consensus        10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n   84 (549)
T 2z81_A           10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAF--YSLGSLEHLDLSDN   84 (549)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTS
T ss_pred             EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhc--cccccCCEEECCCC
Confidence            456667776 5665543  677777777777776667777777777777777777777665555  67777777777777


Q ss_pred             cCcccCChhhhhccchhhhhhhccccc-------cCcccccccEEEccCCccccccc-hhhhCCCCCCEEecCCcccccc
Q 040815           83 RFSGNLPSKSFLCWNAMKIVNARRMMT-------YNKIPDILAGIILSNNRFVGAIP-ASIANLKGLQVLNLQYNNLQGL  154 (305)
Q Consensus        83 ~l~g~~p~~~~~~l~~L~~l~l~~~~~-------~~~~~~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~  154 (305)
                      .++ .+++..|..+++|+.|+++++..       ....++.|+.|++++|.+.+.+| ..+..+++|++|++++|.+++.
T Consensus        85 ~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  163 (549)
T 2z81_A           85 HLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY  163 (549)
T ss_dssp             CCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             ccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence            777 56666677777777777765321       12335678888888887444554 5678888888888888888877


Q ss_pred             CCccccCCCCCCEEeCCCCcCCccCccc-cccCCCCCEEeccCCcccCC
Q 040815          155 IPSSLGNLTNLESLDLSNKKFAGRIPQQ-LVELTFLEFFNVSDNYLTGP  202 (305)
Q Consensus       155 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~l~~N~l~~~  202 (305)
                      .|..+..+++|++|++++|.+. .+|.. +..+++|++|++++|.+++.
T Consensus       164 ~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          164 QSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             CTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             ChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccc
Confidence            8888888888888888888776 34443 34577888888888888763

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.88  E-value=4.1e-22  Score=182.55  Aligned_cols=206  Identities=25%  Similarity=0.306  Sum_probs=152.9

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|++++|.+++. + .+..+++|++|++++|.+++..|  ++.+++|++|++++|.+++..  .  +..+++|+.|+++
T Consensus       180 ~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~--l~~l~~L~~L~l~  251 (466)
T 1o6v_A          180 ERLDISSNKVSDI-S-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--T--LASLTNLTDLDLA  251 (466)
T ss_dssp             CEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--G--GGGCTTCSEEECC
T ss_pred             CEEECcCCcCCCC-h-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch--h--hhcCCCCCEEECC
Confidence            4678888887743 3 47778888888888888876555  666788888888888877542  2  2667888888888


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccc----cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT----YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP  156 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~----~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  156 (305)
                      +|.+. .++.  +..+++|+.|+++.+..    ....++.|+.|++++|.+++..+  +..+++|+.|++++|++++..|
T Consensus       252 ~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~  326 (466)
T 1o6v_A          252 NNQIS-NLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP  326 (466)
T ss_dssp             SSCCC-CCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred             CCccc-cchh--hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence            88887 4443  67778888887765321    12346778888888888885444  7788888888888888886655


Q ss_pred             ccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCC
Q 040815          157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLC  224 (305)
Q Consensus       157 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c  224 (305)
                        +..+++|++|++++|.+++.  ..+..+++|+.|++++|++++..| ...++.+..+.+.+|++..
T Consensus       327 --~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          327 --VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             --GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred             --hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence              67888888999988888854  467788889999999999887776 5566777777777776654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=1.4e-21  Score=178.41  Aligned_cols=203  Identities=15%  Similarity=0.091  Sum_probs=134.1

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCC--------------
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPR--------------   66 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~--------------   66 (305)
                      ++|+|++|.+++. |  ++.+++|++|++++|.+++. +  ++.+++|++|++++|.+++.   ++              
T Consensus        67 ~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l---~~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A           67 TKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARN  137 (457)
T ss_dssp             SEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCCEEECTTS
T ss_pred             CEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee---cCCCCCcCCEEECCCC
Confidence            3455666655542 2  55555555555555555442 2  44555555555555555442   11              


Q ss_pred             -----CCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccc---cCcccccccEEEccCCccccccchhhhCC
Q 040815           67 -----TGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMT---YNKIPDILAGIILSNNRFVGAIPASIANL  138 (305)
Q Consensus        67 -----~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~---~~~~~~~L~~L~ls~n~l~~~~p~~~~~l  138 (305)
                           .++.+++|+.|++++|...+.++   +..+++|+.|+++.+..   ....++.|+.|++++|.+++.   .+..+
T Consensus       138 ~l~~l~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~---~l~~l  211 (457)
T 3bz5_A          138 TLTEIDVSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL---DLNQN  211 (457)
T ss_dssp             CCSCCCCTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC---CCTTC
T ss_pred             ccceeccccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee---ccccC
Confidence                 01344555555555554333442   56677788887765321   133467899999999999965   38899


Q ss_pred             CCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCC-------CCCEEeccCCcccCCCCCCCCCCc
Q 040815          139 KGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELT-------FLEFFNVSDNYLTGPIPQGKQFAT  211 (305)
Q Consensus       139 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-------~L~~L~l~~N~l~~~~p~~~~~~~  211 (305)
                      ++|+.|++++|++++ +|  +..+++|++|++++|++++..+..+..+.       +|+.+++++|.+.+.+|. ..+..
T Consensus       212 ~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~-~~l~~  287 (457)
T 3bz5_A          212 IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA-EGCRK  287 (457)
T ss_dssp             TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC-TTCTT
T ss_pred             CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccc-ccccc
Confidence            999999999999997 56  88999999999999999987655554443       556777777777777764 35677


Q ss_pred             cCCCccCCCCC
Q 040815          212 FDNTSFDGNSG  222 (305)
Q Consensus       212 l~~~~~~~n~~  222 (305)
                      +..+++.+|+.
T Consensus       288 L~~L~Ls~n~~  298 (457)
T 3bz5_A          288 IKELDVTHNTQ  298 (457)
T ss_dssp             CCCCCCTTCTT
T ss_pred             CCEEECCCCcc
Confidence            88888888874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.88  E-value=5e-22  Score=174.94  Aligned_cols=207  Identities=19%  Similarity=0.233  Sum_probs=173.1

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+    +..+++|+.|+++
T Consensus       135 ~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~  207 (347)
T 4fmz_A          135 YSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAY  207 (347)
T ss_dssp             CEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECC
T ss_pred             eEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc----ccCCCccceeecc
Confidence            579999997664554 48999999999999999976544  7889999999999999987643    3778999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccc----cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT----YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP  156 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~----~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  156 (305)
                      +|.+. .++.  +..+++|+.|++.++..    ....++.|+.|++++|.+++ + ..+..+++|+.|++++|.+++.  
T Consensus       208 ~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--  280 (347)
T 4fmz_A          208 VNQIT-DITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--  280 (347)
T ss_dssp             SSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--
T ss_pred             cCCCC-CCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--
Confidence            99998 5554  78889999998876321    13457889999999999985 3 4688999999999999999964  


Q ss_pred             ccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCC
Q 040815          157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSG  222 (305)
Q Consensus       157 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~  222 (305)
                      ..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..| ...++.+..+++.+|+.
T Consensus       281 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI  345 (347)
T ss_dssp             GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred             hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence            458899999999999999999999999999999999999999997766 55677888888888864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.88  E-value=8.1e-22  Score=180.60  Aligned_cols=203  Identities=26%  Similarity=0.320  Sum_probs=99.3

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++..+  +.++++|++|++++|.+++..+  ++.+++|++|++++|.+++..+  +  ..+++|++|+++
T Consensus        71 ~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~--~~l~~L~~L~l~  142 (466)
T 1o6v_A           71 TQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--L--KNLTNLNRLELS  142 (466)
T ss_dssp             CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--G--TTCTTCSEEEEE
T ss_pred             CEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--H--cCCCCCCEEECC
Confidence            456666666664332  6666666666666666654433  5666666666666666655432  2  455555555555


Q ss_pred             CCcCcccCChhhhhccchhhh---------------------hh----------------------hccccc----cCcc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKI---------------------VN----------------------ARRMMT----YNKI  113 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~---------------------l~----------------------l~~~~~----~~~~  113 (305)
                      +|.+. .++.  +..+++|+.                     |+                      +..+..    ....
T Consensus       143 ~n~l~-~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  219 (466)
T 1o6v_A          143 SNTIS-DISA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI  219 (466)
T ss_dssp             EEEEC-CCGG--GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGG
T ss_pred             CCccC-CChh--hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccc
Confidence            55554 2321  222222222                     22                      221100    0111


Q ss_pred             cccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEe
Q 040815          114 PDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFN  193 (305)
Q Consensus       114 ~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  193 (305)
                      ++.|+.|++++|.+++ + ..+..+++|+.|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|+.|+
T Consensus       220 l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  293 (466)
T 1o6v_A          220 LTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE  293 (466)
T ss_dssp             CTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred             cCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEE
Confidence            2334444444444432 1 234444555555555555543322  4555555555555555553322  55556666666


Q ss_pred             ccCCcccCCCCCCCCCCccCCCccCCCC
Q 040815          194 VSDNYLTGPIPQGKQFATFDNTSFDGNS  221 (305)
Q Consensus       194 l~~N~l~~~~p~~~~~~~l~~~~~~~n~  221 (305)
                      +++|.+++..| ...++.+..+.+.+|.
T Consensus       294 L~~n~l~~~~~-~~~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          294 LNENQLEDISP-ISNLKNLTYLTLYFNN  320 (466)
T ss_dssp             CCSSCCSCCGG-GGGCTTCSEEECCSSC
T ss_pred             cCCCcccCchh-hcCCCCCCEEECcCCc
Confidence            66666654332 3344455555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.88  E-value=8.3e-22  Score=162.67  Aligned_cols=154  Identities=22%  Similarity=0.274  Sum_probs=90.5

Q ss_pred             EEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhc
Q 040815           26 FLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNAR  105 (305)
Q Consensus        26 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~  105 (305)
                      .++++++.++ .+|..+.  ++|+.|++++|.+++..+..+  ..+++|+.|+|++|.++ .+++..|..          
T Consensus        15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~--~~l~~L~~L~Ls~N~i~-~~~~~~~~~----------   78 (220)
T 2v9t_B           15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAF--SPYKKLRRIDLSNNQIS-ELAPDAFQG----------   78 (220)
T ss_dssp             EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSS--TTCTTCCEEECCSSCCC-EECTTTTTT----------
T ss_pred             EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHh--hCCCCCCEEECCCCcCC-CcCHHHhhC----------
Confidence            4445555443 2333221  345555555555554443333  44555555555555555 232222332          


Q ss_pred             cccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCcccccc
Q 040815          106 RMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVE  185 (305)
Q Consensus       106 ~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  185 (305)
                              ++.|+.|++++|.++...+..|..+++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..+..+..
T Consensus        79 --------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  150 (220)
T 2v9t_B           79 --------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP  150 (220)
T ss_dssp             --------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             --------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence                    233444445555555333444566777777777777777777777777778888888888877666666777


Q ss_pred             CCCCCEEeccCCcccCCC
Q 040815          186 LTFLEFFNVSDNYLTGPI  203 (305)
Q Consensus       186 l~~L~~L~l~~N~l~~~~  203 (305)
                      +++|++|++++|++.+..
T Consensus       151 l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B          151 LRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             CTTCCEEECCSSCEECSG
T ss_pred             CCCCCEEEeCCCCcCCCC
Confidence            778888888888877644

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.88  E-value=6.4e-22  Score=187.29  Aligned_cols=178  Identities=24%  Similarity=0.226  Sum_probs=135.4

Q ss_pred             EccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCc
Q 040815            4 KRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR   83 (305)
Q Consensus         4 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~   83 (305)
                      +-++.+++ .+|..+  -+++++|||++|+|++..+..|.++++|++|+|++|.|+++.+..|  .++++|++|+|++|+
T Consensus        37 ~c~~~~l~-~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f--~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           37 QCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY--QSLSHLSTLILTGNP  111 (635)
T ss_dssp             ECTTSCCS-SCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEEECTTCC
T ss_pred             ECCCCCcC-ccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHh--cCCCCCCEEEccCCc
Confidence            33444566 567554  2578999999999987777788999999999999999988877766  788999999999999


Q ss_pred             CcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccc-cCCccccCC
Q 040815           84 FSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG-LIPSSLGNL  162 (305)
Q Consensus        84 l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l  162 (305)
                      ++ .+|..+|.+++                  +|++|++++|.+++..+..|+++++|++|+|++|.+++ .+|..+..+
T Consensus       112 l~-~l~~~~f~~L~------------------~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l  172 (635)
T 4g8a_A          112 IQ-SLALGAFSGLS------------------SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL  172 (635)
T ss_dssp             CC-EECGGGGTTCT------------------TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred             CC-CCCHHHhcCCC------------------CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccc
Confidence            88 78877776644                  46666788888886666678888888888888888865 356777788


Q ss_pred             CCCCEEeCCCCcCCccCccccccCCCC----CEEeccCCcccCCCCC
Q 040815          163 TNLESLDLSNKKFAGRIPQQLVELTFL----EFFNVSDNYLTGPIPQ  205 (305)
Q Consensus       163 ~~L~~L~L~~N~l~~~~p~~~~~l~~L----~~L~l~~N~l~~~~p~  205 (305)
                      ++|++|++++|++++..+..+..+.++    ..++++.|.++...+.
T Consensus       173 ~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~  219 (635)
T 4g8a_A          173 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG  219 (635)
T ss_dssp             TTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred             hhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcc
Confidence            888888888888887777776655443    3577888877754443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.87  E-value=2.9e-21  Score=160.41  Aligned_cols=156  Identities=18%  Similarity=0.156  Sum_probs=115.9

Q ss_pred             CcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhh
Q 040815           24 LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVN  103 (305)
Q Consensus        24 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~  103 (305)
                      -+.++.+++.++ .+|..+  .++|++|+|++|.+++..+..+  ..+++|+.|+|++|.+. .+|...|..        
T Consensus        21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~N~l~-~i~~~~~~~--------   86 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVF--DSLINLKELYLGSNQLG-ALPVGVFDS--------   86 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTT--------
T ss_pred             CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHh--hCccCCcEEECCCCCCC-CcChhhccc--------
Confidence            456777777764 455433  3677777777777777666555  66777777777777776 666554443        


Q ss_pred             hccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCcccc
Q 040815          104 ARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQL  183 (305)
Q Consensus       104 l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  183 (305)
                                ++.|+.|++++|.+++..+..|..+++|+.|+|++|+++ .+|..+..+++|++|+|++|++++..+..+
T Consensus        87 ----------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~  155 (229)
T 3e6j_A           87 ----------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF  155 (229)
T ss_dssp             ----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred             ----------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH
Confidence                      344666667777777666666778888999999999888 678888888899999999999886666778


Q ss_pred             ccCCCCCEEeccCCcccCCCC
Q 040815          184 VELTFLEFFNVSDNYLTGPIP  204 (305)
Q Consensus       184 ~~l~~L~~L~l~~N~l~~~~p  204 (305)
                      ..+++|+.|++++|++++.++
T Consensus       156 ~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          156 DRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TTCTTCCEEECTTSCBCTTBG
T ss_pred             hCCCCCCEEEeeCCCccCCcc
Confidence            888899999999999887765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=6.6e-22  Score=161.76  Aligned_cols=160  Identities=17%  Similarity=0.138  Sum_probs=138.7

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+  ..+++|++|+++
T Consensus        31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~  108 (208)
T 2o6s_A           31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF--DKLTQLKELALN  108 (208)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred             cEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHh--cCccCCCEEEcC
Confidence            579999999997777788999999999999999997777778999999999999999998766555  789999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG  160 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  160 (305)
                      +|.++ .++...|..                  ++.|+.|++++|.+++..+..+..+++|+.|++++|.+.+       
T Consensus       109 ~N~l~-~~~~~~~~~------------------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------  162 (208)
T 2o6s_A          109 TNQLQ-SLPDGVFDK------------------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------  162 (208)
T ss_dssp             SSCCC-CCCTTTTTT------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------
T ss_pred             CCcCc-ccCHhHhcc------------------CCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------
Confidence            99999 677655554                  4567888899999997777778999999999999998774       


Q ss_pred             CCCCCCEEeCCCCcCCccCccccccCCC
Q 040815          161 NLTNLESLDLSNKKFAGRIPQQLVELTF  188 (305)
Q Consensus       161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~  188 (305)
                      .+++|+.|+++.|.++|.+|..++.++.
T Consensus       163 ~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          163 TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            4568999999999999999998887654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.87  E-value=7.1e-22  Score=175.15  Aligned_cols=180  Identities=19%  Similarity=0.185  Sum_probs=146.5

Q ss_pred             CcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCC-CCCCccEEEccCCcCcccCChhhhhccchhhhh
Q 040815           24 LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGC-GFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIV  102 (305)
Q Consensus        24 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l  102 (305)
                      -+.++++++.++ .+|..+  ...++.|+|++|.+++..+..+  . .+++|+.|+|++|+++ .++...|..       
T Consensus        20 ~~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~--~~~l~~L~~L~L~~N~i~-~i~~~~~~~-------   86 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWT--PTRLTNLHSLLLSHNHLN-FISSEAFVP-------   86 (361)
T ss_dssp             TTEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCEECTTSS--SSCCTTCCEEECCSSCCC-EECTTTTTT-------
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCccChhhh--hhcccccCEEECCCCcCC-ccChhhccC-------
Confidence            368999999997 477654  3569999999999998876665  5 8999999999999999 677655654       


Q ss_pred             hhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccc
Q 040815          103 NARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQ  182 (305)
Q Consensus       103 ~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  182 (305)
                                 ++.|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..|..+++|++|+|++|.+++..+..
T Consensus        87 -----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~  155 (361)
T 2xot_A           87 -----------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL  155 (361)
T ss_dssp             -----------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred             -----------CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence                       455788889999999777778999999999999999999888999999999999999999999654444


Q ss_pred             c---ccCCCCCEEeccCCcccCCCCCC-CCCCc--cCCCccCCCCCCCCCC
Q 040815          183 L---VELTFLEFFNVSDNYLTGPIPQG-KQFAT--FDNTSFDGNSGLCGKP  227 (305)
Q Consensus       183 ~---~~l~~L~~L~l~~N~l~~~~p~~-~~~~~--l~~~~~~~n~~~c~~~  227 (305)
                      +   ..+++|+.||+++|.|++..+.. ..++.  +..+.+.+||+.|+|.
T Consensus       156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence            5   56899999999999999543221 12222  3567899999999985

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.86  E-value=4.8e-21  Score=158.11  Aligned_cols=153  Identities=20%  Similarity=0.241  Sum_probs=132.6

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      +.++++++.++ .+|..+.  ++|+.|++++|.|++..+..|..+++|++|+|++|.+++..+..+  ..+++|++|+|+
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF--QGLRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT--TTCSSCCEEECC
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh--hCCcCCCEEECC
Confidence            36788999998 6776654  789999999999988777789999999999999999998877777  889999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG  160 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  160 (305)
                      +|.++ .+|...|..                  ++.|+.|++++|.+++..|..|..+++|+.|+|++|.+++..+..|.
T Consensus        89 ~N~l~-~l~~~~f~~------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  149 (220)
T 2v9t_B           89 GNKIT-ELPKSLFEG------------------LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS  149 (220)
T ss_dssp             SSCCC-CCCTTTTTT------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             CCcCC-ccCHhHccC------------------CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh
Confidence            99999 888776655                  44577788999999988888999999999999999999988777899


Q ss_pred             CCCCCCEEeCCCCcCCc
Q 040815          161 NLTNLESLDLSNKKFAG  177 (305)
Q Consensus       161 ~l~~L~~L~L~~N~l~~  177 (305)
                      .+++|++|+|++|.+..
T Consensus       150 ~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          150 PLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TCTTCCEEECCSSCEEC
T ss_pred             CCCCCCEEEeCCCCcCC
Confidence            99999999999998864

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.86  E-value=7.7e-21  Score=163.53  Aligned_cols=166  Identities=21%  Similarity=0.316  Sum_probs=123.2

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|++|++++|.+++...    +..+++|+.|+++
T Consensus        49 ~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L~  120 (291)
T 1h6t_A           49 DQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS----LKDLKKLKSLSLE  120 (291)
T ss_dssp             CEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG----GTTCTTCCEEECT
T ss_pred             cEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh----hccCCCCCEEECC
Confidence            457777777763 33 46677777777777777765443  6777777777777777765421    2667777777777


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG  160 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  160 (305)
                      +|.+. .++.  +.                  .++.|+.|++++|.+++.  ..+..+++|+.|++++|.+++..|  +.
T Consensus       121 ~n~i~-~~~~--l~------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~  175 (291)
T 1h6t_A          121 HNGIS-DING--LV------------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA  175 (291)
T ss_dssp             TSCCC-CCGG--GG------------------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             CCcCC-CChh--hc------------------CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hc
Confidence            77776 3321  22                  255688888999999854  568889999999999999986544  88


Q ss_pred             CCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccC
Q 040815          161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTG  201 (305)
Q Consensus       161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  201 (305)
                      .+++|++|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus       176 ~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          176 GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            89999999999999985 44 38889999999999999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=2e-21  Score=162.32  Aligned_cols=171  Identities=19%  Similarity=0.234  Sum_probs=142.8

Q ss_pred             CEEEccCCc-cccccchhccCCCCCcEEeCCC-cccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCcc---
Q 040815            1 MEAKRSHNL-FEGRIPRSLINCSKLEFLGLGN-YQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLR---   75 (305)
Q Consensus         1 ~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~---   75 (305)
                      ++|+|++|+ +++..+.+|.++++|++|++++ |.+++..+..|..+++|++|++++|.+++. |. +  ..+++|+   
T Consensus        58 ~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~l-p~-~--~~l~~L~~L~  133 (239)
T 2xwt_C           58 SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF-PD-L--TKVYSTDIFF  133 (239)
T ss_dssp             CEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSC-CC-C--TTCCBCCSEE
T ss_pred             cEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccc-cc-c--cccccccccc
Confidence            579999997 8877777999999999999998 999877778899999999999999999874 43 3  6778887   


Q ss_pred             EEEccCC-cCcccCChhhhhccchhhhhhhccccccCccccccc-EEEccCCccccccchhhhCCCCCCEEecCCcc-cc
Q 040815           76 IIDLSNN-RFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILA-GIILSNNRFVGAIPASIANLKGLQVLNLQYNN-LQ  152 (305)
Q Consensus        76 ~L~L~~n-~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~-~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~  152 (305)
                      .|++++| .+. .+|...|..                  ++.|+ .|++++|.++ .+|......++|+.|++++|. ++
T Consensus       134 ~L~l~~N~~l~-~i~~~~~~~------------------l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~  193 (239)
T 2xwt_C          134 ILEITDNPYMT-SIPVNAFQG------------------LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLT  193 (239)
T ss_dssp             EEEEESCTTCC-EECTTTTTT------------------TBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCC
T ss_pred             EEECCCCcchh-hcCcccccc------------------hhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcc
Confidence            9999999 888 777766665                  44577 7889999998 565554444899999999995 99


Q ss_pred             ccCCccccCC-CCCCEEeCCCCcCCccCccccccCCCCCEEeccCCc
Q 040815          153 GLIPSSLGNL-TNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNY  198 (305)
Q Consensus       153 ~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~  198 (305)
                      +..+..|..+ ++|++|++++|.++ .+|..  .+++|+.|+++++.
T Consensus       194 ~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          194 VIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             EECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred             cCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence            7777889999 99999999999998 45544  67889999998763

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.86  E-value=2.3e-21  Score=180.60  Aligned_cols=178  Identities=19%  Similarity=0.285  Sum_probs=146.7

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.|++ +|..+  +++|++|+|++|.|+ .+|   ..+++|++|+|++|.++++ |. +  ..  +|+.|+++
T Consensus        62 ~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~i-p~-l--~~--~L~~L~Ls  128 (571)
T 3cvr_A           62 SELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTL-PE-L--PA--SLKHLDVD  128 (571)
T ss_dssp             SEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCC-CC-C--CT--TCCEEECC
T ss_pred             cEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCc-ch-h--hc--CCCEEECC
Confidence            479999999996 77766  489999999999997 577   4579999999999999984 44 4  33  99999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhcccc--ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMM--TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSS  158 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~--~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  158 (305)
                      +|.++ .+|.    .+++|+.|+++++.  .+...+++|+.|++++|.+++ +|. +.  ++|+.|+|++|.|+ .+|. 
T Consensus       129 ~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-  197 (571)
T 3cvr_A          129 NNQLT-MLPE----LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-  197 (571)
T ss_dssp             SSCCS-CCCC----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-
T ss_pred             CCcCC-CCCC----cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-
Confidence            99999 5886    57888888887642  233356789999999999996 776 65  89999999999999 6676 


Q ss_pred             ccCCCCC-------CEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC
Q 040815          159 LGNLTNL-------ESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ  205 (305)
Q Consensus       159 ~~~l~~L-------~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  205 (305)
                      +..  +|       +.|+|++|.|+ .+|..+..+++|+.|++++|++++.+|.
T Consensus       198 ~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          198 VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            654  77       99999999999 6888888899999999999999987664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=8.6e-22  Score=173.91  Aligned_cols=216  Identities=17%  Similarity=0.181  Sum_probs=139.1

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcC-hhccCCCCCCE-EEccCccCCcccCCCCCCCCCCCccEEE
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFP-SWLGTLPKLNV-LILRSNIFYGVIEEPRTGCGFSKLRIID   78 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~~~l~~L~~L~   78 (305)
                      ++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.++++++. +.++.|+++.+.+..+  ..+++|++|+
T Consensus        33 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f--~~l~~L~~L~  110 (350)
T 4ay9_X           33 IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF--QNLPNLQYLL  110 (350)
T ss_dssp             SEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB--CCCTTCCEEE
T ss_pred             CEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh--hhcccccccc
Confidence            467888888875445577888888888888887765554 45677777664 5666677777766666  7778888888


Q ss_pred             ccCCcCcccCChhhhhccchhhhhhhcccc--------ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCC-c
Q 040815           79 LSNNRFSGNLPSKSFLCWNAMKIVNARRMM--------TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQY-N  149 (305)
Q Consensus        79 L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~--------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~-N  149 (305)
                      +++|.+. .+|+..+....++..+++....        .+......++.|++++|.++ .+|.......+|+++++++ |
T Consensus       111 l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n  188 (350)
T 4ay9_X          111 ISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNN  188 (350)
T ss_dssp             EEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCT
T ss_pred             ccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCC
Confidence            8888887 6665555555555555554311        11222346778888888887 4555544566788888874 5


Q ss_pred             cccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCC
Q 040815          150 NLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLC  224 (305)
Q Consensus       150 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c  224 (305)
                      .++...+.+|..+++|++||+++|+|+...+..   +.+|+.|.+.++.--..+|....+..+..+.+ .+++.|
T Consensus       189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l-~~~~~c  259 (350)
T 4ay9_X          189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLEKLVALMEASL-TYPSHC  259 (350)
T ss_dssp             TCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC-SCHHHH
T ss_pred             cccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCchhCcChhhCcC-CCCccc
Confidence            666444456788888888888888888433333   34455555544432336665555555555544 344444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.6e-21  Score=169.20  Aligned_cols=201  Identities=17%  Similarity=0.185  Sum_probs=162.9

Q ss_pred             cCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCc
Q 040815            6 SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFS   85 (305)
Q Consensus         6 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~   85 (305)
                      ..+.+++.+  .+.++++|++|++++|.++. ++ .+..+++|++|++++|.+++..+  +  ..+++|++|++++|.+.
T Consensus        27 ~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~--~~l~~L~~L~L~~n~l~   98 (308)
T 1h6u_A           27 GKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--L--KNLTKITELELSGNPLK   98 (308)
T ss_dssp             TCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--G--TTCCSCCEEECCSCCCS
T ss_pred             CCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--H--ccCCCCCEEEccCCcCC
Confidence            344444333  23468899999999999975 55 68899999999999999987754  3  88999999999999998


Q ss_pred             ccCChhhhhccchhhhhhhccccc----cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccC
Q 040815           86 GNLPSKSFLCWNAMKIVNARRMMT----YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGN  161 (305)
Q Consensus        86 g~~p~~~~~~l~~L~~l~l~~~~~----~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  161 (305)
                       .++  .+..+++|+.|+++++..    ....++.|+.|++++|.+++..+  +..+++|+.|++++|.+++. +. +..
T Consensus        99 -~~~--~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~  171 (308)
T 1h6u_A           99 -NVS--AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LAN  171 (308)
T ss_dssp             -CCG--GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTT
T ss_pred             -Cch--hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcC
Confidence             665  388899999999876321    23447889999999999985544  88999999999999999964 44 889


Q ss_pred             CCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCC
Q 040815          162 LTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLC  224 (305)
Q Consensus       162 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c  224 (305)
                      +++|++|++++|.+++..+  +..+++|++|++++|.+++..| ...++.+..+.+.+|+..+
T Consensus       172 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred             CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence            9999999999999985443  8889999999999999996553 4566777888888887644

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.86  E-value=4.5e-21  Score=158.29  Aligned_cols=158  Identities=17%  Similarity=0.178  Sum_probs=134.6

Q ss_pred             CCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCcc
Q 040815           48 LNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRF  127 (305)
Q Consensus        48 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l  127 (305)
                      -+.+++++|.++.+ |..+    ...++.|++++|.+++..+...|..                  ++.|+.|++++|.+
T Consensus        13 ~~~l~~s~n~l~~i-P~~~----~~~~~~L~L~~N~l~~~~~~~~~~~------------------l~~L~~L~L~~N~i   69 (220)
T 2v70_A           13 GTTVDCSNQKLNKI-PEHI----PQYTAELRLNNNEFTVLEATGIFKK------------------LPQLRKINFSNNKI   69 (220)
T ss_dssp             TTEEECCSSCCSSC-CSCC----CTTCSEEECCSSCCCEECCCCCGGG------------------CTTCCEEECCSSCC
T ss_pred             CCEeEeCCCCcccC-ccCC----CCCCCEEEcCCCcCCccCchhhhcc------------------CCCCCEEECCCCcC
Confidence            36899999999865 3332    3567999999999994445444544                  45678888999999


Q ss_pred             ccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-
Q 040815          128 VGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-  206 (305)
Q Consensus       128 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-  206 (305)
                      ++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..+..+++|++|++++|.+++..|.. 
T Consensus        70 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  149 (220)
T 2v70_A           70 TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF  149 (220)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred             CEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence            9887889999999999999999999888888999999999999999999888999999999999999999999886754 


Q ss_pred             CCCCccCCCccCCCCCCCCCCC
Q 040815          207 KQFATFDNTSFDGNSGLCGKPL  228 (305)
Q Consensus       207 ~~~~~l~~~~~~~n~~~c~~~~  228 (305)
                      ..+..+..+.+.+|++.|+|+.
T Consensus       150 ~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          150 DTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             TTCTTCCEEECCSCCEECSGGG
T ss_pred             cCCCCCCEEEecCcCCcCCCch
Confidence            4567788889999999999874

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.85  E-value=5.4e-22  Score=181.02  Aligned_cols=181  Identities=20%  Similarity=0.235  Sum_probs=122.6

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCC-------------CEEEccCccCCcccCCCCC
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKL-------------NVLILRSNIFYGVIEEPRT   67 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-------------~~L~L~~n~l~~~~~~~~~   67 (305)
                      ++|++++|.+ |.+|++++++++|++|++++|.+.+.+|..++.+.+|             ++|++++|.+++...    
T Consensus        14 ~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~----   88 (454)
T 1jl5_A           14 QEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE----   88 (454)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS----
T ss_pred             hhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC----
Confidence            4689999999 6999999999999999999999999999999988764             999999999987532    


Q ss_pred             CCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhcccc--ccCcccccccEEEccCCccccccchhhhCCCCCCEEe
Q 040815           68 GCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMM--TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLN  145 (305)
Q Consensus        68 ~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~--~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~  145 (305)
                        -.++|+.|++++|.++ .+|..    +.+|+.|+++.+.  .+...++.|++|++++|.+++ +| .++.+++|++|+
T Consensus        89 --~~~~L~~L~l~~n~l~-~lp~~----~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~  159 (454)
T 1jl5_A           89 --LPPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID  159 (454)
T ss_dssp             --CCTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             --CcCCCCEEEccCCcCC-ccccc----cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence              1368999999999998 47752    3677777776532  222445788999999998885 67 588888888888


Q ss_pred             cCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccC
Q 040815          146 LQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTG  201 (305)
Q Consensus       146 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  201 (305)
                      +++|++++ +|..+   .+|++|++++|.+++ +| .+..+++|++|++++|.+++
T Consensus       160 l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          160 VDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK  209 (454)
T ss_dssp             CCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred             CCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence            88888885 55433   477777777777775 45 46667777777777776664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=1.3e-22  Score=181.47  Aligned_cols=223  Identities=17%  Similarity=0.174  Sum_probs=143.0

Q ss_pred             CEEEccCCccccccc----hhccCCCCCcEEeCCCcc---cCCCcChhc-------cCCCCCCEEEccCccCCcc----c
Q 040815            1 MEAKRSHNLFEGRIP----RSLINCSKLEFLGLGNYQ---ISDTFPSWL-------GTLPKLNVLILRSNIFYGV----I   62 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~L~~n~---l~~~~p~~~-------~~l~~L~~L~L~~n~l~~~----~   62 (305)
                      ++|+|++|.+++..+    ..+..+++|++|+|++|.   +++.+|..+       ..+++|++|+|++|.++..    +
T Consensus        35 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l  114 (386)
T 2ca6_A           35 KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL  114 (386)
T ss_dssp             CEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHH
T ss_pred             cEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHH
Confidence            468888888886533    446778888888888854   334455444       6778888888888888752    2


Q ss_pred             CCCCCCCCCCCccEEEccCCcCcccCChh---hhhcc---------chhhhhhhcccccc----------CcccccccEE
Q 040815           63 EEPRTGCGFSKLRIIDLSNNRFSGNLPSK---SFLCW---------NAMKIVNARRMMTY----------NKIPDILAGI  120 (305)
Q Consensus        63 ~~~~~~~~l~~L~~L~L~~n~l~g~~p~~---~~~~l---------~~L~~l~l~~~~~~----------~~~~~~L~~L  120 (305)
                      +..+  ..+++|++|+|++|.+.+..+..   .+..+         ++|+.|+++.+...          ...++.|+.|
T Consensus       115 ~~~l--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  192 (386)
T 2ca6_A          115 IDFL--SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV  192 (386)
T ss_dssp             HHHH--HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred             HHHH--HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence            2233  56778888888888876222211   12222         66777776653211          1124577778


Q ss_pred             EccCCcccc-----ccchhhhCCCCCCEEecCCcccc----ccCCccccCCCCCCEEeCCCCcCCcc----Ccccccc--
Q 040815          121 ILSNNRFVG-----AIPASIANLKGLQVLNLQYNNLQ----GLIPSSLGNLTNLESLDLSNKKFAGR----IPQQLVE--  185 (305)
Q Consensus       121 ~ls~n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~--  185 (305)
                      ++++|.++.     ..+..+..+++|+.|+|++|.++    +.+|..+..+++|++|+|++|.+++.    ++..+..  
T Consensus       193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  272 (386)
T 2ca6_A          193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE  272 (386)
T ss_dssp             ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred             ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence            888877762     23336677777888888888775    45666677777788888888777754    4555533  


Q ss_pred             CCCCCEEeccCCcccC----CCCCC--CCCCccCCCccCCCCCCCC
Q 040815          186 LTFLEFFNVSDNYLTG----PIPQG--KQFATFDNTSFDGNSGLCG  225 (305)
Q Consensus       186 l~~L~~L~l~~N~l~~----~~p~~--~~~~~l~~~~~~~n~~~c~  225 (305)
                      +++|++|++++|.+++    .+|..  ..++.+..+.+.+|+....
T Consensus       273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            7777778887777775    24432  1245666666777765443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=9.6e-23  Score=182.30  Aligned_cols=204  Identities=19%  Similarity=0.207  Sum_probs=159.3

Q ss_pred             CEEEccCC---ccccccchhc-------cCCCCCcEEeCCCcccCC----CcChhccCCCCCCEEEccCccCCcccCCCC
Q 040815            1 MEAKRSHN---LFEGRIPRSL-------INCSKLEFLGLGNYQISD----TFPSWLGTLPKLNVLILRSNIFYGVIEEPR   66 (305)
Q Consensus         1 ~~L~Ls~n---~l~~~~~~~l-------~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~   66 (305)
                      ++|+|++|   ++++.+|..+       ..+++|++|+|++|.+++    .+|..+..+++|++|+|++|.++...+..+
T Consensus        63 ~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l  142 (386)
T 2ca6_A           63 EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI  142 (386)
T ss_dssp             CEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH
T ss_pred             cEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHH
Confidence            57899985   4555666555       789999999999999987    477788899999999999999864332222


Q ss_pred             C--CCCC---------CCccEEEccCCcCc-ccCCh--hhhhccchhhhhhhccccc-----------cCcccccccEEE
Q 040815           67 T--GCGF---------SKLRIIDLSNNRFS-GNLPS--KSFLCWNAMKIVNARRMMT-----------YNKIPDILAGII  121 (305)
Q Consensus        67 ~--~~~l---------~~L~~L~L~~n~l~-g~~p~--~~~~~l~~L~~l~l~~~~~-----------~~~~~~~L~~L~  121 (305)
                      .  +..+         ++|++|++++|++. +.++.  ..+..+++|+.|++..+..           ....++.|+.|+
T Consensus       143 ~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~  222 (386)
T 2ca6_A          143 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD  222 (386)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEE
T ss_pred             HHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEE
Confidence            0  1223         89999999999997 34442  3466788889888876321           223467899999


Q ss_pred             ccCCccc----cccchhhhCCCCCCEEecCCcccccc----CCcccc--CCCCCCEEeCCCCcCCc----cCcccc-ccC
Q 040815          122 LSNNRFV----GAIPASIANLKGLQVLNLQYNNLQGL----IPSSLG--NLTNLESLDLSNKKFAG----RIPQQL-VEL  186 (305)
Q Consensus       122 ls~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~--~l~~L~~L~L~~N~l~~----~~p~~~-~~l  186 (305)
                      +++|.++    +.+|..+..+++|+.|+|++|.+++.    ++..+.  .+++|++|+|++|.+++    .+|..+ ..+
T Consensus       223 Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l  302 (386)
T 2ca6_A          223 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM  302 (386)
T ss_dssp             CCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC
T ss_pred             CcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcC
Confidence            9999996    57888899999999999999999865    566663  48999999999999997    477777 568


Q ss_pred             CCCCEEeccCCcccCCCC
Q 040815          187 TFLEFFNVSDNYLTGPIP  204 (305)
Q Consensus       187 ~~L~~L~l~~N~l~~~~p  204 (305)
                      ++|++|++++|.+++..+
T Consensus       303 ~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          303 PDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TTCCEEECTTSBSCTTSH
T ss_pred             CCceEEEccCCcCCcchh
Confidence            999999999999997654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=1.2e-22  Score=180.18  Aligned_cols=58  Identities=12%  Similarity=-0.049  Sum_probs=27.7

Q ss_pred             EEccCCccccccchhccCCCCCcEEeCCCcccCCCcC----hhccCCC-CCCEEEccCccCCc
Q 040815            3 AKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFP----SWLGTLP-KLNVLILRSNIFYG   60 (305)
Q Consensus         3 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~   60 (305)
                      ++|++|.+++.+|..+...++|++|+|++|.+++..+    ..|..++ +|++|+|++|.+++
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~   65 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF   65 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCH
Confidence            4455555554444444444445555555555544333    3444444 45555555554443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=2.3e-22  Score=178.40  Aligned_cols=223  Identities=16%  Similarity=0.095  Sum_probs=165.4

Q ss_pred             CEEEccCCccccccc----hhccCCC-CCcEEeCCCcccCCCcChhccCC-----CCCCEEEccCccCCcccCCCC--CC
Q 040815            1 MEAKRSHNLFEGRIP----RSLINCS-KLEFLGLGNYQISDTFPSWLGTL-----PKLNVLILRSNIFYGVIEEPR--TG   68 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~----~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~~--~~   68 (305)
                      ++|+|++|.+++..+    ..+..++ +|++|+|++|.+++..+..+..+     ++|++|+|++|.+++..+..+  .+
T Consensus        25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l  104 (362)
T 3goz_A           25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTL  104 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred             eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHH
Confidence            579999999997766    7888998 99999999999998777777664     999999999999986544322  01


Q ss_pred             CCC-CCccEEEccCCcCcccCChhhhhc-----cchhhhhhhcccccc-----------CcccccccEEEccCCcccccc
Q 040815           69 CGF-SKLRIIDLSNNRFSGNLPSKSFLC-----WNAMKIVNARRMMTY-----------NKIPDILAGIILSNNRFVGAI  131 (305)
Q Consensus        69 ~~l-~~L~~L~L~~n~l~g~~p~~~~~~-----l~~L~~l~l~~~~~~-----------~~~~~~L~~L~ls~n~l~~~~  131 (305)
                      ..+ ++|+.|++++|.++ ..+...+..     ..+|+.|+++++.-.           ...+..|+.|++++|.+++..
T Consensus       105 ~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~  183 (362)
T 3goz_A          105 AAIPFTITVLDLGWNDFS-SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN  183 (362)
T ss_dssp             HTSCTTCCEEECCSSCGG-GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             HhCCCCccEEECcCCcCC-cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence            334 79999999999998 555544433     258888888763221           112348999999999998777


Q ss_pred             chhhh----CC-CCCCEEecCCcccccc----CCccccC-CCCCCEEeCCCCcCCccCc----cccccCCCCCEEeccCC
Q 040815          132 PASIA----NL-KGLQVLNLQYNNLQGL----IPSSLGN-LTNLESLDLSNKKFAGRIP----QQLVELTFLEFFNVSDN  197 (305)
Q Consensus       132 p~~~~----~l-~~L~~L~Ls~N~l~~~----~p~~~~~-l~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~l~~N  197 (305)
                      +..+.    .+ ++|+.|+|++|.+++.    ++..+.. .++|++|+|++|.+++..+    ..+..+++|++|++++|
T Consensus       184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred             HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence            65544    44 5999999999999863    4445555 4589999999999987654    33466788999999999


Q ss_pred             cccCCCCC--------CCCCCccCCCccCCCCCCC
Q 040815          198 YLTGPIPQ--------GKQFATFDNTSFDGNSGLC  224 (305)
Q Consensus       198 ~l~~~~p~--------~~~~~~l~~~~~~~n~~~c  224 (305)
                      .+.+..+.        .....++..+++.+|....
T Consensus       264 ~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          264 IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             CccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            86543221        2345567777888887543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=1.4e-21  Score=171.31  Aligned_cols=194  Identities=16%  Similarity=0.126  Sum_probs=130.3

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCC-cChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDT-FPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L   79 (305)
                      ++|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+|++|.+++..+..+  ..+++|++|++
T Consensus        73 ~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l--~~~~~L~~L~L  149 (336)
T 2ast_B           73 IAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL--AKNSNLVRLNL  149 (336)
T ss_dssp             SEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH--TTCTTCSEEEC
T ss_pred             eEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH--hcCCCCCEEEC
Confidence            3577777777765554 45678888888888887655 66777778888888888887765554444  56788888888


Q ss_pred             cCC-cCcccCChhhhhccchhhhhhhcccccc--------Ccccc-cccEEEccCC--ccc-cccchhhhCCCCCCEEec
Q 040815           80 SNN-RFSGNLPSKSFLCWNAMKIVNARRMMTY--------NKIPD-ILAGIILSNN--RFV-GAIPASIANLKGLQVLNL  146 (305)
Q Consensus        80 ~~n-~l~g~~p~~~~~~l~~L~~l~l~~~~~~--------~~~~~-~L~~L~ls~n--~l~-~~~p~~~~~l~~L~~L~L  146 (305)
                      ++| .+++......+..+++|+.|++.++..+        ...++ .|+.|++++|  .++ +.++..+..+++|+.|++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            888 5664212234666777777777654111        12245 7777777777  444 345666677777788888


Q ss_pred             CCcc-ccccCCccccCCCCCCEEeCCCCc-CCccCccccccCCCCCEEeccCC
Q 040815          147 QYNN-LQGLIPSSLGNLTNLESLDLSNKK-FAGRIPQQLVELTFLEFFNVSDN  197 (305)
Q Consensus       147 s~N~-l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~l~~N  197 (305)
                      ++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++|
T Consensus       230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            7777 666666677777778888887774 33222235667777777877777

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.84  E-value=4.5e-20  Score=173.51  Aligned_cols=166  Identities=21%  Similarity=0.310  Sum_probs=126.3

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN   81 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~   81 (305)
                      +|+|++|.+.. ++ .+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|.+++..  .  +..+++|+.|+|++
T Consensus        47 ~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~--l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           47 QIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--S--LKDLKKLKSLSLEH  118 (605)
T ss_dssp             CCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--T--STTCTTCCEEECTT
T ss_pred             EEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--h--hccCCCCCEEEecC
Confidence            46677777763 33 46677777777777777765444  667777777777777776532  2  36677777777777


Q ss_pred             CcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccC
Q 040815           82 NRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGN  161 (305)
Q Consensus        82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  161 (305)
                      |.+. .++.  +.                  .++.|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..|  +..
T Consensus       119 N~l~-~l~~--l~------------------~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~  173 (605)
T 1m9s_A          119 NGIS-DING--LV------------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG  173 (605)
T ss_dssp             SCCC-CCGG--GG------------------GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             CCCC-CCcc--cc------------------CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hcc
Confidence            7776 3332  22                  256788999999999865  678999999999999999997655  889


Q ss_pred             CCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCC
Q 040815          162 LTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGP  202 (305)
Q Consensus       162 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  202 (305)
                      +++|+.|+|++|.+++. | .+..+++|+.|+|++|.+++.
T Consensus       174 l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          174 LTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred             CCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence            99999999999999864 4 588999999999999999864

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.84  E-value=9.7e-20  Score=166.10  Aligned_cols=200  Identities=23%  Similarity=0.305  Sum_probs=102.1

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEE--
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIID--   78 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~--   78 (305)
                      ++|+|++|.+++ +| ++.++++|++|++++|++++ +|..   ..+|++|++++|.+++. | .+  ..+++|+.|+  
T Consensus       134 ~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l-~-~~--~~l~~L~~L~l~  203 (454)
T 1jl5_A          134 EYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL-P-EL--QNLPFLTAIYAD  203 (454)
T ss_dssp             CEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-C-CC--TTCTTCCEEECC
T ss_pred             CEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcC-c-cc--cCCCCCCEEECC
Confidence            456667776664 55 46667777777777766654 3432   13455555555555442 2 11  3444444444  


Q ss_pred             ------------------ccCCcCcccCChhhhhccchhhhhhhcccc--ccCcccccccEEEccCCccccccchhhhCC
Q 040815           79 ------------------LSNNRFSGNLPSKSFLCWNAMKIVNARRMM--TYNKIPDILAGIILSNNRFVGAIPASIANL  138 (305)
Q Consensus        79 ------------------L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~--~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l  138 (305)
                                        +++|.+. .+|.  +..+++|+.|+++++.  .+...++.|+.|++++|.+++ +|..   +
T Consensus       204 ~N~l~~l~~~~~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~-l~~~---~  276 (454)
T 1jl5_A          204 NNSLKKLPDLPLSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD-LPEL---P  276 (454)
T ss_dssp             SSCCSSCCCCCTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC-CCCC---C
T ss_pred             CCcCCcCCCCcCcccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc-cCcc---c
Confidence                              4444444 4442  4555555555555421  122234556666666666553 3332   2


Q ss_pred             CCCCEEecCCccccc--cCCccc-------------cCC-CCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCC
Q 040815          139 KGLQVLNLQYNNLQG--LIPSSL-------------GNL-TNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGP  202 (305)
Q Consensus       139 ~~L~~L~Ls~N~l~~--~~p~~~-------------~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  202 (305)
                      ++|+.|++++|.+++  .+|..+             ..+ ++|++|++++|++++ +|..   +++|++|++++|.++ .
T Consensus       277 ~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~  351 (454)
T 1jl5_A          277 QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-E  351 (454)
T ss_dssp             TTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-C
T ss_pred             CcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-c
Confidence            456666666666554  122111             111 355566666666553 4432   355666666666666 3


Q ss_pred             CCCCCCCCccCCCccCCCCCCC
Q 040815          203 IPQGKQFATFDNTSFDGNSGLC  224 (305)
Q Consensus       203 ~p~~~~~~~l~~~~~~~n~~~c  224 (305)
                      +|.  .+..+..+++.+|...+
T Consensus       352 lp~--~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          352 VPE--LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             CCC--CCTTCCEEECCSSCCSS
T ss_pred             ccc--hhhhccEEECCCCCCCc
Confidence            444  34555566666665544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=1.9e-21  Score=170.47  Aligned_cols=211  Identities=17%  Similarity=0.157  Sum_probs=169.7

Q ss_pred             CEEEccCCccccccchhccCC--CCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcc-cCCCCCCCCCCCccEE
Q 040815            1 MEAKRSHNLFEGRIPRSLINC--SKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGV-IEEPRTGCGFSKLRII   77 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L   77 (305)
                      +.|++++|.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+++. .+..+  ..+++|+.|
T Consensus        50 ~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~--~~~~~L~~L  123 (336)
T 2ast_B           50 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGIL--SQCSKLQNL  123 (336)
T ss_dssp             SEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHH--TTBCCCSEE
T ss_pred             eeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHH--hhCCCCCEE
Confidence            46899999887   4566667  8999999999999887665 56799999999999998754 44444  778999999


Q ss_pred             EccCCcCcccCChhhhhccchhhhhhhcccccc--------CcccccccEEEccCC-ccccc-cchhhhCCC-CCCEEec
Q 040815           78 DLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTY--------NKIPDILAGIILSNN-RFVGA-IPASIANLK-GLQVLNL  146 (305)
Q Consensus        78 ~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~--------~~~~~~L~~L~ls~n-~l~~~-~p~~~~~l~-~L~~L~L  146 (305)
                      ++++|.+++..+. .+..+++|+.|++.++..+        ...+++|++|++++| .+++. ++..+..++ +|++|++
T Consensus       124 ~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          124 SLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             ECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             eCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            9999999866664 4778999999999875322        223678999999999 99865 678889999 9999999


Q ss_pred             CCc--ccc-ccCCccccCCCCCCEEeCCCCc-CCccCccccccCCCCCEEeccCCcccCCCCC----CCCCCccCCCccC
Q 040815          147 QYN--NLQ-GLIPSSLGNLTNLESLDLSNKK-FAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ----GKQFATFDNTSFD  218 (305)
Q Consensus       147 s~N--~l~-~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~----~~~~~~l~~~~~~  218 (305)
                      ++|  .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|.  +..+.    ...++.+..+++.
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~  280 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQVF  280 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEECT
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEecc
Confidence            999  555 4567778889999999999999 787888889999999999999995  22222    2345666777777


Q ss_pred             CC
Q 040815          219 GN  220 (305)
Q Consensus       219 ~n  220 (305)
                      ||
T Consensus       281 ~~  282 (336)
T 2ast_B          281 GI  282 (336)
T ss_dssp             TS
T ss_pred             Cc
Confidence            76

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.83  E-value=2.9e-20  Score=150.08  Aligned_cols=130  Identities=20%  Similarity=0.287  Sum_probs=72.6

Q ss_pred             cEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCC-CCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhh
Q 040815           25 EFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEE-PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVN  103 (305)
Q Consensus        25 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~  103 (305)
                      +++++++|.++ .+|..+.  .+|++|++++|.+++..+. .+  ..+++|++|+|++|.+++..| ..|..        
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~-~~~~~--------   76 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLF--GRLPHLVKLELKRNQLTGIEP-NAFEG--------   76 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSG--GGCTTCCEEECCSSCCCCBCT-TTTTT--------
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCcccc--ccCCCCCEEECCCCCCCCcCH-hHcCC--------
Confidence            56677777764 4555442  2677777777777655443 23  566777777777776662222 22222        


Q ss_pred             hccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCcc
Q 040815          104 ARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGR  178 (305)
Q Consensus       104 l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  178 (305)
                                ++.|++|++++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|.+.+.
T Consensus        77 ----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           77 ----------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             ----------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             ----------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence                      22233344444444444444455556666666666666655566666666666666666666544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.83  E-value=1.4e-19  Score=150.13  Aligned_cols=156  Identities=21%  Similarity=0.214  Sum_probs=130.7

Q ss_pred             CCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCc
Q 040815           47 KLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNR  126 (305)
Q Consensus        47 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~  126 (305)
                      .-+.++.+++.++.+. ..+    .++|+.|+|++|.++ .++...|..                  ++.|+.|++++|.
T Consensus        20 s~~~v~c~~~~l~~ip-~~~----~~~L~~L~Ls~n~i~-~~~~~~~~~------------------l~~L~~L~L~~N~   75 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVP-AGI----PTNAQILYLHDNQIT-KLEPGVFDS------------------LINLKELYLGSNQ   75 (229)
T ss_dssp             ETTEEECTTSCCSSCC-SCC----CTTCSEEECCSSCCC-CCCTTTTTT------------------CTTCCEEECCSSC
T ss_pred             eCCEeEccCCCcCccC-CCC----CCCCCEEEcCCCccC-ccCHHHhhC------------------ccCCcEEECCCCC
Confidence            4678999999987653 222    389999999999999 454444554                  4567888899999


Q ss_pred             cccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC-
Q 040815          127 FVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ-  205 (305)
Q Consensus       127 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-  205 (305)
                      +++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|++++|.+++..+. 
T Consensus        76 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~  154 (229)
T 3e6j_A           76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA  154 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred             CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence            98666677899999999999999999877778899999999999999999 8899999999999999999999965543 


Q ss_pred             CCCCCccCCCccCCCCCCCCCC
Q 040815          206 GKQFATFDNTSFDGNSGLCGKP  227 (305)
Q Consensus       206 ~~~~~~l~~~~~~~n~~~c~~~  227 (305)
                      ...+..+..+.+.+|++.|+|+
T Consensus       155 ~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          155 FDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TTTCTTCCEEECTTSCBCTTBG
T ss_pred             HhCCCCCCEEEeeCCCccCCcc
Confidence            2456778888999999999986

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.83  E-value=5.1e-20  Score=158.40  Aligned_cols=184  Identities=19%  Similarity=0.263  Sum_probs=149.1

Q ss_pred             ccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcC
Q 040815            5 RSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRF   84 (305)
Q Consensus         5 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l   84 (305)
                      +..+.+++..  .+..+++|+.|++++|.+... + .+..+++|++|++++|.+++..+  +  ..+++|+.|++++|.+
T Consensus        31 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l--~~l~~L~~L~l~~n~l  102 (291)
T 1h6t_A           31 LKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--L--ANLKNLGWLFLDENKV  102 (291)
T ss_dssp             TTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--G--TTCTTCCEEECCSSCC
T ss_pred             hcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--c--ccCCCCCEEECCCCcC
Confidence            4445555332  235689999999999999754 4 48889999999999999988754  3  7899999999999999


Q ss_pred             cccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCC
Q 040815           85 SGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTN  164 (305)
Q Consensus        85 ~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  164 (305)
                      + .++.  +..                  ++.|+.|++++|.+++.  ..+..+++|+.|++++|.+++.  ..+..+++
T Consensus       103 ~-~~~~--l~~------------------l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~  157 (291)
T 1h6t_A          103 K-DLSS--LKD------------------LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTK  157 (291)
T ss_dssp             C-CGGG--GTT------------------CTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred             C-CChh--hcc------------------CCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCC
Confidence            8 4543  332                  56688899999999853  4688999999999999999965  56899999


Q ss_pred             CCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCC
Q 040815          165 LESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLC  224 (305)
Q Consensus       165 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c  224 (305)
                      |++|++++|.+++..+  +..+++|++|++++|.+++ +|....+..+..+.+.+|+..+
T Consensus       158 L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          158 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEEEEC
T ss_pred             CCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCcccC
Confidence            9999999999996554  8899999999999999985 4555667778888888886543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.82  E-value=4.8e-20  Score=156.21  Aligned_cols=164  Identities=21%  Similarity=0.296  Sum_probs=140.0

Q ss_pred             EEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCC
Q 040815            3 AKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNN   82 (305)
Q Consensus         3 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n   82 (305)
                      +++++|.+++ ++ .+.++++|++|++++|.++. ++ .+..+++|++|+|++|.+++..+  +  ..+++|+.|++++|
T Consensus        24 l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l--~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           24 QNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--L--KDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--G--TTCSSCCEEECCSS
T ss_pred             HHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--h--ccCCCCCEEECCCC
Confidence            4678888884 44 67889999999999999974 55 68899999999999999988765  3  78999999999999


Q ss_pred             cCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCC
Q 040815           83 RFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNL  162 (305)
Q Consensus        83 ~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  162 (305)
                      +++ .+|..  .                   .+.|+.|++++|.+++ ++ .+..+++|+.|++++|++++. + .+..+
T Consensus        96 ~l~-~l~~~--~-------------------~~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l  149 (263)
T 1xeu_A           96 RLK-NLNGI--P-------------------SACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFL  149 (263)
T ss_dssp             CCS-CCTTC--C-------------------CSSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGC
T ss_pred             ccC-CcCcc--c-------------------cCcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccC
Confidence            998 56541  1                   1568999999999985 44 589999999999999999964 4 68899


Q ss_pred             CCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCC
Q 040815          163 TNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGP  202 (305)
Q Consensus       163 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  202 (305)
                      ++|++|++++|++++.  ..+..+++|+.|++++|.+++.
T Consensus       150 ~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          150 SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            9999999999999966  6788999999999999999865

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=2.4e-19  Score=168.84  Aligned_cols=75  Identities=24%  Similarity=0.311  Sum_probs=41.3

Q ss_pred             CCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC-CCCCCccCCCcc
Q 040815          139 KGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSF  217 (305)
Q Consensus       139 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~  217 (305)
                      ++|+.|+|++|.+++ +|   ..+++|+.|++++|.++ .+|.   .+++|+.|++++|.++ .+|. ...++.+..+++
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            445555666665553 33   23455666666666665 3444   3456666666666666 4443 233445555566


Q ss_pred             CCCCC
Q 040815          218 DGNSG  222 (305)
Q Consensus       218 ~~n~~  222 (305)
                      .+|+.
T Consensus       292 ~~N~l  296 (622)
T 3g06_A          292 EGNPL  296 (622)
T ss_dssp             CSCCC
T ss_pred             cCCCC
Confidence            66654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=1.7e-19  Score=169.85  Aligned_cols=120  Identities=25%  Similarity=0.337  Sum_probs=86.9

Q ss_pred             CCccEEEccCCcCcccCChhhhhccchhhhhhhccc--cccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCc
Q 040815           72 SKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRM--MTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYN  149 (305)
Q Consensus        72 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~--~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  149 (305)
                      ++|+.|++++|.++ .+|..    +++|+.|++.++  ..+...+++|+.|++++|.+++ +|   ..+++|+.|+|++|
T Consensus       181 ~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N  251 (622)
T 3g06_A          181 SGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGN  251 (622)
T ss_dssp             TTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSS
T ss_pred             CCCcEEECCCCCCC-CCCCc----cchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCC
Confidence            44444555555444 33321    233444443331  1222335779999999999984 56   45689999999999


Q ss_pred             cccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC
Q 040815          150 NLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ  205 (305)
Q Consensus       150 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  205 (305)
                      .++ .+|.   .+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++.+|.
T Consensus       252 ~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          252 RLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            999 5665   6789999999999999 8899999999999999999999987664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=8.9e-20  Score=160.95  Aligned_cols=212  Identities=13%  Similarity=0.050  Sum_probs=158.5

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccC-CCCCCCCCCCccE-EE
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIE-EPRTGCGFSKLRI-ID   78 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~-L~   78 (305)
                      ++++.++++++ .+|..+  .+++++|+|++|+|+...+.+|.++++|++|+|++|.+.+.++ ..|  .++++++. ++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f--~~L~~l~~~l~   86 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF--SNLPKLHEIRI   86 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSB--CSCTTCCEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHh--hcchhhhhhhc
Confidence            35788899999 788766  4789999999999986656689999999999999999876554 344  77888775 66


Q ss_pred             ccCCcCcccCChhhhhccchhhhhhhcccccc------CcccccccEEEccC-CccccccchhhhCCC-CCCEEecCCcc
Q 040815           79 LSNNRFSGNLPSKSFLCWNAMKIVNARRMMTY------NKIPDILAGIILSN-NRFVGAIPASIANLK-GLQVLNLQYNN  150 (305)
Q Consensus        79 L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~------~~~~~~L~~L~ls~-n~l~~~~p~~~~~l~-~L~~L~Ls~N~  150 (305)
                      ++.|++. .+++..|..+++|+.|++.++...      ......+..+++.+ +.+....+..|..+. .++.|+|++|+
T Consensus        87 ~~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~  165 (350)
T 4ay9_X           87 EKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  165 (350)
T ss_dssp             EEETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             ccCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence            7789999 888888999999999998763211      11234567788865 567655555666664 68999999999


Q ss_pred             ccccCCccccCCCCCCEEeCCC-CcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCC
Q 040815          151 LQGLIPSSLGNLTNLESLDLSN-KKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNS  221 (305)
Q Consensus       151 l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~  221 (305)
                      ++.. |.......+|++|++++ |.++...++.|..+++|++||+++|+|+ .+|.. .+..+..+...++.
T Consensus       166 i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~-~~~~L~~L~~l~~~  234 (350)
T 4ay9_X          166 IQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY-GLENLKKLRARSTY  234 (350)
T ss_dssp             CCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS-SCTTCCEEECTTCT
T ss_pred             ccCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh-hhccchHhhhccCC
Confidence            9954 44444567899999985 6666444457899999999999999999 45543 34555555444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.82  E-value=3.1e-19  Score=144.64  Aligned_cols=154  Identities=16%  Similarity=0.210  Sum_probs=126.7

Q ss_pred             cCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccch
Q 040815           19 INCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNA   98 (305)
Q Consensus        19 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~   98 (305)
                      ..+++|+.|++++|.++ .+| .+..+++|++|++++|.++...  .  +..+++|++|++++|.+++..+.. +..   
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~--~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~---  110 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN--P--ISGLSNLERLRIMGKDVTSDKIPN-LSG---  110 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG--G--GTTCTTCCEEEEECTTCBGGGSCC-CTT---
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch--h--hhcCCCCCEEEeECCccCcccChh-hcC---
Confidence            56789999999999997 456 6889999999999999776442  3  377999999999999998545533 332   


Q ss_pred             hhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcc-ccccCCccccCCCCCCEEeCCCCcCCc
Q 040815           99 MKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNN-LQGLIPSSLGNLTNLESLDLSNKKFAG  177 (305)
Q Consensus        99 L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~  177 (305)
                                     ++.|+.|++++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|++|++++|.+++
T Consensus       111 ---------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          111 ---------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             ---------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC
T ss_pred             ---------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC
Confidence                           4568888899999998889999999999999999998 65 556 68999999999999999985


Q ss_pred             cCccccccCCCCCEEeccCCcccC
Q 040815          178 RIPQQLVELTFLEFFNVSDNYLTG  201 (305)
Q Consensus       178 ~~p~~~~~l~~L~~L~l~~N~l~~  201 (305)
                       ++ .+..+++|++|++++|++.+
T Consensus       174 -~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          174 -YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             -CT-TGGGCSSCCEEEECBC----
T ss_pred             -hH-HhccCCCCCEEEeeCcccCC
Confidence             44 68899999999999999864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.81  E-value=6.8e-20  Score=147.93  Aligned_cols=155  Identities=17%  Similarity=0.219  Sum_probs=123.4

Q ss_pred             CEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCCh-hhhhccchhhhhhhccccccCcccccccEEEccCCcc
Q 040815           49 NVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPS-KSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRF  127 (305)
Q Consensus        49 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l  127 (305)
                      +++++++|.++.+ |..+    ..+|+.|++++|.+. .++. ..|..                  ++.|+.|++++|.+
T Consensus        11 ~~l~~s~~~l~~i-p~~~----~~~l~~L~l~~n~i~-~~~~~~~~~~------------------l~~L~~L~Ls~N~l   66 (192)
T 1w8a_A           11 TTVDCTGRGLKEI-PRDI----PLHTTELLLNDNELG-RISSDGLFGR------------------LPHLVKLELKRNQL   66 (192)
T ss_dssp             TEEECTTSCCSSC-CSCC----CTTCSEEECCSCCCC-SBCCSCSGGG------------------CTTCCEEECCSSCC
T ss_pred             CEEEcCCCCcCcC-ccCC----CCCCCEEECCCCcCC-ccCCcccccc------------------CCCCCEEECCCCCC
Confidence            7899999999755 3332    248999999999998 5553 33443                  45678888999999


Q ss_pred             ccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCC
Q 040815          128 VGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGK  207 (305)
Q Consensus       128 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~  207 (305)
                      ++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+..+++|++|++++|+++|.++...
T Consensus        67 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~  146 (192)
T 1w8a_A           67 TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW  146 (192)
T ss_dssp             CCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH
T ss_pred             CCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH
Confidence            98889999999999999999999999888889999999999999999999999999999999999999999998876421


Q ss_pred             CCCccCCCccCCCCCCCCCC
Q 040815          208 QFATFDNTSFDGNSGLCGKP  227 (305)
Q Consensus       208 ~~~~l~~~~~~~n~~~c~~~  227 (305)
                      ....+....+.++...|..|
T Consensus       147 ~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          147 FAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             HHHHHHHHCCSGGGCBBCSS
T ss_pred             HHHHHHHcCCCCCCCCCCCC
Confidence            11112222344555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.80  E-value=1.7e-19  Score=169.66  Aligned_cols=183  Identities=19%  Similarity=0.264  Sum_probs=150.6

Q ss_pred             EccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCc
Q 040815            4 KRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR   83 (305)
Q Consensus         4 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~   83 (305)
                      .++.+.+.+..+  +..+.+|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..+    +..+++|+.|+|++|.
T Consensus        27 ~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~   98 (605)
T 1m9s_A           27 NLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENK   98 (605)
T ss_dssp             HTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSC
T ss_pred             hccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCCC
Confidence            355566664433  4678999999999999975 44 58899999999999999988765    3789999999999999


Q ss_pred             CcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCC
Q 040815           84 FSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLT  163 (305)
Q Consensus        84 l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  163 (305)
                      +. .+|.  +..                  ++.|+.|+|++|.+.+ + ..+..+++|+.|+|++|.+++.  ..+..++
T Consensus        99 l~-~l~~--l~~------------------l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~  153 (605)
T 1m9s_A           99 IK-DLSS--LKD------------------LKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLT  153 (605)
T ss_dssp             CC-CCTT--STT------------------CTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCT
T ss_pred             CC-CChh--hcc------------------CCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccC
Confidence            98 5552  332                  5668889999999985 3 4588999999999999999965  5689999


Q ss_pred             CCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCC
Q 040815          164 NLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSG  222 (305)
Q Consensus       164 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~  222 (305)
                      +|+.|+|++|.+++..|  +..+++|+.|+|++|.+++ +|....+..+..+.+.+|+.
T Consensus       154 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          154 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEECCSEEE
T ss_pred             CCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-ChHHccCCCCCEEEccCCcC
Confidence            99999999999997666  8899999999999999996 46666677788888888764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.80  E-value=7.8e-22  Score=184.34  Aligned_cols=180  Identities=21%  Similarity=0.234  Sum_probs=131.8

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcc-------------cCCCcChhccCCCCCCEEE-ccCccCCcccCC---
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQ-------------ISDTFPSWLGTLPKLNVLI-LRSNIFYGVIEE---   64 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-L~~n~l~~~~~~---   64 (305)
                      .|+|++|+++ .+|..++.+++|+.|++++|.             +.+..|..++.+++|+.|+ ++.|.+......   
T Consensus       353 ~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~  431 (567)
T 1dce_A          353 RCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL  431 (567)
T ss_dssp             SCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             eccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhh
Confidence            4677777776 677778888888888876664             4456666677777777776 454433211000   


Q ss_pred             --CCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCC
Q 040815           65 --PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQ  142 (305)
Q Consensus        65 --~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~  142 (305)
                        .+.......|+.|+|++|.++ .+|.  +..                  ++.|+.|++++|.++ .+|..++.+++|+
T Consensus       432 ~n~i~~l~~~~L~~L~Ls~n~l~-~lp~--~~~------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~  489 (567)
T 1dce_A          432 ENSVLKMEYADVRVLHLAHKDLT-VLCH--LEQ------------------LLLVTHLDLSHNRLR-ALPPALAALRCLE  489 (567)
T ss_dssp             HHHHHHHHHTTCSEEECTTSCCS-SCCC--GGG------------------GTTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred             cccccccCccCceEEEecCCCCC-CCcC--ccc------------------cccCcEeecCccccc-ccchhhhcCCCCC
Confidence              000001125788888888888 5764  443                  445778889999998 7888999999999


Q ss_pred             EEecCCccccccCCccccCCCCCCEEeCCCCcCCccC-ccccccCCCCCEEeccCCcccCCCCCC
Q 040815          143 VLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRI-PQQLVELTFLEFFNVSDNYLTGPIPQG  206 (305)
Q Consensus       143 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~p~~  206 (305)
                      .|+|++|.+++ +| .++.+++|++|+|++|.+++.. |..+..+++|+.|++++|++++.+|..
T Consensus       490 ~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          490 VLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             EEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             EEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            99999999986 56 7889999999999999999776 888999999999999999998776643

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.78  E-value=2.5e-20  Score=170.14  Aligned_cols=60  Identities=15%  Similarity=0.037  Sum_probs=31.7

Q ss_pred             CEEEccCCccccc----cchhccCCCCCcEEeCCCcccCCCcChhcc-----CCCCCCEEEccCccCCc
Q 040815            1 MEAKRSHNLFEGR----IPRSLINCSKLEFLGLGNYQISDTFPSWLG-----TLPKLNVLILRSNIFYG   60 (305)
Q Consensus         1 ~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~   60 (305)
                      ++|+|++|++++.    ++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.++.
T Consensus       145 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  213 (461)
T 1z7x_W          145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS  213 (461)
T ss_dssp             CEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             eEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence            3566666666653    244455556666666666665433222222     23455555555555543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.77  E-value=7.2e-21  Score=173.78  Aligned_cols=200  Identities=18%  Similarity=0.102  Sum_probs=140.6

Q ss_pred             CEEEccCCccccccchhcc-----CCCCCcEEeCCCcccCCC----cChhccCCCCCCEEEccCccCCcccCCCCC--C-
Q 040815            1 MEAKRSHNLFEGRIPRSLI-----NCSKLEFLGLGNYQISDT----FPSWLGTLPKLNVLILRSNIFYGVIEEPRT--G-   68 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~-   68 (305)
                      ++|+|++|.+++..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.++......+.  + 
T Consensus       116 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  195 (461)
T 1z7x_W          116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK  195 (461)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHH
T ss_pred             eEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHh
Confidence            5799999998865444333     356899999999998864    355667789999999999988654222210  0 


Q ss_pred             CCCCCccEEEccCCcCccc----CChhhhhccchhhhhhhccccc-----------cCcccccccEEEccCCccccc---
Q 040815           69 CGFSKLRIIDLSNNRFSGN----LPSKSFLCWNAMKIVNARRMMT-----------YNKIPDILAGIILSNNRFVGA---  130 (305)
Q Consensus        69 ~~l~~L~~L~L~~n~l~g~----~p~~~~~~l~~L~~l~l~~~~~-----------~~~~~~~L~~L~ls~n~l~~~---  130 (305)
                      ...++|+.|++++|.+++.    ++ ..+..+++|+.|+++.+..           ....++.|+.|++++|.+++.   
T Consensus       196 ~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~  274 (461)
T 1z7x_W          196 DSPCQLEALKLESCGVTSDNCRDLC-GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG  274 (461)
T ss_dssp             HSCCCCCEEECTTSCCBTTHHHHHH-HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred             cCCCCceEEEccCCCCcHHHHHHHH-HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH
Confidence            1356899999999988732    33 3366778888888776321           112357889999999988854   


Q ss_pred             -cchhhhCCCCCCEEecCCccccccCCcccc-----CCCCCCEEeCCCCcCCcc----CccccccCCCCCEEeccCCccc
Q 040815          131 -IPASIANLKGLQVLNLQYNNLQGLIPSSLG-----NLTNLESLDLSNKKFAGR----IPQQLVELTFLEFFNVSDNYLT  200 (305)
Q Consensus       131 -~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~  200 (305)
                       ++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.++
T Consensus       275 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  354 (461)
T 1z7x_W          275 DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE  354 (461)
T ss_dssp             HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred             HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence             567777788899999998888754443332     235788888888887754    4555666777888888888776


Q ss_pred             C
Q 040815          201 G  201 (305)
Q Consensus       201 ~  201 (305)
                      +
T Consensus       355 ~  355 (461)
T 1z7x_W          355 D  355 (461)
T ss_dssp             H
T ss_pred             c
Confidence            4

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.77  E-value=4.8e-18  Score=143.88  Aligned_cols=144  Identities=23%  Similarity=0.270  Sum_probs=122.4

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|++++|.++ .++ .+..+++|++|++++|++++..+  +..+++|++|+|++|.+++..+.    .. ++|+.|+++
T Consensus        44 ~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~----~~-~~L~~L~L~  114 (263)
T 1xeu_A           44 QNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGI----PS-ACLSRLFLD  114 (263)
T ss_dssp             SEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTC----CC-SSCCEEECC
T ss_pred             cEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcc----cc-CcccEEEcc
Confidence            57999999998 566 78999999999999999987554  89999999999999999875322    22 899999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG  160 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  160 (305)
                      +|+++ .++.  +..                  ++.|+.|++++|.+++. + .+..+++|+.|++++|++++.  ..+.
T Consensus       115 ~N~l~-~~~~--l~~------------------l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~  169 (263)
T 1xeu_A          115 NNELR-DTDS--LIH------------------LKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLT  169 (263)
T ss_dssp             SSCCS-BSGG--GTT------------------CTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTST
T ss_pred             CCccC-CChh--hcC------------------cccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhc
Confidence            99998 4542  333                  55688889999999854 4 688999999999999999976  6689


Q ss_pred             CCCCCCEEeCCCCcCCcc
Q 040815          161 NLTNLESLDLSNKKFAGR  178 (305)
Q Consensus       161 ~l~~L~~L~L~~N~l~~~  178 (305)
                      .+++|+.|++++|.+++.
T Consensus       170 ~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          170 RLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TCCCCCEEEEEEEEEECC
T ss_pred             cCCCCCEEeCCCCcccCC
Confidence            999999999999999855

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.77  E-value=2.6e-18  Score=138.70  Aligned_cols=132  Identities=21%  Similarity=0.331  Sum_probs=113.9

Q ss_pred             ccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccc
Q 040815           74 LRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG  153 (305)
Q Consensus        74 L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  153 (305)
                      -+.+++++|.++ .+|...                     ++.++.|++++|.++ .+|..|..+++|+.|+|++|.+++
T Consensus        12 ~~~l~~~~~~l~-~ip~~~---------------------~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~   68 (193)
T 2wfh_A           12 DTVVRCSNKGLK-VLPKGI---------------------PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST   68 (193)
T ss_dssp             TTEEECTTSCCS-SCCSCC---------------------CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             CCEEEcCCCCCC-cCCCCC---------------------CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCE
Confidence            367899999988 888642                     346889999999998 788899999999999999999998


Q ss_pred             cCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC-CCCCCccCCCccCCCCCCCCCCC
Q 040815          154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSFDGNSGLCGKPL  228 (305)
Q Consensus       154 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~~  228 (305)
                      ..+.+|..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..+. ...+..+..+.+.+|++.|+|..
T Consensus        69 i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A           69 LSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             eCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence            8888899999999999999999988888899999999999999999965543 24567788888999999999864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=1.6e-18  Score=161.42  Aligned_cols=163  Identities=21%  Similarity=0.291  Sum_probs=134.6

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|.|+ .+|   ..+++|++|++++|+|++ +|. +..  +|++|+|++|.++++. .     .+++|+.|+++
T Consensus        83 ~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp-~-----~l~~L~~L~Ls  148 (571)
T 3cvr_A           83 TVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLP-E-----LPALLEYINAD  148 (571)
T ss_dssp             SEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCC-C-----CCTTCCEEECC
T ss_pred             CEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCC-C-----cCccccEEeCC
Confidence            57999999999 677   458999999999999987 776 655  9999999999998843 3     47899999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhcccc--ccCcccccccEEEccCCccccccchhhhCCCCC-------CEEecCCccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMM--TYNKIPDILAGIILSNNRFVGAIPASIANLKGL-------QVLNLQYNNL  151 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~--~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L-------~~L~Ls~N~l  151 (305)
                      +|.++ .+|.    .+++|+.|+++++.  .+....++|+.|++++|.++ .+|. +..  +|       +.|+|++|.|
T Consensus       149 ~N~l~-~lp~----~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l  219 (571)
T 3cvr_A          149 NNQLT-MLPE----LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRI  219 (571)
T ss_dssp             SSCCS-CCCC----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCC
T ss_pred             CCccC-cCCC----cCCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcc
Confidence            99999 5886    56788888887642  12223378999999999999 7776 654  77       9999999999


Q ss_pred             cccCCccccCCCCCCEEeCCCCcCCccCccccccCC
Q 040815          152 QGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELT  187 (305)
Q Consensus       152 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  187 (305)
                      + .+|..+..+++|+.|+|++|.+++.+|..+..++
T Consensus       220 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             C-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             e-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            9 6788888899999999999999999998877654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.76  E-value=4.4e-18  Score=134.15  Aligned_cols=134  Identities=24%  Similarity=0.227  Sum_probs=82.7

Q ss_pred             CCCCCcEEeCCCcccC-CCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccch
Q 040815           20 NCSKLEFLGLGNYQIS-DTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNA   98 (305)
Q Consensus        20 ~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~   98 (305)
                      ..++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+  ..+++|+.|++++|.+.+            
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~--~~l~~L~~L~Ls~N~l~~------------   85 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL--PKLPKLKKLELSENRIFG------------   85 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSC--CCCSSCCEEEEESCCCCS------------
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhh--ccCCCCCEEECcCCcCch------------
Confidence            3466777777777776 45666666677777777777776654  222  556666666666666653            


Q ss_pred             hhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccC-CccccCCCCCCEEeCCCCcCCc
Q 040815           99 MKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLI-PSSLGNLTNLESLDLSNKKFAG  177 (305)
Q Consensus        99 L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~  177 (305)
                                                     .+|..+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+++
T Consensus        86 -------------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~  134 (168)
T 2ell_A           86 -------------------------------GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN  134 (168)
T ss_dssp             -------------------------------CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred             -------------------------------HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence                                           33444445566666666666666421 1456666666666666666664


Q ss_pred             cCc---cccccCCCCCEEeccCCccc
Q 040815          178 RIP---QQLVELTFLEFFNVSDNYLT  200 (305)
Q Consensus       178 ~~p---~~~~~l~~L~~L~l~~N~l~  200 (305)
                      ..+   ..+..+++|++|++++|.+.
T Consensus       135 ~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          135 LNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             STTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             hHHHHHHHHHhCccCcEecCCCCChh
Confidence            433   35666666777777766665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.75  E-value=4.3e-19  Score=170.56  Aligned_cols=178  Identities=19%  Similarity=0.191  Sum_probs=109.2

Q ss_pred             EEEccCCccccccchhccCCCCCcE-----EeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccE
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEF-----LGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRI   76 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~-----L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~   76 (305)
                      .|+|.+|.+.. .+..+.....|+.     +++..|.+. ..++.|..+++|+.|+|++|.+..+ +...  ..+++|+.
T Consensus       177 ~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~--~~l~~L~~  251 (727)
T 4b8c_D          177 KIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNI-SANI--FKYDFLTR  251 (727)
T ss_dssp             -----------------------------------------------CCCCCCEEECTTSCCSCC-CGGG--GGCCSCSC
T ss_pred             eEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCC-Chhh--cCCCCCCE
Confidence            46677777764 3433323332322     233344443 4577788889999999999988744 3333  57889999


Q ss_pred             EEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC
Q 040815           77 IDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP  156 (305)
Q Consensus        77 L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  156 (305)
                      |+|++|.++ .+|.. |..                  ++.|+.|+|++|.|+ .+|..|+.+++|+.|+|++|.|+ .+|
T Consensus       252 L~Ls~N~l~-~lp~~-~~~------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp  309 (727)
T 4b8c_D          252 LYLNGNSLT-ELPAE-IKN------------------LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLP  309 (727)
T ss_dssp             CBCTTSCCS-CCCGG-GGG------------------GTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCC
T ss_pred             EEeeCCcCc-ccChh-hhC------------------CCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccC
Confidence            999999998 88864 443                  455778889999998 78989999999999999999997 778


Q ss_pred             ccccCCCCCCEEeCCCCcCCccCccccccCCC-CCEEeccCCcccCCCCCC
Q 040815          157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTF-LEFFNVSDNYLTGPIPQG  206 (305)
Q Consensus       157 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~l~~N~l~~~~p~~  206 (305)
                      ..|+.+++|++|+|++|.+++.+|..+..+.. +..+++++|.++|.+|..
T Consensus       310 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~  360 (727)
T 4b8c_D          310 WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE  360 (727)
T ss_dssp             SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence            88999999999999999999888887754321 223667777777777653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=4.5e-18  Score=137.77  Aligned_cols=152  Identities=13%  Similarity=0.120  Sum_probs=126.3

Q ss_pred             cCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEc
Q 040815           43 GTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIIL  122 (305)
Q Consensus        43 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~l  122 (305)
                      ..+++|+.|++++|.++...  .  +..+++|++|++++|.+. .++.  +..                  ++.|+.|++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~--~--l~~l~~L~~L~l~~n~~~-~~~~--l~~------------------l~~L~~L~l   95 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT--G--IEYAHNIKDLTINNIHAT-NYNP--ISG------------------LSNLERLRI   95 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT--T--GGGCTTCSEEEEESCCCS-CCGG--GTT------------------CTTCCEEEE
T ss_pred             hhcCCccEEeccCCCccChH--H--HhcCCCCCEEEccCCCCC-cchh--hhc------------------CCCCCEEEe
Confidence            56789999999999998543  2  377899999999999776 4431  332                  556888999


Q ss_pred             cCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCc-CCccCccccccCCCCCEEeccCCcccC
Q 040815          123 SNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKK-FAGRIPQQLVELTFLEFFNVSDNYLTG  201 (305)
Q Consensus       123 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~~  201 (305)
                      ++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|. ++ .+| .+..+++|++|++++|.+++
T Consensus        96 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A           96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             ECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC
T ss_pred             ECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC
Confidence            9999998788899999999999999999998888899999999999999998 55 666 68899999999999999985


Q ss_pred             CCCCCCCCCccCCCccCCCCC
Q 040815          202 PIPQGKQFATFDNTSFDGNSG  222 (305)
Q Consensus       202 ~~p~~~~~~~l~~~~~~~n~~  222 (305)
                       ++....++.+..+.+.+|+.
T Consensus       174 -~~~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          174 -YRGIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             -CTTGGGCSSCCEEEECBC--
T ss_pred             -hHHhccCCCCCEEEeeCccc
Confidence             45555677788888888863

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.75  E-value=5.8e-18  Score=136.66  Aligned_cols=131  Identities=22%  Similarity=0.223  Sum_probs=98.8

Q ss_pred             CEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccc
Q 040815           49 NVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFV  128 (305)
Q Consensus        49 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~  128 (305)
                      +++++++|.++.+. ..+    .++|+.|++++|.++ .+|. .|..                  ++.|+.|++++|.++
T Consensus        13 ~~l~~~~~~l~~ip-~~~----~~~l~~L~L~~n~i~-~ip~-~~~~------------------l~~L~~L~Ls~N~i~   67 (193)
T 2wfh_A           13 TVVRCSNKGLKVLP-KGI----PRDVTELYLDGNQFT-LVPK-ELSN------------------YKHLTLIDLSNNRIS   67 (193)
T ss_dssp             TEEECTTSCCSSCC-SCC----CTTCCEEECCSSCCC-SCCG-GGGG------------------CTTCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCcCC-CCC----CCCCCEEECCCCcCc-hhHH-Hhhc------------------ccCCCEEECCCCcCC
Confidence            45666666665432 211    246777777777776 6663 2433                  344666667777777


Q ss_pred             cccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCC
Q 040815          129 GAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIP  204 (305)
Q Consensus       129 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  204 (305)
                      +..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|.++...+..+..+++|+.|++++|++.+...
T Consensus        68 ~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           68 TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             EeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence            6667778889999999999999998888889999999999999999996666678889999999999999987654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.74  E-value=8e-18  Score=129.97  Aligned_cols=128  Identities=24%  Similarity=0.254  Sum_probs=77.4

Q ss_pred             CCCCcEEeCCCcccC-CCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchh
Q 040815           21 CSKLEFLGLGNYQIS-DTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAM   99 (305)
Q Consensus        21 l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L   99 (305)
                      .++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+  ..+++|++|++++|.+++             
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~--~~l~~L~~L~Ls~n~i~~-------------   78 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANL--PKLNKLKKLELSDNRVSG-------------   78 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTC--CCCTTCCEEECCSSCCCS-------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhh--hcCCCCCEEECCCCcccc-------------
Confidence            467777788877776 56677777777777777777777655  222  566677777777776663             


Q ss_pred             hhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccccc-CCccccCCCCCCEEeCCCCcCCcc
Q 040815          100 KIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGL-IPSSLGNLTNLESLDLSNKKFAGR  178 (305)
Q Consensus       100 ~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~  178 (305)
                                                    .+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++.
T Consensus        79 ------------------------------~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~  128 (149)
T 2je0_A           79 ------------------------------GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL  128 (149)
T ss_dssp             ------------------------------CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred             ------------------------------hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence                                          2333444455555555555555542 224455555666666666655544


Q ss_pred             Cc---cccccCCCCCEEecc
Q 040815          179 IP---QQLVELTFLEFFNVS  195 (305)
Q Consensus       179 ~p---~~~~~l~~L~~L~l~  195 (305)
                      .+   ..+..+++|++||++
T Consensus       129 ~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          129 NDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTHHHHHHHHCTTCCEETTB
T ss_pred             HHHHHHHHHHCCCcccccCC
Confidence            33   345556666666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.74  E-value=3.3e-18  Score=134.90  Aligned_cols=130  Identities=25%  Similarity=0.289  Sum_probs=97.9

Q ss_pred             CEEEccCCccc-cccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEc
Q 040815            1 MEAKRSHNLFE-GRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L   79 (305)
                      ++|+|++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.++..+  ..+++|+.|++
T Consensus        27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L  102 (168)
T 2ell_A           27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA--EKLPNLTHLNL  102 (168)
T ss_dssp             SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH--HHCTTCCEEEC
T ss_pred             CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH--hhCCCCCEEec
Confidence            57999999998 78898899999999999999999876  778999999999999999988655444  55888999999


Q ss_pred             cCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC---
Q 040815           80 SNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP---  156 (305)
Q Consensus        80 ~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---  156 (305)
                      ++|.++ .+|.                                         +..+..+++|+.|++++|.+++..+   
T Consensus       103 s~N~l~-~~~~-----------------------------------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~  140 (168)
T 2ell_A          103 SGNKLK-DIST-----------------------------------------LEPLKKLECLKSLDLFNCEVTNLNDYRE  140 (168)
T ss_dssp             BSSSCC-SSGG-----------------------------------------GGGGSSCSCCCEEECCSSGGGTSTTHHH
T ss_pred             cCCccC-cchh-----------------------------------------HHHHhcCCCCCEEEeeCCcCcchHHHHH
Confidence            888887 4331                                         1234455566666666666664433   


Q ss_pred             ccccCCCCCCEEeCCCCcCC
Q 040815          157 SSLGNLTNLESLDLSNKKFA  176 (305)
Q Consensus       157 ~~~~~l~~L~~L~L~~N~l~  176 (305)
                      ..+..+++|++|++++|.+.
T Consensus       141 ~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          141 SVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             HHHTTCSSCCEETTEETTSC
T ss_pred             HHHHhCccCcEecCCCCChh
Confidence            25566666666666666655

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.73  E-value=7.5e-17  Score=128.19  Aligned_cols=133  Identities=22%  Similarity=0.231  Sum_probs=76.5

Q ss_pred             CcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhh
Q 040815           24 LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVN  103 (305)
Q Consensus        24 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~  103 (305)
                      .+.+++++|+++ .+|..+  .++|++|++++|.+++..+..+  ..+++|++|++++|.++ .+|...           
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~-~~~~~~-----------   71 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVF--DKLTQLTKLSLSQNQIQ-SLPDGV-----------   71 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTT--TTCTTCSEEECCSSCCC-CCCTTT-----------
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHh--cCcccccEEECCCCcce-EeChhH-----------
Confidence            466777777775 345433  3678888888888876655544  66778888888888776 444332           


Q ss_pred             hccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCcccc
Q 040815          104 ARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQL  183 (305)
Q Consensus       104 l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  183 (305)
                                                     +..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+
T Consensus        72 -------------------------------~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  120 (177)
T 2o6r_A           72 -------------------------------FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF  120 (177)
T ss_dssp             -------------------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             -------------------------------ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh
Confidence                                           2334445555555555554444444455555555555555553333334


Q ss_pred             ccCCCCCEEeccCCcccCCCC
Q 040815          184 VELTFLEFFNVSDNYLTGPIP  204 (305)
Q Consensus       184 ~~l~~L~~L~l~~N~l~~~~p  204 (305)
                      ..+++|++|++++|++++.+|
T Consensus       121 ~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          121 DRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCcccCEEEecCCCeeccCc
Confidence            445555555555555554443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.73  E-value=4.9e-17  Score=129.29  Aligned_cols=132  Identities=20%  Similarity=0.222  Sum_probs=109.7

Q ss_pred             ccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccc
Q 040815           74 LRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG  153 (305)
Q Consensus        74 L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  153 (305)
                      .+.+++++|++. .+|...                     ++.++.|++++|.+++..+..+..+++|++|++++|.+++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~---------------------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~   66 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI---------------------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS   66 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC---------------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred             CCEEEecCCCCc-cCCCCC---------------------CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE
Confidence            467777777777 666431                     3457788888888886666678899999999999999997


Q ss_pred             cCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCCCCCC
Q 040815          154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKP  227 (305)
Q Consensus       154 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~  227 (305)
                      ..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+.. ..+..+..+.+.+|++.|+|+
T Consensus        67 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           67 LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             eChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            77777899999999999999999877777899999999999999999655543 456788889999999999876

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.72  E-value=1.3e-17  Score=128.82  Aligned_cols=81  Identities=25%  Similarity=0.233  Sum_probs=71.2

Q ss_pred             CEEEccCCccc-cccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEc
Q 040815            1 MEAKRSHNLFE-GRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L   79 (305)
                      ++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+  ..+++|++|++
T Consensus        20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~l   95 (149)
T 2je0_A           20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA--EKCPNLTHLNL   95 (149)
T ss_dssp             SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH--HHCTTCCEEEC
T ss_pred             eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh--hhCCCCCEEEC
Confidence            57999999999 78999999999999999999999876  778999999999999999988655444  56888999999


Q ss_pred             cCCcCc
Q 040815           80 SNNRFS   85 (305)
Q Consensus        80 ~~n~l~   85 (305)
                      ++|.++
T Consensus        96 s~N~i~  101 (149)
T 2je0_A           96 SGNKIK  101 (149)
T ss_dssp             TTSCCC
T ss_pred             CCCcCC
Confidence            988887

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=4e-20  Score=172.76  Aligned_cols=185  Identities=17%  Similarity=0.097  Sum_probs=127.2

Q ss_pred             cCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccch
Q 040815           19 INCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNA   98 (305)
Q Consensus        19 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~   98 (305)
                      ..+++|+.|+|++|+++ .+|..++.+++|+.|++++|......+.        .     +..+...+.+| ..+..+++
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~--------l-----l~~~~~~~~~~-~~l~~l~~  410 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL--------L-----MRALDPLLYEK-ETLQYFST  410 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH--------H-----HHHHCTGGGHH-HHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH--------H-----HHhcccccCCH-HHHHHHHh
Confidence            34556666666666664 4566666666666666654431000000        0     00011332333 34666666


Q ss_pred             hhhhh-hccc-------------cccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCC
Q 040815           99 MKIVN-ARRM-------------MTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTN  164 (305)
Q Consensus        99 L~~l~-l~~~-------------~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  164 (305)
                      |+.|+ +...             ....-....|+.|++++|.+++ +|. ++.+++|+.|+|++|.++ .+|..++.+++
T Consensus       411 L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~  487 (567)
T 1dce_A          411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRC  487 (567)
T ss_dssp             HHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred             cccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCC
Confidence            66665 2210             0000013468999999999995 676 999999999999999999 78999999999


Q ss_pred             CCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCC-CC-CCCCCccCCCccCCCCCC
Q 040815          165 LESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPI-PQ-GKQFATFDNTSFDGNSGL  223 (305)
Q Consensus       165 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~-~~~~~~l~~~~~~~n~~~  223 (305)
                      |+.|+|++|.+++ +| .+..+++|+.|++++|.+++.. |. ...++.+..+++.+|+..
T Consensus       488 L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          488 LEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             CCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            9999999999996 77 8999999999999999999875 54 356777888888898753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=1.2e-17  Score=160.55  Aligned_cols=154  Identities=23%  Similarity=0.198  Sum_probs=107.4

Q ss_pred             EEccCCcccc---------ccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCC
Q 040815            3 AKRSHNLFEG---------RIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSK   73 (305)
Q Consensus         3 L~Ls~n~l~~---------~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~   73 (305)
                      ++|+.|.|.+         ..++.+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..+  ..+++
T Consensus       196 l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l~~  271 (727)
T 4b8c_D          196 KKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI--KNLSN  271 (727)
T ss_dssp             --------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG--GGGTT
T ss_pred             CccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh--hCCCC
Confidence            4555555543         45778899999999999999997 67777779999999999999998 555555  88999


Q ss_pred             ccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccc
Q 040815           74 LRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG  153 (305)
Q Consensus        74 L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  153 (305)
                      |++|+|++|.++ .+|.. |..                  +..|+.|+|++|.++ .+|..|+.+++|+.|+|++|.+++
T Consensus       272 L~~L~Ls~N~l~-~lp~~-~~~------------------l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          272 LRVLDLSHNRLT-SLPAE-LGS------------------CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             CCEEECTTSCCS-SCCSS-GGG------------------GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CCEEeCcCCcCC-ccChh-hcC------------------CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence            999999999999 88865 444                  345777778888887 778888888999999999999888


Q ss_pred             cCCccccCCCC-CCEEeCCCCcCCccCcc
Q 040815          154 LIPSSLGNLTN-LESLDLSNKKFAGRIPQ  181 (305)
Q Consensus       154 ~~p~~~~~l~~-L~~L~L~~N~l~~~~p~  181 (305)
                      .+|..+..+.. +..++|++|.+++.+|.
T Consensus       331 ~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          331 QFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             CChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            87776643211 12345566666655554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.68  E-value=1.6e-16  Score=126.28  Aligned_cols=68  Identities=18%  Similarity=0.255  Sum_probs=47.3

Q ss_pred             hccCCCCCcEEeCCCcccCCCcChhccCC-CCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChh
Q 040815           17 SLINCSKLEFLGLGNYQISDTFPSWLGTL-PKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSK   91 (305)
Q Consensus        17 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~   91 (305)
                      .+.++.+|+.|++++|+++. +|. +..+ ++|++|++++|.+++.  ..+  ..+++|++|++++|.++ .+|+.
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l--~~l~~L~~L~Ls~N~l~-~~~~~   82 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGF--PLLRRLKTLLVNNNRIC-RIGEG   82 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCC--CCCSSCCEEECCSSCCC-EECSC
T ss_pred             hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--ccc--ccCCCCCEEECCCCccc-ccCcc
Confidence            45677888888888888874 454 4444 4888888888888765  233  66777888888887777 45543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.66  E-value=1.2e-18  Score=141.35  Aligned_cols=155  Identities=20%  Similarity=0.253  Sum_probs=124.6

Q ss_pred             ccCCCCCcEEeCCCcccCCCcCh------hccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChh
Q 040815           18 LINCSKLEFLGLGNYQISDTFPS------WLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSK   91 (305)
Q Consensus        18 l~~l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~   91 (305)
                      +.....++.++++.+.+++..|.      .+..+++|++|++++|.+++. | .  +..+++|+.|++++|.++ .+|..
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~-~--~~~l~~L~~L~l~~n~l~-~l~~~   88 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S-S--LSGMENLRILSLGRNLIK-KIENL   88 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-C-C--HHHHTTCCEEEEEEEEEC-SCSSH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-c-c--cccCCCCCEEECCCCCcc-cccch
Confidence            55667888888888888887776      888999999999999999874 3 3  378899999999999998 77753


Q ss_pred             hhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC-ccccCCCCCCEEeC
Q 040815           92 SFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP-SSLGNLTNLESLDL  170 (305)
Q Consensus        92 ~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L  170 (305)
                       +..                  ++.|+.|++++|.+++ +| .+..+++|+.|++++|.+++..+ ..+..+++|++|++
T Consensus        89 -~~~------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l  147 (198)
T 1ds9_A           89 -DAV------------------ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL  147 (198)
T ss_dssp             -HHH------------------HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred             -hhc------------------CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEe
Confidence             332                  3457888899999985 55 68889999999999999985432 46889999999999


Q ss_pred             CCCcCCccCccc----------cccCCCCCEEeccCCccc
Q 040815          171 SNKKFAGRIPQQ----------LVELTFLEFFNVSDNYLT  200 (305)
Q Consensus       171 ~~N~l~~~~p~~----------~~~l~~L~~L~l~~N~l~  200 (305)
                      ++|.+++.+|..          +..+++|+.||  +|.++
T Consensus       148 ~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             CSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             cCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            999998776653          77899999987  66665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.66  E-value=5.3e-16  Score=122.50  Aligned_cols=111  Identities=20%  Similarity=0.246  Sum_probs=98.8

Q ss_pred             CccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccc
Q 040815           73 KLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQ  152 (305)
Q Consensus        73 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  152 (305)
                      ..+.+++++|.++ .+|...                     ++.++.|++++|.+++..|..|..+++|++|+|++|+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~---------------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~   67 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI---------------------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT   67 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC---------------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred             CCCEEEeCCCCcC-ccCccC---------------------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC
Confidence            4678999999998 788542                     356889999999999888999999999999999999999


Q ss_pred             ccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC
Q 040815          153 GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ  205 (305)
Q Consensus       153 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  205 (305)
                      +..+..|..+++|++|+|++|++++..+..+..+++|++|++++|++++..+.
T Consensus        68 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~  120 (170)
T 3g39_A           68 VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD  120 (170)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred             ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence            88777889999999999999999977777899999999999999999987664

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=8.3e-16  Score=134.31  Aligned_cols=197  Identities=13%  Similarity=0.062  Sum_probs=143.0

Q ss_pred             CEEEccCCccc--------------------cccchhccC--------CCCCcEEeCCCcccCCCcChhccCCCCCCEEE
Q 040815            1 MEAKRSHNLFE--------------------GRIPRSLIN--------CSKLEFLGLGNYQISDTFPSWLGTLPKLNVLI   52 (305)
Q Consensus         1 ~~L~Ls~n~l~--------------------~~~~~~l~~--------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~   52 (305)
                      ++|||++|++.                    .....+|.+        +++|+.++|++ .++.+.+.+|.++++|+.|+
T Consensus        52 ~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~  130 (329)
T 3sb4_A           52 KVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQ  130 (329)
T ss_dssp             CEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEE
T ss_pred             eEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEE
Confidence            57999999988                    223346777        89999999988 77766677888899999999


Q ss_pred             ccCccCCcccCCCCCCCCCCCccEEEccCCcCc---ccCChhhhhccchhh--------------------------hhh
Q 040815           53 LRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFS---GNLPSKSFLCWNAMK--------------------------IVN  103 (305)
Q Consensus        53 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~---g~~p~~~~~~l~~L~--------------------------~l~  103 (305)
                      +++|.+..+.+..|  ..+.++..+.+..+...   ..+...+|..+..|+                          .+.
T Consensus       131 l~~n~i~~i~~~aF--~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~  208 (329)
T 3sb4_A          131 IRKKTAPNLLPEAL--ADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLT  208 (329)
T ss_dssp             BCCSSCCEECTTSS--CTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEE
T ss_pred             cCCCCccccchhhh--cCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEE
Confidence            99998877766666  66666776666553210   022222232222222                          111


Q ss_pred             hccc------cccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCC-EEeCCCCcCC
Q 040815          104 ARRM------MTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLE-SLDLSNKKFA  176 (305)
Q Consensus       104 l~~~------~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~  176 (305)
                      ....      ..+...++.|+.+++++|.++...+..|.++.+|+.++|++| ++...+.+|.++.+|+ .+++.+ .++
T Consensus       209 ~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~  286 (329)
T 3sb4_A          209 IEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT  286 (329)
T ss_dssp             EEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC
T ss_pred             EeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce
Confidence            1110      011123678999999999999666778999999999999998 7767778899999999 999998 777


Q ss_pred             ccCccccccCCCCCEEeccCCcccCC
Q 040815          177 GRIPQQLVELTFLEFFNVSDNYLTGP  202 (305)
Q Consensus       177 ~~~p~~~~~l~~L~~L~l~~N~l~~~  202 (305)
                      ...+.+|.++++|+.+++++|.++..
T Consensus       287 ~I~~~aF~~c~~L~~l~l~~n~i~~I  312 (329)
T 3sb4_A          287 AIEFGAFMGCDNLRYVLATGDKITTL  312 (329)
T ss_dssp             EECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred             EEchhhhhCCccCCEEEeCCCccCcc
Confidence            66778999999999999999998843

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=3.2e-16  Score=136.98  Aligned_cols=194  Identities=12%  Similarity=0.075  Sum_probs=134.9

Q ss_pred             CCCCcEEeCCCcccC--------------------CCcChhccC--------CCCCCEEEccCccCCcccCCCCCCCCCC
Q 040815           21 CSKLEFLGLGNYQIS--------------------DTFPSWLGT--------LPKLNVLILRSNIFYGVIEEPRTGCGFS   72 (305)
Q Consensus        21 l~~L~~L~L~~n~l~--------------------~~~p~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~~~l~   72 (305)
                      +++|+.|||++|++.                    ...+.+|.+        +++|+.|+|.+ .++.+.+..|  .+++
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF--~~~~  124 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF--KGCD  124 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT--TTCT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHh--hcCc
Confidence            889999999999997                    222346667        89999999999 8887776666  8899


Q ss_pred             CccEEEccCCcCcccCChhhhhccchhhhhhhccccc----------cCc--------------------------cccc
Q 040815           73 KLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMT----------YNK--------------------------IPDI  116 (305)
Q Consensus        73 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~----------~~~--------------------------~~~~  116 (305)
                      +|+.+++++|.+. .+++.+|..+.++..+.......          ...                          .+..
T Consensus       125 ~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~  203 (329)
T 3sb4_A          125 NLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRD  203 (329)
T ss_dssp             TCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred             ccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccc
Confidence            9999999999998 88888888877666555433100          000                          0222


Q ss_pred             ccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCC-EEecc
Q 040815          117 LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLE-FFNVS  195 (305)
Q Consensus       117 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~l~  195 (305)
                      +..+.+.++-...........+++|+.++|++|+++...+.+|.++.+|+++++.+| +....+.+|.++++|+ .+++.
T Consensus       204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~  282 (329)
T 3sb4_A          204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP  282 (329)
T ss_dssp             CSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEEC
T ss_pred             cceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEc
Confidence            333333332111111111123789999999999999777778999999999999998 7766777899999999 99999


Q ss_pred             CCcccCCCCCC--CCCCccCCCccCCCC
Q 040815          196 DNYLTGPIPQG--KQFATFDNTSFDGNS  221 (305)
Q Consensus       196 ~N~l~~~~p~~--~~~~~l~~~~~~~n~  221 (305)
                      + .++ .++..  .....+..+.+.+|.
T Consensus       283 ~-~l~-~I~~~aF~~c~~L~~l~l~~n~  308 (329)
T 3sb4_A          283 A-SVT-AIEFGAFMGCDNLRYVLATGDK  308 (329)
T ss_dssp             T-TCC-EECTTTTTTCTTEEEEEECSSC
T ss_pred             c-cce-EEchhhhhCCccCCEEEeCCCc
Confidence            8 565 33332  233445555554443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.64  E-value=4.5e-16  Score=123.59  Aligned_cols=134  Identities=19%  Similarity=0.179  Sum_probs=108.3

Q ss_pred             hccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEE
Q 040815           41 WLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGI  120 (305)
Q Consensus        41 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L  120 (305)
                      .+..+.+|+.|++++|.++.. +...  ...++|+.|++++|.++ .++  .+..                  ++.|+.|
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~~~~--~~~~~L~~L~Ls~N~l~-~~~--~l~~------------------l~~L~~L   69 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-ENLG--ATLDQFDAIDFSDNEIR-KLD--GFPL------------------LRRLKTL   69 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGG--GGTTCCSEEECCSSCCC-EEC--CCCC------------------CSSCCEE
T ss_pred             hcCCcCCceEEEeeCCCCchh-HHhh--hcCCCCCEEECCCCCCC-ccc--cccc------------------CCCCCEE
Confidence            456788999999999999865 3322  23349999999999998 442  1332                  5568889


Q ss_pred             EccCCccccccchhhhCCCCCCEEecCCccccccCCc--cccCCCCCCEEeCCCCcCCccCccc----cccCCCCCEEec
Q 040815          121 ILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPS--SLGNLTNLESLDLSNKKFAGRIPQQ----LVELTFLEFFNV  194 (305)
Q Consensus       121 ~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~l  194 (305)
                      ++++|.+++..+..+..+++|+.|++++|.++ .+|.  .+..+++|++|++++|.++ .+|..    +..+++|+.||+
T Consensus        70 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~  147 (176)
T 1a9n_A           70 LVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF  147 (176)
T ss_dssp             ECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred             ECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCC
Confidence            99999999655566689999999999999997 5565  7889999999999999998 55664    889999999999


Q ss_pred             cCCccc
Q 040815          195 SDNYLT  200 (305)
Q Consensus       195 ~~N~l~  200 (305)
                      ++|...
T Consensus       148 ~~n~~~  153 (176)
T 1a9n_A          148 QKVKLK  153 (176)
T ss_dssp             EECCHH
T ss_pred             CcCCHH
Confidence            999875

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.63  E-value=1.9e-15  Score=119.75  Aligned_cols=110  Identities=21%  Similarity=0.282  Sum_probs=96.6

Q ss_pred             ccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccc
Q 040815           74 LRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG  153 (305)
Q Consensus        74 L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  153 (305)
                      -+.+++++|.+. .+|...                     ++.|+.|++++|.+++..|..|..+++|+.|+|++|++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~---------------------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~   71 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGI---------------------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA   71 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCC---------------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CcEEEeCCCCCC-ccCCCc---------------------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc
Confidence            478999999997 888642                     3568999999999998889999999999999999999998


Q ss_pred             cCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC
Q 040815          154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ  205 (305)
Q Consensus       154 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  205 (305)
                      ..+..|..+++|++|+|++|++++..+..+..+++|++|++++|++.+..+.
T Consensus        72 i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~  123 (174)
T 2r9u_A           72 IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD  123 (174)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred             cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence            7677789999999999999999976666799999999999999999976543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.61  E-value=4.2e-18  Score=138.03  Aligned_cols=148  Identities=22%  Similarity=0.220  Sum_probs=119.6

Q ss_pred             EEEccCCccccccch------hccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCcc
Q 040815            2 EAKRSHNLFEGRIPR------SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLR   75 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~   75 (305)
                      .++++.+.++|.+|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++.. |..+  ..+++|+
T Consensus        22 ~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l-~~~~--~~~~~L~   96 (198)
T 1ds9_A           22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENLD--AVADTLE   96 (198)
T ss_dssp             CTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSC-SSHH--HHHHHCS
T ss_pred             CcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccc-cchh--hcCCcCC
Confidence            356777888887776      89999999999999999986 67 888999999999999999854 3333  5578999


Q ss_pred             EEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccc-hhhhCCCCCCEEecCCcccccc
Q 040815           76 IIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIP-ASIANLKGLQVLNLQYNNLQGL  154 (305)
Q Consensus        76 ~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~  154 (305)
                      .|++++|.++ .+|.  +..                  ++.|+.|++++|.+++..+ ..+..+++|+.|++++|.+++.
T Consensus        97 ~L~L~~N~l~-~l~~--~~~------------------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           97 ELWISYNQIA-SLSG--IEK------------------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEEEEEEECC-CHHH--HHH------------------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             EEECcCCcCC-cCCc--ccc------------------CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            9999999998 4552  433                  3457788899999984332 4788999999999999999877


Q ss_pred             CCcc----------ccCCCCCCEEeCCCCcCCc
Q 040815          155 IPSS----------LGNLTNLESLDLSNKKFAG  177 (305)
Q Consensus       155 ~p~~----------~~~l~~L~~L~L~~N~l~~  177 (305)
                      +|..          +..+++|+.||  +|.++.
T Consensus       156 ~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          156 YKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             cccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            6653          78899999998  676653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.60  E-value=3.6e-15  Score=117.71  Aligned_cols=108  Identities=23%  Similarity=0.244  Sum_probs=95.7

Q ss_pred             ccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccC
Q 040815          117 LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSD  196 (305)
Q Consensus       117 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~  196 (305)
                      .+.+++++|.++ .+|..+.  ++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            578999999998 6776653  8899999999999988899999999999999999999977777789999999999999


Q ss_pred             CcccCCCCC-CCCCCccCCCccCCCCCCCCCC
Q 040815          197 NYLTGPIPQ-GKQFATFDNTSFDGNSGLCGKP  227 (305)
Q Consensus       197 N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~  227 (305)
                      |.+++..+. ...+..+..+.+.+|++.|+|+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999976664 3567788899999999999985

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.57  E-value=9.6e-15  Score=115.68  Aligned_cols=108  Identities=22%  Similarity=0.242  Sum_probs=94.6

Q ss_pred             ccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccC
Q 040815          117 LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSD  196 (305)
Q Consensus       117 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~  196 (305)
                      -+.+++++|.++ .+|..+.  ++|+.|+|++|++++..|..|..+++|++|+|++|+|++..+..|..+++|++|++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            367899999997 7787664  8999999999999988899999999999999999999976666788999999999999


Q ss_pred             CcccCCCCC-CCCCCccCCCccCCCCCCCCCC
Q 040815          197 NYLTGPIPQ-GKQFATFDNTSFDGNSGLCGKP  227 (305)
Q Consensus       197 N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~  227 (305)
                      |.+++..+. ...+..+..+.+.+|++.|+|+
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            999966554 3567788889999999999875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.55  E-value=9.1e-17  Score=151.06  Aligned_cols=132  Identities=11%  Similarity=0.011  Sum_probs=71.2

Q ss_pred             CCCccEEEccCCcCcccCChhhhhccchhhhhhhccc---ccc------------CcccccccEEEccCCc--cccccch
Q 040815           71 FSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRM---MTY------------NKIPDILAGIILSNNR--FVGAIPA  133 (305)
Q Consensus        71 l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~---~~~------------~~~~~~L~~L~ls~n~--l~~~~p~  133 (305)
                      +++|+.|+++.|.+++..+......+++|+.|++...   ..+            ...++.|+.|+++++.  +++..+.
T Consensus       377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~  456 (592)
T 3ogk_B          377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS  456 (592)
T ss_dssp             CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred             CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence            4555555555555554333332223455555555310   000            1124566666665432  4444444


Q ss_pred             hhh-CCCCCCEEecCCccccc-cCCccccCCCCCCEEeCCCCcCCcc-CccccccCCCCCEEeccCCcccCC
Q 040815          134 SIA-NLKGLQVLNLQYNNLQG-LIPSSLGNLTNLESLDLSNKKFAGR-IPQQLVELTFLEFFNVSDNYLTGP  202 (305)
Q Consensus       134 ~~~-~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~  202 (305)
                      .+. .+++|+.|++++|.+++ .++..+..+++|++|++++|.+++. ++..+..+++|++|++++|+++..
T Consensus       457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            443 36677777777777664 2334446667777777777776544 333345567777777777776643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.51  E-value=4.8e-14  Score=123.88  Aligned_cols=106  Identities=18%  Similarity=0.161  Sum_probs=57.9

Q ss_pred             EEccCC-ccccccchhhhCCCCCCEEecCC-ccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCC
Q 040815          120 IILSNN-RFVGAIPASIANLKGLQVLNLQY-NNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDN  197 (305)
Q Consensus       120 L~ls~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N  197 (305)
                      ++++++ .++ .+|. +..+++|+.|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|..+++|++|+|++|
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            345555 555 3555 55555666666654 5665555555556666666666666666555555556666666666666


Q ss_pred             cccCCCCCCCCCCccCCCccCCCCCCCCCC
Q 040815          198 YLTGPIPQGKQFATFDNTSFDGNSGLCGKP  227 (305)
Q Consensus       198 ~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~  227 (305)
                      +|++..+.......+..+.+.+|++.|+|.
T Consensus        91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             ccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence            665433332222224555555666665553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.50  E-value=1.8e-15  Score=142.15  Aligned_cols=36  Identities=11%  Similarity=0.099  Sum_probs=21.4

Q ss_pred             CCCCccEEEccCCcCcccCChhhhhccchhhhhhhc
Q 040815           70 GFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNAR  105 (305)
Q Consensus        70 ~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~  105 (305)
                      .+++|+.|++++|.+++......+..+++|+.|++.
T Consensus       291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            456777778877776543333334556666666553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.47  E-value=8.8e-14  Score=122.21  Aligned_cols=108  Identities=16%  Similarity=0.162  Sum_probs=92.0

Q ss_pred             cEEEccCC-cCcccCChhhhhccchhhhhhhccccccCcccccccEEEccC-CccccccchhhhCCCCCCEEecCCcccc
Q 040815           75 RIIDLSNN-RFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSN-NRFVGAIPASIANLKGLQVLNLQYNNLQ  152 (305)
Q Consensus        75 ~~L~L~~n-~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  152 (305)
                      ..++++++ +++ .+|.  +..                  +.+|+.|+|++ |.+++..+..|..+++|+.|+|++|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~--l~~------------------~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~   69 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH--LPG------------------AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR   69 (347)
T ss_dssp             SCEECCSSCCCT-TTTT--SCS------------------CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC
T ss_pred             CEEEcCCCCCCC-ccCC--CCC------------------CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc
Confidence            45688887 888 7885  443                  34588888996 9999888889999999999999999999


Q ss_pred             ccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCC
Q 040815          153 GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIP  204 (305)
Q Consensus       153 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  204 (305)
                      +..|..|.++++|++|+|++|+|++..+..+..++ |+.|++++|.|.+...
T Consensus        70 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           70 FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             eeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence            99999999999999999999999976666666665 9999999999987643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.47  E-value=2.2e-15  Score=133.72  Aligned_cols=166  Identities=17%  Similarity=0.121  Sum_probs=117.3

Q ss_pred             CCCCcEEeCCCcccCCCcChhcc-----CCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhc
Q 040815           21 CSKLEFLGLGNYQISDTFPSWLG-----TLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLC   95 (305)
Q Consensus        21 l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~   95 (305)
                      +++|+.|+|++|.++......+.     ..++|++|+|++|.++......+ ...+++|+.|+|++|.++ ......+..
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l-~~~L~~L~~L~Ls~n~l~-~~~~~~L~~  148 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL-LPVFLRARKLGLQLNSLG-PEACKDLRD  148 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT-HHHHHTEEEEECCSSCCC-HHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH-HHHHHhccHhhcCCCCCC-HHHHHHHHH
Confidence            46899999999998754443333     23689999999998864322111 123568999999999887 222111211


Q ss_pred             cchhhhhhhccccccCcccccccEEEccCCccccc----cchhhhCCCCCCEEecCCcccccc----CCccccCCCCCCE
Q 040815           96 WNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGA----IPASIANLKGLQVLNLQYNNLQGL----IPSSLGNLTNLES  167 (305)
Q Consensus        96 l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~  167 (305)
                      .  +           ......|+.|+|++|.++..    ++..+..+++|++|+|++|.+++.    ++..+...++|++
T Consensus       149 ~--L-----------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~  215 (372)
T 3un9_A          149 L--L-----------LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE  215 (372)
T ss_dssp             H--H-----------HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCE
T ss_pred             H--H-----------HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCe
Confidence            0  0           01135699999999998743    455567889999999999998753    3456677889999


Q ss_pred             EeCCCCcCCcc----CccccccCCCCCEEeccCCcccC
Q 040815          168 LDLSNKKFAGR----IPQQLVELTFLEFFNVSDNYLTG  201 (305)
Q Consensus       168 L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~  201 (305)
                      |+|++|.+++.    ++..+...+.|++||+++|.++.
T Consensus       216 L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          216 LNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             EECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             EECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            99999999864    34445567899999999999873

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.45  E-value=2.7e-15  Score=133.13  Aligned_cols=185  Identities=14%  Similarity=0.062  Sum_probs=124.2

Q ss_pred             CEEEccCCccccccchhccC-----CCCCcEEeCCCcccCCCcChhcc-CCCCCCEEEccCccCCcccCCCCC--C-CCC
Q 040815            1 MEAKRSHNLFEGRIPRSLIN-----CSKLEFLGLGNYQISDTFPSWLG-TLPKLNVLILRSNIFYGVIEEPRT--G-CGF   71 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~--~-~~l   71 (305)
                      ++|+|++|.++......+..     .++|++|+|++|.++......+. .+++|+.|+|++|.++......+.  + ...
T Consensus        75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~  154 (372)
T 3un9_A           75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQ  154 (372)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTT
T ss_pred             CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcC
Confidence            57999999998654444333     37999999999999754333333 467899999999998653222210  0 235


Q ss_pred             CCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccc----cchhhhCCCCCCEEecC
Q 040815           72 SKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGA----IPASIANLKGLQVLNLQ  147 (305)
Q Consensus        72 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~Ls  147 (305)
                      +.|+.|+|++|.++ ......+..  .+.            ..+.|++|+|++|.++..    ++..+...++|+.|+|+
T Consensus       155 ~~L~~L~Ls~n~l~-~~~~~~l~~--~L~------------~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls  219 (372)
T 3un9_A          155 CQITTLRLSNNPLT-AAGVAVLME--GLA------------GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA  219 (372)
T ss_dssp             CCCCEEECCSSCCH-HHHHHHHHH--HHH------------TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred             CccceeeCCCCCCC-hHHHHHHHH--HHh------------cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence            78999999999987 221111110  011            145699999999999753    35667778899999999


Q ss_pred             Ccccccc----CCccccCCCCCCEEeCCCCcCCccCccccccCCC-----CCEEe--ccCCccc
Q 040815          148 YNNLQGL----IPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTF-----LEFFN--VSDNYLT  200 (305)
Q Consensus       148 ~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-----L~~L~--l~~N~l~  200 (305)
                      +|.++..    +...+...++|++|||++|.|++.....+..+..     |+.+.  +..|.++
T Consensus       220 ~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             SSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             CCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            9999853    3344556789999999999998765555544321     55555  5555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.44  E-value=2e-15  Score=141.85  Aligned_cols=85  Identities=14%  Similarity=0.159  Sum_probs=45.1

Q ss_pred             cccccEEEccCCccccccchhhhC-CCCCCEEecCCccccccCCccc-cCCCCCCEEeCCCCcCCccCcc-ccccCCCCC
Q 040815          114 PDILAGIILSNNRFVGAIPASIAN-LKGLQVLNLQYNNLQGLIPSSL-GNLTNLESLDLSNKKFAGRIPQ-QLVELTFLE  190 (305)
Q Consensus       114 ~~~L~~L~ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~  190 (305)
                      ++.|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|++|++++|.+++.... ....+++|+
T Consensus       431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  509 (594)
T 2p1m_B          431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR  509 (594)
T ss_dssp             CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred             CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence            34566666655 444443444433 5566666666666654433333 4456666666666666433322 233356666


Q ss_pred             EEeccCCcc
Q 040815          191 FFNVSDNYL  199 (305)
Q Consensus       191 ~L~l~~N~l  199 (305)
                      +|++++|++
T Consensus       510 ~L~l~~~~~  518 (594)
T 2p1m_B          510 SLWMSSCSV  518 (594)
T ss_dssp             EEEEESSCC
T ss_pred             EEeeeCCCC
Confidence            666666655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.42  E-value=3e-12  Score=114.58  Aligned_cols=205  Identities=9%  Similarity=0.060  Sum_probs=152.0

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN   81 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~   81 (305)
                      .++|..+ ++..-..+|.++ +|+.+++.+ .+...-+.+|.++++|+.+++.+|.++.+....|  . ..+|+.+.+.+
T Consensus       139 ~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF--~-~~~L~~l~lp~  212 (401)
T 4fdw_A          139 KVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF--V-YAGIEEVLLPV  212 (401)
T ss_dssp             EEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT--T-TCCCSEEECCT
T ss_pred             EEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhE--e-ecccCEEEeCC
Confidence            4666665 665566788874 799999986 6666667789999999999999999987766666  3 58999999985


Q ss_pred             CcCcccCChhhhhccchhhhhhhccccc-----cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccc----
Q 040815           82 NRFSGNLPSKSFLCWNAMKIVNARRMMT-----YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQ----  152 (305)
Q Consensus        82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~-----~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~----  152 (305)
                      + +. .++..+|.++.+|+.+++.....     .... ..|+.+.+ .+.++..-..+|.++++|+.+++.+|.+.    
T Consensus       213 ~-l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~  288 (401)
T 4fdw_A          213 T-LK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPE  288 (401)
T ss_dssp             T-CC-EECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTT
T ss_pred             c-hh-eehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcc
Confidence            5 77 88999999999999888765211     1112 56888888 44566456778899999999999888765    


Q ss_pred             -ccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC--CCCCccCCCccCCC
Q 040815          153 -GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG--KQFATFDNTSFDGN  220 (305)
Q Consensus       153 -~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~l~~~~~~~n  220 (305)
                       ...+.+|.++++|+.+++.+ .++......|.++++|+.+++..| ++ .++..  ... .+..+.+.+|
T Consensus       289 ~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          289 AMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             CEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCS
T ss_pred             cEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCC
Confidence             35567899999999999984 477566678888999999999665 44 22222  112 4555556655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.39  E-value=6.7e-12  Score=112.33  Aligned_cols=179  Identities=13%  Similarity=0.131  Sum_probs=129.3

Q ss_pred             cccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCC
Q 040815           10 FEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLP   89 (305)
Q Consensus        10 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p   89 (305)
                      ++..-..+|.++ +|+.+++..+ ++..-..+|.+ .+|+.+.+.. .++.+....|  ..+++|+.+++++|.++ .++
T Consensus       124 i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF--~~c~~L~~l~l~~n~l~-~I~  196 (401)
T 4fdw_A          124 VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIF--YYCYNLKKADLSKTKIT-KLP  196 (401)
T ss_dssp             CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTT--TTCTTCCEEECTTSCCS-EEC
T ss_pred             cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHh--hCcccCCeeecCCCcce-Eec
Confidence            454445677775 7999998876 65555667777 4688998886 5666655566  78889999999988888 888


Q ss_pred             hhhhhccchhhhhhhccc-----cccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCC
Q 040815           90 SKSFLCWNAMKIVNARRM-----MTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTN  164 (305)
Q Consensus        90 ~~~~~~l~~L~~l~l~~~-----~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  164 (305)
                      ..+|. ..+|+.+.+...     ...+..+..|+.+++..| ++..-..+|.+ .+|+.+.+ .+.++.....+|.++++
T Consensus       197 ~~aF~-~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~  272 (401)
T 4fdw_A          197 ASTFV-YAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPE  272 (401)
T ss_dssp             TTTTT-TCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTT
T ss_pred             hhhEe-ecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCC
Confidence            88887 477777776542     122334677888888775 45344556666 78899988 45566566778888999


Q ss_pred             CCEEeCCCCcCC-----ccCccccccCCCCCEEeccCCccc
Q 040815          165 LESLDLSNKKFA-----GRIPQQLVELTFLEFFNVSDNYLT  200 (305)
Q Consensus       165 L~~L~L~~N~l~-----~~~p~~~~~l~~L~~L~l~~N~l~  200 (305)
                      |+.+++.+|.+.     ...+..|..+++|+.+++.+ .++
T Consensus       273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~  312 (401)
T 4fdw_A          273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR  312 (401)
T ss_dssp             CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC
T ss_pred             CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE
Confidence            999998887765     34556788888999998884 354

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.35  E-value=1.4e-13  Score=129.33  Aligned_cols=191  Identities=15%  Similarity=0.096  Sum_probs=94.8

Q ss_pred             CEEEccCCccccccchhcc-CCCCCcEEeCCCc-ccCCC-cChhccCCCCCCEEEccCccCCcccCCCC--CCCCCCCcc
Q 040815            1 MEAKRSHNLFEGRIPRSLI-NCSKLEFLGLGNY-QISDT-FPSWLGTLPKLNVLILRSNIFYGVIEEPR--TGCGFSKLR   75 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~l~~L~   75 (305)
                      ++|+|++|.+++..+..+. .+++|++|++++| .++.. ++..+..+++|++|+|++|.+++..+..+  ....+++|+
T Consensus       108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~  187 (594)
T 2p1m_B          108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV  187 (594)
T ss_dssp             CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCC
T ss_pred             CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCc
Confidence            3567777766665555554 5677777777766 44322 33333456777777777776554322111  113456777


Q ss_pred             EEEccCCcCcccCChhhh----hccchhhhhhhcccccc------CcccccccEEEccCCc-------------------
Q 040815           76 IIDLSNNRFSGNLPSKSF----LCWNAMKIVNARRMMTY------NKIPDILAGIILSNNR-------------------  126 (305)
Q Consensus        76 ~L~L~~n~l~g~~p~~~~----~~l~~L~~l~l~~~~~~------~~~~~~L~~L~ls~n~-------------------  126 (305)
                      .|++++|.  +.+....+    ..+++|+.|++.++...      ...++.|+.|+++.+.                   
T Consensus       188 ~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~  265 (594)
T 2p1m_B          188 SLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK  265 (594)
T ss_dssp             EEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCT
T ss_pred             EEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCC
Confidence            77777765  13332222    23356666665543111      1123445555543321                   


Q ss_pred             -------cc----cccchhhhCCCCCCEEecCCccccccCC-ccccCCCCCCEEeCCCCcCCcc-CccccccCCCCCEEe
Q 040815          127 -------FV----GAIPASIANLKGLQVLNLQYNNLQGLIP-SSLGNLTNLESLDLSNKKFAGR-IPQQLVELTFLEFFN  193 (305)
Q Consensus       127 -------l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~  193 (305)
                             +.    +.++..+..+++|++|+|++|.+++... ..+..+++|++|++++| ++.. ++.....+++|++|+
T Consensus       266 ~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~  344 (594)
T 2p1m_B          266 ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELR  344 (594)
T ss_dssp             TCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEE
T ss_pred             CcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEE
Confidence                   00    1122333345566666666666543221 12345566666666655 3221 222223456666666


Q ss_pred             c
Q 040815          194 V  194 (305)
Q Consensus       194 l  194 (305)
                      +
T Consensus       345 L  345 (594)
T 2p1m_B          345 V  345 (594)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.03  E-value=1.2e-10  Score=102.57  Aligned_cols=162  Identities=15%  Similarity=0.188  Sum_probs=96.0

Q ss_pred             hccCCCCCcEEeCCCcccC---------CCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCccc
Q 040815           17 SLINCSKLEFLGLGNYQIS---------DTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGN   87 (305)
Q Consensus        17 ~l~~l~~L~~L~L~~n~l~---------~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~   87 (305)
                      +...+++|+.|.+.++...         +.+...+..+++|+.|+|++|.-... + .+   .+++|+.|++..+.+.. 
T Consensus       134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l-~-~~---~~~~L~~L~L~~~~l~~-  207 (362)
T 2ra8_A          134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI-G-KK---PRPNLKSLEIISGGLPD-  207 (362)
T ss_dssp             THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC-C-SC---BCTTCSEEEEECSBCCH-
T ss_pred             hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee-c-cc---cCCCCcEEEEecCCCCh-
Confidence            4556789999988765331         12344556789999999988731111 1 12   37899999998876652 


Q ss_pred             CChhhhhccchhhhhhhccccccCcccccccEEEccC--Cccccc-----cchhh--hCCCCCCEEecCCccccccCCcc
Q 040815           88 LPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSN--NRFVGA-----IPASI--ANLKGLQVLNLQYNNLQGLIPSS  158 (305)
Q Consensus        88 ~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~--n~l~~~-----~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~  158 (305)
                         ..+..+   ..          ..+++|+.|+|+.  |...+.     +...+  ..+++|+.|+|++|.+.+..+..
T Consensus       208 ---~~l~~l---~~----------~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~  271 (362)
T 2ra8_A          208 ---SVVEDI---LG----------SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM  271 (362)
T ss_dssp             ---HHHHHH---HH----------SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred             ---HHHHHH---HH----------ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence               211111   00          0144566666642  211111     11112  24678888888888776443333


Q ss_pred             cc---CCCCCCEEeCCCCcCCcc----CccccccCCCCCEEeccCCccc
Q 040815          159 LG---NLTNLESLDLSNKKFAGR----IPQQLVELTFLEFFNVSDNYLT  200 (305)
Q Consensus       159 ~~---~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~  200 (305)
                      +.   .+++|++|+|+.|.+++.    ++..+..+++|+.|++++|.++
T Consensus       272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            32   467888888888888764    2333455678888888888775

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.74  E-value=1e-07  Score=84.99  Aligned_cols=62  Identities=16%  Similarity=0.072  Sum_probs=45.3

Q ss_pred             hhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCC
Q 040815          134 SIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDN  197 (305)
Q Consensus       134 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N  197 (305)
                      .|..+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....+|.++.+|+.+++..|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            3556777888888654 55455667888889999988654 65455667888888888888765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.73  E-value=6.1e-09  Score=82.89  Aligned_cols=66  Identities=21%  Similarity=0.199  Sum_probs=36.0

Q ss_pred             hhCCCCCCEEecCCcccccc----CCccccCCCCCCEEeC--CCCcCCcc----CccccccCCCCCEEeccCCccc
Q 040815          135 IANLKGLQVLNLQYNNLQGL----IPSSLGNLTNLESLDL--SNKKFAGR----IPQQLVELTFLEFFNVSDNYLT  200 (305)
Q Consensus       135 ~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L--~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~  200 (305)
                      +...+.|++|+|++|.|...    +..++...++|++|+|  ++|.++..    +...+...+.|++|++++|.+.
T Consensus        89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            33445566666666665532    2334455556666666  55666543    2233444566677777666653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.71  E-value=4.1e-09  Score=88.43  Aligned_cols=83  Identities=20%  Similarity=0.187  Sum_probs=62.8

Q ss_pred             cCCCCCcEEeCCCcccCC--CcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCCh------
Q 040815           19 INCSKLEFLGLGNYQISD--TFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPS------   90 (305)
Q Consensus        19 ~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~------   90 (305)
                      .++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|.|++... ...+..+ +|+.|+|++|.+.+.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence            568999999999999997  456777889999999999999987621 1112334 999999999999977773      


Q ss_pred             hhhhccchhhhhh
Q 040815           91 KSFLCWNAMKIVN  103 (305)
Q Consensus        91 ~~~~~l~~L~~l~  103 (305)
                      ..+..+++|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2345555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.66  E-value=2.9e-08  Score=83.24  Aligned_cols=82  Identities=27%  Similarity=0.268  Sum_probs=52.3

Q ss_pred             EEccCCccccccch----hhhCCCCCCEEecCCccccc--cCCccccCCCCCCEEeCCCCcCCccCccccccCC--CCCE
Q 040815          120 IILSNNRFVGAIPA----SIANLKGLQVLNLQYNNLQG--LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELT--FLEF  191 (305)
Q Consensus       120 L~ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~  191 (305)
                      ++++.|... .++.    ...++++|+.|+|++|.|++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|++
T Consensus       148 l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~  224 (267)
T 3rw6_A          148 IDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEE  224 (267)
T ss_dssp             CCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSE
T ss_pred             ccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcce
Confidence            556666432 2222    22456778888888888776  3445566777888888888877754  2233333  7778


Q ss_pred             EeccCCcccCCCC
Q 040815          192 FNVSDNYLTGPIP  204 (305)
Q Consensus       192 L~l~~N~l~~~~p  204 (305)
                      |++++|++++.+|
T Consensus       225 L~L~~Npl~~~~~  237 (267)
T 3rw6_A          225 LWLDGNSLCDTFR  237 (267)
T ss_dssp             EECTTSTTGGGCS
T ss_pred             EEccCCcCccccC
Confidence            8888888776555

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.65  E-value=1.9e-08  Score=88.48  Aligned_cols=168  Identities=13%  Similarity=0.101  Sum_probs=110.7

Q ss_pred             cchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC--CcCcccCChh
Q 040815           14 IPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN--NRFSGNLPSK   91 (305)
Q Consensus        14 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~--n~l~g~~p~~   91 (305)
                      +...+..+++|+.|+|++|.-. .++. + .+++|+.|+|..+.+.......+....+++|+.|+|+.  |...+...  
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~--  238 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD--  238 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC--
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchh--
Confidence            5566678899999999987311 2333 3 38899999999988754321122113689999999864  22211111  


Q ss_pred             hhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhh---CCCCCCEEecCCcccccc----CCccccCCCC
Q 040815           92 SFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIA---NLKGLQVLNLQYNNLQGL----IPSSLGNLTN  164 (305)
Q Consensus        92 ~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~  164 (305)
                       +..+.   .+      .....++.|+.|++.+|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++
T Consensus       239 -~~~l~---~~------l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~  308 (362)
T 2ra8_A          239 -MNVFR---PL------FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH  308 (362)
T ss_dssp             -GGGTG---GG------SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTT
T ss_pred             -HHHHH---HH------HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCc
Confidence             11111   10      0002367899999999998755444443   578999999999999864    3334456799


Q ss_pred             CCEEeCCCCcCCccCcccccc-CCCCCEEeccCCc
Q 040815          165 LESLDLSNKKFAGRIPQQLVE-LTFLEFFNVSDNY  198 (305)
Q Consensus       165 L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~l~~N~  198 (305)
                      |+.|+|++|.++...-..+.. +  ...++++.|.
T Consensus       309 L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          309 LKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             CSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             ceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            999999999988655444543 3  4668888876

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.62  E-value=3.7e-09  Score=84.20  Aligned_cols=62  Identities=18%  Similarity=0.193  Sum_probs=41.7

Q ss_pred             ccccEEEccCCccccc----cchhhhCCCCCCEEec--CCcccccc----CCccccCCCCCCEEeCCCCcCC
Q 040815          115 DILAGIILSNNRFVGA----IPASIANLKGLQVLNL--QYNNLQGL----IPSSLGNLTNLESLDLSNKKFA  176 (305)
Q Consensus       115 ~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~  176 (305)
                      +.|++|+|++|.+...    +...+...+.|++|+|  ++|.+...    +...+...++|++|+|++|.+.
T Consensus        93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            4466677777776643    3455566677888888  77887743    2334555678888888888775

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.50  E-value=1.9e-06  Score=76.64  Aligned_cols=101  Identities=17%  Similarity=0.302  Sum_probs=59.7

Q ss_pred             ccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEec
Q 040815          115 DILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNV  194 (305)
Q Consensus       115 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l  194 (305)
                      ..|+.+.+..+... .-...|.++..|+.+.+. +.++.....+|.++.+|+.+++..+ ++.....+|.++.+|+.+.+
T Consensus       265 ~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          265 AYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             SSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             ccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence            33455555433222 334456677778888875 4455455567888888888888754 55444567888888888888


Q ss_pred             cCCcccCCCCCC--CCCCccCCCccCCC
Q 040815          195 SDNYLTGPIPQG--KQFATFDNTSFDGN  220 (305)
Q Consensus       195 ~~N~l~~~~p~~--~~~~~l~~~~~~~n  220 (305)
                      ..+ ++ .+...  .....+..+.+.++
T Consensus       342 p~s-v~-~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          342 PSS-VT-KIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CTT-CC-BCCGGGGTTCTTCCEEEESSC
T ss_pred             Ccc-cC-EEhHhHhhCCCCCCEEEECCc
Confidence            644 43 33322  12234445555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.21  E-value=6.3e-06  Score=73.27  Aligned_cols=151  Identities=13%  Similarity=0.081  Sum_probs=71.3

Q ss_pred             chhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhh
Q 040815           15 PRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFL   94 (305)
Q Consensus        15 ~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~   94 (305)
                      ..+|.++.+|+.+.+..+ ++.+-..+|.++.+|+.+++.++ ++.+....|  ..+.+|+.+.+..+ +. .+...+|.
T Consensus        64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF--~~c~~L~~i~~p~~-l~-~i~~~aF~  137 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTF--SGCYALKSILLPLM-LK-SIGVEAFK  137 (394)
T ss_dssp             TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTT--TTCTTCCCCCCCTT-CC-EECTTTTT
T ss_pred             HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhh--cccccchhhcccCc-ee-eecceeee
Confidence            346667777777777643 54444556777777777777644 443433344  55666666655543 33 44445555


Q ss_pred             ccchhhhhhhcc----ccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeC
Q 040815           95 CWNAMKIVNARR----MMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDL  170 (305)
Q Consensus        95 ~l~~L~~l~l~~----~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  170 (305)
                      +...+.......    .......+..|+.+.+.++... .-...|.++.+|+.+++..| ++.....+|.++..|+.+.+
T Consensus       138 ~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~  215 (394)
T 4fs7_A          138 GCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF  215 (394)
T ss_dssp             TCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred             cccccccccCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence            443222111111    0111122344444444433211 22334444455555555443 22233334445555555444


Q ss_pred             CCC
Q 040815          171 SNK  173 (305)
Q Consensus       171 ~~N  173 (305)
                      ..+
T Consensus       216 ~~~  218 (394)
T 4fs7_A          216 PNS  218 (394)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.10  E-value=9.9e-07  Score=68.90  Aligned_cols=84  Identities=11%  Similarity=0.078  Sum_probs=66.6

Q ss_pred             ccccEEEccCCccccccchhhhCCCCCCEEecCCcc-ccccCCccccCC----CCCCEEeCCCCc-CCccCccccccCCC
Q 040815          115 DILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNN-LQGLIPSSLGNL----TNLESLDLSNKK-FAGRIPQQLVELTF  188 (305)
Q Consensus       115 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~~  188 (305)
                      ..|++||++++.++..--..+..+++|+.|+|++|. +++.--..+..+    ++|++|+|++|. +++.--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            358999999999886656667899999999999985 765433445554    479999999984 88655566788999


Q ss_pred             CCEEeccCCc
Q 040815          189 LEFFNVSDNY  198 (305)
Q Consensus       189 L~~L~l~~N~  198 (305)
                      |++|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999874

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.07  E-value=4.8e-05  Score=67.04  Aligned_cols=154  Identities=11%  Similarity=0.042  Sum_probs=99.6

Q ss_pred             hccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhcc
Q 040815           17 SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCW   96 (305)
Q Consensus        17 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l   96 (305)
                      .+.....+..+.+....- ......+....+|+.+.+..+ ++.+....+  ..+..|+.+.+..+ ++ .+...+|.++
T Consensus       189 ~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f--~~~~~L~~i~lp~~-v~-~I~~~aF~~~  262 (379)
T 4h09_A          189 SYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAF--YGMKALDEIAIPKN-VT-SIGSFLLQNC  262 (379)
T ss_dssp             ECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTT--TTCSSCCEEEECTT-CC-EECTTTTTTC
T ss_pred             ccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccc--cCCccceEEEcCCC-cc-EeCcccccee
Confidence            455566677766655432 234456667788888888655 333433444  67788888888765 55 6777777765


Q ss_pred             chhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCC
Q 040815           97 NAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFA  176 (305)
Q Consensus        97 ~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  176 (305)
                      .+|+.                  +.+..+ +...-...|.++.+|+.+.+.++.++.....+|.++.+|+.++|..+ ++
T Consensus       263 ~~l~~------------------i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~  322 (379)
T 4h09_A          263 TALKT------------------LNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK  322 (379)
T ss_dssp             TTCCE------------------EEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred             ehhcc------------------cccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc
Confidence            55443                  334332 33233455777788888888877777566677888888888888654 55


Q ss_pred             ccCccccccCCCCCEEeccC
Q 040815          177 GRIPQQLVELTFLEFFNVSD  196 (305)
Q Consensus       177 ~~~p~~~~~l~~L~~L~l~~  196 (305)
                      ..-..+|.++.+|+.+.+..
T Consensus       323 ~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          323 TIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             EECTTTTTTCTTCCCCCCCT
T ss_pred             EEHHHHhhCCCCCCEEEECC
Confidence            34455677778888777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.07  E-value=2.4e-05  Score=69.48  Aligned_cols=150  Identities=13%  Similarity=0.165  Sum_probs=92.9

Q ss_pred             CCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhh
Q 040815           21 CSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMK  100 (305)
Q Consensus        21 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~  100 (305)
                      ...+..+.+... ++..-..+|.++.+|+.+.+..+.. .+....|  ..++.|+.+.+. +.+. .++..+|.++.+|+
T Consensus       241 ~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF--~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~  314 (394)
T 4gt6_A          241 QREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV-SIGTGAF--MNCPALQDIEFS-SRIT-ELPESVFAGCISLK  314 (394)
T ss_dssp             TCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC-EECTTTT--TTCTTCCEEECC-TTCC-EECTTTTTTCTTCC
T ss_pred             ccccceEEcCCc-ceEcccceeeecccccEEecccccc-eecCccc--ccccccccccCC-Cccc-ccCceeecCCCCcC
Confidence            345555555433 3334456788888899888876543 2333344  778889998886 4466 78888887755544


Q ss_pred             hhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCc
Q 040815          101 IVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIP  180 (305)
Q Consensus       101 ~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  180 (305)
                                        .+++..+ ++..-..+|.++.+|+.+.+..+ ++.....+|.++.+|+.+++.++....   
T Consensus       315 ------------------~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---  371 (394)
T 4gt6_A          315 ------------------SIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---  371 (394)
T ss_dssp             ------------------EEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---
T ss_pred             ------------------EEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---
Confidence                              4445433 44344567888889999988654 664556778899999999998875431   


Q ss_pred             cccccCCCCCEEeccCCcc
Q 040815          181 QQLVELTFLEFFNVSDNYL  199 (305)
Q Consensus       181 ~~~~~l~~L~~L~l~~N~l  199 (305)
                      ..+.....|+.+.+..|.+
T Consensus       372 ~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          372 NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             HTCBCCCCC----------
T ss_pred             hhhhccCCCCEEEeCCCCE
Confidence            3566677888887766544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.91  E-value=0.00016  Score=63.66  Aligned_cols=160  Identities=14%  Similarity=0.084  Sum_probs=107.9

Q ss_pred             ccchhccCCCCCcEEeCCCcccCC------------CcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815           13 RIPRSLINCSKLEFLGLGNYQISD------------TFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus        13 ~~~~~l~~l~~L~~L~L~~n~l~~------------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      .-..+|..+.+++...+..+....            .....+.....+..+.+....- ......+  .....|+.+.+.
T Consensus       149 i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f--~~~~~l~~i~~~  225 (379)
T 4h09_A          149 IKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK-TVTAYGF--SYGKNLKKITIT  225 (379)
T ss_dssp             ECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC-EECTTTT--TTCSSCSEEECC
T ss_pred             cccchhcccccccccccccccceeecccceecccccceecccccccccccccccccee-EEeeccc--ccccccceeeec
Confidence            345688889999998887654321            1222344455666666554322 2222233  567889998887


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG  160 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  160 (305)
                      .+ +. .+...+|.++..                  |+.+.+..+ ++..-...|.++.+|+.+.+..+ ++.....+|.
T Consensus       226 ~~-~~-~i~~~~f~~~~~------------------L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~  283 (379)
T 4h09_A          226 SG-VT-TLGDGAFYGMKA------------------LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCS  283 (379)
T ss_dssp             TT-CC-EECTTTTTTCSS------------------CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTT
T ss_pred             cc-ee-EEccccccCCcc------------------ceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccc
Confidence            65 44 566666665444                  455555544 44344567888899999999654 5545567899


Q ss_pred             CCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCC
Q 040815          161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDN  197 (305)
Q Consensus       161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N  197 (305)
                      ++.+|+.+++.++.++.....+|.++.+|+.+++..+
T Consensus       284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             cccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence            9999999999999888666778999999999999754

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.77  E-value=4.5e-06  Score=65.14  Aligned_cols=83  Identities=7%  Similarity=-0.009  Sum_probs=43.8

Q ss_pred             CCCcEEeCCCcccCCCcChhccCCCCCCEEEccCcc-CCcccCCCCCCCCC----CCccEEEccCCc-CcccCChhhhhc
Q 040815           22 SKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNI-FYGVIEEPRTGCGF----SKLRIIDLSNNR-FSGNLPSKSFLC   95 (305)
Q Consensus        22 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l----~~L~~L~L~~n~-l~g~~p~~~~~~   95 (305)
                      -.|+.||++++.|+..--..+..+++|+.|+|++|. ++...-..+  ..+    ++|+.|++++|. ++ .---..+..
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L--~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L~~  137 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL--SQLENLQKSMLEMEIISCGNVT-DKGIIALHH  137 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH--HTCHHHHHHCCEEEEESCTTCC-HHHHHHGGG
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH--HhcccccCCCCEEEcCCCCcCC-HHHHHHHhc
Confidence            356777777776665444445667777777777764 432211111  222    357777777764 44 211112345


Q ss_pred             cchhhhhhhccc
Q 040815           96 WNAMKIVNARRM  107 (305)
Q Consensus        96 l~~L~~l~l~~~  107 (305)
                      +++|+.|++.++
T Consensus       138 ~~~L~~L~L~~c  149 (176)
T 3e4g_A          138 FRNLKYLFLSDL  149 (176)
T ss_dssp             CTTCCEEEEESC
T ss_pred             CCCCCEEECCCC
Confidence            566666665553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.61  E-value=0.00015  Score=53.79  Aligned_cols=58  Identities=16%  Similarity=0.197  Sum_probs=34.2

Q ss_pred             EEecCCcccc-ccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCC
Q 040815          143 VLNLQYNNLQ-GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGP  202 (305)
Q Consensus       143 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  202 (305)
                      .++.+++.++ ..+|..+.  .+|++|+|++|+|+...+..|..+++|+.|+|++|++.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd   70 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD   70 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence            5566666654 23443322  3566677777776655555566666777777776666543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.56  E-value=8.3e-05  Score=59.06  Aligned_cols=85  Identities=16%  Similarity=0.115  Sum_probs=58.6

Q ss_pred             ccccEEEccCCccccc----cchhhhCCCCCCEEecCCcccccc----CCccccCCCCCCEEeCCCC---cCCc----cC
Q 040815          115 DILAGIILSNNRFVGA----IPASIANLKGLQVLNLQYNNLQGL----IPSSLGNLTNLESLDLSNK---KFAG----RI  179 (305)
Q Consensus       115 ~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N---~l~~----~~  179 (305)
                      ..|+.|+|++|.+...    +.+.+..-+.|+.|+|++|.|...    +-+++..-+.|++|+|++|   .+..    .+
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i  149 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  149 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence            4688888888888643    344455567899999999998753    2234555677999999865   3333    23


Q ss_pred             ccccccCCCCCEEeccCCcc
Q 040815          180 PQQLVELTFLEFFNVSDNYL  199 (305)
Q Consensus       180 p~~~~~l~~L~~L~l~~N~l  199 (305)
                      ...+..-+.|+.|+++.|..
T Consensus       150 a~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          150 MMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCCcCeEeccCCCc
Confidence            44566678888999887754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.34  E-value=0.00041  Score=51.34  Aligned_cols=56  Identities=16%  Similarity=0.233  Sum_probs=38.3

Q ss_pred             EEeCCCcccC-CCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCc
Q 040815           26 FLGLGNYQIS-DTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFS   85 (305)
Q Consensus        26 ~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~   85 (305)
                      .++-+++.++ ..+|..+  -++|++|+|++|.|+.+.+..+  ..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f--~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLL--DALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTG--GGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhh--hhccccCEEEecCCCee
Confidence            5677777775 2455432  2367888888888877766655  66778888888888764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.11  E-value=0.00035  Score=55.44  Aligned_cols=84  Identities=11%  Similarity=0.137  Sum_probs=61.0

Q ss_pred             cccccEEEccCC-ccccc----cchhhhCCCCCCEEecCCccccccCC----ccccCCCCCCEEeCCCCcCCcc----Cc
Q 040815          114 PDILAGIILSNN-RFVGA----IPASIANLKGLQVLNLQYNNLQGLIP----SSLGNLTNLESLDLSNKKFAGR----IP  180 (305)
Q Consensus       114 ~~~L~~L~ls~n-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~----~p  180 (305)
                      -+.|++|+|++| .+...    +.+.+..-+.|+.|+|++|.+....-    ..+..-+.|++|+|++|.|...    +.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            356889999985 77532    34556667889999999999975432    3344568899999999999864    33


Q ss_pred             cccccCCCCCEEeccCC
Q 040815          181 QQLVELTFLEFFNVSDN  197 (305)
Q Consensus       181 ~~~~~l~~L~~L~l~~N  197 (305)
                      +.+..-+.|++|+|++|
T Consensus       120 ~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHTTTTCCCSEEECCCC
T ss_pred             HHHhhCCceeEEECCCC
Confidence            34555677999999865

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=91.03  E-value=0.1  Score=30.02  Aligned_cols=11  Identities=45%  Similarity=0.733  Sum_probs=4.6

Q ss_pred             eeehhhhhhHH
Q 040815          265 YAGGLVAGLVL  275 (305)
Q Consensus       265 ~~~~~~~~~~~  275 (305)
                      |+++++.++++
T Consensus        13 IA~gVVgGv~~   23 (44)
T 2ks1_B           13 IATGMVGALLL   23 (44)
T ss_dssp             STHHHHHHHHH
T ss_pred             EEeehhHHHHH
Confidence            33444444443

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=91.01  E-value=0.072  Score=30.60  Aligned_cols=10  Identities=40%  Similarity=0.946  Sum_probs=4.0

Q ss_pred             eehhhhhhHH
Q 040815          266 AGGLVAGLVL  275 (305)
Q Consensus       266 ~~~~~~~~~~  275 (305)
                      +++++.++++
T Consensus        13 A~gVVgGv~~   22 (44)
T 2l2t_A           13 AAGVIGGLFI   22 (44)
T ss_dssp             HHHHHHHHHH
T ss_pred             EEeehHHHHH
Confidence            3344443433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	305
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-23
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	9e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 95.1 bits (235), Expect = 7e-23
 Identities = 43/193 (22%), Positives = 71/193 (36%), Gaps = 15/193 (7%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           ++N      P      + L+ L L   Q+ D     L +L  L  L L +N    +    
Sbjct: 205 TNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPL- 259

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIV-NARRMMTYNKIPDILAGIILSN 124
               G +KL  + L  N+ S   P         +++  N    ++       L  + L  
Sbjct: 260 ---SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 316

Query: 125 NRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLV 184
           N      P  +++L  LQ L    N +     SSL NLTN+  L   + + +   P  L 
Sbjct: 317 NNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LA 370

Query: 185 ELTFLEFFNVSDN 197
            LT +    ++D 
Sbjct: 371 NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 5e-06
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 122 LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQ 181
           L        +  S  +L  +  L      ++ +    +  L NL  ++ SN +     P 
Sbjct: 29  LGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP- 83

Query: 182 QLVELTFLEFFNVSDNY 198
            L  LT L    +++N 
Sbjct: 84  -LKNLTKLVDILMNNNQ 99

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 24/111 (21%)

Query: 117 LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFA 176
           L  + L+ N+       ++A+L  L  L+L  N +  L P  L  LT L  L L   + +
Sbjct: 221 LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 276

Query: 177 GRIP--------------------QQLVELTFLEFFNVSDNYLTGPIPQGK 207
              P                      +  L  L +  +  N ++   P   
Sbjct: 277 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS 327

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 82.9 bits (203), Expect = 7e-19
 Identities = 59/254 (23%), Positives = 83/254 (32%), Gaps = 29/254 (11%)

Query: 6   SHNLFEGR--IPRSLINCSKLEFLGL-GNYQISDTFPSWLGTLPKLNVLILRSNIFYGVI 62
           S         IP SL N   L FL + G   +    P  +  L +L+ L +      G I
Sbjct: 58  SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI 117

Query: 63  EE----------------------PRTGCGFSKLRIIDLSNNRFSGNLPSKSF----LCW 96
            +                      P +      L  I    NR SG +P        L  
Sbjct: 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177

Query: 97  NAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP 156
           +     N           ++    +  +   +    + +              N      
Sbjct: 178 SMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

Query: 157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTS 216
             +G   NL  LDL N +  G +PQ L +L FL   NVS N L G IPQG     FD ++
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297

Query: 217 FDGNSGLCGKPLSK 230
           +  N  LCG PL  
Sbjct: 298 YANNKCLCGSPLPA 311

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.2 bits (173), Expect = 1e-14
 Identities = 38/214 (17%), Positives = 66/214 (30%), Gaps = 11/214 (5%)

Query: 24  LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR 83
              L L N +I++        L  L+ LIL +N    +   P       KL  + LS N+
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--PGAFAPLVKLERLYLSKNQ 90

Query: 84  FSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIIL-----SNNRFVGAIPASIANL 138
               LP K       +++           + + L  +I+     +  +  G    +   +
Sbjct: 91  LK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 139 KGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNY 198
           K L  + +   N+  +     G   +L  L L   K        L  L  L    +S N 
Sbjct: 150 KKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 199 LTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGC 232
           ++                   N+ L   P     
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 240

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.1 bits (157), Expect = 1e-12
 Identities = 40/219 (18%), Positives = 66/219 (30%), Gaps = 7/219 (3%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEE- 64
            +N           N   L  L L N +IS   P     L KL  L L  N    + E+ 
Sbjct: 39  QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 98

Query: 65  --PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIIL 122
                     +  I  +  + F+G                +      +  +   L+ I +
Sbjct: 99  PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK-LSYIRI 157

Query: 123 SNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQ 182
           ++      IP  +     L  L+L  N +  +  +SL  L NL  L LS    +      
Sbjct: 158 ADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 214

Query: 183 LVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNS 221
           L     L   ++++N L                    N+
Sbjct: 215 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 2e-10
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 2/101 (1%)

Query: 124 NNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQL 183
           ++  +  +P  +       +L+LQ N +  +      NL NL +L L N K +   P   
Sbjct: 18  SDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 75

Query: 184 VELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLC 224
             L  LE   +S N L     +  +         +  + + 
Sbjct: 76  APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR 116

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.7 bits (130), Expect = 4e-09
 Identities = 22/117 (18%), Positives = 35/117 (29%)

Query: 113 IPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
           +P   A + L NN+          NLK L  L L  N +  + P +   L  LE L LS 
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 173 KKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLS 229
            +      +    L  L         +   +  G           +       +  +
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.1 bits (126), Expect = 1e-08
 Identities = 23/179 (12%), Positives = 55/179 (30%), Gaps = 17/179 (9%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQI--SDTFPSWLGTLPKLNVLILRSNIFYGVIE 63
             N             +++  + LG   +  S         + KL+ + +       + +
Sbjct: 108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 167

Query: 64  EPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIIL- 122
                     L  + L  N+ +    +      N  K+  +   ++      +     L 
Sbjct: 168 G-----LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 222

Query: 123 ---SNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSS------LGNLTNLESLDLSN 172
               NN  +  +P  +A+ K +QV+ L  NN+  +  +            +   + L +
Sbjct: 223 ELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.3 bits (111), Expect = 8e-07
 Identities = 28/176 (15%), Positives = 50/176 (28%), Gaps = 17/176 (9%)

Query: 7   HNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPR 66
                G    +     KL ++ + +  I+       G  P L  L L  N    V     
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVD--AA 189

Query: 67  TGCGFSKLRIIDLSNNRFSGNLPS----KSFLCWNAMKIVNARRMMTYNKIPDILAGIIL 122
           +  G + L  + LS N  S            L    +      ++         +  + L
Sbjct: 190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 249

Query: 123 SNNRF------VGAIPASIANLKGLQVLNLQYNNLQ--GLIPSSLGNLTNLESLDL 170
            NN            P           ++L  N +Q   + PS+   +    ++ L
Sbjct: 250 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 9e-10
 Identities = 24/170 (14%), Positives = 44/170 (25%), Gaps = 1/170 (0%)

Query: 6   SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEP 65
           S NL       +L+  ++L  L L   +++         +     L         ++ + 
Sbjct: 39  SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQT 98

Query: 66  RTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN 125
                   +    L++                                   L  + L+NN
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158

Query: 126 RFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF 175
                    +  L+ L  L LQ N+L   IP        L    L    +
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 9e-10
 Identities = 30/184 (16%), Positives = 51/184 (27%), Gaps = 3/184 (1%)

Query: 14  IPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSK 73
           +P  L        L L    +     + L    +L  L L       +  +       + 
Sbjct: 25  LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82

Query: 74  LRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPA 133
               +   +         +    +          +   +    L  + L  N      P 
Sbjct: 83  DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142

Query: 134 SIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFN 193
            +     L+ L+L  NNL  L    L  L NL++L L        IP+       L F  
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF 201

Query: 194 VSDN 197
           +  N
Sbjct: 202 LHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 122 LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF 175
                   A+P  +   K   +L+L  N L     ++L   T L  L+L   + 
Sbjct: 17  CDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 7e-05
 Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 3/65 (4%)

Query: 134 SIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFN 193
            ++ +     +N    NL   +P  L    +   L LS           L+  T L   N
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 194 VSDNY 198
           +    
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 7   HNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPR 66
            N  +   P  L    KLE L L N  +++     L  L  L+ L+L+ N  Y +   P+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI---PK 189

Query: 67  TGCGFSKLRIIDLSNNRFSGNLPSKSFLCW 96
              G   L    L  N +  N     F  W
Sbjct: 190 GFFGSHLLPFAFLHGNPWLCNCEILYFRRW 219

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 2e-09
 Identities = 26/169 (15%), Positives = 46/169 (27%), Gaps = 45/169 (26%)

Query: 7   HNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEE-- 64
            N  +     +  +   L  L L   +IS         L  L+ L+L  N    V     
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 65  --------------------PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNA 104
                                        L+ + L++N +  +  ++    W        
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW-------- 249

Query: 105 RRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG 153
                       L     S++    ++P     L G  +  L  N+LQG
Sbjct: 250 ------------LQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 4e-09
 Identities = 34/212 (16%), Positives = 67/212 (31%), Gaps = 9/212 (4%)

Query: 24  LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR 83
            + + L   +IS    +       L +L L SN+   +     TG    +   +   +N 
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS--DNA 91

Query: 84  FSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI------LAGIILSNNRFVGAIPASIAN 137
              ++   +F     +  ++  R       P +      L  + L +N        +  +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 138 LKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDN 197
           L  L  L L  N +  +   +   L +L+ L L   + A   P    +L  L    +  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 198 YLTGPIPQGKQFATFDNT-SFDGNSGLCGKPL 228
            L+    +             + N  +C    
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 4e-08
 Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 10/160 (6%)

Query: 20  NCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL 79
             + L++L L +  +          L  L  L L  N    V E      G   L  + L
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER--AFRGLHSLDRLLL 184

Query: 80  SNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI-----LAGIILSNNRFVGAIPAS 134
             NR +   P         M +      ++      +     L  + L++N +V     +
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-A 243

Query: 135 IANLKGLQVLNLQYNNLQGLIPSSLGN--LTNLESLDLSN 172
                 LQ      + +   +P  L    L  L + DL  
Sbjct: 244 RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 95  CWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGL 154
                        +T       L  +   +N+     P  +A+L  L  ++L+ N +  +
Sbjct: 153 LQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV 210

Query: 155 IPSSLGNLTNLESLDLSN 172
            P  L N +NL  + L+N
Sbjct: 211 SP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 3e-06
 Identities = 26/197 (13%), Positives = 51/197 (25%), Gaps = 23/197 (11%)

Query: 17  SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRI 76
           +  +   +  L      ++      +  L  L  L L+ N    +               
Sbjct: 36  TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELS 93

Query: 77  IDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDIL-----------------AG 119
            +   N  +                +     +       +L                   
Sbjct: 94  GNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNL 153

Query: 120 IILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRI 179
             LS      +    +ANL  L  L    N +  + P  L +L NL  + L N + +   
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS 211

Query: 180 PQQLVELTFLEFFNVSD 196
           P  L   + L    +++
Sbjct: 212 P--LANTSNLFIVTLTN 226

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 5e-08
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 9/101 (8%)

Query: 95  CWNAMKIVNARRMMTYNKIPDILAGIILSNNRF----VGAIPASIANLKGLQVLNLQYNN 150
                            +   +L  + L++         ++ A++     L+ L+L  N 
Sbjct: 349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408

Query: 151 LQGLIPSSLG-----NLTNLESLDLSNKKFAGRIPQQLVEL 186
           L       L          LE L L +  ++  +  +L  L
Sbjct: 409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 3e-07
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 122 LSNNRFVGA-IPASIANLKGLQVLNLQYNNLQG----LIPSSLGNLTNLESLDLSNKKFA 176
           +       A     +  L+  QV+ L    L       I S+L     L  L+L + +  
Sbjct: 9   IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 68

Query: 177 GRIPQQLVEL 186
                 +++ 
Sbjct: 69  DVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 4e-07
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 9/83 (10%)

Query: 132 PASIANLKGLQVLNLQYNNLQGL----IPSSLGNLTNLESLDLSNKKFAGRIPQQLVE-- 185
                    L+VL L   ++       + ++L    +L  LDLSN         QLVE  
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 186 ---LTFLEFFNVSDNYLTGPIPQ 205
                 LE   + D Y +  +  
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 1e-05
 Identities = 13/104 (12%), Positives = 32/104 (30%), Gaps = 19/104 (18%)

Query: 74  LRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPA 133
           ++ +D+     S    ++        ++V     +    + +               I +
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVR----LDDCGLTE----------ARCKDISS 49

Query: 134 SIANLKGLQVLNLQYNNLQGLIPSSLG-----NLTNLESLDLSN 172
           ++     L  LNL+ N L  +    +          ++ L L N
Sbjct: 50  ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 17/83 (20%)

Query: 20  NCSKLEFLGLGNYQISDT----FPSWLGTLPKLNVLILRSN--------IFYGVIEEPRT 67
             S L  L L +  +SD+      + L     L  L L +N             + +P  
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 68  GCGFSKLRIIDLSNNRFSGNLPS 90
                 L  + L +  +S  +  
Sbjct: 427 -----LLEQLVLYDIYWSEEMED 444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 1e-07
 Identities = 29/170 (17%), Positives = 47/170 (27%), Gaps = 21/170 (12%)

Query: 20  NCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYG-----------VIEEPRTG 68
             + ++ +   N  I       +  LP +  L L  N                +      
Sbjct: 44  ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENK 101

Query: 69  CGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFV 128
                           S      S +             +  NKI DI     L+    +
Sbjct: 102 VKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTL 161

Query: 129 GAI------PASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172
                       +A L  LQ L L  N++  L   +L  L NL+ L+L +
Sbjct: 162 SLEDNQISDIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFS 209

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 1e-07
 Identities = 11/78 (14%), Positives = 18/78 (23%)

Query: 95  CWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGL 154
                K               +    +  NN              G  +L++    +  L
Sbjct: 157 ILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 216

Query: 155 IPSSLGNLTNLESLDLSN 172
               L NL  L +    N
Sbjct: 217 PSYGLENLKKLRARSTYN 234

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 4e-04
 Identities = 8/64 (12%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 119 GIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGR 178
             +   ++    IP+ +   +    L      L+ +   +     +LE +++S       
Sbjct: 12  VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 179 IPQQ 182
           I   
Sbjct: 69  IEAD 72

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 3e-07
 Identities = 29/181 (16%), Positives = 59/181 (32%), Gaps = 14/181 (7%)

Query: 6   SHNLFEGRIPRSLI-NCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEE 64
           S+++ E      ++  CSKL+ L L   ++SD   + L     L  L L     +     
Sbjct: 54  SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFAL 113

Query: 65  PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKI------------VNARRMMTYNK 112
                  S+L  ++LS          +  +   +  I              +       +
Sbjct: 114 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 173

Query: 113 IPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQY-NNLQGLIPSSLGNLTNLESLDLS 171
            P+++   +  +             L  LQ L+L    ++       LG +  L++L + 
Sbjct: 174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233

Query: 172 N 172
            
Sbjct: 234 G 234

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 10/85 (11%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 122 LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQ 181
           L+       +   + +  G+       + +   +     +   ++ +DLSN         
Sbjct: 7   LTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLH 64

Query: 182 QLVE-LTFLEFFNVSDNYLTGPIPQ 205
            ++   + L+  ++    L+ PI  
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPIVN 89

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 6/105 (5%)

Query: 70  GFSKLRIIDLSNNRFSGNLPSKSFLC--WNAMKIVNARRMMTYNKIPDILAGIILSNNRF 127
               +  +DLS+NR     P+ + L          NA   +        L  ++L NNR 
Sbjct: 18  QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL 77

Query: 128 VG-AIPASIANLKGLQVLNLQYNNL---QGLIPSSLGNLTNLESL 168
              A    + +   L +LNLQ N+L   +G+       L ++ S+
Sbjct: 78  QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 8e-05
 Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 13/120 (10%)

Query: 75  RIIDLSNNRFS-----GNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVG 129
           R++ L++   +       L   + L  +  ++           +  +    +L  +    
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRL-----RALPPALAALRCLEVLQASDNAL 55

Query: 130 AIPASIANLKGLQVLNLQYNNLQGL-IPSSLGNLTNLESLDLSNKKFAGR--IPQQLVEL 186
                +ANL  LQ L L  N LQ       L +   L  L+L          I ++L E+
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 5e-04
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 26/103 (25%)

Query: 122 LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNL---------------- 165
           L++      +   +  L  +  L+L +N L+  +P +L  L  L                
Sbjct: 5   LAHKDL--TVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENVDGV 61

Query: 166 ------ESLDLSNKKFAG-RIPQQLVELTFLEFFNVSDNYLTG 201
                 + L L N +       Q LV    L   N+  N L  
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 9e-06
 Identities = 22/117 (18%), Positives = 36/117 (30%), Gaps = 2/117 (1%)

Query: 114 PDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNN-LQGLIPSSLGNLTNLESLDLSN 172
           P   +G+  + +  +      +   + L  L ++    LQ L    L  L  L +L +  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 173 KKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLS 229
                  P        L   N+S N L     +  Q  +       GN   C   L 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 122 LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQ 181
              N     I +       L+ LN+  N L   +P+       LE L  S       +P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPP---RLERLIASFNHL-AEVPE 321

Query: 182 QLVELTFLEFFNVSDNYLTG 201
               L  L   +V  N L  
Sbjct: 322 LPQNLKQL---HVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 4e-05
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 28/97 (28%)

Query: 69  CGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFV 128
                L  +++SNN+    LP+                      +P  L  +I S N   
Sbjct: 281 DLPPSLEELNVSNNKLI-ELPA----------------------LPPRLERLIASFNHL- 316

Query: 129 GAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNL 165
             +P    NLK    L+++YN L+   P    ++ +L
Sbjct: 317 AEVPELPQNLK---QLHVEYNPLREF-PDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 8/63 (12%)

Query: 139 KGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNY 198
           +    L L    L  L P    +L   ESL  S       +P+       L+   V +N 
Sbjct: 38  RQAHELELNNLGLSSL-PELPPHL---ESLVASCNSLT-ELPE---LPQSLKSLLVDNNN 89

Query: 199 LTG 201
           L  
Sbjct: 90  LKA 92

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 23/169 (13%), Positives = 44/169 (26%), Gaps = 21/169 (12%)

Query: 17  SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRI 76
           S  +  ++  L      I       +  L  L  +   +N    +            L  
Sbjct: 35  SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMN 92

Query: 77  IDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAI----- 131
            +   +       +           +     +      + L     + +           
Sbjct: 93  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 152

Query: 132 ------------PASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESL 168
                          +ANL  L+ L++  N +  +  S L  LTNLESL
Sbjct: 153 QQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 4/58 (6%)

Query: 120 IILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAG 177
            +L        +  S  +L  +  L      ++ +    +  L NL  ++ SN +   
Sbjct: 23  TVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD 76

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.2 bits (97), Expect = 4e-05
 Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 13/105 (12%)

Query: 95  CWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIAN------LKGLQVLNLQY 148
             N    + +  +    K    L  + L++        A++ +        GLQ L LQY
Sbjct: 223 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY 282

Query: 149 NNLQGLIPSSL-----GNLTNLESLDLSNKKFA--GRIPQQLVEL 186
           N ++     +L       + +L  L+L+  +F+    +  ++ E+
Sbjct: 283 NEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 7e-05
 Identities = 11/90 (12%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 139 KGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF----AGRIPQQLVELTFLEFFNV 194
           K L++  +   + +  + + L    +++ + LS        A  + + +     LE    
Sbjct: 8   KSLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 195 SDNYLTGPIPQGKQFATFDNTSFDGNSGLC 224
           SD +      +  +       +      L 
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLH 96

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 6/47 (12%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 130 AIPASIANLKGLQVLNLQYNNLQG----LIPSSLGNLTNLESLDLSN 172
           ++ A +     ++ + L  N +       +  ++ +  +LE  + S+
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 122 LSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQ 181
           L   +    I    A L     ++   N ++ L       L  L++L ++N +       
Sbjct: 25  LRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNNNRICRIGEG 81

Query: 182 QLVELTFLEFFNVSDNYLT 200
               L  L    +++N L 
Sbjct: 82  LDQALPDLTELILTNNSLV 100

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 19/155 (12%), Positives = 43/155 (27%), Gaps = 20/155 (12%)

Query: 17  SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRI 76
              N  +   L L  Y+I     +   TL + + +    N    +   P       +L+ 
Sbjct: 13  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP----LLRRLKT 67

Query: 77  IDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIA 136
           + ++NNR                         +  ++ D+     L +  ++        
Sbjct: 68  LLVNNNRICRIGE--GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL-------- 117

Query: 137 NLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLS 171
                 +L     N +      +  +  +  LD  
Sbjct: 118 -----CILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 131 IPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESL 168
           + A+++ LK  + L L  NN++ +  SSL  + NL  L
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRIL 75

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 6/49 (12%)

Query: 133 ASIANLKGLQVLNLQYNNLQGLIP------SSLGNLTNLESLDLSNKKF 175
                 K +     +   L G+IP      ++L  L   + L LS    
Sbjct: 12  RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 15/81 (18%), Positives = 29/81 (35%)

Query: 147 QYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 206
             N ++ +       L  L++L+L + + +  +P     L  L   N++ N         
Sbjct: 86  GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145

Query: 207 KQFATFDNTSFDGNSGLCGKP 227
                    S +G +  CG P
Sbjct: 146 WFAEWLRKKSLNGGAARCGAP 166

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 2/112 (1%)

Query: 73  KLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVG--A 130
             + +DL   R   +L +++       +   A  +    +    L  + LSNNR      
Sbjct: 23  SQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDD 82

Query: 131 IPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQ 182
           + + +     L++LNL  N L+            LE L L     +     Q
Sbjct: 83  MSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQ 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	305
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.86
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.86
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.82
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.8
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.8
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.79
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.78
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.78
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.65
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.63
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.61
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.55
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.52
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.46
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.46
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.44
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.41
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.32
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.27
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.01
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.57
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.53
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.86
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.42
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.26

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=5e-32  Score=233.85  Aligned_cols=226  Identities=31%  Similarity=0.429  Sum_probs=184.5

Q ss_pred             EEEccCCcccc--ccchhccCCCCCcEEeCCC-cccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEE
Q 040815            2 EAKRSHNLFEG--RIPRSLINCSKLEFLGLGN-YQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIID   78 (305)
Q Consensus         2 ~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~   78 (305)
                      .|+|++|.++|  .+|++++++++|++|+|++ |+++|.+|..|+++++|++|+|++|++.+..+..+  ..+..|+.++
T Consensus        54 ~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~--~~~~~L~~l~  131 (313)
T d1ogqa_          54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTLVTLD  131 (313)
T ss_dssp             EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTCCEEE
T ss_pred             EEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccc--cchhhhcccc
Confidence            58999999987  4789999999999999986 88999999999999999999999999988776655  6677788888


Q ss_pred             ccCCcCcccCChhhhhccchhhhhhhccccc-------cCcccc-----------------------cccEEEccCCccc
Q 040815           79 LSNNRFSGNLPSKSFLCWNAMKIVNARRMMT-------YNKIPD-----------------------ILAGIILSNNRFV  128 (305)
Q Consensus        79 L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~-------~~~~~~-----------------------~L~~L~ls~n~l~  128 (305)
                      +++|.+.+.+|.. +..++.++.+++..+..       +.....                       ....++++.+.+.
T Consensus       132 l~~N~~~~~~p~~-l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~  210 (313)
T d1ogqa_         132 FSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE  210 (313)
T ss_dssp             CCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred             cccccccccCchh-hccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8888777666654 67777777766654211       111111                       2234555666666


Q ss_pred             cccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCC
Q 040815          129 GAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQ  208 (305)
Q Consensus       129 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~  208 (305)
                      +.+|..+..+++++.+++++|.+.+.+| .+..+++|+.|+|++|+++|.+|..+..+++|++|||++|+|+|.+|+...
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~  289 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN  289 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT
T ss_pred             cccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCccc
Confidence            6677777778899999999999997655 588899999999999999999999999999999999999999999998888


Q ss_pred             CCccCCCccCCCCCCCCCCCCCCC
Q 040815          209 FATFDNTSFDGNSGLCGKPLSKGC  232 (305)
Q Consensus       209 ~~~l~~~~~~~n~~~c~~~~~~~c  232 (305)
                      +..+..+++.||+.+|+.|++ .|
T Consensus       290 L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         290 LQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CCCCCHHHhCCCccccCCCCC-CC
Confidence            889999999999999998864 45

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-26  Score=194.70  Aligned_cols=199  Identities=24%  Similarity=0.229  Sum_probs=161.2

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN   81 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~   81 (305)
                      +.|.++++|+ .+|..+.  +++++|+|++|+|++..+..|.++++|++|+|++|.|+.+.+  +  ..+++|++|++++
T Consensus        14 ~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~--~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          14 EVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--D--GTLPVLGTLDLSH   86 (266)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--C--SCCTTCCEEECCS
T ss_pred             EEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--c--ccccccccccccc
Confidence            4688999999 5787663  689999999999987777889999999999999999986532  2  5689999999999


Q ss_pred             CcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccC
Q 040815           82 NRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGN  161 (305)
Q Consensus        82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  161 (305)
                      |+++ .++.. +..                  ++.|+.|++++|.+.+..+..+..+.+++.|++++|.++...+..+..
T Consensus        87 N~l~-~~~~~-~~~------------------l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~  146 (266)
T d1p9ag_          87 NQLQ-SLPLL-GQT------------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP  146 (266)
T ss_dssp             SCCS-SCCCC-TTT------------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             cccc-ccccc-ccc------------------ccccccccccccccceeeccccccccccccccccccccceeccccccc
Confidence            9998 45532 333                  455777888888888777777788888899999998888777777788


Q ss_pred             CCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040815          162 LTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL  228 (305)
Q Consensus       162 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~  228 (305)
                      +++++.+++++|++++..+..+..+++|++|+|++|.|+ .+|.. .....+..+.+.||||.|+|..
T Consensus       147 l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             cccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcch
Confidence            888999999999888777777888888999999999888 56653 4456677788889999888753

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.7e-26  Score=196.14  Aligned_cols=221  Identities=16%  Similarity=0.197  Sum_probs=173.0

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN   81 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~   81 (305)
                      +++.+++.++ .+|..+.  +++++|+|++|+|+...+.+|.++++|++|++++|.+....+..+  ..+..++.++...
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~--~~~~~~~~l~~~~   89 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF--TGLALLEQLDLSD   89 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCS
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccc--ccccccccccccc
Confidence            3456666676 5665543  567888888888876555677888888888888888877665555  6677777777654


Q ss_pred             -CcCcccCChhhhhccchhhhhhhcccc------ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccccc
Q 040815           82 -NRFSGNLPSKSFLCWNAMKIVNARRMM------TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGL  154 (305)
Q Consensus        82 -n~l~g~~p~~~~~~l~~L~~l~l~~~~------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  154 (305)
                       |.++ .++...|.++++|+.|++....      ........|+.+++++|.+++..+..|..+++|+.|++++|++++.
T Consensus        90 ~~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_          90 NAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (284)
T ss_dssp             CTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             ccccc-cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc
Confidence             4444 6766677788888877776522      1223467789999999999977778888999999999999999988


Q ss_pred             CCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040815          155 IPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL  228 (305)
Q Consensus       155 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~  228 (305)
                      .+.+|.++++|+.+++++|++++..|..|..+++|++||+++|.+++..|.. .....+..+.+.+||+.|+|+.
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             chhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence            8889999999999999999999888999999999999999999999765543 3456678888999999999874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=2.7e-26  Score=197.64  Aligned_cols=197  Identities=23%  Similarity=0.325  Sum_probs=167.3

Q ss_pred             CEEEccC-CccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEc
Q 040815            1 MEAKRSH-NLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L   79 (305)
                      ++|+|++ |.++|.+|.+|+++++|++|+|++|++.+..+..+..+.+|+.+++++|.+.+.+|..+  ..++.++.+++
T Consensus        79 ~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l--~~l~~L~~l~l  156 (313)
T d1ogqa_          79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI--SSLPNLVGITF  156 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhh--ccCcccceeec
Confidence            5899987 89999999999999999999999999999888889999999999999999988877766  88999999999


Q ss_pred             cCCcCcccCChhhhhccchh-hhhhhcc-----------------------------ccccCcccccccEEEccCCcccc
Q 040815           80 SNNRFSGNLPSKSFLCWNAM-KIVNARR-----------------------------MMTYNKIPDILAGIILSNNRFVG  129 (305)
Q Consensus        80 ~~n~l~g~~p~~~~~~l~~L-~~l~l~~-----------------------------~~~~~~~~~~L~~L~ls~n~l~~  129 (305)
                      ++|.+.|.+|.. +..+..+ +.+++..                             ........+.++.+++++|.+.+
T Consensus       157 ~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~  235 (313)
T d1ogqa_         157 DGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             CSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             cccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999899876 4444443 3333221                             01112235679999999999997


Q ss_pred             ccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCc-ccCC
Q 040815          130 AIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNY-LTGP  202 (305)
Q Consensus       130 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~~~  202 (305)
                      .+| .++.+++|+.|+|++|+++|.+|..|+++++|++|+|++|+++|.+|. +..+++|+.+++++|+ +.|.
T Consensus       236 ~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             BGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             ccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence            655 688899999999999999999999999999999999999999999985 5788999999999997 5553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=4.5e-24  Score=182.83  Aligned_cols=216  Identities=22%  Similarity=0.275  Sum_probs=158.4

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|+|+...+.+|.++++|++|++++|.+....|..|.++++|++|++++|+++.+...     ....++.|+++
T Consensus        34 ~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~-----~~~~l~~L~~~  108 (305)
T d1xkua_          34 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK-----MPKTLQELRVH  108 (305)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-----CCTTCCEEECC
T ss_pred             CEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc-----hhhhhhhhhcc
Confidence            5788888888855556788888888899988888877788888888888899888888765322     23567777777


Q ss_pred             CCcCcccCChhhhhccchhh--------------------------hhhhcccc--c-cCcccccccEEEccCCcccccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMK--------------------------IVNARRMM--T-YNKIPDILAGIILSNNRFVGAI  131 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~--------------------------~l~l~~~~--~-~~~~~~~L~~L~ls~n~l~~~~  131 (305)
                      +|.+. .++...+.....+.                          .+++....  . ....+++++.|++++|..++..
T Consensus       109 ~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~  187 (305)
T d1xkua_         109 ENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD  187 (305)
T ss_dssp             SSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEEC
T ss_pred             ccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCC
Confidence            77776 55544444333222                          22222211  0 1223567888888888888788


Q ss_pred             chhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-----
Q 040815          132 PASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-----  206 (305)
Q Consensus       132 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-----  206 (305)
                      +..+..++.++.|++++|.+++..+..+.++++|++|+|++|+++ .+|..+..+++|++|++++|+++. ++..     
T Consensus       188 ~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~-i~~~~f~~~  265 (305)
T d1xkua_         188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IGSNDFCPP  265 (305)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC-CCTTSSSCS
T ss_pred             hhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCc-cChhhccCc
Confidence            888888899999999999998888888888999999999999988 678888889999999999999884 3332     


Q ss_pred             ---CCCCccCCCccCCCCCCC
Q 040815          207 ---KQFATFDNTSFDGNSGLC  224 (305)
Q Consensus       207 ---~~~~~l~~~~~~~n~~~c  224 (305)
                         .....+..+.+.|||+.+
T Consensus       266 ~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         266 GYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             SCCTTSCCCSEEECCSSSSCG
T ss_pred             chhcccCCCCEEECCCCcCcc
Confidence               123445666778888754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.4e-24  Score=181.07  Aligned_cols=178  Identities=25%  Similarity=0.272  Sum_probs=155.4

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|+|++..+.+|.++++|++|+|++|+|+. +| .++.+++|++|+|++|+++...+ .+  ..+++|+.|+++
T Consensus        34 ~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~~~~~-~~--~~l~~L~~L~l~  108 (266)
T d1p9ag_          34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQSLPL-LG--QTLPALTVLDVS  108 (266)
T ss_dssp             CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCSSCCC-CT--TTCTTCCEEECC
T ss_pred             CEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccccccccccc-cc--cccccccccccc
Confidence            589999999997777889999999999999999974 44 35789999999999999986533 33  789999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG  160 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  160 (305)
                      +|.+. .++...+..                  +..++.|++++|.++...+..+..++.++.+++++|++++..+..|.
T Consensus       109 ~~~~~-~~~~~~~~~------------------l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~  169 (266)
T d1p9ag_         109 FNRLT-SLPLGALRG------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN  169 (266)
T ss_dssp             SSCCC-CCCSSTTTT------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred             ccccc-eeecccccc------------------ccccccccccccccceeccccccccccchhcccccccccccCccccc
Confidence            99998 666554443                  45678888999999977778888899999999999999988888899


Q ss_pred             CCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCC
Q 040815          161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPI  203 (305)
Q Consensus       161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  203 (305)
                      .+++|++|+|++|+|+ .+|..+..+++|+.|+|++|++.+.+
T Consensus       170 ~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             TCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             cccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCc
Confidence            9999999999999999 88988999999999999999998754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.4e-24  Score=179.71  Aligned_cols=202  Identities=18%  Similarity=0.167  Sum_probs=173.9

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEcc-CccCCcccCCCCCCCCCCCccEEEc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILR-SNIFYGVIEEPRTGCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~~l~~L~~L~L   79 (305)
                      ++|+|++|+|++..+.+|.++++|++|++++|.+....+..+..+..++.++.. .|.++...+..+  .++++|+.|++
T Consensus        35 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~--~~l~~L~~L~l  112 (284)
T d1ozna_          35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF--HGLGRLHTLHL  112 (284)
T ss_dssp             SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT--TTCTTCCEEEC
T ss_pred             CEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhh--cccccCCEEec
Confidence            589999999997666789999999999999999988778788888888888765 556666656665  78899999999


Q ss_pred             cCCcCcccCChhhhhccchhhhhhhccc------cccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccc
Q 040815           80 SNNRFSGNLPSKSFLCWNAMKIVNARRM------MTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG  153 (305)
Q Consensus        80 ~~n~l~g~~p~~~~~~l~~L~~l~l~~~------~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  153 (305)
                      ++|.+. .++...+....+|+.+++...      .......+.|+.|++++|.+++..+.+|.++++|+.+++++|++++
T Consensus       113 ~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         113 DRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            999887 666667888888888887652      1223346789999999999998888899999999999999999999


Q ss_pred             cCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC
Q 040815          154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ  205 (305)
Q Consensus       154 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  205 (305)
                      ..|..|..+++|++||+++|.+.+..+..+..+++|++|++++|++.+.++.
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence            9999999999999999999999988889999999999999999999987653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.86  E-value=1.6e-21  Score=155.56  Aligned_cols=181  Identities=17%  Similarity=0.228  Sum_probs=116.9

Q ss_pred             cEEeCCCcccCCCcChhccCCCCCCEEEccCccCCccc-CCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhh
Q 040815           25 EFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVI-EEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVN  103 (305)
Q Consensus        25 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~  103 (305)
                      +.++.++++++ .+|..+  .+++++|+|++|.|+..+ +..|  ..+++|+.|++++|.+. .++...|..        
T Consensus        11 ~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f--~~l~~L~~L~L~~N~i~-~~~~~~~~~--------   76 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLF--GRLPHLVKLELKRNQLT-GIEPNAFEG--------   76 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSG--GGCTTCCEEECCSSCCC-CBCTTTTTT--------
T ss_pred             CEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCccccccccc--CCCceEeeeeccccccc-ccccccccc--------
Confidence            45666666665 355433  246666777777665432 2333  56667777777777666 444444443        


Q ss_pred             hccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCcccc
Q 040815          104 ARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQL  183 (305)
Q Consensus       104 l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  183 (305)
                                ++.|+.|++++|+++...+.+|.++++|++|+|++|+|++..|++|..+++|++|+|++|.+.......+
T Consensus        77 ----------~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~  146 (192)
T d1w8aa_          77 ----------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW  146 (192)
T ss_dssp             ----------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH
T ss_pred             ----------ccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH
Confidence                      3345566677777776666778888999999999999998888889999999999999998875432211


Q ss_pred             ccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCCCCCCCCCC
Q 040815          184 VELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGC  232 (305)
Q Consensus       184 ~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~~~c  232 (305)
                       -...++.+.+..|.+++..|.  .+......++..|...|.++...+|
T Consensus       147 -~~~~l~~~~l~~~~~~c~~p~--~l~~~~l~~L~~n~l~C~~~~~~g~  192 (192)
T d1w8aa_         147 -FAEWLRKKSLNGGAARCGAPS--KVRDVQIKDLPHSEFKCSSENSEGC  192 (192)
T ss_dssp             -HHHHHHHHCCSGGGCBBCSST--TTTTSBGGGSCTTTCCCCCC---CC
T ss_pred             -HhhhhhhhcccCCCeEeCCCh--hhcCCEeeecCHhhCcCCCCCCCCC
Confidence             112355667777888877775  3444555567778787877655554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=1.3e-20  Score=161.08  Aligned_cols=212  Identities=21%  Similarity=0.227  Sum_probs=170.0

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      +++|=++++++ .+|..+  .+++++|+|++|+|+...+.+|.++++|++|++++|.+....+..+  ..+++|++|+++
T Consensus        13 ~~~~C~~~~L~-~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f--~~l~~L~~L~l~   87 (305)
T d1xkua_          13 RVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF--APLVKLERLYLS   87 (305)
T ss_dssp             TEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT--TTCTTCCEEECC
T ss_pred             CEEEecCCCCC-ccCCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhh--hCCCccCEeccc
Confidence            35677788888 678766  3789999999999987666689999999999999999998877777  889999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhc--c---------------------------ccccCcccccccEEEccCCcccccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNAR--R---------------------------MMTYNKIPDILAGIILSNNRFVGAI  131 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~--~---------------------------~~~~~~~~~~L~~L~ls~n~l~~~~  131 (305)
                      +|+++ .+|...+..+..|...+..  .                           .......++.|+.+++++|.++ .+
T Consensus        88 ~n~l~-~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l  165 (305)
T d1xkua_          88 KNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TI  165 (305)
T ss_dssp             SSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SC
T ss_pred             CCccC-cCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-cc
Confidence            99999 8887655444333221100  0                           0111223567899999999988 55


Q ss_pred             chhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC-CCCCC
Q 040815          132 PASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFA  210 (305)
Q Consensus       132 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~  210 (305)
                      |..+  .++|+.|++++|..++..+..|..++.+++|++++|.+++..+..+..+++|++|++++|.|+. +|. ...++
T Consensus       166 ~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~~l~~l~  242 (305)
T d1xkua_         166 PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHK  242 (305)
T ss_dssp             CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCS
T ss_pred             Cccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccc-ccccccccc
Confidence            6543  6799999999999999999999999999999999999998888999999999999999999984 554 35577


Q ss_pred             ccCCCccCCCCC
Q 040815          211 TFDNTSFDGNSG  222 (305)
Q Consensus       211 ~l~~~~~~~n~~  222 (305)
                      .+..+.+.+|..
T Consensus       243 ~L~~L~Ls~N~i  254 (305)
T d1xkua_         243 YIQVVYLHNNNI  254 (305)
T ss_dssp             SCCEEECCSSCC
T ss_pred             CCCEEECCCCcc
Confidence            888888888763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=2.1e-19  Score=157.79  Aligned_cols=55  Identities=33%  Similarity=0.335  Sum_probs=33.7

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCC
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFY   59 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~   59 (305)
                      ++|+|++|+|++ ++ .+.++++|++|++++|++.+..+  ++.+++|+.|++++|.++
T Consensus        69 ~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~~~~~~~  123 (384)
T d2omza2          69 TQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT  123 (384)
T ss_dssp             CEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             CEEeCcCCcCCC-Cc-cccCCcccccccccccccccccc--cccccccccccccccccc
Confidence            456677776663 33 26666777777777776654322  566666666666665554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=7.3e-19  Score=143.66  Aligned_cols=194  Identities=16%  Similarity=0.185  Sum_probs=130.5

Q ss_pred             EccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCc
Q 040815            4 KRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR   83 (305)
Q Consensus         4 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~   83 (305)
                      +++.+.+++..  .+.++.+|+.|++.+|.|+. ++ .+..+++|++|++++|.+++..+  +  ..+++|+.+++++|.
T Consensus        25 ~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l--~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--L--KNLTKITELELSGNP   96 (227)
T ss_dssp             HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--G--TTCCSCCEEECCSCC
T ss_pred             HhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--c--ccccccccccccccc
Confidence            34555555433  33556777788888777764 33 46777788888888877765532  2  667777888887777


Q ss_pred             CcccCChhhhhccchhhhhhhcccccc----CcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccc
Q 040815           84 FSGNLPSKSFLCWNAMKIVNARRMMTY----NKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSL  159 (305)
Q Consensus        84 l~g~~p~~~~~~l~~L~~l~l~~~~~~----~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  159 (305)
                      ++ .++.  +..++.|+.+++......    ....+.+..++++++.+....  .+..+++|+.|++++|.+.+.  ..+
T Consensus        97 ~~-~i~~--l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~l  169 (227)
T d1h6ua2          97 LK-NVSA--IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL--TPL  169 (227)
T ss_dssp             CS-CCGG--GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGG
T ss_pred             cc-cccc--ccccccccccccccccccccchhccccchhhhhchhhhhchhh--hhccccccccccccccccccc--hhh
Confidence            76 5553  666777776666542211    123566788888888876433  366788899999998888743  237


Q ss_pred             cCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCC
Q 040815          160 GNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNT  215 (305)
Q Consensus       160 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~  215 (305)
                      .++++|++|++++|++++ ++. +..+++|++|++++|++++ ++....+..+..+
T Consensus       170 ~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~-i~~l~~l~~L~~L  222 (227)
T d1h6ua2         170 ANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD-VSPLANTSNLFIV  222 (227)
T ss_dssp             TTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-CGGGTTCTTCCEE
T ss_pred             cccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCC-CcccccCCCCCEE
Confidence            888899999999998874 443 7788889999999998884 3433334444433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=1.3e-18  Score=140.38  Aligned_cols=174  Identities=19%  Similarity=0.243  Sum_probs=95.7

Q ss_pred             ccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcC
Q 040815            5 RSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRF   84 (305)
Q Consensus         5 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l   84 (305)
                      ++.+.+++.++.  .++.+|++|++++|.++.. + .+..+++|++|++++|.+++..+  +  +.+++|+.|++++|++
T Consensus        31 l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~~--~--~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          31 LKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--L--ANLKNLGWLFLDENKV  102 (210)
T ss_dssp             TTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--G--TTCTTCCEEECCSSCC
T ss_pred             hCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCccc--c--ccCccccccccccccc
Confidence            344445544432  2456777777777777543 2 35667777777777777766432  2  5577777777777777


Q ss_pred             cccCChhhhhccchhhhhhhcccc----ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815           85 SGNLPSKSFLCWNAMKIVNARRMM----TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG  160 (305)
Q Consensus        85 ~g~~p~~~~~~l~~L~~l~l~~~~----~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  160 (305)
                      + .+|.  +..+++|+.+++....    .....++.++.+++++|.+++  +..+..+++|+.+++++|++++ ++. +.
T Consensus       103 ~-~l~~--l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l~  175 (210)
T d1h6ta2         103 K-DLSS--LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP-LA  175 (210)
T ss_dssp             C-CGGG--GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GT
T ss_pred             c-cccc--ccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccc-ccc-cc
Confidence            6 5542  4444444444433211    011123445555566665542  2234455666666666666653 222 55


Q ss_pred             CCCCCCEEeCCCCcCCccCccccccCCCCCEEecc
Q 040815          161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVS  195 (305)
Q Consensus       161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~  195 (305)
                      ++++|++|++++|+++ .++ .+..+++|++|+++
T Consensus       176 ~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         176 GLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             TCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEE
T ss_pred             CCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEcc
Confidence            5666666666666655 333 35556666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=1.2e-19  Score=144.48  Aligned_cols=157  Identities=17%  Similarity=0.180  Sum_probs=125.2

Q ss_pred             CCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCcc
Q 040815           48 LNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRF  127 (305)
Q Consensus        48 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l  127 (305)
                      .++++.++++++.++ ..+    .+.+++|+|++|++++.++...|..                  ++.|+.|++++|.+
T Consensus        10 ~~~v~Cs~~~L~~iP-~~l----p~~l~~L~Ls~N~i~~~~~~~~f~~------------------l~~L~~L~L~~N~i   66 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIP-RDI----PLHTTELLLNDNELGRISSDGLFGR------------------LPHLVKLELKRNQL   66 (192)
T ss_dssp             TTEEECTTSCCSSCC-SCC----CTTCSEEECCSCCCCSBCCSCSGGG------------------CTTCCEEECCSSCC
T ss_pred             CCEEEEeCCCcCccC-CCC----CCCCCEEEeCCCCCcccccccccCC------------------CceEeeeecccccc
Confidence            468899999998653 322    2689999999999985676666665                  44577888999999


Q ss_pred             ccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCC
Q 040815          128 VGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGK  207 (305)
Q Consensus       128 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~  207 (305)
                      .+..+..+..+++|++|+|++|++++..|.+|.++++|++|+|++|+|++..++.|..+++|+++++++|++.+..+...
T Consensus        67 ~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~  146 (192)
T d1w8aa_          67 TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW  146 (192)
T ss_dssp             CCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH
T ss_pred             ccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH
Confidence            98889999999999999999999998888899999999999999999998888899999999999999999987654321


Q ss_pred             CCCccCCCccCCCCCCCCCC
Q 040815          208 QFATFDNTSFDGNSGLCGKP  227 (305)
Q Consensus       208 ~~~~l~~~~~~~n~~~c~~~  227 (305)
                      ....+....+.++...|..|
T Consensus       147 ~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_         147 FAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             HHHHHHHHCCSGGGCBBCSS
T ss_pred             HhhhhhhhcccCCCeEeCCC
Confidence            11223333455555556544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=9.5e-19  Score=153.52  Aligned_cols=182  Identities=24%  Similarity=0.371  Sum_probs=95.2

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN   81 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~   81 (305)
                      .+++++|.+++..|  +..+++|++|++++|.++. + ..+..+++|+.|++++|.+++..+  +  ..+++|+.|++++
T Consensus       201 ~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~--~~~~~L~~L~l~~  272 (384)
T d2omza2         201 SLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--L--SGLTKLTELKLGA  272 (384)
T ss_dssp             EEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--G--TTCTTCSEEECCS
T ss_pred             eeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--c--cccccCCEeeccC
Confidence            34555555554322  2344555555555555543 2 234555555566665555554332  1  3455556666655


Q ss_pred             CcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccC
Q 040815           82 NRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGN  161 (305)
Q Consensus        82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  161 (305)
                      |.++ .+++  +..                  +..++.++++.|.+++.  ..+..+++++.|++++|++++. + .+..
T Consensus       273 ~~l~-~~~~--~~~------------------~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l-~-~l~~  327 (384)
T d2omza2         273 NQIS-NISP--LAG------------------LTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDI-S-PVSS  327 (384)
T ss_dssp             SCCC-CCGG--GTT------------------CTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCC-G-GGGG
T ss_pred             cccC-CCCc--ccc------------------ccccccccccccccccc--cccchhcccCeEECCCCCCCCC-c-cccc
Confidence            5555 3322  222                  34455566666666532  2355566666666666666643 2 2556


Q ss_pred             CCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCC
Q 040815          162 LTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDG  219 (305)
Q Consensus       162 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~  219 (305)
                      +++|++|++++|++++ ++ .+..+++|++|++++|++++..| ...++.+..+.+.+
T Consensus       328 l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~  382 (384)
T d2omza2         328 LTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLND  382 (384)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCC
T ss_pred             CCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCC
Confidence            6666666666666653 33 35666666666666666664433 33344444444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=4.9e-19  Score=144.69  Aligned_cols=179  Identities=20%  Similarity=0.241  Sum_probs=142.7

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|++++|.|+. ++ .+..+++|++|++++|.+++..|  +..+++++++++++|.++...  .  +..+++|+.++++
T Consensus        44 ~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~--~--l~~l~~L~~l~l~  115 (227)
T d1h6ua2          44 TTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--A--IAGLQSIKTLDLT  115 (227)
T ss_dssp             CEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--G--GTTCTTCCEEECT
T ss_pred             CEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccccccccc--c--ccccccccccccc
Confidence            579999999994 54 68999999999999999986544  889999999999999987542  2  3679999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhcccc----ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMM----TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP  156 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~----~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  156 (305)
                      ++... .++.  +.....+..+.+....    .....++.|+.|++++|.+....  .+.++++|++|+|++|++++ ++
T Consensus       116 ~~~~~-~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~  189 (227)
T d1h6ua2         116 STQIT-DVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS  189 (227)
T ss_dssp             TSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG
T ss_pred             ccccc-ccch--hccccchhhhhchhhhhchhhhhccccccccccccccccccch--hhcccccceecccCCCccCC-Ch
Confidence            99887 3332  4555566655554421    12234678999999999987433  38899999999999999985 44


Q ss_pred             ccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccC
Q 040815          157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSD  196 (305)
Q Consensus       157 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~  196 (305)
                      . +.++++|++|+|++|++++ ++. +..+++|+.|++++
T Consensus       190 ~-l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         190 P-LASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             G-GGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEEE
T ss_pred             h-hcCCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEeeC
Confidence            3 8899999999999999995 443 88999999999974

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=2.5e-18  Score=137.61  Aligned_cols=163  Identities=21%  Similarity=0.301  Sum_probs=126.0

Q ss_pred             EccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCc
Q 040815            4 KRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR   83 (305)
Q Consensus         4 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~   83 (305)
                      .++.+.+++.++.  .++.++++|++++|.++. ++ .+..+++|++|++++|.+++..+  +  +.+++|++|++++|.
T Consensus        24 ~l~~~~~~~~~~~--~~l~~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~~~--l--~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          24 VLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--L--KNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HTTCSSTTSEECH--HHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--G--TTCTTCCEEECCSSC
T ss_pred             HhCCCCCCCccCH--HHhcCCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccCccc--c--cCCcccccccccccc
Confidence            3556666654432  467899999999999975 33 47889999999999999987643  3  789999999999998


Q ss_pred             CcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCC
Q 040815           84 FSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLT  163 (305)
Q Consensus        84 l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  163 (305)
                      +. .++.  +.+                  ++.|+.|++++|.+...  ..+..+++|+.|++++|++.. ++ .+..++
T Consensus        96 ~~-~~~~--l~~------------------l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~  150 (199)
T d2omxa2          96 IA-DITP--LAN------------------LTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLT  150 (199)
T ss_dssp             CC-CCGG--GTT------------------CTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCT
T ss_pred             cc-cccc--ccc------------------ccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-cc-cccccc
Confidence            87 5553  333                  45577788888887643  347788999999999998873 33 578889


Q ss_pred             CCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccC
Q 040815          164 NLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTG  201 (305)
Q Consensus       164 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  201 (305)
                      +|+.|++++|++++. + .+.++++|++|++++|+++.
T Consensus       151 ~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         151 SLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             TCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccccccCC-c-cccCCCCCCEEECCCCCCCC
Confidence            999999999998853 3 37888999999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=6.1e-18  Score=135.27  Aligned_cols=157  Identities=28%  Similarity=0.380  Sum_probs=128.9

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|++++|.++. +. .+..+++|++|++++|++++..|  ++++++|++|++++|.+....  .  +..++.|+.|+++
T Consensus        43 ~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~--l~~l~~L~~L~l~  114 (199)
T d2omxa2          43 TTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--P--LANLTNLTGLTLF  114 (199)
T ss_dssp             CEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--G--GTTCTTCSEEECC
T ss_pred             CEEECCCCCCCC-cc-ccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--c--ccccccccccccc
Confidence            579999999984 43 57889999999999999987543  899999999999999987653  2  3789999999999


Q ss_pred             CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG  160 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  160 (305)
                      +|... .++.  +..                  ++.|+.|++++|.+. .++ .+..+++|+.|++++|++++. + .++
T Consensus       115 ~~~~~-~~~~--~~~------------------l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l-~-~l~  169 (199)
T d2omxa2         115 NNQIT-DIDP--LKN------------------LTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDL-K-PLA  169 (199)
T ss_dssp             SSCCC-CCGG--GTT------------------CTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC-G-GGT
T ss_pred             ccccc-cccc--cch------------------hhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCC-c-ccc
Confidence            99887 4332  222                  456888899999987 444 588899999999999999854 3 488


Q ss_pred             CCCCCCEEeCCCCcCCccCccccccCCCCCEE
Q 040815          161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFF  192 (305)
Q Consensus       161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  192 (305)
                      ++++|++|++++|++++ ++ .+..+++|+.|
T Consensus       170 ~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         170 NLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             TCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             CCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            99999999999999984 54 57889988875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8.7e-19  Score=144.44  Aligned_cols=205  Identities=14%  Similarity=0.068  Sum_probs=138.6

Q ss_pred             EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccC-CCCCCCCCCCccEEEcc
Q 040815            2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIE-EPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~L~L~   80 (305)
                      +++.+++.++ .+|..+  .+++++|++++|+|+...+..|.++++|++|++++|.+...++ ..+  ..++.++.+++.
T Consensus        12 ~i~c~~~~l~-~iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f--~~l~~l~~l~~~   86 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF--SNLPKLHEIRIE   86 (242)
T ss_dssp             EEEEESCSCS-SCCSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSE--ESCTTCCEEEEE
T ss_pred             EEEEeCCCCC-CcCCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccc--cccccccccccc
Confidence            5677777777 667655  2578888888888875555578888888888888888765433 233  667888888875


Q ss_pred             C-CcCcccCChhhhhccchhhhhhhccccc-------cCcccccccEEEccCCccccccchhhhCCC-CCCEEecCCccc
Q 040815           81 N-NRFSGNLPSKSFLCWNAMKIVNARRMMT-------YNKIPDILAGIILSNNRFVGAIPASIANLK-GLQVLNLQYNNL  151 (305)
Q Consensus        81 ~-n~l~g~~p~~~~~~l~~L~~l~l~~~~~-------~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l  151 (305)
                      . |++. .++...|.++++|+.+++.....       ....+..+..+...++.+....+..+..++ .++.|++++|++
T Consensus        87 ~~n~l~-~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          87 KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             CCTTCC-EECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cccccc-ccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            4 5666 66666688888888887765311       111234455556677777755556666554 788899999999


Q ss_pred             cccCCccccCCCCCCE-EeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCC
Q 040815          152 QGLIPSSLGNLTNLES-LDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNT  215 (305)
Q Consensus       152 ~~~~p~~~~~l~~L~~-L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~  215 (305)
                      +...+..+ ...++++ +++++|+++...+..|.++++|++|++++|.++ .+|.. .+..+..+
T Consensus       166 ~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~-~~~~l~~L  227 (242)
T d1xwdc1         166 QEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY-GLENLKKL  227 (242)
T ss_dssp             CEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSS-SCTTCCEE
T ss_pred             cccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHH-HHcCCccc
Confidence            86555444 4455544 467888888544556888999999999999998 45542 24444333

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=6.2e-18  Score=136.42  Aligned_cols=176  Identities=18%  Similarity=0.196  Sum_probs=125.5

Q ss_pred             CcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhh
Q 040815           24 LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVN  103 (305)
Q Consensus        24 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~  103 (305)
                      +...+++.+.+++.++.  ..+.+|+.|++++|.++...  .  +..+++|++|++++|.++ .+++  +..+++|+.|+
T Consensus        26 ~i~~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~--~--l~~l~~L~~L~L~~n~i~-~l~~--~~~l~~L~~L~   96 (210)
T d1h6ta2          26 TIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--G--IQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLF   96 (210)
T ss_dssp             HHHHHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT--T--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEE
T ss_pred             HHHHHhCcCccCCccCH--HHhcCccEEECcCCCCCCch--h--HhhCCCCCEEeCCCcccc-Cccc--cccCccccccc
Confidence            33446777777765553  34678999999999998653  2  367999999999999999 6664  67788888888


Q ss_pred             hcccc----ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccC
Q 040815          104 ARRMM----TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRI  179 (305)
Q Consensus       104 l~~~~----~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  179 (305)
                      +.++.    .....++.|+.|++++|.+. .+ ..+..++.++.+++++|.+++  +..+..+++|+++++++|++++ +
T Consensus        97 l~~n~i~~l~~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i  171 (210)
T d1h6ta2          97 LDENKVKDLSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-I  171 (210)
T ss_dssp             CCSSCCCCGGGGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-C
T ss_pred             ccccccccccccccccccccccccccccc-cc-ccccccccccccccccccccc--cccccccccccccccccccccc-c
Confidence            76532    11233567888888888876 33 346778888888888888874  2346678888888888888874 3


Q ss_pred             ccccccCCCCCEEeccCCcccCCCCCCCCCCccCCC
Q 040815          180 PQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNT  215 (305)
Q Consensus       180 p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~  215 (305)
                      +. +..+++|++|++++|+++ .+|....++++..+
T Consensus       172 ~~-l~~l~~L~~L~Ls~N~i~-~l~~l~~l~~L~~L  205 (210)
T d1h6ta2         172 VP-LAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVL  205 (210)
T ss_dssp             GG-GTTCTTCCEEECCSSCCC-BCGGGTTCTTCSEE
T ss_pred             cc-ccCCCCCCEEECCCCCCC-CChhhcCCCCCCEE
Confidence            33 778888888888888887 34543344444433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=8.3e-18  Score=138.45  Aligned_cols=192  Identities=16%  Similarity=0.127  Sum_probs=140.3

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCc-ChhccCCCCCCEEEccC-ccCCcccCCCCCCCCCCCccEEE
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTF-PSWLGTLPKLNVLILRS-NIFYGVIEEPRTGCGFSKLRIID   78 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~   78 (305)
                      ++|+|++|+|+...+.+|.++++|++|++++|.+...+ +..|..++++++|++.. |.+....+..+  .++++|+.++
T Consensus        32 ~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~--~~l~~L~~l~  109 (242)
T d1xwdc1          32 IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF--QNLPNLQYLL  109 (242)
T ss_dssp             SEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE--ECCTTCCEEE
T ss_pred             CEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccc--cccccccccc
Confidence            57999999999666668999999999999999987654 45788999999998764 67777666666  8899999999


Q ss_pred             ccCCcCcccCChh-hhhccchhhhhhhcc-------ccccCcccccccEEEccCCccccccchhhhCCCCCCEE-ecCCc
Q 040815           79 LSNNRFSGNLPSK-SFLCWNAMKIVNARR-------MMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVL-NLQYN  149 (305)
Q Consensus        79 L~~n~l~g~~p~~-~~~~l~~L~~l~l~~-------~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L-~Ls~N  149 (305)
                      +++|.+. ..+.. .+..+..+..+....       ...+......++.|++++|.++. ++.......+++.+ ++++|
T Consensus       110 l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n  187 (242)
T d1xwdc1         110 ISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNN  187 (242)
T ss_dssp             EESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCT
T ss_pred             cchhhhc-ccccccccccccccccccccccccccccccccccccccceeeecccccccc-cccccccchhhhcccccccc
Confidence            9999998 55432 122333333322221       11122234578889999999984 44444455665555 57888


Q ss_pred             cccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccC
Q 040815          150 NLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSD  196 (305)
Q Consensus       150 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~  196 (305)
                      +++...+..|.++++|++|++++|+++...+..|.++++|+.+++.+
T Consensus       188 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             ccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            99865556789999999999999999955555677777777776643

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.65  E-value=5.6e-15  Score=127.31  Aligned_cols=88  Identities=19%  Similarity=0.262  Sum_probs=62.6

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|||++|.++ .+|+.   .++|++|++++|+|+ .+|+.   +.+|+.|++++|.++.+.. .     .+.|++|+++
T Consensus        41 ~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l~~-l-----p~~L~~L~L~  106 (353)
T d1jl5a_          41 HELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALSD-L-----PPLLEYLGVS  106 (353)
T ss_dssp             SEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCCS-C-----CTTCCEEECC
T ss_pred             CEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchhhh-h-----cccccccccc
Confidence            47999999998 57753   578999999999997 56754   4577888888887765421 1     1357778888


Q ss_pred             CCcCcccCChhhhhccchhhhhhhc
Q 040815           81 NNRFSGNLPSKSFLCWNAMKIVNAR  105 (305)
Q Consensus        81 ~n~l~g~~p~~~~~~l~~L~~l~l~  105 (305)
                      +|.+. .+|.  ++.+++|+.+++.
T Consensus       107 ~n~l~-~lp~--~~~l~~L~~L~l~  128 (353)
T d1jl5a_         107 NNQLE-KLPE--LQNSSFLKIIDVD  128 (353)
T ss_dssp             SSCCS-SCCC--CTTCTTCCEEECC
T ss_pred             ccccc-cccc--hhhhccceeeccc
Confidence            77777 6664  4566666666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=7.3e-16  Score=118.71  Aligned_cols=69  Identities=17%  Similarity=0.181  Sum_probs=49.5

Q ss_pred             hccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChh
Q 040815           17 SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSK   91 (305)
Q Consensus        17 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~   91 (305)
                      .+.++..+++|+|++|+|+. ++..+..+++|+.|+|++|.++...  .+  ..+++|++|++++|.++ .+++.
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l~--~~--~~l~~L~~L~ls~N~i~-~l~~~   81 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLD--GF--PLLRRLKTLLVNNNRIC-RIGEG   81 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEEC--CC--CCCSSCCEEECCSSCCC-EECSC
T ss_pred             hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCccC--Cc--ccCcchhhhhccccccc-CCCcc
Confidence            45677788888888888864 4555667788888888888887542  23  66778888888888777 55543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=2.5e-15  Score=110.27  Aligned_cols=81  Identities=21%  Similarity=0.219  Sum_probs=67.6

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      |+|||++|+++ .++ .+..+++|++|++++|.|+ .+|..|+.+++|++|++++|.++...  .+  ..+++|+.|+++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~--~~--~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD--GV--ANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG--GG--TTCSSCCEEECC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccC--cc--ccccccCeEECC
Confidence            68999999998 555 4889999999999999997 56778889999999999999998653  23  778899999999


Q ss_pred             CCcCcccCC
Q 040815           81 NNRFSGNLP   89 (305)
Q Consensus        81 ~n~l~g~~p   89 (305)
                      +|+++ .++
T Consensus        74 ~N~i~-~~~   81 (124)
T d1dcea3          74 NNRLQ-QSA   81 (124)
T ss_dssp             SSCCC-SSS
T ss_pred             CCccC-CCC
Confidence            99887 554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=8.4e-16  Score=118.35  Aligned_cols=129  Identities=19%  Similarity=0.177  Sum_probs=99.1

Q ss_pred             hccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEE
Q 040815           41 WLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGI  120 (305)
Q Consensus        41 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L  120 (305)
                      .|.+..++++|+|++|+|+.+ +..+  ..+++|+.|||++|.++ .++.  |..                  ++.|+.|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i-~~~~--~~l~~L~~L~Ls~N~i~-~l~~--~~~------------------l~~L~~L   68 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVI-ENLG--ATLDQFDAIDFSDNEIR-KLDG--FPL------------------LRRLKTL   68 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGG--GGTTCCSEEECCSSCCC-EECC--CCC------------------CSSCCEE
T ss_pred             hccCcCcCcEEECCCCCCCcc-Cccc--cccccCCEEECCCCCCC-ccCC--ccc------------------Ccchhhh
Confidence            356788899999999999876 3333  66889999999999998 6642  332                  4568888


Q ss_pred             EccCCccccccchhhhCCCCCCEEecCCccccccCC-ccccCCCCCCEEeCCCCcCCccCc----cccccCCCCCEEec
Q 040815          121 ILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP-SSLGNLTNLESLDLSNKKFAGRIP----QQLVELTFLEFFNV  194 (305)
Q Consensus       121 ~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~l  194 (305)
                      ++++|.++...+..+..+++|+.|++++|+++.... ..+..+++|++|++++|.++. .|    ..+..+|+|++||-
T Consensus        69 ~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          69 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             ECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETT
T ss_pred             hcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeCC
Confidence            899999986555566788999999999999874321 357788999999999998873 33    35777899998873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=7.5e-15  Score=107.68  Aligned_cols=104  Identities=28%  Similarity=0.391  Sum_probs=86.5

Q ss_pred             cEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccccc
Q 040815           75 RIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGL  154 (305)
Q Consensus        75 ~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  154 (305)
                      |.|||++|+++ .++.  +..                  +..|++|++++|.++ .+|..++.+++|++|++++|.++. 
T Consensus         1 R~L~Ls~n~l~-~l~~--l~~------------------l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-   57 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH--LEQ------------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-   57 (124)
T ss_dssp             SEEECTTSCCS-SCCC--GGG------------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred             CEEEcCCCCCC-CCcc--ccc------------------CCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-
Confidence            57899999998 6653  333                  456888889999998 678889999999999999999994 


Q ss_pred             CCccccCCCCCCEEeCCCCcCCccC-ccccccCCCCCEEeccCCcccCC
Q 040815          155 IPSSLGNLTNLESLDLSNKKFAGRI-PQQLVELTFLEFFNVSDNYLTGP  202 (305)
Q Consensus       155 ~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~  202 (305)
                      +| .+..+++|++|++++|+++... ...+..+++|+.+++++|+++..
T Consensus        58 l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          58 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            45 4899999999999999998543 25688899999999999999843

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7.6e-16  Score=129.72  Aligned_cols=176  Identities=18%  Similarity=0.150  Sum_probs=112.3

Q ss_pred             CCCCCcEEeCCCcccCCC-cChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCC-cCcccCChhhhhccc
Q 040815           20 NCSKLEFLGLGNYQISDT-FPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNN-RFSGNLPSKSFLCWN   97 (305)
Q Consensus        20 ~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~g~~p~~~~~~l~   97 (305)
                      ....|++||++++.++.. +...+..+++|++|+|+++.++......+  ..+++|+.|+++++ .++..--......++
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l--~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH--TTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHH--hcCCCCcCccccccccccccccchhhHHHH
Confidence            345667777776666532 23345566677777777666554333333  45666777777664 333110011234456


Q ss_pred             hhhhhhhcccccc---------CcccccccEEEccCC--ccccc-cchhhhCCCCCCEEecCCc-cccccCCccccCCCC
Q 040815           98 AMKIVNARRMMTY---------NKIPDILAGIILSNN--RFVGA-IPASIANLKGLQVLNLQYN-NLQGLIPSSLGNLTN  164 (305)
Q Consensus        98 ~L~~l~l~~~~~~---------~~~~~~L~~L~ls~n--~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~  164 (305)
                      +|+.|+++++..+         ....+.|+.|+++++  .++.. +.....++++|++|++++| .+++.....+..+++
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~  201 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY  201 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCc
Confidence            6666666542211         122467899999875  34322 3334467899999999986 577777778888999


Q ss_pred             CCEEeCCCC-cCCccCccccccCCCCCEEeccCC
Q 040815          165 LESLDLSNK-KFAGRIPQQLVELTFLEFFNVSDN  197 (305)
Q Consensus       165 L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~l~~N  197 (305)
                      |++|++++| .+++.....+..+++|+.|+++++
T Consensus       202 L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            999999995 677776677888999999999876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.5e-15  Score=126.48  Aligned_cols=195  Identities=15%  Similarity=0.132  Sum_probs=98.8

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCccc-CCCCCCCCCCCccEEEc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVI-EEPRTGCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~l~~L~~L~L   79 (305)
                      +.|||+++.+.......+.. ..+..+.++...+..... ......+|++|+++++.++... ...+  ..+++|++|++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~--~~c~~L~~L~L   78 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGIL--SQCSKLQNLSL   78 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHH--TTBCCCSEEEC
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHH--HhCCCcccccc
Confidence            35666666654332222211 234455555554433222 2223456777777766654321 1112  45667777777


Q ss_pred             cCCcCcccCChhhhhccchhhhhhhcccccc--------CcccccccEEEccCC-ccccc-cchhhhC-CCCCCEEecCC
Q 040815           80 SNNRFSGNLPSKSFLCWNAMKIVNARRMMTY--------NKIPDILAGIILSNN-RFVGA-IPASIAN-LKGLQVLNLQY  148 (305)
Q Consensus        80 ~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~--------~~~~~~L~~L~ls~n-~l~~~-~p~~~~~-l~~L~~L~Ls~  148 (305)
                      +++.++...+. .+..+++|+.|+++++..+        ...++.|++|+++++ .++.. +...+.. .+.|+.|++++
T Consensus        79 ~~~~l~~~~~~-~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~  157 (284)
T d2astb2          79 EGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  157 (284)
T ss_dssp             TTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             cccCCCcHHHH-HHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcc
Confidence            77766533332 2555666666666553221        123456777777664 33321 1222222 35677777765


Q ss_pred             c--ccccc-CCccccCCCCCCEEeCCCC-cCCccCccccccCCCCCEEeccCC-ccc
Q 040815          149 N--NLQGL-IPSSLGNLTNLESLDLSNK-KFAGRIPQQLVELTFLEFFNVSDN-YLT  200 (305)
Q Consensus       149 N--~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~l~~N-~l~  200 (305)
                      +  .++.. +...+..+++|++|++++| .+++.....+..+++|++|+++++ .++
T Consensus       158 ~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~  214 (284)
T d2astb2         158 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII  214 (284)
T ss_dssp             CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             cccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCC
Confidence            3  23321 2222345666777777664 455555556666677777777663 444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.55  E-value=9.3e-14  Score=119.50  Aligned_cols=202  Identities=23%  Similarity=0.226  Sum_probs=118.3

Q ss_pred             CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815            1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~   80 (305)
                      ++|+|++|+|+ .+|+.   +.+|+.|++++|+++. +++.   .+.|++|++++|.++... . +  ..+++|+.|+++
T Consensus        61 ~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~l---p~~L~~L~L~~n~l~~lp-~-~--~~l~~L~~L~l~  128 (353)
T d1jl5a_          61 ESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKLP-E-L--QNSSFLKIIDVD  128 (353)
T ss_dssp             SEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSCC-C-C--TTCTTCCEEECC
T ss_pred             CEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhhh---cccccccccccccccccc-c-h--hhhccceeeccc
Confidence            57999999999 67754   4688899999998863 3321   246899999999887553 2 2  567889999998


Q ss_pred             CCcCcccCChhh------------------hhccchhhhhhhccc------------------------cccCccccccc
Q 040815           81 NNRFSGNLPSKS------------------FLCWNAMKIVNARRM------------------------MTYNKIPDILA  118 (305)
Q Consensus        81 ~n~l~g~~p~~~------------------~~~l~~L~~l~l~~~------------------------~~~~~~~~~L~  118 (305)
                      +|.+. ..+...                  +..+..++.+++...                        ......++.++
T Consensus       129 ~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~  207 (353)
T d1jl5a_         129 NNSLK-KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT  207 (353)
T ss_dssp             SSCCS-CCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCC
T ss_pred             ccccc-ccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccccccccccccc
Confidence            88776 333210                  111222222222110                        00011245566


Q ss_pred             EEEccCCccccccchhhhC-----------------CCCCCEEecCCcccccc----------------CCccccCCCCC
Q 040815          119 GIILSNNRFVGAIPASIAN-----------------LKGLQVLNLQYNNLQGL----------------IPSSLGNLTNL  165 (305)
Q Consensus       119 ~L~ls~n~l~~~~p~~~~~-----------------l~~L~~L~Ls~N~l~~~----------------~p~~~~~l~~L  165 (305)
                      .+++++|... .++.....                 ...+...++..+.+.+.                ++.....+++|
T Consensus       208 ~l~l~~n~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L  286 (353)
T d1jl5a_         208 TIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSL  286 (353)
T ss_dssp             EEECCSSCCS-SCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTC
T ss_pred             cccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccCCCC
Confidence            6666666554 22221111                 11223333333222210                01111234689


Q ss_pred             CEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCC
Q 040815          166 ESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL  223 (305)
Q Consensus       166 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~  223 (305)
                      ++|++++|+++ .+|..   +++|+.|++++|+|+ .+|..  ..++..+.+.+|+..
T Consensus       287 ~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~--~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         287 EELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL--PQNLKQLHVEYNPLR  337 (353)
T ss_dssp             CEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC--CTTCCEEECCSSCCS
T ss_pred             CEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc--cCCCCEEECcCCcCC
Confidence            99999999988 66653   578889999999988 56652  346777778888743

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.7e-14  Score=109.05  Aligned_cols=112  Identities=19%  Similarity=0.146  Sum_probs=89.1

Q ss_pred             cccEEEccCCccccccchhhhCCCCCCEEecCCc-cccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEec
Q 040815          116 ILAGIILSNNRFVGAIPASIANLKGLQVLNLQYN-NLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNV  194 (305)
Q Consensus       116 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l  194 (305)
                      ..+.++.+++.+. ..|..+..+++|++|++++| .++...+.+|.++++|+.|+|++|+|+...+..|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3456778888887 67777888889999999766 588666778899999999999999999777888899999999999


Q ss_pred             cCCcccCCCCCCCCCCccCCCccCCCCCCCCCCC
Q 040815          195 SDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPL  228 (305)
Q Consensus       195 ~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~  228 (305)
                      ++|+++...+.......+..+.+.+||+.|+|..
T Consensus        88 s~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          88 SFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGG
T ss_pred             cCCCCcccChhhhccccccccccCCCcccCCchH
Confidence            9999984444333344677788899999998853

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.46  E-value=1.2e-15  Score=121.49  Aligned_cols=145  Identities=23%  Similarity=0.301  Sum_probs=104.7

Q ss_pred             CCCcEEeCCCc--ccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchh
Q 040815           22 SKLEFLGLGNY--QISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAM   99 (305)
Q Consensus        22 ~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L   99 (305)
                      ..++.+++.++  .+ ..++..+..+++|++|+|++|+|+.+ + .+  ..+++|+.|++++|.++ .+|.. +..    
T Consensus        23 ~~~~~~~l~~~~~~i-~~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l--~~l~~L~~L~Ls~N~i~-~i~~~-~~~----   91 (198)
T d1m9la_          23 TEAEKVELHGMIPPI-EKMDATLSTLKACKHLALSTNNIEKI-S-SL--SGMENLRILSLGRNLIK-KIENL-DAV----   91 (198)
T ss_dssp             TTCSCEECCBCCTTC-CCCHHHHHHTTTCCEEECSEEEESCC-C-CH--HHHTTCCEEECCEEEEC-SCSSH-HHH----
T ss_pred             cccceeeeecccCch-hhhhhHHhcccccceeECcccCCCCc-c-cc--cCCccccChhhcccccc-ccccc-ccc----
Confidence            44556666654  23 24567788899999999999988754 2 23  67889999999999887 66632 221    


Q ss_pred             hhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC-ccccCCCCCCEEeCCCCcCCcc
Q 040815          100 KIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP-SSLGNLTNLESLDLSNKKFAGR  178 (305)
Q Consensus       100 ~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~  178 (305)
                                    ++.|+.|++++|.++. ++ .+..+++|+.|++++|+++.... ..+..+++|+.|++++|.+...
T Consensus        92 --------------~~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_          92 --------------ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             --------------HHHCCEEECSEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             --------------cccccccccccccccc-cc-cccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence                          3457788899998873 43 47788899999999999874321 4578899999999999988654


Q ss_pred             Ccc----------ccccCCCCCEEe
Q 040815          179 IPQ----------QLVELTFLEFFN  193 (305)
Q Consensus       179 ~p~----------~~~~l~~L~~L~  193 (305)
                      .+.          .+..+|+|+.||
T Consensus       156 ~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         156 YKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccchhhHHHHHHHHCCCcCEeC
Confidence            332          256788888887

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=9.6e-14  Score=105.92  Aligned_cols=87  Identities=17%  Similarity=0.043  Sum_probs=50.5

Q ss_pred             EEccCCccccccchhccCCCCCcEEeCCCc-ccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815            3 AKRSHNLFEGRIPRSLINCSKLEFLGLGNY-QISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN   81 (305)
Q Consensus         3 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~   81 (305)
                      ++.+++.+. ..|..+..+++|++|++++| .++...+.+|.++++|+.|+|++|+|+.+.+..|  ..+++|++|+|++
T Consensus        13 l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f--~~l~~L~~L~Ls~   89 (156)
T d2ifga3          13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF--HFTPRLSRLNLSF   89 (156)
T ss_dssp             EECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGG--GSCSCCCEEECCS
T ss_pred             EEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccc--cccccccceeccC
Confidence            455555555 44555666666666666544 3554444556666666666666666665555444  5566666666666


Q ss_pred             CcCcccCChhhh
Q 040815           82 NRFSGNLPSKSF   93 (305)
Q Consensus        82 n~l~g~~p~~~~   93 (305)
                      |+++ .+|...|
T Consensus        90 N~l~-~l~~~~~  100 (156)
T d2ifga3          90 NALE-SLSWKTV  100 (156)
T ss_dssp             SCCS-CCCSTTT
T ss_pred             CCCc-ccChhhh
Confidence            6666 5555433

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.44  E-value=8.7e-16  Score=122.29  Aligned_cols=136  Identities=22%  Similarity=0.220  Sum_probs=104.6

Q ss_pred             ccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhh
Q 040815           13 RIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKS   92 (305)
Q Consensus        13 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~   92 (305)
                      .++.++..+++|++|+|++|+|+. ++ .+..+++|++|+|++|.++.+ +...  ..+++|+.|++++|+++ .++.  
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i-~~~~--~~~~~L~~L~l~~N~i~-~l~~--  110 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENLD--AVADTLEELWISYNQIA-SLSG--  110 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSC-SSHH--HHHHHCCEEECSEEECC-CHHH--
T ss_pred             hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccccc-cccc--ccccccccccccccccc-cccc--
Confidence            456789999999999999999975 44 588899999999999999754 2222  34568999999999998 5532  


Q ss_pred             hhccchhhhhhhccccccCcccccccEEEccCCccccccc-hhhhCCCCCCEEecCCccccccCCcc----------ccC
Q 040815           93 FLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIP-ASIANLKGLQVLNLQYNNLQGLIPSS----------LGN  161 (305)
Q Consensus        93 ~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------~~~  161 (305)
                      +..                  +++|+.|++++|.++.... ..+..+++|+.|+|++|.+....+..          +..
T Consensus       111 ~~~------------------l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~  172 (198)
T d1m9la_         111 IEK------------------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             HHH------------------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHH
T ss_pred             ccc------------------cccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHH
Confidence            332                  3457888899999984322 46889999999999999987554432          567


Q ss_pred             CCCCCEEeCCCCcCC
Q 040815          162 LTNLESLDLSNKKFA  176 (305)
Q Consensus       162 l~~L~~L~L~~N~l~  176 (305)
                      +++|+.||  +..++
T Consensus       173 lp~L~~LD--~~~I~  185 (198)
T d1m9la_         173 LPNLKKLD--GMPVD  185 (198)
T ss_dssp             CSSCCEES--SGGGT
T ss_pred             CCCcCEeC--CccCC
Confidence            89999987  44444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.5e-14  Score=125.67  Aligned_cols=85  Identities=19%  Similarity=0.119  Sum_probs=53.6

Q ss_pred             CEEEccCCcccc----ccchhccCCCCCcEEeCCCcccCCC----cChhcc-CCCCCCEEEccCccCCcccCC--CCCCC
Q 040815            1 MEAKRSHNLFEG----RIPRSLINCSKLEFLGLGNYQISDT----FPSWLG-TLPKLNVLILRSNIFYGVIEE--PRTGC   69 (305)
Q Consensus         1 ~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~-~l~~L~~L~L~~n~l~~~~~~--~~~~~   69 (305)
                      ++|+|++|.++.    .+...+..+++|++|||++|.|+..    +...+. ...+|++|+|++|.++.....  ...+.
T Consensus        30 ~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~  109 (460)
T d1z7xw1          30 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR  109 (460)
T ss_dssp             SEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT
T ss_pred             CEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhh
Confidence            467777777763    2445667788888888888877532    222222 234688888888887643110  01125


Q ss_pred             CCCCccEEEccCCcCc
Q 040815           70 GFSKLRIIDLSNNRFS   85 (305)
Q Consensus        70 ~l~~L~~L~L~~n~l~   85 (305)
                      .+++|+.|++++|.+.
T Consensus       110 ~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         110 TLPTLQELHLSDNLLG  125 (460)
T ss_dssp             SCTTCCEEECCSSBCH
T ss_pred             ccccccccccccccch
Confidence            6788888888888764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.32  E-value=6.4e-13  Score=114.48  Aligned_cols=200  Identities=20%  Similarity=0.174  Sum_probs=112.8

Q ss_pred             CEEEccCCccccc----cchhccCCCCCcEEeCCCcccCCC----------cChhccCCCCCCEEEccCccCCcccCCCC
Q 040815            1 MEAKRSHNLFEGR----IPRSLINCSKLEFLGLGNYQISDT----------FPSWLGTLPKLNVLILRSNIFYGVIEEPR   66 (305)
Q Consensus         1 ~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----------~p~~~~~l~~L~~L~L~~n~l~~~~~~~~   66 (305)
                      ++|+|++|.+...    +...+...++|+.++++++.....          +...+...++|+.|+|++|.++......+
T Consensus        34 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  113 (344)
T d2ca6a1          34 KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL  113 (344)
T ss_dssp             CEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHH
T ss_pred             CEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccch
Confidence            4688888887643    344566778888888887755322          12234567888899998888754311111


Q ss_pred             --CCCCCCCccEEEccCCcCcccCChhhhh------------ccchhhhhhhccccc----------cCcccccccEEEc
Q 040815           67 --TGCGFSKLRIIDLSNNRFSGNLPSKSFL------------CWNAMKIVNARRMMT----------YNKIPDILAGIIL  122 (305)
Q Consensus        67 --~~~~l~~L~~L~L~~n~l~g~~p~~~~~------------~l~~L~~l~l~~~~~----------~~~~~~~L~~L~l  122 (305)
                        .+...+.|+.|++++|.+...-......            ....++.+.++....          .....+.++.|++
T Consensus       114 ~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L  193 (344)
T d2ca6a1         114 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM  193 (344)
T ss_dssp             HHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEEC
T ss_pred             hhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccccc
Confidence              1134678889999888775111111001            112222232222100          0112456777777


Q ss_pred             cCCccccc-----cchhhhCCCCCCEEecCCcccccc----CCccccCCCCCCEEeCCCCcCCccCccc----cc--cCC
Q 040815          123 SNNRFVGA-----IPASIANLKGLQVLNLQYNNLQGL----IPSSLGNLTNLESLDLSNKKFAGRIPQQ----LV--ELT  187 (305)
Q Consensus       123 s~n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~----~~--~l~  187 (305)
                      ++|.++..     +...+..+++|+.|+|++|.++..    +...+..+++|++|+|++|.+++.....    +.  ..+
T Consensus       194 ~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~  273 (344)
T d2ca6a1         194 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI  273 (344)
T ss_dssp             CSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSC
T ss_pred             ccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCC
Confidence            77776532     223345567777777777776532    2334556677777777777776542222    22  235


Q ss_pred             CCCEEeccCCccc
Q 040815          188 FLEFFNVSDNYLT  200 (305)
Q Consensus       188 ~L~~L~l~~N~l~  200 (305)
                      .|++||+++|.++
T Consensus       274 ~L~~L~ls~N~i~  286 (344)
T d2ca6a1         274 GLQTLRLQYNEIE  286 (344)
T ss_dssp             CCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCC
Confidence            5777777777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.27  E-value=8.3e-13  Score=113.79  Aligned_cols=201  Identities=17%  Similarity=0.157  Sum_probs=132.0

Q ss_pred             CEEEccCCccccc----------cchhccCCCCCcEEeCCCcccCCC----cChhccCCCCCCEEEccCccCCcccCCCC
Q 040815            1 MEAKRSHNLFEGR----------IPRSLINCSKLEFLGLGNYQISDT----FPSWLGTLPKLNVLILRSNIFYGVIEEPR   66 (305)
Q Consensus         1 ~~L~Ls~n~l~~~----------~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~~~~   66 (305)
                      +.|+++++.....          +...+..+++|+.|+|++|.++..    +...+...++|+.|++++|.+.......+
T Consensus        62 ~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l  141 (344)
T d2ca6a1          62 EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI  141 (344)
T ss_dssp             CEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH
T ss_pred             CEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccc
Confidence            3577776654311          233456788899999999988754    33344567889999999887642100000


Q ss_pred             -----------CCCCCCCccEEEccCCcCcccCC---hhhhhccchhhhhhhcccc-----------ccCcccccccEEE
Q 040815           67 -----------TGCGFSKLRIIDLSNNRFSGNLP---SKSFLCWNAMKIVNARRMM-----------TYNKIPDILAGII  121 (305)
Q Consensus        67 -----------~~~~l~~L~~L~L~~n~l~g~~p---~~~~~~l~~L~~l~l~~~~-----------~~~~~~~~L~~L~  121 (305)
                                 .....+.|+.+++++|.+...--   ...+.....++.+++..+.           ......+.|+.|+
T Consensus       142 ~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~  221 (344)
T d2ca6a1         142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD  221 (344)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEE
T ss_pred             cccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccc
Confidence                       00245678888888887752111   1123445566666665421           1123357799999


Q ss_pred             ccCCccccc----cchhhhCCCCCCEEecCCccccccCCc----cccC--CCCCCEEeCCCCcCCccC----ccccc-cC
Q 040815          122 LSNNRFVGA----IPASIANLKGLQVLNLQYNNLQGLIPS----SLGN--LTNLESLDLSNKKFAGRI----PQQLV-EL  186 (305)
Q Consensus       122 ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~--l~~L~~L~L~~N~l~~~~----p~~~~-~l  186 (305)
                      +++|.++..    +...+..+++|++|+|++|.+++....    .+..  .+.|++|++++|.++...    ...+. ..
T Consensus       222 Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~  301 (344)
T d2ca6a1         222 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM  301 (344)
T ss_dssp             CCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC
T ss_pred             cccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccC
Confidence            999998643    445677889999999999999864322    2322  467999999999987532    33342 57


Q ss_pred             CCCCEEeccCCcccC
Q 040815          187 TFLEFFNVSDNYLTG  201 (305)
Q Consensus       187 ~~L~~L~l~~N~l~~  201 (305)
                      +.|++|++++|.+..
T Consensus       302 ~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         302 PDLLFLELNGNRFSE  316 (344)
T ss_dssp             TTCCEEECTTSBSCT
T ss_pred             CCCCEEECCCCcCCC
Confidence            889999999999974

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=8.3e-11  Score=104.03  Aligned_cols=68  Identities=19%  Similarity=0.189  Sum_probs=35.4

Q ss_pred             ccCCCCCcEEeCCCcccCCC-----cChhccCCCCCCEEEccCccCCcccCC--CCCCCCCCCccEEEccCCcCc
Q 040815           18 LINCSKLEFLGLGNYQISDT-----FPSWLGTLPKLNVLILRSNIFYGVIEE--PRTGCGFSKLRIIDLSNNRFS   85 (305)
Q Consensus        18 l~~l~~L~~L~L~~n~l~~~-----~p~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~l~~L~~L~L~~n~l~   85 (305)
                      +.....++.+++++|.+...     ....+.....++.|++++|.+......  ...+...+.++.+++++|.+.
T Consensus       222 l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~  296 (460)
T d1z7xw1         222 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  296 (460)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             ccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34556677777776655321     122233455677777777666432110  001123556667777776665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=9e-10  Score=83.91  Aligned_cols=121  Identities=22%  Similarity=0.113  Sum_probs=69.5

Q ss_pred             CCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCCh--hhhhccchhh
Q 040815           23 KLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPS--KSFLCWNAMK  100 (305)
Q Consensus        23 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~--~~~~~l~~L~  100 (305)
                      ..+.|++++....   + .+..+..+..+...++..... +..+  ..++.|++|+|++|+++ .++.  ..+..     
T Consensus        23 ~~~~Ldls~l~~~---~-~l~~~~~~~~l~~~~~~~~~l-~~~~--~~~~~L~~L~Ls~N~i~-~l~~~~~~~~~-----   89 (162)
T d1koha1          23 SQQALDLKGLRSD---P-DLVAQNIDVVLNRRSSMAATL-RIIE--ENIPELLSLNLSNNRLY-RLDDMSSIVQK-----   89 (162)
T ss_dssp             SSCCBCCCCCSSC---T-TTTTTTCCCCTTSHHHHHHHH-HHHH--HHCTTCCCCCCCSSCCC-CCSGGGTHHHH-----
T ss_pred             hhCeeecccCCCC---c-hhhhccchhhcchhhhHhhhh-HHHH--HhCCCCCEeeCCCcccc-CCchhHHHHhh-----
Confidence            4555666655432   1 233344444444444433221 1111  35678888888888887 5542  11222     


Q ss_pred             hhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCc-------cccCCCCCCEEe
Q 040815          101 IVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPS-------SLGNLTNLESLD  169 (305)
Q Consensus       101 ~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-------~~~~l~~L~~L~  169 (305)
                                   +++|+.|++++|.++...+..+.....|+.|++++|.+......       .+..+++|+.||
T Consensus        90 -------------l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          90 -------------APNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             -------------STTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             -------------CCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence                         34566667888888744333444556788888888888754432       255678888887

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.2e-08  Score=77.54  Aligned_cols=80  Identities=21%  Similarity=0.168  Sum_probs=48.6

Q ss_pred             cccccEEEccCCccccc--cchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCcc-------ccc
Q 040815          114 PDILAGIILSNNRFVGA--IPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQ-------QLV  184 (305)
Q Consensus       114 ~~~L~~L~ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-------~~~  184 (305)
                      ++.|++|++++|+++..  ++..+..+++|+.|+|++|.++...+-.+.....|+.|++++|.+......       .+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            45566677777777643  234456677777777777777743332333445677777777777654332       244


Q ss_pred             cCCCCCEEe
Q 040815          185 ELTFLEFFN  193 (305)
Q Consensus       185 ~l~~L~~L~  193 (305)
                      .+|+|+.||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            567777665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.06  E-value=3.2e-06  Score=63.93  Aligned_cols=83  Identities=17%  Similarity=0.081  Sum_probs=48.0

Q ss_pred             cccEEEccCCcccc----ccchhhhCCCCCCEEecCCcccccc----CCccccCCCCCCEEeCCCCcCCcc-------Cc
Q 040815          116 ILAGIILSNNRFVG----AIPASIANLKGLQVLNLQYNNLQGL----IPSSLGNLTNLESLDLSNKKFAGR-------IP  180 (305)
Q Consensus       116 ~L~~L~ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~-------~p  180 (305)
                      .|+.|++++|.+..    .+...+...+.|++|+|++|.++..    +-.++...++|++|++++|.+...       +.
T Consensus        45 ~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~  124 (167)
T d1pgva_          45 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM  124 (167)
T ss_dssp             CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred             ccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHH
Confidence            35555555555542    2233444556777777777777643    222455567778888877755421       33


Q ss_pred             cccccCCCCCEEeccCCc
Q 040815          181 QQLVELTFLEFFNVSDNY  198 (305)
Q Consensus       181 ~~~~~l~~L~~L~l~~N~  198 (305)
                      ..+...+.|+.|+++.+.
T Consensus       125 ~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         125 MAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHCSSCCEEECCCCC
T ss_pred             HHHHhCCCccEeeCcCCC
Confidence            344556777888776654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.86  E-value=5.8e-06  Score=62.47  Aligned_cols=118  Identities=10%  Similarity=0.114  Sum_probs=73.0

Q ss_pred             cCCCCCcEEeCCCc-ccCCC----cChhccCCCCCCEEEccCccCCcccCCCC--CCCCCCCccEEEccCCcCcccCChh
Q 040815           19 INCSKLEFLGLGNY-QISDT----FPSWLGTLPKLNVLILRSNIFYGVIEEPR--TGCGFSKLRIIDLSNNRFSGNLPSK   91 (305)
Q Consensus        19 ~~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~l~~L~~L~L~~n~l~g~~p~~   91 (305)
                      .+.++|+.|+|+++ .++..    +-..+...++|++|+|++|.+.......+  .+...+.|+.|+|++|.+...--..
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45688999999874 46432    23355677889999999998864322221  1234578999999999887211111


Q ss_pred             hhhccchhhhhhhccccccCcccccccEEEccCCccccc-------cchhhhCCCCCCEEecCCccc
Q 040815           92 SFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGA-------IPASIANLKGLQVLNLQYNNL  151 (305)
Q Consensus        92 ~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~-------~p~~~~~l~~L~~L~Ls~N~l  151 (305)
                      .+.   .|            ...+.|++|++++|.+...       +...+...++|+.|+++.+..
T Consensus        92 l~~---aL------------~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          92 LLR---ST------------LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHH---HT------------TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHH---HH------------HhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            111   11            1145688899988865521       334455567788888876643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.42  E-value=5e-05  Score=56.96  Aligned_cols=63  Identities=22%  Similarity=0.208  Sum_probs=31.1

Q ss_pred             hCCCCCCEEecCCcccccc----CCccccCCCCCCEEeC--CCCcCCc----cCccccccCCCCCEEeccCCc
Q 040815          136 ANLKGLQVLNLQYNNLQGL----IPSSLGNLTNLESLDL--SNKKFAG----RIPQQLVELTFLEFFNVSDNY  198 (305)
Q Consensus       136 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L--~~N~l~~----~~p~~~~~l~~L~~L~l~~N~  198 (305)
                      ...+.++.+++++|.+...    +...+...++|+.++|  ++|.+..    .+...+...+.|+.|+++.+.
T Consensus        71 ~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          71 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             hhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            3445556666666555422    1233445556655433  3444543    233344456666666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.26  E-value=1.5e-05  Score=59.90  Aligned_cols=41  Identities=20%  Similarity=0.165  Sum_probs=20.5

Q ss_pred             hhhCCCCCCEEec--CCccccc----cCCccccCCCCCCEEeCCCCc
Q 040815          134 SIANLKGLQVLNL--QYNNLQG----LIPSSLGNLTNLESLDLSNKK  174 (305)
Q Consensus       134 ~~~~l~~L~~L~L--s~N~l~~----~~p~~~~~l~~L~~L~L~~N~  174 (305)
                      .+...++|+.++|  ++|.+..    .+...+...++|+.|+++.+.
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            3444555665444  3444432    122334456667777766554