Citrus Sinensis ID: 040833

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500---
Protein Sequence
FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTCSIKESKQSRSRSLKLIIPVVTGI
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEccccccEEccccccccccccccccccccEEEEcccHHHHcccccccEEEcccccccccccccccccccccEEccccEEEEcccHHHHcccccccEEEcccccccccccHHHHHHHccccccccccccEEEcccccccccccEEEccccccccccccccccHHHccccccccEEEcccccccccccHHHHccccccccEEccccEEEEcccccccccccccEEEccccEEEEcccccccccccccEEEccccEEEEcccHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHccccccccEEcccccccccccHHHHcccccccEEcccccccccccHHHHccccccEEccccccccccccHHHHccccccEEccccccccccccccccccccccEEEccccccEEccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEccHHHHHcccccEEEcccccccccccccccccccEEEEEccccccccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEEccccccccccHcHccccccEEEEcEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccHcHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccccccccccEEEEcccccccccccHHHccccHHHHHEEcccccccccccHcccc
Coil and Loop (DISEMBL)
fnelvgkvpgklgslSKLRILAMHRNnlsgeipssfgnlssLEALSASANQFVGQIPETLSQLKRMLYLLLGvnklsgeipfSIYNlsslnyicvpvnqlqgslpsdlgftlpnlevlnlcrnqftgpipasisNASNLMRLVIAKngfsgkvpslkilHKLEWVGisrnhlgngkkddLEFVNSLVNASRLELLQIsdnnfggmlpeaVGNLSTRLRILIVGnnqlfgnipsglrNLVNLEflhlggnqftgripgsIVDLYKLQRLALEGnkfwgeipssignLTLLITLNFEenmlegsipsslgkcqNLISLnlsnnnlsgtipteVIGLSSLSIYLDlsqnqlngplpsnfgilknlgaidisenklsgqipssigsctRLEQLVMngnffqgnipsslsslrgienldlsrnnlsgripkylenfpflqnlnlsfnhfegevpikgvfsnssaisidgndnlcggiselhlstcsikeskqsRSRSLKLIIPVVTGI
Flexible Loop (DISEMBL)
fnelvgkvpgklgsLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTCSikeskqsrsrslkliipvvtgi
Low Complexity Region (SEG)
FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNlsslealsasaNQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQnlislnlsnnnlsGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTCSIKESKQSRSRSLKLIIPVVTGI
Disordered region (IsUnstruct)
*****************LRILAM*************************ANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTCS*************LIIP*****
Disordered Region (DISOPRED)
FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISE********************LIIPVVTGI
Disordered Region (DISEMBL)
FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTCS**********SLKLIIPVVTGI
Disordered Region (DISPRO)
FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTCSIKESKQSRSRSLKLIIPVVTG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTCSIKESKQSRSRSLKLIIPVVTGI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	503	2.2.26 [Sep-21-2011]
C0LGT6	1031	LRR receptor-like serine/	yes	no	0.992	0.483	0.447	1e-103
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.994	0.495	0.427	1e-103
Q9SD62	1025	Putative receptor-like pr	no	no	0.986	0.483	0.469	1e-95
Q9FL28	1173	LRR receptor-like serine/	no	no	0.972	0.416	0.367	6e-75
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.934	0.479	0.373	2e-71
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.980	0.471	0.316	2e-66
O82318	960	Probably inactive leucine	no	no	0.916	0.480	0.337	7e-66
O49318	1124	Probable leucine-rich rep	no	no	0.952	0.426	0.360	2e-65
C0LGV1	1135	LRR receptor-like serine/	no	no	0.827	0.366	0.360	5e-63
Q9LHP4	1141	Receptor-like protein kin	no	no	0.876	0.386	0.370	2e-62

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  376 bits (966), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 225/503 (44%), Positives = 312/503 (62%), Gaps = 4/503 (0%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLS 61
           N L   VP +LGSLSKL IL + +NNL+G  P+S GNL+SL+ L  + NQ  G+IP+ ++
Sbjct: 155 NHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVA 214

Query: 62  QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
           +L +M++  + +N  SG  P ++YN+SSL  + +  N   G+L +D G+ LPNL  L L 
Sbjct: 215 RLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLG 274

Query: 122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKVP-SLKILHKLEWVGISRNHLGNGKKDDL 180
            NQFTG IP +++N S+L R  I+ N  SG +P S   L  L W+GI  N LGN     L
Sbjct: 275 TNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGL 334

Query: 181 EFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN 240
           EF+ ++ N ++LE L +  N  GG LP ++ NLST L  L +G N + G IP  + NLV+
Sbjct: 335 EFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVS 394

Query: 241 LEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLE 300
           L+ L L  N  +G +P S   L  LQ + L  N   GEIPS  GN+T L  L+   N   
Sbjct: 395 LQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFH 454

Query: 301 GSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILK 360
           G IP SLG+C+ L+ L +  N L+GTIP E++ + SL+ Y+DLS N L G  P   G L+
Sbjct: 455 GRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLA-YIDLSNNFLTGHFPEEVGKLE 513

Query: 361 NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL 420
            L  +  S NKLSG++P +IG C  +E L M GN F G IP  +S L  ++N+D S NNL
Sbjct: 514 LLVGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIP-DISRLVSLKNVDFSNNNL 572

Query: 421 SGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTC 480
           SGRIP+YL + P L+NLNLS N FEG VP  GVF N++A+S+ GN N+CGG+ E+ L  C
Sbjct: 573 SGRIPRYLASLPSLRNLNLSMNKFEGRVPTTGVFRNATAVSVFGNTNICGGVREMQLKPC 632

Query: 481 SIKESKQSRSRSLKLIIPVVTGI 503
            ++ S + R + L +   VV+GI
Sbjct: 633 IVQASPRKR-KPLSVRKKVVSGI 654

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/505 (42%), Positives = 315/505 (62%), Gaps = 5/505 (0%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLS 61
           N L G VP +LGSL+ L  L ++ NN+ G++P+S GNL+ LE L+ S N   G+IP  ++
Sbjct: 148 NRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVA 207

Query: 62  QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
           QL ++  L L  N  SG  P ++YNLSSL  + +  N   G L  DLG  LPNL   N+ 
Sbjct: 208 QLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMG 267

Query: 122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLE 181
            N FTG IP ++SN S L RL + +N  +G +P+   +  L+ + +  N LG+    DLE
Sbjct: 268 GNYFTGSIPTTLSNISTLERLGMNENNLTGSIPTFGNVPNLKLLFLHTNSLGSDSSRDLE 327

Query: 182 FVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNL 241
           F+ SL N ++LE L I  N  GG LP ++ NLS +L  L +G   + G+IP  + NL+NL
Sbjct: 328 FLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINL 387

Query: 242 EFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEG 301
           + L L  N  +G +P S+  L  L+ L+L  N+  G IP+ IGN+T+L TL+   N  EG
Sbjct: 388 QKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEG 447

Query: 302 SIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKN 361
            +P+SLG C +L+ L + +N L+GTIP E++ +  L + LD+S N L G LP + G L+N
Sbjct: 448 IVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQL-LRLDMSGNSLIGSLPQDIGALQN 506

Query: 362 LGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS 421
           LG + + +NKLSG++P ++G+C  +E L + GN F G+IP  L  L G++ +DLS N+LS
Sbjct: 507 LGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIP-DLKGLVGVKEVDLSNNDLS 565

Query: 422 GRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTCS 481
           G IP+Y  +F  L+ LNLSFN+ EG+VP+KG+F N++ +SI GN++LCGGI    L  C 
Sbjct: 566 GSIPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCGGIMGFQLKPCL 625

Query: 482 IKES---KQSRSRSLKLIIPVVTGI 503
            +     K+  SR  K++I V  GI
Sbjct: 626 SQAPSVVKKHSSRLKKVVIGVSVGI 650

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  350 bits (899), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 235/501 (46%), Positives = 328/501 (65%), Gaps = 5/501 (0%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLS 61
           N L   VP + GSLSKL +L++ RNNL+G+ P+S GNL+SL+ L    NQ  G+IP  ++
Sbjct: 163 NHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIA 222

Query: 62  QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
           +LK+M++  + +NK +G  P  IYNLSSL ++ +  N   G+L  D G  LPNL++L + 
Sbjct: 223 RLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQILYMG 282

Query: 122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKVP-SLKILHKLEWVGISRNHLGNGKKDDL 180
            N FTG IP ++SN S+L +L I  N  +GK+P S   L  L  +G++ N LGN    DL
Sbjct: 283 INSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSSGDL 342

Query: 181 EFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN 240
           +F+ +L N S+L+ L +  N  GG LP  + NLST+L  L +G N + G+IP G+ NLV+
Sbjct: 343 DFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVS 402

Query: 241 LEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLE 300
           L+ L LG N  TG++P S+ +L +L+++ L  N   GEIPSS+GN++ L  L    N  E
Sbjct: 403 LQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFE 462

Query: 301 GSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILK 360
           GSIPSSLG C  L+ LNL  N L+G+IP E++ L SL + L++S N L GPL  + G LK
Sbjct: 463 GSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSL-VVLNVSFNLLVGPLRQDIGKLK 521

Query: 361 NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL 420
            L A+D+S NKLSGQIP ++ +C  LE L++ GN F G IP  +  L G+  LDLS+NNL
Sbjct: 522 FLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIP-DIRGLTGLRFLDLSKNNL 580

Query: 421 SGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTC 480
           SG IP+Y+ NF  LQNLNLS N+F+G VP +GVF N+SA+S+ GN NLCGGI  L L  C
Sbjct: 581 SGTIPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLCGGIPSLQLQPC 640

Query: 481 SIKESKQSRSRSLKLIIPVVT 501
           S++  +  R  S++ II +  
Sbjct: 641 SVELPR--RHSSVRKIITICV 659

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  281 bits (720), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 202/549 (36%), Positives = 287/549 (52%), Gaps = 60/549 (10%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLS 61
           N+L GK+P +LG+L +L+ L +++N L+  IPSS   L+ L  L  S N  VG I E + 
Sbjct: 274 NQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIG 333

Query: 62  QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
            L+ +  L L  N  +GE P SI NL +L  + V  N + G LP+DLG  L NL  L+  
Sbjct: 334 FLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGL-LTNLRNLSAH 392

Query: 122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLE 181
            N  TGPIP+SISN + L  L ++ N  +G++P       L ++ I RNH      DD  
Sbjct: 393 DNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDD-- 450

Query: 182 FVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNL 241
               + N S LE L ++DNN  G L   +G L  +LRIL V  N L G IP  + NL +L
Sbjct: 451 ----IFNCSNLETLSVADNNLTGTLKPLIGKLQ-KLRILQVSYNSLTGPIPREIGNLKDL 505

Query: 242 EFLHLGGNQFTGRIPGSIVDLYKLQRLA-----LEG-------------------NKFWG 277
             L+L  N FTGRIP  + +L  LQ L      LEG                   NKF G
Sbjct: 506 NILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSG 565

Query: 278 EIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIG-LSS 336
           +IP+    L  L  L+ + N   GSIP+SL     L + ++S+N L+GTIP E++  L +
Sbjct: 566 QIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKN 625

Query: 337 LSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQL------- 389
           + +YL+ S N L G +P   G L+ +  ID+S N  SG IP S+ +C  +  L       
Sbjct: 626 MQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNL 685

Query: 390 -------VMNG-----------NFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENF 431
                  V  G           N F G IP S  ++  + +LDLS NNL+G IP+ L N 
Sbjct: 686 SGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANL 745

Query: 432 PFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTCSIKESKQSRSR 491
             L++L L+ N+ +G VP  GVF N +A  + GN +LCG  S+  L  C+IK+     S+
Sbjct: 746 STLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCG--SKKPLKPCTIKQKSSHFSK 803

Query: 492 SLKLIIPVV 500
             ++I+ ++
Sbjct: 804 RTRVILIIL 812

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score =  270 bits (691), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 188/503 (37%), Positives = 282/503 (56%), Gaps = 33/503 (6%)

Query: 3   ELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNL-SSLEALSASANQFVGQIPETLS 61
           +L G++   + +L+ L +L + RN   G+IP   G+L  +L+ LS S N   G IP+ L 
Sbjct: 77  DLGGEISPSIANLTGLTVLDLSRNFFVGKIPPEIGSLHETLKQLSLSENLLHGNIPQELG 136

Query: 62  QLKRMLYLLLGVNKLSGEIPFSIY---NLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVL 118
            L R++YL LG N+L+G IP  ++   + SSL YI +  N L G +P +    L  L  L
Sbjct: 137 LLNRLVYLDLGSNRLNGSIPVQLFCNGSSSSLQYIDLSNNSLTGEIPLNYHCHLKELRFL 196

Query: 119 NLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKI--LHKLEWVGISRNH-LGNG 175
            L  N+ TG +P+S+SN++NL  + +  N  SG++PS  I  + +L+++ +S NH + + 
Sbjct: 197 LLWSNKLTGTVPSSLSNSTNLKWMDLESNMLSGELPSQVISKMPQLQFLYLSYNHFVSHN 256

Query: 176 KKDDLE-FVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIP-- 232
              +LE F  SL N+S L+ L+++ N+ GG +  +V +LS  L  + +  N++ G+IP  
Sbjct: 257 NNTNLEPFFASLANSSDLQELELAGNSLGGEITSSVRHLSVNLVQIHLDQNRIHGSIPPE 316

Query: 233 ----------------------SGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLAL 270
                                   L  L  LE ++L  N  TG IP  + D+ +L  L +
Sbjct: 317 ISNLLNLTLLNLSSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIPMELGDIPRLGLLDV 376

Query: 271 EGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTE 330
             N   G IP S GNL+ L  L    N L G++P SLGKC NL  L+LS+NNL+GTIP E
Sbjct: 377 SRNNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVE 436

Query: 331 VIG-LSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQL 389
           V+  L +L +YL+LS N L+GP+P     +  + ++D+S N+LSG+IP  +GSC  LE L
Sbjct: 437 VVSNLRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPPQLGSCIALEHL 496

Query: 390 VMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449
            ++ N F   +PSSL  L  ++ LD+S N L+G IP   +    L++LN SFN   G V 
Sbjct: 497 NLSRNGFSSTLPSSLGQLPYLKELDVSFNRLTGAIPPSFQQSSTLKHLNFSFNLLSGNVS 556

Query: 450 IKGVFSNSSAISIDGNDNLCGGI 472
            KG FS  +  S  G+  LCG I
Sbjct: 557 DKGSFSKLTIESFLGDSLLCGSI 579

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  253 bits (646), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 183/579 (31%), Positives = 285/579 (49%), Gaps = 86/579 (14%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLS 61
           N+LVG++P +LG LS L  L +  N L+G IPS  G L+ +  ++   N   G IP +  
Sbjct: 152 NQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFG 211

Query: 62  QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
            L +++ L L +N LSG IP  I NL +L  +C+  N L G +PS  G  L N+ +LN+ 
Sbjct: 212 NLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFG-NLKNVTLLNMF 270

Query: 122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHLGNGKKDDL 180
            NQ +G IP  I N + L  L +  N  +G +PS L  +  L  + +  N L      +L
Sbjct: 271 ENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPEL 330

Query: 181 EFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN 240
             + S+++      L+IS+N   G +P++ G L T L  L + +NQL G IP G+ N   
Sbjct: 331 GEMESMID------LEISENKLTGPVPDSFGKL-TALEWLFLRDNQLSGPIPPGIANSTE 383

Query: 241 LEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLE 300
           L  L L  N FTG +P +I    KL+ L L+ N F G +P S+ +   LI + F+ N   
Sbjct: 384 LTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFS 443

Query: 301 GSIPSSLG------------------------KCQNLISLNLSNNNLSGTIPTEVIGLSS 336
           G I  + G                        + Q L++  LSNN+++G IP E+  ++ 
Sbjct: 444 GDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQ 503

Query: 337 LSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFF 396
           LS  LDLS N++ G LP +   +  +  + ++ N+LSG+IPS I   T LE L ++ N F
Sbjct: 504 LS-QLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRF 562

Query: 397 QGNIPSSLS------------------------------------------------SLR 408
              IP +L+                                                SL+
Sbjct: 563 SSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQ 622

Query: 409 GIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNL 468
            +E LDLS NNLSG+IP   ++   L ++++S N+ +G +P    F N+   + +GN +L
Sbjct: 623 NLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDL 682

Query: 469 CGGISELH-LSTCSIKESKQS---RSRSLKLIIPVVTGI 503
           CG ++    L  CSI  SK+S   R+  + +++P++  I
Sbjct: 683 CGSVNTTQGLKPCSITSSKKSHKDRNLIIYILVPIIGAI 721

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  251 bits (642), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 173/512 (33%), Positives = 259/512 (50%), Gaps = 51/512 (9%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLS 61
           N   G++   +G  S LR+L +  N L+G +P   GNLS LE L+ ++NQ  G +P  L 
Sbjct: 155 NMFTGEIYNDIGVFSNLRVLDLGGNVLTGHVPGYLGNLSRLEFLTLASNQLTGGVPVELG 214

Query: 62  QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
           ++K + ++ LG N LSGEIP+ I  LSSLN++ +  N L G +P  LG  L  LE + L 
Sbjct: 215 KMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGPIPPSLG-DLKKLEYMFLY 273

Query: 122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLE 181
           +N+ +G IP SI +  NL+ L  + N  SG++P L                         
Sbjct: 274 QNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPEL------------------------- 308

Query: 182 FVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNL 241
               +     LE+L +  NN  G +PE V +L  RL++L + +N+  G IP+ L    NL
Sbjct: 309 ----VAQMQSLEILHLFSNNLTGKIPEGVTSLP-RLKVLQLWSNRFSGGIPANLGKHNNL 363

Query: 242 EFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEG 301
             L L  N  TG++P ++ D   L +L L  N    +IP S+G    L  +  + N   G
Sbjct: 364 TVLDLSTNNLTGKLPDTLCDSGHLTKLILFSNSLDSQIPPSLGMCQSLERVRLQNNGFSG 423

Query: 302 SIPSSLGKCQNLISLNLSNNNLSGTIPT------EVIGLSSLSIY--------------L 341
            +P    K Q +  L+LSNNNL G I T      E++ LS    +              L
Sbjct: 424 KLPRGFTKLQLVNFLDLSNNNLQGNINTWDMPQLEMLDLSVNKFFGELPDFSRSKRLKKL 483

Query: 342 DLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIP 401
           DLS+N+++G +P        +  +D+SEN+++G IP  + SC  L  L ++ N F G IP
Sbjct: 484 DLSRNKISGVVPQGLMTFPEIMDLDLSENEITGVIPRELSSCKNLVNLDLSHNNFTGEIP 543

Query: 402 SSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAIS 461
           SS +  + + +LDLS N LSG IPK L N   L  +N+S N   G +P  G F   +A +
Sbjct: 544 SSFAEFQVLSDLDLSCNQLSGEIPKNLGNIESLVQVNISHNLLHGSLPFTGAFLAINATA 603

Query: 462 IDGNDNLCGGISELHLSTCSIKESKQSRSRSL 493
           ++GN +LC   S   L  C +   + ++S  L
Sbjct: 604 VEGNIDLCSENSASGLRPCKVVRKRSTKSWWL 635

Arabidopsis thaliana (taxid: 3702)

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  250 bits (638), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 179/496 (36%), Positives = 261/496 (52%), Gaps = 17/496 (3%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLS 61
           N+  G +P  +G+L+ L  LA++ N+L G IPS  GN+ SL+ L    NQ  G IP+ L 
Sbjct: 263 NKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELG 322

Query: 62  QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
           +L +++ +    N LSGEIP  +  +S L  + +  N+L G +P++L   L NL  L+L 
Sbjct: 323 KLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELS-KLRNLAKLDLS 381

Query: 122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWV-GISRNHLGNGKKDDL 180
            N  TGPIP    N +++ +L +  N  SG +P    L+   WV   S N L +GK    
Sbjct: 382 INSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQL-SGKIPPF 440

Query: 181 EFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN 240
                +   S L LL +  N   G +P  V    + L++ +VGN +L G  P+ L  LVN
Sbjct: 441 -----ICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGN-RLTGQFPTELCKLVN 494

Query: 241 LEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLE 300
           L  + L  N+F+G +P  I    KLQRL L  N+F   +P+ I  L+ L+T N   N L 
Sbjct: 495 LSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLT 554

Query: 301 GSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILK 360
           G IPS +  C+ L  L+LS N+  G++P E+  L  L I L LS+N+ +G +P   G L 
Sbjct: 555 GPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEI-LRLSENRFSGNIPFTIGNLT 613

Query: 361 NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF--FQGNIPSSLSSLRGIENLDLSRN 418
           +L  + +  N  SG IP  +G  + L Q+ MN ++  F G IP  + +L  +  L L+ N
Sbjct: 614 HLTELQMGGNLFSGSIPPQLGLLSSL-QIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNN 672

Query: 419 NLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLS 478
           +LSG IP   EN   L   N S+N+  G++P   +F N +  S  GN  LCGG    HL 
Sbjct: 673 HLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGG----HLR 728

Query: 479 TCSIKESKQSRSRSLK 494
           +C    S      SLK
Sbjct: 729 SCDPSHSSWPHISSLK 744

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  242 bits (617), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 162/449 (36%), Positives = 235/449 (52%), Gaps = 33/449 (7%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLS 61
           +EL GK+P ++G+   L++L +    +SG +P S G LS L++LS  +    G+IP+ L 
Sbjct: 213 SELSGKIPEEIGNCRNLKVLGLAATKISGSLPVSLGQLSKLQSLSVYSTMLSGEIPKELG 272

Query: 62  QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
               ++ L L  N LSG +P  +  L +L  + +  N L G +P ++GF + +L  ++L 
Sbjct: 273 NCSELINLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPEEIGF-MKSLNAIDLS 331

Query: 122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLE 181
            N F+G IP S  N SNL  L+++ N  +G +PS+                         
Sbjct: 332 MNYFSGTIPKSFGNLSNLQELMLSSNNITGSIPSI------------------------- 366

Query: 182 FVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNL 241
               L N ++L   QI  N   G++P  +G L   L I +   N+L GNIP  L    NL
Sbjct: 367 ----LSNCTKLVQFQIDANQISGLIPPEIG-LLKELNIFLGWQNKLEGNIPDELAGCQNL 421

Query: 242 EFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEG 301
           + L L  N  TG +P  +  L  L +L L  N   G IP  IGN T L+ L    N + G
Sbjct: 422 QALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNNRITG 481

Query: 302 SIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKN 361
            IP  +G  QNL  L+LS NNLSG +P E+     L + L+LS N L G LP +   L  
Sbjct: 482 EIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQM-LNLSNNTLQGYLPLSLSSLTK 540

Query: 362 LGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS 421
           L  +D+S N L+G+IP S+G    L +L+++ N F G IPSSL     ++ LDLS NN+S
Sbjct: 541 LQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNNIS 600

Query: 422 GRIPKYLENFPFLQ-NLNLSFNHFEGEVP 449
           G IP+ L +   L   LNLS+N  +G +P
Sbjct: 601 GTIPEELFDIQDLDIALNLSWNSLDGFIP 629

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  239 bits (611), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 168/453 (37%), Positives = 243/453 (53%), Gaps = 12/453 (2%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNN-LSGEIPSSFGNLSSLEALSASANQFVGQIPETL 60
           N L G +P +LG LS L ++ +  N  +SG+IPS  G+ S+L  L  +     G +P +L
Sbjct: 187 NLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSL 246

Query: 61  SQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNL 120
            +LK++  L +    +SGEIP  + N S L  + +  N L GS+P ++G  L  LE L L
Sbjct: 247 GKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIG-QLTKLEQLFL 305

Query: 121 CRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHLGNGKKDD 179
            +N   G IP  I N SNL  + ++ N  SG +PS +  L  LE   IS N         
Sbjct: 306 WQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGS---- 361

Query: 180 LEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLV 239
                ++ N S L  LQ+  N   G++P  +G L T+L +    +NQL G+IP GL +  
Sbjct: 362 --IPTTISNCSSLVQLQLDKNQISGLIPSELGTL-TKLTLFFAWSNQLEGSIPPGLADCT 418

Query: 240 NLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENML 299
           +L+ L L  N  TG IP  +  L  L +L L  N   G IP  IGN + L+ L    N +
Sbjct: 419 DLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRI 478

Query: 300 EGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGIL 359
            G IPS +G  + +  L+ S+N L G +P E+   S L + +DLS N L G LP+    L
Sbjct: 479 TGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQM-IDLSNNSLEGSLPNPVSSL 537

Query: 360 KNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNN 419
             L  +D+S N+ SG+IP+S+G    L +L+++ N F G+IP+SL    G++ LDL  N 
Sbjct: 538 SGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNE 597

Query: 420 LSGRIPKYLENFPFLQ-NLNLSFNHFEGEVPIK 451
           LSG IP  L +   L+  LNLS N   G++P K
Sbjct: 598 LSGEIPSELGDIENLEIALNLSSNRLTGKIPSK 630

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	503
255577438	1028	receptor-kinase, putative [Ricinus commu	0.986	0.482	0.543	1e-138
449499190	1023	PREDICTED: LOW QUALITY PROTEIN: probable	0.998	0.490	0.538	1e-135
449441592	1023	PREDICTED: probable LRR receptor-like se	0.998	0.490	0.538	1e-135
255581223	1015	receptor-kinase, putative [Ricinus commu	0.996	0.493	0.510	1e-135
224121306	966	predicted protein [Populus trichocarpa]	0.968	0.504	0.555	1e-135
224127492	1022	predicted protein [Populus trichocarpa]	0.994	0.489	0.543	1e-133
359486510	965	PREDICTED: probable LRR receptor-like se	0.998	0.520	0.559	1e-133
224113117	1006	predicted protein [Populus trichocarpa]	0.998	0.499	0.524	1e-132
224097750	1023	predicted protein [Populus trichocarpa]	0.998	0.490	0.526	1e-132
224116466	1008	predicted protein [Populus trichocarpa]	0.996	0.497	0.503	1e-130

>gi|255577438|ref|XP_002529598.1| receptor-kinase, putative [Ricinus communis] gi|223530931|gb|EEF32790.1| receptor-kinase, putative [Ricinus communis]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 270/497 (54%), Positives = 351/497 (70%), Gaps = 1/497 (0%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLS 61
           N L GK+P +L SLSKL++     N L+GEI  SF NLSSLE +  + N F G+IP ++ 
Sbjct: 158 NNLTGKLPAELKSLSKLQMFEFEINYLTGEISPSFSNLSSLEIIYGTRNNFHGEIPNSIG 217

Query: 62  QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
           QLK +    LG +  SG IP SI+NLSSL  + VP+NQL G+LP DLG +LP LEVL L 
Sbjct: 218 QLKSLQTFSLGGSNFSGVIPPSIFNLSSLTILSVPINQLHGNLPPDLGQSLPKLEVLRLY 277

Query: 122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLE 181
            N+F+G IP +ISNASNL+ L +++N F+GKVPSL  LH L ++GI +N+LGNG+ DDL 
Sbjct: 278 ANKFSGSIPPTISNASNLVALDVSQNNFTGKVPSLARLHNLSYIGIHKNNLGNGEDDDLS 337

Query: 182 FVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNL 241
           F+ +L N + LE+L I++NN GG+LPE + N ST+L  +  G N++ G IPS + NL+ L
Sbjct: 338 FLYTLANNTNLEILAITENNLGGVLPEMLSNFSTKLVHMAFGRNKIRGRIPSEIDNLIRL 397

Query: 242 EFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEG 301
           E L    N+ TG IP S+  L  L +L L  N   G IPSS+GN+T L T++ + N LEG
Sbjct: 398 EALGFERNELTGSIPSSLGKLKNLIKLYLNDNNISGSIPSSLGNITSLSTISLKVNNLEG 457

Query: 302 SIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKN 361
           SIPSSLG CQ ++ ++LS NNLSGTIP E+I + SLSI LDLS+NQ  G LP   G L N
Sbjct: 458 SIPSSLGNCQQMLLMDLSRNNLSGTIPKELISIPSLSISLDLSENQFTGSLPMEVGGLVN 517

Query: 362 LGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS 421
           LG +D+S+NKLSG+IP S+GSCTRLE L + GN FQG IP SLSSLRGI +L+LS NNL+
Sbjct: 518 LGYLDVSKNKLSGEIPKSLGSCTRLETLYLQGNAFQGTIPVSLSSLRGINDLNLSHNNLT 577

Query: 422 GRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTCS 481
           G+IP +   F  L+ L+LS+N FEGEVP +GVF N+SA SI GN NLCGGI E++L  C+
Sbjct: 578 GQIPNFFAEFKSLEKLDLSYNDFEGEVPAEGVFKNASAFSISGNKNLCGGIPEINLPRCT 637

Query: 482 IKES-KQSRSRSLKLII 497
           + +S K   S  L+LII
Sbjct: 638 LNKSMKPKTSHKLRLII 654

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499190|ref|XP_004160745.1| PREDICTED: LOW QUALITY PROTEIN: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 271/503 (53%), Positives = 338/503 (67%), Gaps = 1/503 (0%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLS 61
           N L G +P +LG L+KL +     N L GEIP +FGNLSSL     + N F G IP +  
Sbjct: 162 NNLTGVLPMELGLLTKLEVFQCSSNELFGEIPETFGNLSSLRGFWGTLNNFHGNIPSSFG 221

Query: 62  QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
           QL+ +  L++G NKLSG IP SIYN+SS+    +PVNQL+G LP++LGF  PNL++L + 
Sbjct: 222 QLRNLTALVIGANKLSGTIPSSIYNISSMRIFSLPVNQLEGGLPTNLGFIFPNLQILKIH 281

Query: 122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLE 181
            NQF+GPIP ++SNAS L   VI+ N FSGKVPSL     LE  GI RN+LG G  DDL 
Sbjct: 282 TNQFSGPIPFTLSNASKLEEFVISNNMFSGKVPSLASTRHLEVFGIDRNNLGYGNVDDLN 341

Query: 182 FVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNL 241
           F+  LVN + L  + ISDNNFGG LPE + N ST+LRI+  G NQ+ G IP+ + NL  L
Sbjct: 342 FLFPLVNCTNLSSVVISDNNFGGALPEYISNFSTKLRIIGFGRNQIHGTIPTEIGNLFQL 401

Query: 242 EFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEG 301
           E L L  NQ TG IP S   LYKL  L L  NK  G IP S+GNL+ L   N   N L G
Sbjct: 402 EALGLETNQLTGSIPSSFGKLYKLNDLFLNMNKLSGTIPKSLGNLSALGRCNLRLNNLTG 461

Query: 302 SIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKN 361
           +IP SLG+ Q+L+ L LS N LSG IP E++ +SSLSI LDLS+N L G +P   G L N
Sbjct: 462 AIPPSLGESQSLLMLALSQNQLSGAIPKELLSISSLSIALDLSENYLTGSIPLEVGKLVN 521

Query: 362 LGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS 421
           LG + IS+N L+G IPS++ +CT LE L ++GNF +G IP SLSSLRGIE LDLSRNNLS
Sbjct: 522 LGYLHISDNMLTGVIPSTLSACTSLEDLYLDGNFLEGPIPESLSSLRGIEELDLSRNNLS 581

Query: 422 GRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTCS 481
           G+IP YL+ F  L  LNLSFN+ EGEVP +GVF N++A SI GN  LC GI+EL+L  C 
Sbjct: 582 GKIPTYLQEFEVLSYLNLSFNNLEGEVPTQGVFKNTTAFSILGNKKLCNGINELNLPRCR 641

Query: 482 IK-ESKQSRSRSLKLIIPVVTGI 503
           +    KQ  +  LK+II VV+G+
Sbjct: 642 LDYPRKQKLTTKLKIIISVVSGL 664

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441592|ref|XP_004138566.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 271/503 (53%), Positives = 338/503 (67%), Gaps = 1/503 (0%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLS 61
           N L G +P +LG L+KL +     N L GEIP +FGNLSSL     + N F G IP +  
Sbjct: 162 NNLTGVLPMELGLLTKLEVFQCSSNELFGEIPETFGNLSSLRGFWGTLNNFHGNIPSSFG 221

Query: 62  QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
           QL+ +  L++G NKLSG IP SIYN+SS+    +PVNQL+G LP++LGF  PNL++L + 
Sbjct: 222 QLRNLTALVIGANKLSGTIPSSIYNISSMRIFSLPVNQLEGGLPTNLGFIFPNLQILKIH 281

Query: 122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLE 181
            NQF+GPIP ++SNAS L   VI+ N FSGKVPSL     LE  GI RN+LG G  DDL 
Sbjct: 282 TNQFSGPIPFTLSNASKLEEFVISNNMFSGKVPSLASTRHLEVFGIDRNNLGYGNVDDLN 341

Query: 182 FVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNL 241
           F+  LVN + L  + ISDNNFGG LPE + N ST+LRI+  G NQ+ G IP+ + NL  L
Sbjct: 342 FLFPLVNCTNLSSVVISDNNFGGALPEYISNFSTKLRIIGFGRNQIHGTIPTEIGNLFQL 401

Query: 242 EFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEG 301
           E L L  NQ TG IP S   LYKL  L L  NK  G IP S+GNL+ L   N   N L G
Sbjct: 402 EALGLETNQLTGSIPSSFGKLYKLNDLFLNMNKLSGTIPKSLGNLSALGRCNLRLNNLTG 461

Query: 302 SIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKN 361
           +IP SLG+ Q+L+ L LS N LSG IP E++ +SSLSI LDLS+N L G +P   G L N
Sbjct: 462 AIPPSLGESQSLLMLALSQNQLSGAIPKELLSISSLSIALDLSENYLTGSIPLEVGKLVN 521

Query: 362 LGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS 421
           LG + IS+N L+G IPS++ +CT LE L ++GNF +G IP SLSSLRGIE LDLSRNNLS
Sbjct: 522 LGYLHISDNMLTGVIPSTLSACTSLEDLYLDGNFLEGPIPESLSSLRGIEELDLSRNNLS 581

Query: 422 GRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTCS 481
           G+IP YL+ F  L  LNLSFN+ EGEVP +GVF N++A SI GN  LC GI+EL+L  C 
Sbjct: 582 GKIPTYLQEFEVLSYLNLSFNNLEGEVPTQGVFKNTTAFSILGNKKLCNGINELNLPRCR 641

Query: 482 IK-ESKQSRSRSLKLIIPVVTGI 503
           +    KQ  +  LK+II VV+G+
Sbjct: 642 LDYPRKQKLTTKLKIIISVVSGL 664

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581223|ref|XP_002531424.1| receptor-kinase, putative [Ricinus communis] gi|223528974|gb|EEF30966.1| receptor-kinase, putative [Ricinus communis]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 257/503 (51%), Positives = 359/503 (71%), Gaps = 2/503 (0%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETL 60
           +N+L G++P +L  L+KL+++++ +N  SG IP S GNLSSL+ LSA  N   G IP+ +
Sbjct: 156 YNQLEGEIPEELSLLAKLQVISIQKNYFSGSIPPSIGNLSSLQVLSAPENYLSGNIPDAI 215

Query: 61  SQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNL 120
            QL  ++++ L VN LSG IP SIYNLSS+N + +  NQ+QG LPS+LG TLPNL+V  +
Sbjct: 216 GQLNNLIFISLSVNNLSGTIPPSIYNLSSINTLNIVYNQIQGRLPSNLGITLPNLQVFAI 275

Query: 121 CRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDL 180
            RN F G IP+S SNASNL+ L++++N  +G+VPSL+ LH L+ +G+  N+LG  + +DL
Sbjct: 276 ARNDFIGSIPSSFSNASNLVWLIMSENKLTGRVPSLEQLHNLQILGLGYNYLG-LEANDL 334

Query: 181 EFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN 240
           +FV+SLVN + L  L+I +N F G+LPE++ N ST    L++  N + G IPS + NLVN
Sbjct: 335 DFVSSLVNCTNLWRLEIHNNKFHGVLPESISNFSTTFSQLVIAENNIAGRIPSSISNLVN 394

Query: 241 LEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLE 300
           LE L +  NQ +G IP +  +L  L+ L L GNK  G IPSS+GNLT+L+TL+F +N L+
Sbjct: 395 LERLEMANNQLSGNIPSNFGNLNMLKVLHLFGNKLSGTIPSSLGNLTMLLTLSFYDNNLQ 454

Query: 301 GSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILK 360
           G IPSSL +C+NL+ L+L+ NNLSG+IP +V GLSSLSI LDLS N   G +P   G LK
Sbjct: 455 GRIPSSLAECENLMVLDLAKNNLSGSIPLQVFGLSSLSIALDLSANHFTGVIPMEVGNLK 514

Query: 361 NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL 420
           +L  + IS+N LSG+IP S+GSC +LE L + GNFF G +PSSLSSLRG+  LD S NNL
Sbjct: 515 DLEQLGISDNMLSGRIPDSLGSCIKLEVLALQGNFFDGLVPSSLSSLRGLRVLDFSSNNL 574

Query: 421 SGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTC 480
           SG IP++L++F  L++LNLS+N+FEG VP++G+F N+S   + GND LCGGI E HL+ C
Sbjct: 575 SGEIPEFLQSFDLLESLNLSYNNFEGRVPVEGIFRNASTTLVMGNDKLCGGIPEFHLAKC 634

Query: 481 SIKESKQSRSRSLKLIIPVVTGI 503
           + K  K+  +  LK++I  +  +
Sbjct: 635 NAKSPKK-LTLLLKIVISTICSL 656

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121306|ref|XP_002330794.1| predicted protein [Populus trichocarpa] gi|222872596|gb|EEF09727.1| predicted protein [Populus trichocarpa]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 271/488 (55%), Positives = 350/488 (71%), Gaps = 1/488 (0%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLS 61
           N L+G++P +  SL  L++L +  N+L+G IPS FGN SSL+ LS + N F G +P+TL 
Sbjct: 118 NNLIGRIPLEFSSLLNLQLLNVEFNDLTGGIPSFFGNYSSLQVLSTTFNNFGGTLPDTLG 177

Query: 62  QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
           QLK + Y+ +G N L+G IP S+YNLS L+  C P NQLQG+LPSDLG   P L  LN+ 
Sbjct: 178 QLKNLYYISMGANFLTGTIPSSLYNLSFLSIFCFPQNQLQGTLPSDLGNEFPYLVELNVG 237

Query: 122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLE 181
            NQ TG IP S+SN+S L RL IA NGF+G VPSL+ +HKL W+ IS NHLG G+  DL+
Sbjct: 238 DNQITGSIPISLSNSSYLERLTIAINGFTGNVPSLEKMHKLWWLSISTNHLGTGEARDLD 297

Query: 182 FVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNL 241
           F++++ NA+ L+L+ I+ NNFGGMLP A+ N  T L I+ + +N++FG+IP+GL NLVNL
Sbjct: 298 FLSTVSNATSLQLMAINVNNFGGMLPSAITNF-TSLSIMTLDSNRIFGSIPAGLGNLVNL 356

Query: 242 EFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEG 301
           E L++G NQFTG IP  I  L +L++L L+GNK  G IPSS GNLTLL  L   ++ L+G
Sbjct: 357 EMLYMGKNQFTGDIPEEIGKLQQLKKLGLQGNKLSGNIPSSFGNLTLLTHLYMYQSSLKG 416

Query: 302 SIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKN 361
           SIP  LGKC NL+ LNLS NNL+G IP EV+ + SL+IY+DLS+N L G LP+  G L N
Sbjct: 417 SIPPELGKCLNLLLLNLSQNNLTGAIPKEVLSIPSLTIYMDLSRNNLIGSLPTEVGTLTN 476

Query: 362 LGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS 421
           LG +DIS N LSG+IP ++GSC RLE L M  NFFQG IPSS  SLRG++ L+LS NNL+
Sbjct: 477 LGILDISHNMLSGEIPGTLGSCVRLESLFMQNNFFQGTIPSSFISLRGLQVLNLSHNNLT 536

Query: 422 GRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTCS 481
           G IP +  +F  L  LNLSFN+FEG VP  GVF NSSA+S+ GN  LCGGI+E  L  C+
Sbjct: 537 GSIPDFFLDFRALATLNLSFNNFEGLVPTDGVFRNSSAVSVVGNSKLCGGIAEFQLLECN 596

Query: 482 IKESKQSR 489
            K +K+ R
Sbjct: 597 FKGTKKGR 604

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127492|ref|XP_002329291.1| predicted protein [Populus trichocarpa] gi|222870745|gb|EEF07876.1| predicted protein [Populus trichocarpa]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 273/502 (54%), Positives = 340/502 (67%), Gaps = 2/502 (0%)

Query: 4   LVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQL 63
           L GK+P +LG LSKL++L +  NN  GEIP SFGNLS++ A+  S N   G IP    QL
Sbjct: 160 LTGKLPAELGLLSKLQVLTIELNNFVGEIPYSFGNLSAINAIYGSINNLEGSIPNVFGQL 219

Query: 64  KRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRN 123
           KR+  L LG N LSG IP SI+NLSSL  +  PVNQL GSLP  LG TLPNL+V N+  N
Sbjct: 220 KRLKILSLGANNLSGMIPPSIFNLSSLTLLSFPVNQLYGSLPHTLGLTLPNLQVFNIHTN 279

Query: 124 QFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFV 183
           QF G IPA+ SNASNL+   I  N F+GKVP L   H L+ +G+  N+LG G+ +DL FV
Sbjct: 280 QFGGLIPATFSNASNLLSFQIGSNNFNGKVPPLSSSHDLQVLGVGDNNLGKGENNDLNFV 339

Query: 184 NSLVN-ASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLE 242
             L N  + LE L  SDNNFGG+LPE V N ST+L  +    NQ+ G+IP+ + NL+NLE
Sbjct: 340 YPLANNMTSLEALDTSDNNFGGVLPEIVSNFSTKLMKMTFARNQIRGSIPTQIGNLINLE 399

Query: 243 FLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGS 302
            L L  NQ TG IP S+  L KL  L L GNK  G IPSS+GN+T L  +N   N LEGS
Sbjct: 400 ALGLETNQLTGMIPSSMGKLQKLSDLFLNGNKISGMIPSSMGNMTSLGRVNMRLNNLEGS 459

Query: 303 IPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNL 362
           IP SLG  Q L+SL LS NNLSG IP E++ + SLS+YL LS+N+L G LP     L NL
Sbjct: 460 IPPSLGNWQKLLSLALSQNNLSGPIPKELVSIPSLSMYLVLSENELTGSLPIEMEKLVNL 519

Query: 363 GAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSG 422
           G +D+S+N+ SG+IP S+GSC  LE L +  NF QG IP +LSSLR I+ L+LS NNL+G
Sbjct: 520 GYLDVSKNRFSGEIPKSLGSCVSLESLHLEENFLQGPIPITLSSLRAIQELNLSYNNLTG 579

Query: 423 RIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTCSI 482
           +IP++LE+F  L++LNLSFN FEGEVP++G F N+SAISI GN  LCGGI +L+L+ C  
Sbjct: 580 QIPEFLEDFKLLESLNLSFNDFEGEVPVQGAFQNTSAISIFGNKKLCGGIPQLNLTRCPS 639

Query: 483 KESKQSRSRS-LKLIIPVVTGI 503
            E   S+S + L  II  V G 
Sbjct: 640 SEPTNSKSPTKLIWIIGSVCGF 661

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486510|ref|XP_002271317.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like, partial [Vitis vinifera]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 282/504 (55%), Positives = 360/504 (71%), Gaps = 2/504 (0%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETL 60
           +N LVGK+P +LGSLSKL+ L +H N+LSG IP SFGNLSSLE LSA+ N  VG IP +L
Sbjct: 90  WNRLVGKIPAELGSLSKLQYLFIHANSLSGGIPRSFGNLSSLERLSATQNNIVGTIPASL 149

Query: 61  SQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNL 120
            QL  + ++ L  N LSG IP S+ NLSSL +  V  N L G+LPS+LG TLPNL+ L+L
Sbjct: 150 FQLITLTHVALNANGLSGTIPPSLSNLSSLIFFAVSFNHLHGNLPSNLGITLPNLQDLSL 209

Query: 121 CRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDL 180
             N+FTG IP S+SNASNL       N  +GKVPSL+ L +L +  ++ N+LGNG+ +DL
Sbjct: 210 SGNRFTGSIPVSLSNASNLEYFSCNGNNLTGKVPSLEKLQRLHFFSVTSNNLGNGEIEDL 269

Query: 181 EFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN 240
            F++SL N S LE+L ++ NNFGG+LPE++GN ST+L  L++  N++ G+IP+G+ NLV+
Sbjct: 270 GFLSSLTNVSNLEVLALNVNNFGGVLPESIGNWSTKLATLLLDGNKIGGSIPAGIGNLVS 329

Query: 241 LEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLE 300
           LE L +  NQ +G IP  I  L  L+ L L  NK  G +PSS+GNL  LI L    N  +
Sbjct: 330 LERLEMWENQLSGSIPVDIGKLQNLRVLMLIKNKLSGILPSSLGNLENLIQLVLGRNYFQ 389

Query: 301 GSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILK 360
           G IPSSLGKCQNL+ L+LS NNLSGTIP +V+ LSSLSI LD+S N+L G LP   G LK
Sbjct: 390 GKIPSSLGKCQNLLFLDLSLNNLSGTIPPQVVSLSSLSISLDISDNRLTGALPIEVGNLK 449

Query: 361 NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL 420
           NLG +D+S N LSG IPSS+GSCT LE L M GNFFQG+IPSS SSLRGI  LDLS NNL
Sbjct: 450 NLGVLDVSNNMLSGGIPSSVGSCTSLEYLSMKGNFFQGSIPSSFSSLRGIRILDLSHNNL 509

Query: 421 SGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTC 480
           SG+IP++L++  F Q +NLS+N FEG +P +GVF N SA SI GN  LCGGI E  L  C
Sbjct: 510 SGKIPEFLQDIHF-QLVNLSYNDFEGILPTEGVFKNVSATSIMGNSKLCGGIPEFQLPKC 568

Query: 481 SIKE-SKQSRSRSLKLIIPVVTGI 503
           +++E  K+  S +LK+II  V+G+
Sbjct: 569 NLQEPKKRGLSLALKIIIATVSGL 592

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113117|ref|XP_002316396.1| predicted protein [Populus trichocarpa] gi|222865436|gb|EEF02567.1| predicted protein [Populus trichocarpa]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 264/503 (52%), Positives = 340/503 (67%), Gaps = 1/503 (0%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLS 61
           N L+GK+P +LGSL  L+   +  N+L GEIP SF NLSS+E +    N   G IP  + 
Sbjct: 139 NNLIGKIPAELGSLLNLQACLLVTNHLVGEIPLSFENLSSVEIIGVGDNHLQGSIPYGIG 198

Query: 62  QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
           +LKR+  L + +N LSG IP SIYNLSSL    V +NQ  GSLPSDLG  LP+LEVL   
Sbjct: 199 KLKRLRKLSVPLNNLSGTIPPSIYNLSSLTLFSVAINQFHGSLPSDLGQKLPSLEVLVFY 258

Query: 122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLE 181
            N+F GPIP +ISNAS L  +    N F+GKVP    L  L+++GI  N LGNG++ DL 
Sbjct: 259 ANRFNGPIPVTISNASTLSVIDFGNNSFTGKVPPFANLPNLQYLGIDSNELGNGEEGDLS 318

Query: 182 FVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNL 241
           F+ SL N + LE L +SDNN GGM PE + N S++   L +G NQ+ G+IP  + NL++L
Sbjct: 319 FLQSLANYTNLEELGMSDNNLGGMFPEIISNFSSQFTTLSMGRNQVRGSIPVDIGNLISL 378

Query: 242 EFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEG 301
           + L L  NQ TG IP SI  L  L  L L  NK  G IPSS+GN+T L+ L    N L+G
Sbjct: 379 DTLMLETNQLTGVIPTSIGKLKNLHGLTLVENKISGNIPSSLGNVTSLVELYLSANNLQG 438

Query: 302 SIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKN 361
            IPSSL  CQNL+SL L+ NNLSG +  +VIG++SLS+ LDLS NQL GPLPS  G L N
Sbjct: 439 GIPSSLANCQNLMSLKLAQNNLSGPLTKQVIGMASLSVSLDLSHNQLIGPLPSEVGRLVN 498

Query: 362 LGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS 421
           LG +D+S N+LSG+IP S+GSC  LE L + GNF QG+IP  LSSLR ++ L+LS NNL+
Sbjct: 499 LGYLDVSHNRLSGEIPGSLGSCIMLEYLHLEGNFLQGSIPELLSSLRALQYLNLSYNNLT 558

Query: 422 GRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTCS 481
           G+IP++L +F  LQ L+LSFNH EGE+P + VF N SA+S+ GND LCGGIS+L+LS C+
Sbjct: 559 GQIPRFLADFQLLQRLDLSFNHLEGEMPTQRVFGNVSAVSVLGNDKLCGGISQLNLSRCT 618

Query: 482 IKESKQSR-SRSLKLIIPVVTGI 503
             E ++ + S  LKL+I +  G 
Sbjct: 619 SNELRKPKFSTKLKLVISIPCGF 641

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097750|ref|XP_002311066.1| predicted protein [Populus trichocarpa] gi|222850886|gb|EEE88433.1| predicted protein [Populus trichocarpa]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 265/503 (52%), Positives = 348/503 (69%), Gaps = 1/503 (0%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLS 61
           N L GK+P + GSLSKL++L   RN+L GEIP S+GNLS L+ +    N   G IP+++ 
Sbjct: 156 NNLTGKLPAEFGSLSKLQVLNFQRNHLFGEIPPSYGNLSELQIIRGVRNNLQGGIPDSIG 215

Query: 62  QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
           QLKR+     GVN LSG IP SIYN+SSL     P+NQL G LP +LG TLPNL+  N+ 
Sbjct: 216 QLKRLADFTFGVNSLSGTIPSSIYNMSSLVRFSAPLNQLYGILPPELGLTLPNLDTFNIL 275

Query: 122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLE 181
            NQF G IP+++SNAS +  L +  N F+GKVPSL  LH L+ + ++ N+LGN + DDL 
Sbjct: 276 SNQFRGLIPSTLSNASKISDLQLRNNSFTGKVPSLAGLHNLQRLVLNFNNLGNNEDDDLG 335

Query: 182 FVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNL 241
           F+  L N + LE+L I+ NNFGG+LPE V N ST+LRI+I+G N L G+IP+ +  L+ L
Sbjct: 336 FLYPLANTTSLEILAINHNNFGGVLPEIVCNFSTKLRIMIIGENNLRGSIPTEIGKLIGL 395

Query: 242 EFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEG 301
           + L L  NQ TG IP SI  L +L    + GNK  G IPSS+GN+T L+ + F  N L+G
Sbjct: 396 DTLGLELNQLTGIIPSSIGKLQRLGVFNINGNKISGNIPSSLGNITSLLEVYFFANNLQG 455

Query: 302 SIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKN 361
            IPSSLG CQNL+ L L  NNLSG+IP EV+G+SSLS+YLDL++NQL GPLPS  G L +
Sbjct: 456 RIPSSLGNCQNLLMLRLDQNNLSGSIPKEVLGISSLSMYLDLAENQLIGPLPSEVGKLVH 515

Query: 362 LGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS 421
           LG +++ +N+LSG+IP  + SC  LE L +  NFFQG+IP SLSSLR ++ L+LS NNLS
Sbjct: 516 LGGLNVYKNRLSGEIPGILSSCVSLEHLNLGPNFFQGSIPESLSSLRALQILNLSHNNLS 575

Query: 422 GRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTC- 480
           G+IPK+L  F  L +L+LSFN+ EGEVP++GVF+ +S  S+ GN  LCGG  +L+LS C 
Sbjct: 576 GKIPKFLAEFKLLTSLDLSFNNLEGEVPVQGVFARASGFSMLGNKKLCGGRPQLNLSRCT 635

Query: 481 SIKESKQSRSRSLKLIIPVVTGI 503
           S K  K   S  +KLII +  G 
Sbjct: 636 SKKSRKLKSSTKMKLIIAIPCGF 658

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116466|ref|XP_002331904.1| predicted protein [Populus trichocarpa] gi|222874576|gb|EEF11707.1| predicted protein [Populus trichocarpa]

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/502 (50%), Positives = 344/502 (68%), Gaps = 1/502 (0%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLS 61
           N L G +P  LGSLSKL++ +  +NNL G+IP SF NLSS+  +  + N   G IP ++ 
Sbjct: 151 NNLTGNLPAGLGSLSKLQVFSFRKNNLDGKIPLSFENLSSIIEIDGTLNNIQGGIPSSIG 210

Query: 62  QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
           +LK + +  LG N LSG IP S+YN+SSL +  +P NQ  G+LP ++G TLPNL+ L + 
Sbjct: 211 KLKTLNFFSLGSNNLSGTIPASLYNISSLIHFSLPYNQFHGTLPPNIGLTLPNLQYLGIH 270

Query: 122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLE 181
            N+ +G +PA++ NA+    + ++ N F+GKVP+L I+  L  + +  N LG G+ DDL 
Sbjct: 271 DNRLSGQLPATLINATKFTEIYLSYNKFTGKVPTLAIMPNLRILSMEENGLGKGEDDDLS 330

Query: 182 FVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNL 241
           F+ +L N+S+LE L I +NNFGG+LP+ + N ST+L+ +  G+NQ+ G IP G+ NLV+L
Sbjct: 331 FLYTLSNSSKLEDLYIDNNNFGGVLPDIISNFSTKLKQMAFGSNQIRGTIPDGIGNLVSL 390

Query: 242 EFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEG 301
           + L L  N  TG IP SI  L  L    L  NK  G IPSS+GN+T L+ +NF++N L+G
Sbjct: 391 DTLGLEANHLTGSIPSSIGKLQNLADFFLNENKLSGSIPSSLGNITSLMQINFDQNNLQG 450

Query: 302 SIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKN 361
           SIP SLG CQNL+ L LS NNLSG IP EV+ +SSLS+YL LS+NQL G LP   G L  
Sbjct: 451 SIPPSLGNCQNLLVLALSQNNLSGPIPKEVLSISSLSMYLVLSENQLTGSLPFEVGKLVT 510

Query: 362 LGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS 421
           LG +DIS+N+LSG+IP+S+GSC  LE L ++GNF QG I  SL SLR +++L+LS NNLS
Sbjct: 511 LGYMDISKNRLSGEIPASLGSCESLEHLYLDGNFLQGPISESLRSLRALQDLNLSHNNLS 570

Query: 422 GRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTCS 481
           G+IPK+L +   LQ+L+LSFN  EGEVP+ GVF N+SA+SI GN NLCGGI +L+L TC 
Sbjct: 571 GQIPKFLGDLK-LQSLDLSFNDLEGEVPMHGVFENTSAVSIAGNKNLCGGILQLNLPTCR 629

Query: 482 IKESKQSRSRSLKLIIPVVTGI 503
            K +K   S  L L + +  G 
Sbjct: 630 SKSTKPKSSTKLTLTVAIPCGF 651

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	503
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.982	0.481	0.450	1.7e-105
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.992	0.483	0.431	2.3e-103
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.992	0.613	0.416	3.8e-101
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.994	0.495	0.413	3.5e-98
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.994	0.494	0.411	1.2e-95
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.952	0.467	0.422	2.1e-91
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.992	0.494	0.391	9.3e-91
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.964	0.413	0.360	1.7e-70
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.952	0.426	0.344	1.8e-66
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.914	0.403	0.350	2.3e-64

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
 Identities = 225/499 (45%), Positives = 314/499 (62%)

Query:     2 NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNXXXXXXXXXXXNQFVGQIPETLS 61
             N L   VP + GSLSKL +L++ RNNL+G+ P+S GN           NQ  G+IP  ++
Sbjct:   163 NHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIA 222

Query:    62 QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
             +LK+M++  + +NK +G  P  IYNLSSL ++ +  N   G+L  D G  LPNL++L + 
Sbjct:   223 RLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQILYMG 282

Query:   122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKVP-SLKILHKLEWVGISRNHLGNGKKDDL 180
              N FTG IP ++SN S+L +L I  N  +GK+P S   L  L  +G++ N LGN    DL
Sbjct:   283 INSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSSGDL 342

Query:   181 EFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN 240
             +F+ +L N S+L+ L +  N  GG LP  + NLST+L  L +G N + G+IP G+ NLV+
Sbjct:   343 DFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVS 402

Query:   241 LEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLE 300
             L+ L LG N  TG++P S+ +L +L+++ L  N   GEIPSS+GN++ L  L    N  E
Sbjct:   403 LQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFE 462

Query:   301 GSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILK 360
             GSIPSSLG C              G+IP E++ L SL + L++S N L GPL  + G LK
Sbjct:   463 GSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSL-VVLNVSFNLLVGPLRQDIGKLK 521

Query:   361 NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL 420
              L A+D+S NKLSGQIP ++ +C  LE L++ GN F G IP  +  L G+  LDLS+NNL
Sbjct:   522 FLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPD-IRGLTGLRFLDLSKNNL 580

Query:   421 SGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTC 480
             SG IP+Y+ NF  LQNLNLS N+F+G VP +GVF N+SA+S+ GN NLCGGI  L L  C
Sbjct:   581 SGTIPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLCGGIPSLQLQPC 640

Query:   481 SIKESKQSRSRSLKLIIPV 499
             S++  +  R  S++ II +
Sbjct:   641 SVELPR--RHSSVRKIITI 657

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 1024 (365.5 bits), Expect = 2.3e-103, P = 2.3e-103
 Identities = 217/503 (43%), Positives = 298/503 (59%)

Query:     2 NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNXXXXXXXXXXXNQFVGQIPETLS 61
             N L   VP +LGSLSKL IL + +NNL+G  P+S GN           NQ  G+IP+ ++
Sbjct:   155 NHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVA 214

Query:    62 QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
             +L +M++  + +N  SG  P ++YN+SSL  + +  N   G+L +D G+ LPNL  L L 
Sbjct:   215 RLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLG 274

Query:   122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKVP-SLKILHKLEWVGISRNHLGNGKKDDL 180
              NQFTG IP +++N S+L R  I+ N  SG +P S   L  L W+GI  N LGN     L
Sbjct:   275 TNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGL 334

Query:   181 EFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN 240
             EF+ ++ N ++LE L +  N  GG LP ++ NLST L  L +G N + G IP  + NLV+
Sbjct:   335 EFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVS 394

Query:   241 LEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLE 300
             L+ L L  N  +G +P S   L  LQ + L  N   GEIPS  GN+T L  L+   N   
Sbjct:   395 LQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFH 454

Query:   301 GSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILK 360
             G IP SLG+C+             GTIP E++ + SL+ Y+DLS N L G  P   G L+
Sbjct:   455 GRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLA-YIDLSNNFLTGHFPEEVGKLE 513

Query:   361 NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL 420
              L  +  S NKLSG++P +IG C  +E L M GN F G IP  +S L  ++N+D S NNL
Sbjct:   514 LLVGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIPD-ISRLVSLKNVDFSNNNL 572

Query:   421 SGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTC 480
             SGRIP+YL + P L+NLNLS N FEG VP  GVF N++A+S+ GN N+CGG+ E+ L  C
Sbjct:   573 SGRIPRYLASLPSLRNLNLSMNKFEGRVPTTGVFRNATAVSVFGNTNICGGVREMQLKPC 632

Query:   481 SIKESKQSRSRSLKLIIPVVTGI 503
              ++ S + R + L +   VV+GI
Sbjct:   633 IVQASPRKR-KPLSVRKKVVSGI 654

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 1003 (358.1 bits), Expect = 3.8e-101, P = 3.8e-101
 Identities = 208/500 (41%), Positives = 296/500 (59%)

Query:     1 FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNXXXXXXXXXXXNQFVGQIPETL 60
             FN L G++P  LG+L+ L +L +  N LSG IPSS G            N   G IP + 
Sbjct:   135 FNSLSGEIPAALGNLTSLSVLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSF 194

Query:    61 SQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNL 120
              QL+R+ +L L  N LSG IP  I+N+SSL    V  N+L G+LP++    LP+L+ + +
Sbjct:   195 GQLRRLSFLSLAFNNLSGAIPDPIWNISSLTIFEVISNKLSGTLPTNAFSNLPSLQEVYM 254

Query:   121 CRNQFTGPIPASISNASNLMRLVIAKNGFSGKVP-SLKILHKLEWVGISRNHLGNGKKDD 179
               NQF G IPASI NASN+    I  N FSG VP  +  +  L+ + +        + +D
Sbjct:   255 YYNQFHGRIPASIGNASNISIFTIGLNSFSGVVPPEIGRMRNLQRLELPETLSEAEETND 314

Query:   180 LEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLV 239
              +F+ +L N S L+ +++    FGG+LP++V NLS+ L  L + +N++ G++P  + NLV
Sbjct:   315 WKFMTALTNCSNLQEVELGGCKFGGVLPDSVSNLSSSLVSLSIRDNKISGSLPRDIGNLV 374

Query:   240 NLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENML 299
             NL++L L  N  TG +P S   L  L+RL ++ NK  G +P +IGNLT L  +  + N  
Sbjct:   375 NLQYLSLANNSLTGSLPSSFSKLKNLRRLTVDNNKLIGSLPLTIGNLTQLTNMEVQFNAF 434

Query:   300 EGSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGIL 359
              G+IPS+LG                G IP E+  + +LS  LD+S N L G +P   G L
Sbjct:   435 GGTIPSTLGNLTKLFQINLGHNNFIGQIPIEIFSIPALSEILDVSHNNLEGSIPKEIGKL 494

Query:   360 KNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNN 419
             KN+       NKLSG+ PS+IG C  L+ L +  NF  G+IP +L+ L+G++ LDLS NN
Sbjct:   495 KNIVEFHADSNKLSGENPSTIGECQLLQHLFLQNNFLNGSIPIALTQLKGLDTLDLSGNN 554

Query:   420 LSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLST 479
             LSG+IP  L + P L +LNLSFN F GEVP  GVF+N+S I I GN ++CGGI ELHL T
Sbjct:   555 LSGQIPMSLGDMPLLHSLNLSFNSFHGEVPTNGVFANASEIYIQGNAHICGGIPELHLPT 614

Query:   480 CSIKESKQSRSRSLKLIIPV 499
             CS+K  K+ + + L L++ +
Sbjct:   615 CSLKSRKKKKHQILLLVVVI 634

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
 Identities = 209/505 (41%), Positives = 300/505 (59%)

Query:     2 NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNXXXXXXXXXXXNQFVGQIPETLS 61
             N L G VP +LGSL+ L  L ++ NN+ G++P+S GN           N   G+IP  ++
Sbjct:   148 NRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVA 207

Query:    62 QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
             QL ++  L L  N  SG  P ++YNLSSL  + +  N   G L  DLG  LPNL   N+ 
Sbjct:   208 QLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMG 267

Query:   122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLE 181
              N FTG IP ++SN S L RL + +N  +G +P+   +  L+ + +  N LG+    DLE
Sbjct:   268 GNYFTGSIPTTLSNISTLERLGMNENNLTGSIPTFGNVPNLKLLFLHTNSLGSDSSRDLE 327

Query:   182 FVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNL 241
             F+ SL N ++LE L I  N  GG LP ++ NLS +L  L +G   + G+IP  + NL+NL
Sbjct:   328 FLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINL 387

Query:   242 EFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEG 301
             + L L  N  +G +P S+  L  L+ L+L  N+  G IP+ IGN+T+L TL+   N  EG
Sbjct:   388 QKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEG 447

Query:   302 SIPSSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKN 361
              +P+SLG C              GTIP E++ +  L + LD+S N L G LP + G L+N
Sbjct:   448 IVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQL-LRLDMSGNSLIGSLPQDIGALQN 506

Query:   362 LGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS 421
             LG + + +NKLSG++P ++G+C  +E L + GN F G+IP  L  L G++ +DLS N+LS
Sbjct:   507 LGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPD-LKGLVGVKEVDLSNNDLS 565

Query:   422 GRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTC- 480
             G IP+Y  +F  L+ LNLSFN+ EG+VP+KG+F N++ +SI GN++LCGGI    L  C 
Sbjct:   566 GSIPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCGGIMGFQLKPCL 625

Query:   481 SIKES--KQSRSRSLKLIIPVVTGI 503
             S   S  K+  SR  K++I V  GI
Sbjct:   626 SQAPSVVKKHSSRLKKVVIGVSVGI 650

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
 Identities = 208/506 (41%), Positives = 294/506 (58%)

Query:     2 NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNXXXXXXXXXXXNQFVGQIPETLS 61
             N L   VP +LGSL+KL IL + RNNL G++P S GN           N   G++P+ L+
Sbjct:   148 NPLRQGVPSELGSLTKLVILDLGRNNLKGKLPRSLGNLTSLKSLGFTDNNIEGEVPDELA 207

Query:    62 QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
             +L +M+ L L +NK  G  P +IYNLS+L  + +  +   GSL  D G  LPN+  LNL 
Sbjct:   208 RLSQMVGLGLSMNKFFGVFPPAIYNLSALEDLFLFGSGFSGSLKPDFGNLLPNIRELNLG 267

Query:   122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKV-PSLKILHKLEWVGISRNHLGNGKKDDL 180
              N   G IP ++SN S L +  I KN  +G + P+   +  L+++ +S N LG+    DL
Sbjct:   268 ENDLVGAIPTTLSNISTLQKFGINKNMMTGGIYPNFGKVPSLQYLDLSENPLGSYTFGDL 327

Query:   181 EFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN 240
             EF++SL N + L+LL +     GG LP ++ N+ST L  L +  N  FG+IP  + NL+ 
Sbjct:   328 EFIDSLTNCTHLQLLSVGYTRLGGALPTSIANMSTELISLNLIGNHFFGSIPQDIGNLIG 387

Query:   241 LEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLE 300
             L+ L LG N  TG +P S+  L +L  L+L  N+  GEIPS IGNLT L  L    N  E
Sbjct:   388 LQRLQLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNLTQLEILYLSNNSFE 447

Query:   301 GSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILK 360
             G +P SLGKC              GTIP E++ + +L + L +  N L+G LP++ G L+
Sbjct:   448 GIVPPSLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTL-VNLSMEGNSLSGSLPNDIGSLQ 506

Query:   361 NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL 420
             NL  + +  NK SG +P ++G+C  +EQL + GN F G IP+ +  L G+  +DLS N+L
Sbjct:   507 NLVKLSLENNKFSGHLPQTLGNCLAMEQLFLQGNSFDGAIPN-IRGLMGVRRVDLSNNDL 565

Query:   421 SGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTC 480
             SG IP+Y  NF  L+ LNLS N+F G+VP KG F NS+ + + GN NLCGGI +L L  C
Sbjct:   566 SGSIPEYFANFSKLEYLNLSINNFTGKVPSKGNFQNSTIVFVFGNKNLCGGIKDLKLKPC 625

Query:   481 SIKES--KQSRSRSLKLIIPVVT-GI 503
               +E   +   S  LK +  +V+ GI
Sbjct:   626 LAQEPPVETKHSSHLKKVAILVSIGI 651

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
 Identities = 203/481 (42%), Positives = 278/481 (57%)

Query:     2 NELVGKVPGKLG-SLSKLRILAMHRNNLSGEIPSSFGNXXXXXXXXXXXNQFVGQIPETL 60
             N+L G +P ++G SL  L  L +++N LSGEIPS+ GN           N+  G IP +L
Sbjct:   161 NQLRGMIPREIGASLKHLSNLYLYKNGLSGEIPSALGNLTSLQEFDLSFNRLSGAIPSSL 220

Query:    61 SQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNL 120
              QL  +L + LG N LSG IP SI+NLSSL    V  N+L G +P++   TL  LEV+++
Sbjct:   221 GQLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMIPTNAFKTLHLLEVIDM 280

Query:   121 CRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHLGNGKKDD 179
               N+F G IPAS++NAS+L  + I  N FSG + S    L  L  + + RN     ++DD
Sbjct:   281 GTNRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLTELYLWRNLFQTREQDD 340

Query:   180 LEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLV 239
               F++ L N S+L+ L + +NN GG+LP +  NLST L  L +  N++ G+IP  + NL+
Sbjct:   341 WGFISDLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSLSFLALELNKITGSIPKDIGNLI 400

Query:   240 NLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENML 299
              L+ L+L  N F G +P S+  L  L  L    N   G IP +IGNLT L  L    N  
Sbjct:   401 GLQHLYLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIGNLTELNILLLGTNKF 460

Query:   300 EGSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGIL 359
              G IP +L                 G IP+E+  + +LSI +++S+N L G +P   G L
Sbjct:   461 SGWIPYTLSNLTNLLSLGLSTNNLSGPIPSELFNIQTLSIMINVSKNNLEGSIPQEIGHL 520

Query:   360 KNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNN 419
             KNL       N+LSG+IP+++G C  L  L +  N   G+IPS+L  L+G+E LDLS NN
Sbjct:   521 KNLVEFHAESNRLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPSALGQLKGLETLDLSSNN 580

Query:   420 LSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLST 479
             LSG+IP  L +   L +LNLSFN F GEVP  G F+ +S ISI GN  LCGGI +LHL  
Sbjct:   581 LSGQIPTSLADITMLHSLNLSFNSFVGEVPTIGAFAAASGISIQGNAKLCGGIPDLHLPR 640

Query:   480 C 480
             C
Sbjct:   641 C 641

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
 Identities = 197/503 (39%), Positives = 284/503 (56%)

Query:     2 NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNXXXXXXXXXXXNQFVGQIPETLS 61
             N L   VP +LGSL KL  L +  N+L G+ P    N           N   G+IP+ ++
Sbjct:   148 NNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRNLTSLIVLNLGYNHLEGEIPDDIA 207

Query:    62 QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
              L +M+ L L +N  SG  P + YNLSSL  + +  N   G+L  D G  LPN+  L+L 
Sbjct:   208 MLSQMVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGNGFSGNLKPDFGNLLPNIHELSLH 267

Query:   122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKV-PSLKILHKLEWVGISRNHLGNGKKDDL 180
              N  TG IP +++N S L    I KN  +G + P+   L  L ++ ++ N LG+    DL
Sbjct:   268 GNFLTGAIPTTLANISTLEMFGIGKNRMTGSISPNFGKLENLHYLELANNSLGSYSFGDL 327

Query:   181 EFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN 240
              F+++L N S L  L +S N  GG LP ++ N+ST L +L +  N ++G+IP  + NL+ 
Sbjct:   328 AFLDALTNCSHLHGLSVSYNRLGGALPTSIVNMSTELTVLNLKGNLIYGSIPHDIGNLIG 387

Query:   241 LEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLE 300
             L+ L L  N  TG +P S+ +L  L  L L  N+F GEIPS IGNLT L+ L    N  E
Sbjct:   388 LQSLLLADNLLTGPLPTSLGNLVGLGELILFSNRFSGEIPSFIGNLTQLVKLYLSNNSFE 447

Query:   301 GSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILK 360
             G +P SLG C              GTIP E++ + +L ++L++  N L+G LP++ G L+
Sbjct:   448 GIVPPSLGDCSHMLDLQIGYNKLNGTIPKEIMQIPTL-VHLNMESNSLSGSLPNDIGRLQ 506

Query:   361 NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL 420
             NL  + +  N LSG +P ++G C  +E + +  N F G IP  +  L G++N+DLS NNL
Sbjct:   507 NLVELLLGNNNLSGHLPQTLGKCLSMEVIYLQENHFDGTIPD-IKGLMGVKNVDLSNNNL 565

Query:   421 SGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTC 480
             SG I +Y ENF  L+ LNLS N+FEG VP +G+F N++ +S+ GN NLCG I EL L  C
Sbjct:   566 SGSISEYFENFSKLEYLNLSDNNFEGRVPTEGIFQNATLVSVFGNKNLCGSIKELKLKPC 625

Query:   481 SIKESKQSRSRSLKLIIPVVTGI 503
              I ++    +R   L+  V  G+
Sbjct:   626 -IAQAPPVETRHPSLLKKVAIGV 647

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 721 (258.9 bits), Expect = 1.7e-70, P = 1.7e-70
 Identities = 181/502 (36%), Positives = 264/502 (52%)

Query:     2 NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNXXXXXXXXXXXNQFVGQIPETLS 61
             N+L GK+P +LG+L +L+ L +++N L+  IPSS              N  VG I E + 
Sbjct:   274 NQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIG 333

Query:    62 QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
              L+ +  L L  N  +GE P SI NL +L  + V  N + G LP+DLG  L NL  L+  
Sbjct:   334 FLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGL-LTNLRNLSAH 392

Query:   122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLE 181
              N  TGPIP+SISN + L  L ++ N  +G++P       L ++ I RNH      DD+ 
Sbjct:   393 DNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDI- 451

Query:   182 FVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNL 241
             F     N S LE L ++DNN  G L   +G L  +LRIL V  N L G IP  + NL +L
Sbjct:   452 F-----NCSNLETLSVADNNLTGTLKPLIGKLQ-KLRILQVSYNSLTGPIPREIGNLKDL 505

Query:   242 EFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEG 301
               L+L  N FTGRIP  + +L  LQ L +  N   G IP  + ++ LL  L+   N   G
Sbjct:   506 NILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSG 565

Query:   302 SIPSSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNF-GILK 360
              IP+   K +             G+IP  +  LS L+ + D+S N L G +P      LK
Sbjct:   566 QIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTF-DISDNLLTGTIPGELLASLK 624

Query:   361 NLGA-IDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNN 419
             N+   ++ S N L+G IP  +G    ++++ ++ N F G+IP SL + + +  LD S+NN
Sbjct:   625 NMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNN 684

Query:   420 LSGRIP-KYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSS-AISID-GNDNLCGGISELH 476
             LSG IP +  +    + +LNLS N F GE+P    F N +  +S+D  ++NL G I E  
Sbjct:   685 LSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQS--FGNMTHLVSLDLSSNNLTGEIPESL 742

Query:   477 LSTCSIKESKQSRSRSLKLIIP 498
              +  ++K  K + S +LK  +P
Sbjct:   743 ANLSTLKHLKLA-SNNLKGHVP 763

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 1.8e-66, P = 1.8e-66
 Identities = 171/496 (34%), Positives = 249/496 (50%)

Query:     2 NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNXXXXXXXXXXXNQFVGQIPETLS 61
             N+  G +P  +G+L+ L  LA++ N+L G IPS  GN           NQ  G IP+ L 
Sbjct:   263 NKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELG 322

Query:    62 QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
             +L +++ +    N LSGEIP  +  +S L  + +  N+L G +P++L   L NL  L+L 
Sbjct:   323 KLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELS-KLRNLAKLDLS 381

Query:   122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWV-GISRNHLGNGKKDDL 180
              N  TGPIP    N +++ +L +  N  SG +P    L+   WV   S N L +GK    
Sbjct:   382 INSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQL-SGKIPPF 440

Query:   181 EFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN 240
                  +   S L LL +  N   G +P  V    + L++ +VGN +L G  P+ L  LVN
Sbjct:   441 -----ICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGN-RLTGQFPTELCKLVN 494

Query:   241 LEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLE 300
             L  + L  N+F+G +P  I    KLQRL L  N+F   +P+ I  L+ L+T N   N L 
Sbjct:   495 LSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLT 554

Query:   301 GSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILK 360
             G IPS +  C+             G++P E+  L  L I L LS+N+ +G +P   G L 
Sbjct:   555 GPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEI-LRLSENRFSGNIPFTIGNLT 613

Query:   361 NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF--FQGNIPSSLSSLRGIENLDLSRN 418
             +L  + +  N  SG IP  +G  + L Q+ MN ++  F G IP  + +L  +  L L+ N
Sbjct:   614 HLTELQMGGNLFSGSIPPQLGLLSSL-QIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNN 672

Query:   419 NLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLS 478
             +LSG IP   EN   L   N S+N+  G++P   +F N +  S  GN  LCGG    HL 
Sbjct:   673 HLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGG----HLR 728

Query:   479 TCSIKESKQSRSRSLK 494
             +C    S      SLK
Sbjct:   729 SCDPSHSSWPHISSLK 744

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 166/473 (35%), Positives = 240/473 (50%)

Query:     2 NELVGKVPGKLGSLSKLRILAMHRNN-LSGEIPSSFGNXXXXXXXXXXXNQFVGQIPETL 60
             N L G +P +LG LS L ++ +  N  +SG+IPS  G+               G +P +L
Sbjct:   187 NLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSL 246

Query:    61 SQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNL 120
              +LK++  L +    +SGEIP  + N S L  + +  N L GS+P ++G  L  LE L L
Sbjct:   247 GKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIG-QLTKLEQLFL 305

Query:   121 CRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHLGNGKKDD 179
              +N   G IP  I N SNL  + ++ N  SG +PS +  L  LE   IS N         
Sbjct:   306 WQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGS---- 361

Query:   180 LEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLV 239
                  ++ N S L  LQ+  N   G++P  +G L T+L +    +NQL G+IP GL +  
Sbjct:   362 --IPTTISNCSSLVQLQLDKNQISGLIPSELGTL-TKLTLFFAWSNQLEGSIPPGLADCT 418

Query:   240 NLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENML 299
             +L+ L L  N  TG IP  +  L  L +L L  N   G IP  IGN + L+ L    N +
Sbjct:   419 DLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRI 478

Query:   300 EGSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGIL 359
              G IPS +G  +             G +P E+   S L + +DLS N L G LP+    L
Sbjct:   479 TGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQM-IDLSNNSLEGSLPNPVSSL 537

Query:   360 KNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNN 419
               L  +D+S N+ SG+IP+S+G    L +L+++ N F G+IP+SL    G++ LDL  N 
Sbjct:   538 SGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNE 597

Query:   420 LSGRIPKYLENFPFLQ-NLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGG 471
             LSG IP  L +   L+  LNLS N   G++P K    N  +I +D + N+  G
Sbjct:   598 LSGEIPSELGDIENLEIALNLSSNRLTGKIPSKIASLNKLSI-LDLSHNMLEG 649

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	503
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-89
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-67
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-57
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-43
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  292 bits (748), Expect = 7e-89
 Identities = 192/480 (40%), Positives = 273/480 (56%), Gaps = 11/480 (2%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLS 61
           N L G++P  +GS S L++L +  N L G+IP+S  NL+SLE L+ ++NQ VGQIP  L 
Sbjct: 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG 209

Query: 62  QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
           Q+K + ++ LG N LSGEIP+ I  L+SLN++ +  N L G +PS LG  L NL+ L L 
Sbjct: 210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLY 268

Query: 122 RNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKI-LHKLEWVGISRNHLGNGKKDDL 180
           +N+ +GPIP SI +   L+ L ++ N  SG++P L I L  LE + +  N+   GK    
Sbjct: 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF-TGK---- 323

Query: 181 EFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN 240
               +L +  RL++LQ+  N F G +P+ +G     L +L +  N L G IP GL +  N
Sbjct: 324 -IPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGN 381

Query: 241 LEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLE 300
           L  L L  N   G IP S+     L+R+ L+ N F GE+PS    L L+  L+   N L+
Sbjct: 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441

Query: 301 GSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILK 360
           G I S      +L  L+L+ N   G +P +  G   L   LDLS+NQ +G +P   G L 
Sbjct: 442 GRINSRKWDMPSLQMLSLARNKFFGGLP-DSFGSKRLE-NLDLSRNQFSGAVPRKLGSLS 499

Query: 361 NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL 420
            L  + +SENKLSG+IP  + SC +L  L ++ N   G IP+S S +  +  LDLS+N L
Sbjct: 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559

Query: 421 SGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTC 480
           SG IPK L N   L  +N+S NH  G +P  G F   +A ++ GN +LCGG +   L  C
Sbjct: 560 SGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPC 619

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  233 bits (596), Expect = 2e-67
 Identities = 163/453 (35%), Positives = 239/453 (52%), Gaps = 20/453 (4%)

Query: 2   NELVGKVPGKLGSLS-KLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETL 60
           N+L G +P  + + S  LR L +  NN +G IP   G++ +LE L  S N   G+IP  +
Sbjct: 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI 160

Query: 61  SQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNL 120
                +  L LG N L G+IP S+ NL+SL ++ +  NQL G +P +LG  + +L+ + L
Sbjct: 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYL 219

Query: 121 CRNQFTGPIPASISNASNLMRLVIAKNGFSGKVP-SLKILHKLEWVGISRNHLGNGKKDD 179
             N  +G IP  I   ++L  L +  N  +G +P SL  L  L+++ + +N L       
Sbjct: 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG----- 274

Query: 180 LEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLV 239
                S+ +  +L  L +SDN+  G +PE V  L   L IL + +N   G IP  L +L 
Sbjct: 275 -PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN-LEILHLFSNNFTGKIPVALTSLP 332

Query: 240 NLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSI---GNLTLLITLNFEE 296
            L+ L L  N+F+G IP ++     L  L L  N   GEIP  +   GNL  LI  +   
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS--- 389

Query: 297 NMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNF 356
           N LEG IP SLG C++L  + L +N+ SG +P+E   L  L  +LD+S N L G + S  
Sbjct: 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL-PLVYFLDISNNNLQGRINSRK 448

Query: 357 GILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLS 416
             + +L  + ++ NK  G +P S GS  RLE L ++ N F G +P  L SL  +  L LS
Sbjct: 449 WDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507

Query: 417 RNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449
            N LSG IP  L +   L +L+LS N   G++P
Sbjct: 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  204 bits (521), Expect = 3e-57
 Identities = 138/412 (33%), Positives = 206/412 (50%), Gaps = 35/412 (8%)

Query: 38  NLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLS-SLNYICVP 96
           N S + ++  S     G+I   + +L  +  + L  N+LSG IP  I+  S SL Y+ + 
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 97  VNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSL 156
            N   GS+P   G  +PNLE L+L  N  +G IP  I + S+L  L +  N   GK+P  
Sbjct: 127 NNNFTGSIPR--GS-IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-- 181

Query: 157 KILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTR 216
                                      NSL N + LE L ++ N   G +P  +G + + 
Sbjct: 182 ---------------------------NSLTNLTSLEFLTLASNQLVGQIPRELGQMKS- 213

Query: 217 LRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFW 276
           L+ + +G N L G IP  +  L +L  L L  N  TG IP S+ +L  LQ L L  NK  
Sbjct: 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273

Query: 277 GEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSS 336
           G IP SI +L  LI+L+  +N L G IP  + + QNL  L+L +NN +G IP  +  L  
Sbjct: 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333

Query: 337 LSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFF 396
           L + L L  N+ +G +P N G   NL  +D+S N L+G+IP  + S   L +L++  N  
Sbjct: 334 LQV-LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392

Query: 397 QGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEV 448
           +G IP SL + R +  + L  N+ SG +P      P +  L++S N+ +G +
Sbjct: 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  164 bits (416), Expect = 2e-43
 Identities = 114/317 (35%), Positives = 174/317 (54%), Gaps = 10/317 (3%)

Query: 134 SNASNLMRLVIAKNGFSGKVPSLKI-LHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRL 192
           +N+S ++ + ++    SGK+ S    L  ++ + +S N L     DD+        +S L
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDI-----FTTSSSL 120

Query: 193 ELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFT 252
             L +S+NNF G +P   G++   L  L + NN L G IP+ + +  +L+ L LGGN   
Sbjct: 121 RYLNLSNNNFTGSIPR--GSIPN-LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177

Query: 253 GRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQN 312
           G+IP S+ +L  L+ L L  N+  G+IP  +G +  L  +    N L G IP  +G   +
Sbjct: 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237

Query: 313 LISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKL 372
           L  L+L  NNL+G IP+ +  L +L  YL L QN+L+GP+P +   L+ L ++D+S+N L
Sbjct: 238 LNHLDLVYNNLTGPIPSSLGNLKNLQ-YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296

Query: 373 SGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFP 432
           SG+IP  +     LE L +  N F G IP +L+SL  ++ L L  N  SG IPK L    
Sbjct: 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN 356

Query: 433 FLQNLNLSFNHFEGEVP 449
            L  L+LS N+  GE+P
Sbjct: 357 NLTVLDLSTNNLTGEIP 373

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.7 bits (181), Expect = 8e-14
 Identities = 34/90 (37%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 292 LNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGP 351
           L  +   L G IP+ + K ++L S+NLS N++ G IP  +  ++SL + LDLS N  NG 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV-LDLSYNSFNGS 481

Query: 352 LPSNFGILKNLGAIDISENKLSGQIPSSIG 381
           +P + G L +L  ++++ N LSG++P+++G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.9 bits (179), Expect = 1e-13
 Identities = 36/82 (43%), Positives = 47/82 (57%)

Query: 253 GRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQN 312
           G IP  I  L  LQ + L GN   G IP S+G++T L  L+   N   GSIP SLG+  +
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 313 LISLNLSNNNLSGTIPTEVIGL 334
           L  LNL+ N+LSG +P  + G 
Sbjct: 492 LRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.2 bits (177), Expect = 2e-13
 Identities = 36/85 (42%), Positives = 54/85 (63%)

Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
           L L    L G +P++   L++L +I++S N + G IP S+GS T LE L ++ N F G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 401 PSSLSSLRGIENLDLSRNNLSGRIP 425
           P SL  L  +  L+L+ N+LSGR+P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.0 bits (174), Expect = 5e-13
 Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 2/109 (1%)

Query: 364 AIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGR 423
            + +    L G IP+ I     L+ + ++GN  +GNIP SL S+  +E LDLS N+ +G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 424 IPKYLENFPFLQNLNLSFNHFEGEVP--IKGVFSNSSAISIDGNDNLCG 470
           IP+ L     L+ LNL+ N   G VP  + G   + ++ +   N  LCG
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.2 bits (172), Expect = 9e-13
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 1/89 (1%)

Query: 316 LNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQ 375
           L L N  L G IP ++  L  L   ++LS N + G +P + G + +L  +D+S N  +G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQ-SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 376 IPSSIGSCTRLEQLVMNGNFFQGNIPSSL 404
           IP S+G  T L  L +NGN   G +P++L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.7 bits (168), Expect = 3e-12
 Identities = 32/81 (39%), Positives = 47/81 (58%)

Query: 4   LVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQL 63
           L G +P  +  L  L+ + +  N++ G IP S G+++SLE L  S N F G IPE+L QL
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 64  KRMLYLLLGVNKLSGEIPFSI 84
             +  L L  N LSG +P ++
Sbjct: 490 TSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.1 bits (156), Expect = 9e-11
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 224 NNQ-LFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSS 282
           +NQ L G IP+ +  L +L+ ++L GN   G IP S+  +  L+ L L  N F G IP S
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 283 IGNLTLLITLNFEENMLEGSIPSSLG 308
           +G LT L  LN   N L G +P++LG
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 268 LALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTI 327
           L L+     G IP+ I  L  L ++N   N + G+IP SLG   +L  L+LS N+ +G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 328 PTEVIGLSSLSIYLDLSQNQLNGPLPSNFG 357
           P  +  L+SL I L+L+ N L+G +P+  G
Sbjct: 483 PESLGQLTSLRI-LNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 8e-09
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 204 GMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLY 263
           G +P  +  L   L+ + +  N + GNIP  L ++ +LE L L  N F G IP S+  L 
Sbjct: 432 GFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 264 KLQRLALEGNKFWGEIPSSIGNLTLLIT-LNFEEN 297
            L+ L L GN   G +P+++G   L     NF +N
Sbjct: 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 9e-09
 Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 54  GQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLP 113
           G IP  +S+L+ +  + L  N + G IP S+ +++SL  + +  N   GS+P  LG  L 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLT 490

Query: 114 NLEVLNLCRNQFTGPIPASI 133
           +L +LNL  N  +G +PA++
Sbjct: 491 SLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 76  LSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISN 135
           L G IP  I  L  L  I +  N ++G++P  LG ++ +LEVL+L  N F G IP S+  
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQ 488

Query: 136 ASNLMRLVIAKNGFSGKVPS 155
            ++L  L +  N  SG+VP+
Sbjct: 489 LTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.1 bits (122), Expect = 7e-07
 Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 9/234 (3%)

Query: 230 NIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLL 289
           +    L NL+ L  L L  N+    I   +++L  L  L L+ N    +IP  IG L   
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSN 141

Query: 290 ITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLN 349
           +      +    S+PS L    NL +L+LS N+LS  +P  +  LS+L+  LDLS N+++
Sbjct: 142 LKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNN-LDLSGNKIS 199

Query: 350 GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRG 409
             LP    +L  L  +D+S N +  ++ SS+ +   L  L ++ N  + ++P S+ +L  
Sbjct: 200 -DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSN 256

Query: 410 IENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISID 463
           +E LDLS N +S      L +   L+ L+LS N     +P+  +      + ++
Sbjct: 257 LETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLN 308

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETL 60
           N + G +P  LGS++ L +L +  N+ +G IP S G L+SL  L+ + N   G++P  L
Sbjct: 452 NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 71/248 (28%), Positives = 99/248 (39%), Gaps = 37/248 (14%)

Query: 112 LPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNH 171
           L NL  L+L  N  T   P      SNL  L ++ N        L+ L  L+ + +S N 
Sbjct: 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174

Query: 172 LGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNI 231
           L        +    L N S L  L +S N     LP  +  LS    + +  N+ +   +
Sbjct: 175 L-------SDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII--EL 224

Query: 232 PSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLIT 291
            S L NL NL  L L  N+                           ++P SIGNL+ L T
Sbjct: 225 LSSLSNLKNLSGLELSNNKLE-------------------------DLPESIGNLSNLET 259

Query: 292 LNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGP 351
           L+   N +  S  SSLG   NL  L+LS N+LS  +P   + L  L + L+L        
Sbjct: 260 LDLSNNQI--SSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALE 317

Query: 352 LPSNFGIL 359
           L  N  +L
Sbjct: 318 LKLNSILL 325

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 32/140 (22%)

Query: 98  NQ-LQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSL 156
           NQ L+G +P+D+   L +L+ +NL  N   G IP S+ + ++L  L ++ N F+G +P  
Sbjct: 427 NQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE- 484

Query: 157 KILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTR 216
                                       SL   + L +L ++ N+  G +P A+G     
Sbjct: 485 ----------------------------SLGQLTSLRILNLNGNSLSGRVPAALGGRLLH 516

Query: 217 LRILIVGNNQLFGNIPSGLR 236
                  +N     IP GLR
Sbjct: 517 RASFNFTDNAGLCGIP-GLR 535

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 61/188 (32%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 278 EIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSL 337
           +   ++ NL  L +L+   N L  +I S L +  NL SL+L NNN++   P   +  S+L
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNL 142

Query: 338 SIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ 397
              LDLS N++   LPS    L NL  +D+S N LS  +P  + + + L  L ++GN   
Sbjct: 143 K-ELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS 199

Query: 398 GNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNS 457
            ++P  +  L  +E LDLS N++   +   L N   L  L LS N  E      G  SN 
Sbjct: 200 -DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNL 257

Query: 458 SAISIDGN 465
             + +  N
Sbjct: 258 ETLDLSNN 265

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 79/317 (24%), Positives = 128/317 (40%), Gaps = 58/317 (18%)

Query: 111 TLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVP-SLKILHKLEWVGISR 169
           +L  L  ++L  ++    IP  +S A+NL  L ++      ++P S++ L+KLE + +SR
Sbjct: 632 SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690

Query: 170 NHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFG 229
                   ++LE + + +N   L  L +S  +     P    ++ST +  L +    +  
Sbjct: 691 C-------ENLEILPTGINLKSLYRLNLSGCSRLKSFP----DISTNISWLDLDETAI-E 738

Query: 230 NIPSGLR--NLVNLEFLHLGGNQFTGRI----PGSIVDLYKLQRLALEGNKFWGEIPSSI 283
             PS LR  NL  L    +   +   R+    P   +    L RL L       E+PSSI
Sbjct: 739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI 798

Query: 284 GNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDL 343
            NL  L  L  E              C NL +L  +  NL      ++ G S L  + D+
Sbjct: 799 QNLHKLEHLEIE-------------NCINLETLP-TGINLESLESLDLSGCSRLRTFPDI 844

Query: 344 SQNQLNGPLPSNFGILKNLGAIDISENKLSG----QIPSSIGSCTRLEQLVMNGNFFQGN 399
           S N                    IS+  LS     ++P  I   + L  L MNG      
Sbjct: 845 STN--------------------ISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR 884

Query: 400 IPSSLSSLRGIENLDLS 416
           +  ++S L+ +E +D S
Sbjct: 885 VSLNISKLKHLETVDFS 901

syringae 6; Provisional. Length = 1153

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFG 37
           +N   G +P  LG L+ LRIL ++ N+LSG +P++ G
Sbjct: 475 YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 18/60 (30%), Positives = 25/60 (41%)

Query: 264 KLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNL 323
            L+ L L  N+       +   L  L  L+   N L    P +     +L SL+LS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	503
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.82
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.28
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.25
PLN03150	623	hypothetical protein; Provisional	99.23
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.23
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.2
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.19
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.19
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.18
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.17
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.16
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.12
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.11
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.09
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.06
PLN03150	623	hypothetical protein; Provisional	99.04
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.01
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.01
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.96
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.76
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.75
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.67
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.67
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.61
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.61
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.53
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.36
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.32
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.29
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.24
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.22
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.15
KOG4341	483	consensus F-box protein containing LRR [General fu	98.1
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.09
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.06
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.04
KOG4341	483	consensus F-box protein containing LRR [General fu	98.04
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.93
PRK15386	426	type III secretion protein GogB; Provisional	97.92
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.92
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.9
PRK15386	426	type III secretion protein GogB; Provisional	97.86
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.65
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.43
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.02
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.97
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.96
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.59
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.44
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.14
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.05
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.9
KOG4308	478	consensus LRR-containing protein [Function unknown	94.66
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.2
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.1
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.17
smart00370	26	LRR Leucine-rich repeats, outliers.	91.36
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.36
KOG4308	478	consensus LRR-containing protein [Function unknown	90.76
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.22
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.17
smart00370	26	LRR Leucine-rich repeats, outliers.	89.17
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.34
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	82.26

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.7e-54  Score=466.59  Aligned_cols=470  Identities=40%  Similarity=0.647  Sum_probs=342.0

Q ss_pred             CccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCC
Q 040833            2 NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIP   81 (503)
Q Consensus         2 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~   81 (503)
                      |.+++.+|..++++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|
T Consensus       150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  229 (968)
T PLN00113        150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP  229 (968)
T ss_pred             CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             ccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCC
Q 040833           82 FSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILH  160 (503)
Q Consensus        82 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~  160 (503)
                      ..+.++++|++|++++|.+.+.+|..+.. +++|++|++++|.+++..|..+..+++|++|++++|.+.+..+. +..++
T Consensus       230 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  308 (968)
T PLN00113        230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ  308 (968)
T ss_pred             hhHhcCCCCCEEECcCceeccccChhHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence            55555555555555555555455554443 55556666655555555555555555666666665555544444 55556


Q ss_pred             CCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCC
Q 040833          161 KLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN  240 (503)
Q Consensus       161 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  240 (503)
                      +|+.|++++|.+..      ..+..+..+++|+.|++++|.+.+..|..+...+ +|+.+++++|.+.+..|..+..+++
T Consensus       309 ~L~~L~l~~n~~~~------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~  381 (968)
T PLN00113        309 NLEILHLFSNNFTG------KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGN  381 (968)
T ss_pred             CCcEEECCCCccCC------cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC-CCcEEECCCCeeEeeCChhHhCcCC
Confidence            66666666655544      3334455566677777777766666666666664 6777777777766666666666677


Q ss_pred             CcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcC
Q 040833          241 LEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSN  320 (503)
Q Consensus       241 L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  320 (503)
                      |+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..++.|+.+++++|.+.+..+..+..+++|++|++++
T Consensus       382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  461 (968)
T PLN00113        382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR  461 (968)
T ss_pred             CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence            77777777777767777777778888888888888777777788888888888888888777777777788888888888


Q ss_pred             CcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccC
Q 040833          321 NNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI  400 (503)
Q Consensus       321 n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~  400 (503)
                      |.+.+..|..+ ..+.+ +.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+
T Consensus       462 n~~~~~~p~~~-~~~~L-~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  539 (968)
T PLN00113        462 NKFFGGLPDSF-GSKRL-ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI  539 (968)
T ss_pred             ceeeeecCccc-ccccc-eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence            88877666654 34566 89999999999888989999999999999999999999999999999999999999999999


Q ss_pred             chhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCcccCCCCCCCCC
Q 040833          401 PSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTC  480 (503)
Q Consensus       401 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~~~~~~ls~~  480 (503)
                      |..|..+++|+.|++++|++++..|..+..+++|+.+++++|++.+..|..+.+..+....+.|||.+|+..+...++.|
T Consensus       540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c  619 (968)
T PLN00113        540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPC  619 (968)
T ss_pred             ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCC
Confidence            99999999999999999999999999999999999999999999999998888888888889999999987655566666


Q ss_pred             C
Q 040833          481 S  481 (503)
Q Consensus       481 ~  481 (503)
                      .
T Consensus       620 ~  620 (968)
T PLN00113        620 K  620 (968)
T ss_pred             c
Confidence            4

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1e-51  Score=448.23  Aligned_cols=459  Identities=35%  Similarity=0.559  Sum_probs=250.2

Q ss_pred             CccccCCCcccCCCCCCcEEEcccCcCCCCCCcccC-CCCCCCEEECCCCcccc----------------------CCCc
Q 040833            2 NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFG-NLSSLEALSASANQFVG----------------------QIPE   58 (503)
Q Consensus         2 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~n~i~~----------------------~~~~   58 (503)
                      |.+++.++.+|..+++|++|++++|.+.+..|..+. .+++|++|++++|.+.+                      ..|.
T Consensus        79 ~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~  158 (968)
T PLN00113         79 KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPN  158 (968)
T ss_pred             CCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCCh
Confidence            455666666666667777777766666655554432 55555555555555543                      3344


Q ss_pred             cccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCC
Q 040833           59 TLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASN  138 (503)
Q Consensus        59 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  138 (503)
                      .+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+.. +++|++|++++|.+++..|..+..+++
T Consensus       159 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~  237 (968)
T PLN00113        159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTS  237 (968)
T ss_pred             HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCC
Confidence            4444444444444444444444444444444444444444444444444432 444444444444444444444444455


Q ss_pred             CCEEecccCcCcccCCC-ccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccC
Q 040833          139 LMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRL  217 (503)
Q Consensus       139 L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  217 (503)
                      |++|++++|.+.+..+. +..+++|+.|++++|.+..      ..+..+..+++|++|++++|.+.+..|..+..++ +|
T Consensus       238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L  310 (968)
T PLN00113        238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG------PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ-NL  310 (968)
T ss_pred             CCEEECcCceeccccChhHhCCCCCCEEECcCCeeec------cCchhHhhccCcCEEECcCCeeccCCChhHcCCC-CC
Confidence            55555554444433332 4444445555554444432      2223333444455555555554444444444443 45


Q ss_pred             cEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCC
Q 040833          218 RILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEEN  297 (503)
Q Consensus       218 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  297 (503)
                      +.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|
T Consensus       311 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n  390 (968)
T PLN00113        311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN  390 (968)
T ss_pred             cEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence            55555555444444444444555555555555544444444444455555555555444444444444444444444444


Q ss_pred             cCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhc-------------------
Q 040833          298 MLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI-------------------  358 (503)
Q Consensus       298 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~-------------------  358 (503)
                      .+.+..|..+..+++|++|++++|++.+..|..+..++.+ +.+++++|.+.+..+..+..                   
T Consensus       391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p  469 (968)
T PLN00113        391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV-YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP  469 (968)
T ss_pred             EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC-CEEECcCCcccCccChhhccCCCCcEEECcCceeeeecC
Confidence            4443444444444555555555555544444444444444 44444444444333332222                   


Q ss_pred             ----CCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCC
Q 040833          359 ----LKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFL  434 (503)
Q Consensus       359 ----~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  434 (503)
                          .++|+.|++++|++++..|..+..+++|+.|++++|.+.+.+|..+..+++|++|+|++|.+++..|..+..+++|
T Consensus       470 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  549 (968)
T PLN00113        470 DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL  549 (968)
T ss_pred             cccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccC
Confidence                3456666666666666666667777777777888777777777777777888888888888877777777788888


Q ss_pred             CeeecCCCcCcccCCC-CCccCCCCceeccCCCCCc
Q 040833          435 QNLNLSFNHFEGEVPI-KGVFSNSSAISIDGNDNLC  469 (503)
Q Consensus       435 ~~L~l~~n~l~~~~~~-~~~~~~l~~l~~~~n~~~c  469 (503)
                      +.|++++|++++..|. ...+++|+.+++++|+..+
T Consensus       550 ~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             CEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            8888888888776553 4446777788888776554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1e-41  Score=316.91  Aligned_cols=408  Identities=22%  Similarity=0.211  Sum_probs=341.8

Q ss_pred             CCEEECCCCccccCCCccccCCC--CCCEEEcccceeeeeCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEE
Q 040833           42 LEALSASANQFVGQIPETLSQLK--RMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLN  119 (503)
Q Consensus        42 L~~L~l~~n~i~~~~~~~~~~l~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  119 (503)
                      -..|+.++..+....-..+..+-  .-+.|++++|++....+..|.++++|+.+++.+|.++ .+|.... ....|+.|+
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~  131 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLD  131 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEe
Confidence            45577777766543333344333  3345888888888777777888888888888888886 7776443 255688888


Q ss_pred             ccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECc
Q 040833          120 LCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQIS  198 (503)
Q Consensus       120 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~  198 (503)
                      +.+|.|+....+.++.++.|+.|||+.|.++..... +..-.++++|+++.|.|+....      ..|..+.+|.+|.++
T Consensus       132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~------~~F~~lnsL~tlkLs  205 (873)
T KOG4194|consen  132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLET------GHFDSLNSLLTLKLS  205 (873)
T ss_pred             eeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccc------ccccccchheeeecc
Confidence            888888877777788888888888888888765544 6677889999999999887443      455556789999999


Q ss_pred             CCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCccccc
Q 040833          199 DNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGE  278 (503)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  278 (503)
                      .|.++...+..|.++| +|+.|++..|++...-.-.|.++++|+.|.+..|.+....+.+|..+.++++|++..|++...
T Consensus       206 rNrittLp~r~Fk~L~-~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v  284 (873)
T KOG4194|consen  206 RNRITTLPQRSFKRLP-KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV  284 (873)
T ss_pred             cCcccccCHHHhhhcc-hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence            9999966677777787 899999999998755455789999999999999999988889999999999999999999988


Q ss_pred             CCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhc
Q 040833          279 IPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI  358 (503)
Q Consensus       279 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~  358 (503)
                      ...++-+++.|+.|++++|.|..+.+++++.+++|++|+++.|+++...+..+..+..+ ++|+|++|.+.......|..
T Consensus       285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L-e~LnLs~Nsi~~l~e~af~~  363 (873)
T KOG4194|consen  285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL-EELNLSHNSIDHLAEGAFVG  363 (873)
T ss_pred             hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh-hhhcccccchHHHHhhHHHH
Confidence            88889999999999999999999999999999999999999999997778888888888 99999999999877788999


Q ss_pred             CCCCCeEeCCCCcccccC---CccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCC
Q 040833          359 LKNLGAIDISENKLSGQI---PSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQ  435 (503)
Q Consensus       359 ~~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~  435 (503)
                      +.+|++|||++|.+...+   ...|.++++|++|++.+|++..+...+|.+++.|++|||.+|.|..+.+++|..+ .|+
T Consensus       364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk  442 (873)
T KOG4194|consen  364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELK  442 (873)
T ss_pred             hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhh
Confidence            999999999999987533   3468889999999999999998888899999999999999999998999999999 899


Q ss_pred             eeecCCCcCcccCCCCCccCCCCce
Q 040833          436 NLNLSFNHFEGEVPIKGVFSNSSAI  460 (503)
Q Consensus       436 ~L~l~~n~l~~~~~~~~~~~~l~~l  460 (503)
                      +|-+..-.+.|++...|..++|...
T Consensus       443 ~Lv~nSssflCDCql~Wl~qWl~~~  467 (873)
T KOG4194|consen  443 ELVMNSSSFLCDCQLKWLAQWLYRR  467 (873)
T ss_pred             hhhhcccceEEeccHHHHHHHHHhc
Confidence            9999999999888877766666443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-39  Score=302.69  Aligned_cols=396  Identities=21%  Similarity=0.212  Sum_probs=331.2

Q ss_pred             CCEEEcccceeeeeCCccccCC--CCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEe
Q 040833           66 MLYLLLGVNKLSGEIPFSIYNL--SSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLV  143 (503)
Q Consensus        66 L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  143 (503)
                      -+.|+.+++.+.......+.+.  +.-+.|++++|++. .+...++..+++|+++++..|.++ .+|..-....+++.|+
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~  131 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLD  131 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEe
Confidence            4668888888875444444444  34456999999998 555555566999999999999998 7888777788899999


Q ss_pred             cccCcCcccCCC-ccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEe
Q 040833          144 IAKNGFSGKVPS-LKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIV  222 (503)
Q Consensus       144 l~~n~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  222 (503)
                      |..|.+...... +..++.|+.|+++.|.++.....      .+..-.++++|++++|.|+......|..+. +|..|.+
T Consensus       132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~------sfp~~~ni~~L~La~N~It~l~~~~F~~ln-sL~tlkL  204 (873)
T KOG4194|consen  132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKP------SFPAKVNIKKLNLASNRITTLETGHFDSLN-SLLTLKL  204 (873)
T ss_pred             eeccccccccHHHHHhHhhhhhhhhhhchhhcccCC------CCCCCCCceEEeeccccccccccccccccc-hheeeec
Confidence            999999876554 88899999999999999874433      444457899999999999987777888875 8999999


Q ss_pred             eccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCccc
Q 040833          223 GNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGS  302 (503)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  302 (503)
                      +.|+++...+..|..+++|+.|++..|++....-..|.+++.|+.|.+..|.+.......|..+.++++|++..|++...
T Consensus       205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v  284 (873)
T KOG4194|consen  205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV  284 (873)
T ss_pred             ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence            99999977777889999999999999998855466889999999999999999988888899999999999999999988


Q ss_pred             CCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccC
Q 040833          303 IPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGS  382 (503)
Q Consensus       303 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  382 (503)
                      ...++.++++|+.|++++|.|...-+..+.-.+++ +.|+|++|+|+...+..|..+..|++|.|+.|+++..-..+|..
T Consensus       285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL-~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~  363 (873)
T KOG4194|consen  285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL-KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG  363 (873)
T ss_pred             hcccccccchhhhhccchhhhheeecchhhhcccc-eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence            88889999999999999999987777888888888 89999999999888888999999999999999998766778889


Q ss_pred             CCCCCEEECCCCcCcccC---chhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCc
Q 040833          383 CTRLEQLVMNGNFFQGNI---PSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSA  459 (503)
Q Consensus       383 ~~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~  459 (503)
                      +++|++|||++|.+...+   ...|.++++|+.|++.+|+++.+.-.+|..++.|++|||.+|.+-.+-|..-.--.|+.
T Consensus       364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~  443 (873)
T KOG4194|consen  364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKE  443 (873)
T ss_pred             hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhh
Confidence            999999999999887543   45688999999999999999977778899999999999999999876552211126667


Q ss_pred             eeccCCCCCccc
Q 040833          460 ISIDGNDNLCGG  471 (503)
Q Consensus       460 l~~~~n~~~c~~  471 (503)
                      |-+..-..+|+|
T Consensus       444 Lv~nSssflCDC  455 (873)
T KOG4194|consen  444 LVMNSSSFLCDC  455 (873)
T ss_pred             hhhcccceEEec
Confidence            777666777864

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.2e-41  Score=299.66  Aligned_cols=436  Identities=30%  Similarity=0.420  Sum_probs=361.8

Q ss_pred             cccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCC
Q 040833           10 GKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSS   89 (503)
Q Consensus        10 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~   89 (503)
                      ..+.++..+.+|++++|++. ..|.+++.+..++.++.++|++. .+|..+..+..|+++++++|++. .+++.++.+..
T Consensus        62 ~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~  138 (565)
T KOG0472|consen   62 EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLD  138 (565)
T ss_pred             HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhh
Confidence            35677888889999999888 67778888889999999999888 77888888999999999999888 67788888999


Q ss_pred             CcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEccc
Q 040833           90 LNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISR  169 (503)
Q Consensus        90 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~  169 (503)
                      |+.++..+|.+. ..|++++. +.+|..+++.+|.++ ..|...-++..|++++...|.+...++.++.+.+|..|++..
T Consensus       139 l~dl~~~~N~i~-slp~~~~~-~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~  215 (565)
T KOG0472|consen  139 LEDLDATNNQIS-SLPEDMVN-LSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR  215 (565)
T ss_pred             hhhhhccccccc-cCchHHHH-HHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh
Confidence            999999999887 88888886 888899999999888 555555558999999999998888888899999999999999


Q ss_pred             ccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHh-hccccCcEEEeeccccccccchhccCCCCCcEEEccC
Q 040833          170 NHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVG-NLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGG  248 (503)
Q Consensus       170 n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~  248 (503)
                      |.+        .+...|.+|..|.++.++.|.+. ..|.... .++ .+..|++++|++. ..|+.+..+.+|+.||+|+
T Consensus       216 Nki--------~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~-~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSN  284 (565)
T KOG0472|consen  216 NKI--------RFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLN-SLLVLDLRDNKLK-EVPDEICLLRSLERLDLSN  284 (565)
T ss_pred             ccc--------ccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccc-cceeeeccccccc-cCchHHHHhhhhhhhcccC
Confidence            987        44568888999999999999988 5666555 554 8999999999998 6778888899999999999


Q ss_pred             CcccccCCccccCCCCCCEEEccCCccccc--------------------------------------CCccc---cCCC
Q 040833          249 NQFTGRIPGSIVDLYKLQRLALEGNKFWGE--------------------------------------IPSSI---GNLT  287 (503)
Q Consensus       249 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--------------------------------------~~~~~---~~~~  287 (503)
                      |.++ .+|..++++ .|+.|-+.||.+..+                                      .+..|   ...-
T Consensus       285 N~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i  362 (565)
T KOG0472|consen  285 NDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAII  362 (565)
T ss_pred             Cccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhh
Confidence            9999 677888988 999999999976210                                      00001   1123


Q ss_pred             CCCEEEccCCcCcccCCccccC--CCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeE
Q 040833          288 LLITLNFEENMLEGSIPSSLGK--CQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAI  365 (503)
Q Consensus       288 ~L~~L~l~~n~~~~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L  365 (503)
                      +.+.|+++.-+++.++.+.|..  -.-++..+++.|++. ++|..+..+..+.+.+.+++|.+. -.+..+..+++|..|
T Consensus       363 ~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L  440 (565)
T KOG0472|consen  363 TTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFL  440 (565)
T ss_pred             hhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceee
Confidence            5677777777777444444432  234788899999987 788888888887788888888887 667778899999999


Q ss_pred             eCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCc
Q 040833          366 DISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE  445 (503)
Q Consensus       366 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  445 (503)
                      ++++|.+. .+|..+.++..||.|+++.|++. ..|..+..+..++.+-.++|++..+.+..+.++.+|..||+.+|.+.
T Consensus       441 ~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq  518 (565)
T KOG0472|consen  441 DLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ  518 (565)
T ss_pred             ecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh
Confidence            99999997 77888888889999999999998 78888877778888888889999777778999999999999999999


Q ss_pred             ccCCCCCccCCCCceeccCCCCC
Q 040833          446 GEVPIKGVFSNSSAISIDGNDNL  468 (503)
Q Consensus       446 ~~~~~~~~~~~l~~l~~~~n~~~  468 (503)
                      .++|..+...+++++++.|||+-
T Consensus       519 ~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  519 QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hCChhhccccceeEEEecCCccC
Confidence            99999999999999999999876

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=7.9e-38  Score=278.83  Aligned_cols=447  Identities=28%  Similarity=0.393  Sum_probs=372.8

Q ss_pred             CCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEc
Q 040833           16 SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICV   95 (503)
Q Consensus        16 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l   95 (503)
                      .-++.+.+++|.++ ..-+.+.++..+.+|++++|.+. ..|.+++.+..++.++.++|++. .+|..++.+..|..+++
T Consensus        45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC  121 (565)
T ss_pred             cchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence            45788999999998 45556789999999999999988 67888999999999999999998 89999999999999999


Q ss_pred             cCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCC
Q 040833           96 PVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNG  175 (503)
Q Consensus        96 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~  175 (503)
                      ++|.+. ++|.+++. +..++.++..+|+++ ..|..+..+.++..+++.+|.+....+..-.++.|++++...|.++  
T Consensus       122 s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~--  196 (565)
T KOG0472|consen  122 SSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE--  196 (565)
T ss_pred             ccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh--
Confidence            999998 89999987 899999999999998 7899999999999999999999988888666999999999998887  


Q ss_pred             CCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccC
Q 040833          176 KKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRI  255 (503)
Q Consensus       176 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~  255 (503)
                           ..++.+..+.+|+.|++..|++. ..| .|... ..+++++++.|.+.....+...+++++..||++.|+++ ..
T Consensus       197 -----tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gc-s~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~  267 (565)
T KOG0472|consen  197 -----TLPPELGGLESLELLYLRRNKIR-FLP-EFPGC-SLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EV  267 (565)
T ss_pred             -----cCChhhcchhhhHHHHhhhcccc-cCC-CCCcc-HHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cC
Confidence                 56778888899999999999998 555 44444 37999999999988444445569999999999999999 77


Q ss_pred             CccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCccc-----------------------C---------
Q 040833          256 PGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGS-----------------------I---------  303 (503)
Q Consensus       256 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-----------------------~---------  303 (503)
                      |..+..+++|+.||+++|.++ ..|..++++ .|+.|-+.+|++..+                       .         
T Consensus       268 Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e  345 (565)
T KOG0472|consen  268 PDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE  345 (565)
T ss_pred             chHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence            888889999999999999998 566678888 899999999876410                       0         


Q ss_pred             -----C----ccccCCCCCCEEECcCCcCcccCCcchhcccc--ccceeEccCCCCccCCCcchhcCCCCC-eEeCCCCc
Q 040833          304 -----P----SSLGKCQNLISLNLSNNNLSGTIPTEVIGLSS--LSIYLDLSQNQLNGPLPSNFGILKNLG-AIDISENK  371 (503)
Q Consensus       304 -----~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~--l~~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n~  371 (503)
                           +    .......+.+.|++++-+++ .+|...+....  .++..+++.|++. +.|..+..+..+. .+.+++|.
T Consensus       346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~  423 (565)
T KOG0472|consen  346 TAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNK  423 (565)
T ss_pred             ccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCc
Confidence                 0    01123456788888888887 67766555443  3478999999998 7777666555544 45666666


Q ss_pred             ccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC-
Q 040833          372 LSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-  450 (503)
Q Consensus       372 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-  450 (503)
                      ++ .+|..++.+++|..|+|++|.+. .+|..++.+..|+.||++.|++. ..|+++..+..++.+-.++|++....+. 
T Consensus       424 is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~  500 (565)
T KOG0472|consen  424 IS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSG  500 (565)
T ss_pred             cc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHH
Confidence            65 88888999999999999999988 77888999999999999999998 7889988888899999999999977776 


Q ss_pred             CCccCCCCceeccCCCC--------CcccCCCCCCCCCCCCCcc
Q 040833          451 KGVFSNSSAISIDGNDN--------LCGGISELHLSTCSIKESK  486 (503)
Q Consensus       451 ~~~~~~l~~l~~~~n~~--------~c~~~~~~~ls~~~~~~~~  486 (503)
                      .....+|+.+++..|..        .|..+.++++++|++..++
T Consensus       501 l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~Pr  544 (565)
T KOG0472|consen  501 LKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQPR  544 (565)
T ss_pred             hhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCCCH
Confidence            56678889999987732        2788899999999998544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=5.6e-35  Score=286.09  Aligned_cols=427  Identities=27%  Similarity=0.352  Sum_probs=310.4

Q ss_pred             CCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcE
Q 040833           13 GSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNY   92 (503)
Q Consensus        13 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~   92 (503)
                      .+.-+|++|++++|.+. .+|..+..+++|+.|.++.|.|. .+|.+..++.+|+++.|..|+.. ..|..+..+++|++
T Consensus        42 ~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~  118 (1081)
T KOG0618|consen   42 EKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQY  118 (1081)
T ss_pred             hheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccc
Confidence            34445899999999887 78888888999999999999888 66778888999999999998887 88888999999999


Q ss_pred             EEccCCCCcccCchhhhcCCCCCCEEEccCC-------------------cccccCCccccCCCCCCEEecccCcCcccC
Q 040833           93 ICVPVNQLQGSLPSDLGFTLPNLEVLNLCRN-------------------QFTGPIPASISNASNLMRLVIAKNGFSGKV  153 (503)
Q Consensus        93 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-------------------~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  153 (503)
                      |++++|.+. .+|.-+.. +..+..+..++|                   .+.+.++.....+..  .|++++|.+.  .
T Consensus       119 LdlS~N~f~-~~Pl~i~~-lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--~  192 (1081)
T KOG0618|consen  119 LDLSFNHFG-PIPLVIEV-LTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--V  192 (1081)
T ss_pred             cccchhccC-CCchhHHh-hhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh--h
Confidence            999999886 77765554 555555555555                   222222222222222  3555555544  2


Q ss_pred             CCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccch
Q 040833          154 PSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPS  233 (503)
Q Consensus       154 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  233 (503)
                      ..+..+++|+.+....|.+....          ..-++++.|+.++|.+....+   ...|.++++++++++.+. .+|+
T Consensus       193 ~dls~~~~l~~l~c~rn~ls~l~----------~~g~~l~~L~a~~n~l~~~~~---~p~p~nl~~~dis~n~l~-~lp~  258 (1081)
T KOG0618|consen  193 LDLSNLANLEVLHCERNQLSELE----------ISGPSLTALYADHNPLTTLDV---HPVPLNLQYLDISHNNLS-NLPE  258 (1081)
T ss_pred             hhhhhccchhhhhhhhcccceEE----------ecCcchheeeeccCcceeecc---ccccccceeeecchhhhh-cchH
Confidence            23445555555555555544311          112567777777777763222   223457888888888877 4558


Q ss_pred             hccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCC-C
Q 040833          234 GLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQ-N  312 (503)
Q Consensus       234 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~  312 (503)
                      |+..+.+|+.+++..|.+. ..|..+.....|+.+....|.+. -.|.......+|++|++..|.+....+..+.... +
T Consensus       259 wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~  336 (1081)
T KOG0618|consen  259 WIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNAS  336 (1081)
T ss_pred             HHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHH
Confidence            8888888888888888885 56666777778888888888776 3455566678888888888888744443343333 3


Q ss_pred             CCEEECcCCcCcccCCcchh-ccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEEC
Q 040833          313 LISLNLSNNNLSGTIPTEVI-GLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVM  391 (503)
Q Consensus       313 L~~L~l~~n~~~~~~~~~~~-~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  391 (503)
                      ++.|+.+.|++. ..|..-. ..+.+ +.|++.+|.+++.....+.++.+|+.|+|++|++.......+.+++.|++|+|
T Consensus       337 l~~ln~s~n~l~-~lp~~~e~~~~~L-q~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~L  414 (1081)
T KOG0618|consen  337 LNTLNVSSNKLS-TLPSYEENNHAAL-QELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNL  414 (1081)
T ss_pred             HHHHhhhhcccc-ccccccchhhHHH-HHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhc
Confidence            677777777765 4442222 22334 78999999999888888889999999999999998777778899999999999


Q ss_pred             CCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCccc-CCCCCccCCCCceeccCCCCCc
Q 040833          392 NGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGE-VPIKGVFSNSSAISIDGNDNLC  469 (503)
Q Consensus       392 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~l~~l~~~~n~~~c  469 (503)
                      |||.++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|.++-. .|.....++|++|+++||+|.-
T Consensus       415 SGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  415 SGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV  490 (1081)
T ss_pred             ccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccc
Confidence            999998 67899999999999999999998 556 678899999999999998854 3433333899999999998763

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.4e-34  Score=270.27  Aligned_cols=370  Identities=26%  Similarity=0.350  Sum_probs=308.2

Q ss_pred             CCCCCCEEEcccceee-eeCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCC
Q 040833           62 QLKRMLYLLLGVNKLS-GEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLM  140 (503)
Q Consensus        62 ~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~  140 (503)
                      -++-.+-+|+++|.++ ...|.....++.++.|.+....+. .+|+.+.. +.+|++|.+++|++. .+-..++.+|.|+
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~-~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLI-SVHGELSDLPRLR   81 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence            3455667788888777 566777788888888888888886 88888886 888899988888887 5556688888899


Q ss_pred             EEecccCcCcc--cCCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCc
Q 040833          141 RLVIAKNGFSG--KVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLR  218 (503)
Q Consensus       141 ~L~l~~n~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  218 (503)
                      .+.+..|.+..  .++.+..+..|..|++++|.+.       +.+..+...+++-.|++++|.|..+....|.++ +.|-
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-------EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinL-tDLL  153 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-------EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINL-TDLL  153 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-------hcchhhhhhcCcEEEEcccCccccCCchHHHhh-HhHh
Confidence            88888887753  3445888999999999999887       455667777889999999999985555556666 4789


Q ss_pred             EEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCccc-ccCCccccCCCCCCEEEccCC
Q 040833          219 ILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFW-GEIPSSIGNLTLLITLNFEEN  297 (503)
Q Consensus       219 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n  297 (503)
                      .|++++|++. .+|..++.+.+|++|++++|.+..---..+..+..|+.|.+++.+.+ .-+|..+..+.+|..++++.|
T Consensus       154 fLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N  232 (1255)
T KOG0444|consen  154 FLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN  232 (1255)
T ss_pred             hhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence            9999999987 66667888999999999999876433345667788999999988755 346778888999999999999


Q ss_pred             cCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCccc-ccC
Q 040833          298 MLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLS-GQI  376 (503)
Q Consensus       298 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~  376 (503)
                      .+. ..|+++..+++|+.|++++|.++ .+......+..+ ++|++|.|+++ ..|..+..+++|+.|++.+|.++ +-+
T Consensus       233 ~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~l-EtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGi  308 (1255)
T KOG0444|consen  233 NLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENL-ETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGI  308 (1255)
T ss_pred             CCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhh-hhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCC
Confidence            988 78889999999999999999998 666667777788 89999999999 88899999999999999999886 357


Q ss_pred             CccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833          377 PSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       377 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  449 (503)
                      |..++.+.+|+++..++|.+. ..|+.+..|++|+.|.|++|++. .+|+.+.-++.|+.||++.|+=.-.+|
T Consensus       309 PSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  309 PSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             ccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            889999999999999999886 88999999999999999999998 788999999999999999998664554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.1e-34  Score=270.55  Aligned_cols=372  Identities=25%  Similarity=0.331  Sum_probs=328.2

Q ss_pred             CCCCcEEEccCCCCc-ccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEE
Q 040833           87 LSSLNYICVPVNQLQ-GSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWV  165 (503)
Q Consensus        87 l~~L~~L~l~~n~~~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L  165 (503)
                      ++-.+-+++++|.+. +.+|.++.+ +++++.|.+...++. .+|+.++.+.+|++|.++.|++......+..++.|+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence            455667899999998 578998887 999999999999887 89999999999999999999998888789999999999


Q ss_pred             EcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEE
Q 040833          166 GISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLH  245 (503)
Q Consensus       166 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  245 (503)
                      .+..|.+...     .++..+..+..|++|++++|++. ..|..+.... +.-.|++++|+|.++....|.++..|-.||
T Consensus        84 ~~R~N~LKns-----GiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AK-n~iVLNLS~N~IetIPn~lfinLtDLLfLD  156 (1255)
T KOG0444|consen   84 IVRDNNLKNS-----GIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAK-NSIVLNLSYNNIETIPNSLFINLTDLLFLD  156 (1255)
T ss_pred             hhhccccccC-----CCCchhcccccceeeecchhhhh-hcchhhhhhc-CcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence            9999988753     45566777889999999999998 7788887765 889999999999977667788999999999


Q ss_pred             ccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCc-ccCCccccCCCCCCEEECcCCcCc
Q 040833          246 LGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLE-GSIPSSLGKCQNLISLNLSNNNLS  324 (503)
Q Consensus       246 ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~~~  324 (503)
                      +|+|++. .+|.....+..|+.|.+++|.+.-.-...+..+++|++|.+++.+-+ ..+|..+..+.+|..+|++.|.+.
T Consensus       157 LS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp  235 (1255)
T KOG0444|consen  157 LSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP  235 (1255)
T ss_pred             cccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence            9999998 67778889999999999999876443445667788999999987643 357888999999999999999998


Q ss_pred             ccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCc-ccCchh
Q 040833          325 GTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ-GNIPSS  403 (503)
Q Consensus       325 ~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~  403 (503)
                       ..|+++..++++ +.|+||+|+|+ ........+.+|++|+++.|+++ .+|.+++.++.|+.|.+.+|.++ +-+|..
T Consensus       236 -~vPecly~l~~L-rrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG  311 (1255)
T KOG0444|consen  236 -IVPECLYKLRNL-RRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG  311 (1255)
T ss_pred             -cchHHHhhhhhh-heeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccc
Confidence             899999999999 89999999999 55566777889999999999998 89999999999999999999887 347889


Q ss_pred             ccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCcccCC
Q 040833          404 LSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGIS  473 (503)
Q Consensus       404 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~~~  473 (503)
                      ++++.+|+.+..++|.+. ..|+.+..|+.|+.|.++.|++.+.+.....++.++.|+++.||.+.-.++
T Consensus       312 IGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  312 IGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             hhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence            999999999999999998 889999999999999999999998777888899999999999998865443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=9.1e-34  Score=277.64  Aligned_cols=455  Identities=24%  Similarity=0.307  Sum_probs=318.2

Q ss_pred             CCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCC
Q 040833            8 VPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNL   87 (503)
Q Consensus         8 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l   87 (503)
                      +|..+-....+..|+++.|.+....-+...+.-+|++|++++|.+. ..|..+..+++|+.|+++.|.|. ..|....++
T Consensus        13 ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~   90 (1081)
T KOG0618|consen   13 IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNM   90 (1081)
T ss_pred             cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhh
Confidence            4445555555777888888766333344455666888888888877 56777888888888888888887 677778888


Q ss_pred             CCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEc
Q 040833           88 SSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGI  167 (503)
Q Consensus        88 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l  167 (503)
                      .+|+++.+.+|.+. ..|.++.. +.+|++|++++|.+. ..|..+..+..++++..++|.....   ++... .+.+++
T Consensus        91 ~~l~~lnL~~n~l~-~lP~~~~~-lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~---lg~~~-ik~~~l  163 (1081)
T KOG0618|consen   91 RNLQYLNLKNNRLQ-SLPASISE-LKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR---LGQTS-IKKLDL  163 (1081)
T ss_pred             hcchhheeccchhh-cCchhHHh-hhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh---hcccc-chhhhh
Confidence            88888888888876 78888776 888888888888887 6777777666666666666611111   11111 444444


Q ss_pred             ccccCCCCCCCCcccccccc-------------------CCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccc
Q 040833          168 SRNHLGNGKKDDLEFVNSLV-------------------NASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLF  228 (503)
Q Consensus       168 ~~n~l~~~~~~~~~~~~~l~-------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  228 (503)
                      ..|.+..      .+.....                   .+++|+.+....|++....-    .. ++++.|..++|.+.
T Consensus       164 ~~n~l~~------~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~----~g-~~l~~L~a~~n~l~  232 (1081)
T KOG0618|consen  164 RLNVLGG------SFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEI----SG-PSLTALYADHNPLT  232 (1081)
T ss_pred             hhhhccc------chhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEe----cC-cchheeeeccCcce
Confidence            4444433      2222222                   23334444433333321100    01 25666666666655


Q ss_pred             cccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCcccc
Q 040833          229 GNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLG  308 (503)
Q Consensus       229 ~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  308 (503)
                      ....  -....+|++++++.+.+. .+|.++..+.+|+.++...|.++ ..|..+...++|+.|.+.+|.+. -.|....
T Consensus       233 ~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le  307 (1081)
T KOG0618|consen  233 TLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLE  307 (1081)
T ss_pred             eecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccc
Confidence            2211  122357888888888887 45577888888888888888886 55666677788888888888887 4455667


Q ss_pred             CCCCCCEEECcCCcCcccCCcchhccccc-cceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCC
Q 040833          309 KCQNLISLNLSNNNLSGTIPTEVIGLSSL-SIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLE  387 (503)
Q Consensus       309 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~l-~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  387 (503)
                      ..++|++|++..|.+. ..|..+...... +..++.+.|++.......=...+.|+.|++.+|.+++..-..+-+.++|+
T Consensus       308 ~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLK  386 (1081)
T KOG0618|consen  308 GLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLK  386 (1081)
T ss_pred             ccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccccee
Confidence            7888889999888887 555544433222 36677777777643222222356789999999999987777788899999


Q ss_pred             EEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCC
Q 040833          388 QLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDN  467 (503)
Q Consensus       388 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~  467 (503)
                      .|+|++|++.......+.++..|++|+||+|+++ .+|..+..++.|++|..++|.+. ..|....++.|+.+|++-|.-
T Consensus       387 VLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L  464 (1081)
T KOG0618|consen  387 VLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNL  464 (1081)
T ss_pred             eeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchh
Confidence            9999999999666667889999999999999999 66788999999999999999999 556788899999999987622


Q ss_pred             C--------c-ccCCCCCCCCCCCCCcccccc
Q 040833          468 L--------C-GGISELHLSTCSIKESKQSRS  490 (503)
Q Consensus       468 ~--------c-~~~~~~~ls~~~~~~~~~~~~  490 (503)
                      -        . ..+++||+|+|.-..++...+
T Consensus       465 ~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l  496 (1081)
T KOG0618|consen  465 SEVTLPEALPSPNLKYLDLSGNTRLVFDHKTL  496 (1081)
T ss_pred             hhhhhhhhCCCcccceeeccCCcccccchhhh
Confidence            1        1 567899999997544444433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=6.2e-28  Score=215.47  Aligned_cols=274  Identities=22%  Similarity=0.227  Sum_probs=131.0

Q ss_pred             CcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEccc-ceeeeeCCccccCCCCCcEEEcc
Q 040833           18 LRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGV-NKLSGEIPFSIYNLSSLNYICVP   96 (503)
Q Consensus        18 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~   96 (503)
                      ...|+|..|.|+.+.+.+|..+++|+.||+++|.|+.+.|++|+.++.|-.|-+.+ |+|+......|+++..|+.|.+.
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            44555666666655555566666666666666666656666666665555544444 55554444456666666666665


Q ss_pred             CCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccC-------------CCccCCCCCc
Q 040833           97 VNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKV-------------PSLKILHKLE  163 (503)
Q Consensus        97 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-------------~~l~~l~~L~  163 (503)
                      -|++. .++...++.+++|..|.+.+|.+..+-...|..+..++.+.+..|.+...-             ..++...-..
T Consensus       149 an~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  149 ANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             hhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            55554 555555555666666666666555333335555555555555555432100             0011111111


Q ss_pred             EEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCch-hHhhccccCcEEEeeccccccccchhccCCCCCc
Q 040833          164 WVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPE-AVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLE  242 (503)
Q Consensus       164 ~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  242 (503)
                      -..+.+.++......  ++...   ...+..--.+.+......|. .|..++ +|+++++++|.++.+-..+|....+++
T Consensus       228 p~rl~~~Ri~q~~a~--kf~c~---~esl~s~~~~~d~~d~~cP~~cf~~L~-~L~~lnlsnN~i~~i~~~aFe~~a~l~  301 (498)
T KOG4237|consen  228 PYRLYYKRINQEDAR--KFLCS---LESLPSRLSSEDFPDSICPAKCFKKLP-NLRKLNLSNNKITRIEDGAFEGAAELQ  301 (498)
T ss_pred             hHHHHHHHhcccchh--hhhhh---HHhHHHhhccccCcCCcChHHHHhhcc-cceEeccCCCccchhhhhhhcchhhhh
Confidence            111111111111000  00000   00000000111112222222 233443 555555555555555555555555555


Q ss_pred             EEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCc
Q 040833          243 FLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENM  298 (503)
Q Consensus       243 ~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  298 (503)
                      +|.+..|.+.......|.++..|+.|++.+|+++...|.+|.....|.+|++-.|+
T Consensus       302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence            55555555554444555555555555555555555555555555555555554444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=7.9e-28  Score=214.80  Aligned_cols=299  Identities=19%  Similarity=0.145  Sum_probs=227.1

Q ss_pred             EcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEccC-CCC
Q 040833           22 AMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPV-NQL  100 (503)
Q Consensus        22 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~~  100 (503)
                      +-++-.++ ..|..+.  +....+.+..|.|+.+.+.+|+.+++||.|||++|.|+.+-|++|.++..|.+|-+.+ |+|
T Consensus        52 dCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   52 DCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             EccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            34455555 5666554  5678899999999999999999999999999999999999999999999998877776 889


Q ss_pred             cccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEEEcccccCCCCCCC-
Q 040833          101 QGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHLGNGKKD-  178 (503)
Q Consensus       101 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~-  178 (503)
                      + .+|...|.++..|+.|.+..|.+..+..+.|..++++..|.+.+|.+...... +..+..++.+.+..|.+.....- 
T Consensus       129 ~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~  207 (498)
T KOG4237|consen  129 T-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP  207 (498)
T ss_pred             h-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence            8 99999999999999999999999988888999999999999999999876664 88888999988887763221100 


Q ss_pred             -----CccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccc-hhccCCCCCcEEEccCCccc
Q 040833          179 -----DLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIP-SGLRNLVNLEFLHLGGNQFT  252 (503)
Q Consensus       179 -----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~ls~n~~~  252 (503)
                           ....+..++......-..+.+..+..+.+..|......+..--.+.+......| ..|..+++|++|++++|.++
T Consensus       208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~  287 (498)
T KOG4237|consen  208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT  287 (498)
T ss_pred             hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence                 001111111112122222222333333333332211111111122332322333 35889999999999999999


Q ss_pred             ccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCc
Q 040833          253 GRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLS  324 (503)
Q Consensus       253 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  324 (503)
                      .+-+.+|.+...+++|.+.+|++.......|.++..|++|++++|+|+...|.+|....+|.+|++-.|++.
T Consensus       288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            999999999999999999999998777788999999999999999999889999999999999999988764

>PLN03210 Resistant to P

Probab=99.93  E-value=1.7e-23  Score=228.17  Aligned_cols=339  Identities=20%  Similarity=0.252  Sum_probs=179.5

Q ss_pred             cccCCCCCcEEEccCCCC------cccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCc
Q 040833           83 SIYNLSSLNYICVPVNQL------QGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSL  156 (503)
Q Consensus        83 ~~~~l~~L~~L~l~~n~~------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l  156 (503)
                      +|.++++|+.|.++.+..      ...+|..+..-.++|+.|.+.++.++ .+|..+ ...+|++|++.++.+......+
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~~~~  630 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLWDGV  630 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccccccccc
Confidence            455555555555543321      11234444332234555555555554 444444 3455555555555554444445


Q ss_pred             cCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhcc
Q 040833          157 KILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLR  236 (503)
Q Consensus       157 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  236 (503)
                      ..+++|+.++++++....       ....+..+++|++|++++|.....+|..+..++ +|+.|++++|.....+|..+ 
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~-------~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~-~L~~L~L~~c~~L~~Lp~~i-  701 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLK-------EIPDLSMATNLETLKLSDCSSLVELPSSIQYLN-KLEDLDMSRCENLEILPTGI-  701 (1153)
T ss_pred             ccCCCCCEEECCCCCCcC-------cCCccccCCcccEEEecCCCCccccchhhhccC-CCCEEeCCCCCCcCccCCcC-
Confidence            555555555555443211       111234455566666666544445555555554 56666666654333444333 


Q ss_pred             CCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcc-------cCCccccC
Q 040833          237 NLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEG-------SIPSSLGK  309 (503)
Q Consensus       237 ~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~-------~~~~~~~~  309 (503)
                      ++++|+.|++++|......|..   ..+|+.|++++|.+. ..|..+ .+++|++|.+.++....       ..+.....
T Consensus       702 ~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~  776 (1153)
T PLN03210        702 NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTML  776 (1153)
T ss_pred             CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhc
Confidence            4566666666666433233321   235666666666654 233322 35556666655533211       01111223


Q ss_pred             CCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEE
Q 040833          310 CQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQL  389 (503)
Q Consensus       310 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  389 (503)
                      +++|++|++++|.....+|..+..++++ +.|++++|.....+|..+ .+++|++|++++|......|..   .++|+.|
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L-~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L  851 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLHKL-EHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDL  851 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCCCC-CEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEe
Confidence            4567777777766555666666666666 677776664333444443 4667777777776543333332   2467777


Q ss_pred             ECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCc
Q 040833          390 VMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNH  443 (503)
Q Consensus       390 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  443 (503)
                      +|++|.++ .+|..+..+++|+.|+|++|+--..+|..+..+++|+.+++++|.
T Consensus       852 ~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        852 NLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            77777776 556667777777777777754333455556666777777777774

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.92  E-value=8e-24  Score=230.64  Aligned_cols=337  Identities=23%  Similarity=0.258  Sum_probs=147.2

Q ss_pred             cccCCCCCCCEEECCCCc------cccCCCccccCCC-CCCEEEcccceeeeeCCccccCCCCCcEEEccCCCCcccCch
Q 040833           34 SSFGNLSSLEALSASANQ------FVGQIPETLSQLK-RMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPS  106 (503)
Q Consensus        34 ~~~~~l~~L~~L~l~~n~------i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  106 (503)
                      .+|.++++|+.|.+..+.      +...+|..|..++ +|+.|++.++.+. .+|..| ...+|++|++.++.+. .++.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence            445556666666554332      1223344444442 3555555555554 444444 3455555555555554 4444


Q ss_pred             hhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEEEcccccCCCCCCCCcccccc
Q 040833          107 DLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHLGNGKKDDLEFVNS  185 (503)
Q Consensus       107 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  185 (503)
                      .+. .+++|+.|+++++.....+|. +..+++|+.|++++|......+. +..+++|+.|++++|..-.      .++..
T Consensus       629 ~~~-~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~------~Lp~~  700 (1153)
T PLN03210        629 GVH-SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE------ILPTG  700 (1153)
T ss_pred             ccc-cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC------ccCCc
Confidence            443 255555555555433223332 44555555555555543333332 5555555555555543211      11111


Q ss_pred             ccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCccc-------ccCCcc
Q 040833          186 LVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFT-------GRIPGS  258 (503)
Q Consensus       186 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~-------~~~~~~  258 (503)
                       .++++|+.|++++|.....+|.    .+++++.|+++++.+. .+|..+ .+++|++|++.++...       ...+..
T Consensus       701 -i~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~  773 (1153)
T PLN03210        701 -INLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLM  773 (1153)
T ss_pred             -CCCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhh
Confidence             1345555555555533322222    1234555555555543 223222 3444555555442211       001111


Q ss_pred             ccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhcccccc
Q 040833          259 IVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLS  338 (503)
Q Consensus       259 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~  338 (503)
                      +...+.|+.|++++|......|..+..+++|+.|++++|......|... .+++|++|++++|......|...   ..+ 
T Consensus       774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~---~nL-  848 (1153)
T PLN03210        774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS---TNI-  848 (1153)
T ss_pred             hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc---ccc-
Confidence            1223345555555554443444444555555555555443222333322 34455555555543322222211   122 


Q ss_pred             ceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCC
Q 040833          339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGN  394 (503)
Q Consensus       339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  394 (503)
                      +.|++++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|
T Consensus       849 ~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        849 SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            44444444444 33444444444455554443222233333444444444444444

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.82  E-value=3e-19  Score=181.37  Aligned_cols=259  Identities=27%  Similarity=0.325  Sum_probs=116.6

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCC
Q 040833          114 NLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLE  193 (503)
Q Consensus       114 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~  193 (503)
                      +-..|+++.+.++ .+|..+.  ++|+.|++.+|.+...+.   ..++|++|++++|.++....          ..++|+
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~----------lp~sL~  265 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----------LPPGLL  265 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccC----------cccccc
Confidence            3555666666665 4555443  356666666665554322   13455666666655543210          023455


Q ss_pred             EEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCC
Q 040833          194 LLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGN  273 (503)
Q Consensus       194 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n  273 (503)
                      .|++++|.+. .+|.    .+..|+.|++++|.+.. +|.   ..++|+.|++++|.+++. |..   ...|+.|++++|
T Consensus       266 ~L~Ls~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N  332 (788)
T PRK15387        266 ELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNN  332 (788)
T ss_pred             eeeccCCchh-hhhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC---cccccccccccC
Confidence            6666665554 2222    22345555565555542 222   124555566655555532 211   123455555555


Q ss_pred             cccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCC
Q 040833          274 KFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLP  353 (503)
Q Consensus       274 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~  353 (503)
                      .+++ +|.   -.++|+.|++++|.++. +|..   .++|+.|++++|.+. .+|...   ..+ +.|++++|.++. +|
T Consensus       333 ~L~~-LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l~---~~L-~~LdLs~N~Lt~-LP  398 (788)
T PRK15387        333 QLTS-LPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP---SGL-KELIVSGNRLTS-LP  398 (788)
T ss_pred             cccc-ccc---cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCcccc---ccc-ceEEecCCcccC-CC
Confidence            5542 221   11345555555555552 2211   234445555555544 233211   122 444555554442 22


Q ss_pred             cchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccc
Q 040833          354 SNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGR  423 (503)
Q Consensus       354 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  423 (503)
                      ..   .++|+.|++++|.++ .+|..   ..+|+.|++++|.++ .+|..+..+++|+.|+|++|++++.
T Consensus       399 ~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        399 VL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             Cc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence            11   134444555555444 22321   123444444444444 3344444444444445544444433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=4.9e-19  Score=179.85  Aligned_cols=262  Identities=27%  Similarity=0.324  Sum_probs=200.2

Q ss_pred             CCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhcccc
Q 040833          137 SNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTR  216 (503)
Q Consensus       137 ~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  216 (503)
                      .+-..|+++.+.+...++.+.  ++|+.|++.+|.++....          ..++|++|++++|.++. +|.    .+++
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~----------lp~~Lk~LdLs~N~Lts-LP~----lp~s  263 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----------LPPELRTLEVSGNQLTS-LPV----LPPG  263 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC----------CCCCCcEEEecCCccCc-ccC----cccc
Confidence            456678999998886555454  479999999999885321          14789999999999984 443    3458


Q ss_pred             CcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccC
Q 040833          217 LRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEE  296 (503)
Q Consensus       217 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  296 (503)
                      |+.|++++|.+.. ++..   ..+|+.|++++|.++. +|.   ..++|+.|++++|.+.+. |..   ...|+.|++++
T Consensus       264 L~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~  331 (788)
T PRK15387        264 LLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYN  331 (788)
T ss_pred             cceeeccCCchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC---ccccccccccc
Confidence            9999999998873 3332   3578899999999884 443   346899999999998853 332   35688999999


Q ss_pred             CcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccC
Q 040833          297 NMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQI  376 (503)
Q Consensus       297 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  376 (503)
                      |.+.. +|.   ...+|++|++++|+++ .+|...   ..+ +.|++++|.+.. +|..   ..+|+.|++++|.++ .+
T Consensus       332 N~L~~-LP~---lp~~Lq~LdLS~N~Ls-~LP~lp---~~L-~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~L  397 (788)
T PRK15387        332 NQLTS-LPT---LPSGLQELSVSDNQLA-SLPTLP---SEL-YKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SL  397 (788)
T ss_pred             Ccccc-ccc---cccccceEecCCCccC-CCCCCC---ccc-ceehhhcccccc-Cccc---ccccceEEecCCccc-CC
Confidence            99884 332   1258999999999998 455432   233 789999999984 4543   357999999999998 45


Q ss_pred             CccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833          377 PSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       377 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  449 (503)
                      |..   .++|+.|++++|.+++ +|..   ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+
T Consensus       398 P~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        398 PVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             CCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence            543   3579999999999984 5653   357889999999998 678889999999999999999997654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.77  E-value=5.5e-20  Score=175.00  Aligned_cols=251  Identities=22%  Similarity=0.226  Sum_probs=132.5

Q ss_pred             cCcEEEeeccccccc----cchhccCCCCCcEEEccCCcccc------cCCccccCCCCCCEEEccCCcccccCCccccC
Q 040833          216 RLRILIVGNNQLFGN----IPSGLRNLVNLEFLHLGGNQFTG------RIPGSIVDLYKLQRLALEGNKFWGEIPSSIGN  285 (503)
Q Consensus       216 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~n~~~~------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  285 (503)
                      .++.+.++++.+.+.    ++..+...+++++++++++.+.+      ..+..+..+++|+.|++++|.+....+..+..
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            345555554444221    22223344445555555544331      11223444555555666555554333333322


Q ss_pred             CC---CCCEEEccCCcCccc----CCccccCC-CCCCEEECcCCcCccc----CCcchhccccccceeEccCCCCccCC-
Q 040833          286 LT---LLITLNFEENMLEGS----IPSSLGKC-QNLISLNLSNNNLSGT----IPTEVIGLSSLSIYLDLSQNQLNGPL-  352 (503)
Q Consensus       286 ~~---~L~~L~l~~n~~~~~----~~~~~~~~-~~L~~L~l~~n~~~~~----~~~~~~~~~~l~~~L~l~~n~l~~~~-  352 (503)
                      +.   +|++|++++|.+.+.    ....+..+ ++|++|++++|.+++.    ....+..+..+ ++|++++|.+++.. 
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~  182 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL-KELNLANNGIGDAGI  182 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc-CEEECcCCCCchHHH
Confidence            22   366666666655421    11223344 5666666666665522    12233333444 66666666665321 


Q ss_pred             ---CcchhcCCCCCeEeCCCCccccc----CCccccCCCCCCEEECCCCcCcccCchhcc-----CCCCCCEEeCCCCcc
Q 040833          353 ---PSNFGILKNLGAIDISENKLSGQ----IPSSIGSCTRLEQLVMNGNFFQGNIPSSLS-----SLRGIENLDLSRNNL  420 (503)
Q Consensus       353 ---~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l  420 (503)
                         +..+...++|++|++++|.+++.    ....+..+++|++|++++|.+++.....+.     ..++|++|++++|.+
T Consensus       183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence               22233455778888887777532    233455677788888888877753222221     236788888888877


Q ss_pred             ccc----cCccCcCCCCCCeeecCCCcCcccCC-----CCCcc-CCCCceeccCCCC
Q 040833          421 SGR----IPKYLENFPFLQNLNLSFNHFEGEVP-----IKGVF-SNSSAISIDGNDN  467 (503)
Q Consensus       421 ~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~-~~l~~l~~~~n~~  467 (503)
                      ++.    ....+..+++|+++++++|.+.....     ....+ +.++.+++.+|||
T Consensus       263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            522    23345566778888888888774311     12223 5677777777764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.77  E-value=6.3e-20  Score=174.59  Aligned_cols=210  Identities=24%  Similarity=0.316  Sum_probs=134.8

Q ss_pred             hccCCCCCcEEEccCCcccccCCccccCCCC---CCEEEccCCccccc----CCccccCC-CCCCEEEccCCcCccc---
Q 040833          234 GLRNLVNLEFLHLGGNQFTGRIPGSIVDLYK---LQRLALEGNKFWGE----IPSSIGNL-TLLITLNFEENMLEGS---  302 (503)
Q Consensus       234 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~---L~~L~l~~n~~~~~----~~~~~~~~-~~L~~L~l~~n~~~~~---  302 (503)
                      .+..+++|++|++++|.+.+..+..+..+..   |++|++++|.+.+.    ....+..+ ++|++|++++|.++..   
T Consensus        76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence            4455667777777776665433333333333   77777777766521    12233444 6777777777776632   


Q ss_pred             -CCccccCCCCCCEEECcCCcCcccC----CcchhccccccceeEccCCCCccCC----CcchhcCCCCCeEeCCCCccc
Q 040833          303 -IPSSLGKCQNLISLNLSNNNLSGTI----PTEVIGLSSLSIYLDLSQNQLNGPL----PSNFGILKNLGAIDISENKLS  373 (503)
Q Consensus       303 -~~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~l~~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~  373 (503)
                       ....+..+++|++|++++|.+.+..    +..+...+.+ +.|++++|.+.+..    ...+..+++|++|++++|.++
T Consensus       156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L-~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNL-EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCC-CEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence             2234555667788888777776321    2223334455 77888888776432    234556788999999999887


Q ss_pred             ccCCcccc-----CCCCCCEEECCCCcCcc----cCchhccCCCCCCEEeCCCCccccc----cCccCcCC-CCCCeeec
Q 040833          374 GQIPSSIG-----SCTRLEQLVMNGNFFQG----NIPSSLSSLRGIENLDLSRNNLSGR----IPKYLENF-PFLQNLNL  439 (503)
Q Consensus       374 ~~~~~~~~-----~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~-~~L~~L~l  439 (503)
                      +.....+.     ..+.|+.|++++|.+++    .+...+..+++|+++++++|.++..    ....+... +.|+++++
T Consensus       235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~  314 (319)
T cd00116         235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWV  314 (319)
T ss_pred             hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhccc
Confidence            53222221     24789999999999873    2334566778999999999999855    33444555 78999999


Q ss_pred             CCCcC
Q 040833          440 SFNHF  444 (503)
Q Consensus       440 ~~n~l  444 (503)
                      .+|++
T Consensus       315 ~~~~~  319 (319)
T cd00116         315 KDDSF  319 (319)
T ss_pred             CCCCC
Confidence            98875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=4.3e-18  Score=174.12  Aligned_cols=248  Identities=26%  Similarity=0.400  Sum_probs=115.3

Q ss_pred             CCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833          192 LELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE  271 (503)
Q Consensus       192 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~  271 (503)
                      ...|++++++++ .+|..+   |+.++.|++++|.+.. +|..+.  .+|++|++++|.++ .+|..+.  ..|+.|+++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            445555555544 233222   2345555555555552 232221  35555555555555 2233222  245555555


Q ss_pred             CCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccC
Q 040833          272 GNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGP  351 (503)
Q Consensus       272 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~  351 (503)
                      +|.+. .+|..+.  .+|+.|++++|.+.. +|..+  .++|+.|++++|.++ .+|..+.  ..+ +.|++++|.++. 
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~lp--~sL-~~L~Ls~N~Lt~-  318 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIR-TLPAHLP--SGI-THLNVQSNSLTA-  318 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccCc-ccccc--CCCCcEEECCCCccc-cCcccch--hhH-HHHHhcCCcccc-
Confidence            55555 2233221  355556665555552 33322  135556666665555 2333221  122 555556655552 


Q ss_pred             CCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCC
Q 040833          352 LPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENF  431 (503)
Q Consensus       352 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  431 (503)
                      +|..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|.++ .+|..+.  ++|++|+|++|+++. +|..+.  
T Consensus       319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--  387 (754)
T PRK15370        319 LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--  387 (754)
T ss_pred             CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--
Confidence            23222  2455566666665552 343332  45666666666555 3344332  456666666665552 232221  


Q ss_pred             CCCCeeecCCCcCcccCCC----CCccCCCCceeccCCCCCccc
Q 040833          432 PFLQNLNLSFNHFEGEVPI----KGVFSNSSAISIDGNDNLCGG  471 (503)
Q Consensus       432 ~~L~~L~l~~n~l~~~~~~----~~~~~~l~~l~~~~n~~~c~~  471 (503)
                      ++|+.|++++|.+...+..    ....+.+..+++.+||.....
T Consensus       388 ~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~t  431 (754)
T PRK15370        388 AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERT  431 (754)
T ss_pred             HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHH
Confidence            2455566666665532211    111244455555565554433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=2.1e-17  Score=169.16  Aligned_cols=225  Identities=26%  Similarity=0.452  Sum_probs=124.7

Q ss_pred             CCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEc
Q 040833          191 RLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLAL  270 (503)
Q Consensus       191 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l  270 (503)
                      .++.|++++|.+. .+|..+.   ++|++|++++|.+.. +|..+.  .+|+.|++++|.+. .+|..+.  ..|+.|++
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            4666666666655 3333322   356666666666552 333222  35666666666665 3343332  35666666


Q ss_pred             cCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCcc
Q 040833          271 EGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNG  350 (503)
Q Consensus       271 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~  350 (503)
                      ++|.+.. .|..+.  ++|+.|++++|.+.. .|..+  .++|+.|++++|.+. .+|..+.  +++ +.|++++|.++.
T Consensus       270 s~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt-~LP~~l~--~sL-~~L~Ls~N~Lt~  339 (754)
T PRK15370        270 FHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLT-ALPETLP--PGL-KTLEAGENALTS  339 (754)
T ss_pred             cCCccCc-cccccC--CCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCccc-cCCcccc--ccc-eeccccCCcccc
Confidence            6666652 343332  456666666666653 23222  235666667766665 3343222  233 666777776663


Q ss_pred             CCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCcc---
Q 040833          351 PLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKY---  427 (503)
Q Consensus       351 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---  427 (503)
                       +|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|.++ .+|..+.  ..|+.|++++|++. .+|..   
T Consensus       340 -LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~  409 (754)
T PRK15370        340 -LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPH  409 (754)
T ss_pred             -CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHH
Confidence             444332  56777777777766 4454442  46777777777776 3444433  35777777777776 33332   


Q ss_pred             -CcCCCCCCeeecCCCcCc
Q 040833          428 -LENFPFLQNLNLSFNHFE  445 (503)
Q Consensus       428 -~~~~~~L~~L~l~~n~l~  445 (503)
                       +..++.+..+++.+|++.
T Consensus       410 ~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        410 FRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HhhcCCCccEEEeeCCCcc
Confidence             233466777777777765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=3e-18  Score=136.42  Aligned_cols=158  Identities=27%  Similarity=0.432  Sum_probs=137.2

Q ss_pred             cCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCc
Q 040833           12 LGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLN   91 (503)
Q Consensus        12 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~   91 (503)
                      +-++.+++.|.+++|+++ ..|..++.+.+|+.|++++|+|. .+|..++.++.|++|+++-|++. ..|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            346788899999999999 66667899999999999999988 67888999999999999999987 8899999999999


Q ss_pred             EEEccCCCCcc-cCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccc
Q 040833           92 YICVPVNQLQG-SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRN  170 (503)
Q Consensus        92 ~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n  170 (503)
                      .|++.+|.+.+ .+|..+|. +..|+-|++++|.+. .+|..++++++|+-|.+.+|.+...+..++.+..|++|.+.+|
T Consensus       106 vldltynnl~e~~lpgnff~-m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFY-MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhH-HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence            99999988763 57888886 899999999999998 8888999999999999999988877666888888888888888


Q ss_pred             cCCC
Q 040833          171 HLGN  174 (503)
Q Consensus       171 ~l~~  174 (503)
                      +++-
T Consensus       184 rl~v  187 (264)
T KOG0617|consen  184 RLTV  187 (264)
T ss_pred             eeee
Confidence            7763

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=3.4e-18  Score=136.09  Aligned_cols=176  Identities=27%  Similarity=0.439  Sum_probs=90.6

Q ss_pred             CCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEe
Q 040833          287 TLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAID  366 (503)
Q Consensus       287 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~  366 (503)
                      ..+..|.++.|.++ ..|..++.+.+|+.|++.+|++. .+|..++.++++ +.|+++-|.+. ..|..|+.++.|+.||
T Consensus        33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~kl-r~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKL-RILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhh-hheecchhhhh-cCccccCCCchhhhhh
Confidence            33444444555444 23333444555555555555554 445555555555 45555555444 4455555555555555


Q ss_pred             CCCCcccc-cCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCc
Q 040833          367 ISENKLSG-QIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE  445 (503)
Q Consensus       367 l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  445 (503)
                      +++|++.+ ..|..|-.+..|+-|++++|.+. .+|..++++.+|+.|.+++|.+. ..|..++.++.|++|.+.+|+++
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence            55555543 34444444555555555555554 55555555566666666665555 44555555556666666666655


Q ss_pred             ccCCCCCccCC---CCceeccCCCCC
Q 040833          446 GEVPIKGVFSN---SSAISIDGNDNL  468 (503)
Q Consensus       446 ~~~~~~~~~~~---l~~l~~~~n~~~  468 (503)
                      -.+|..+.+.-   -..+.+..|||.
T Consensus       187 vlppel~~l~l~~~k~v~r~E~NPwv  212 (264)
T KOG0617|consen  187 VLPPELANLDLVGNKQVMRMEENPWV  212 (264)
T ss_pred             ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence            44443332221   123445566665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.28  E-value=5.3e-13  Score=118.89  Aligned_cols=239  Identities=20%  Similarity=0.247  Sum_probs=138.6

Q ss_pred             ccccCCCCCCEEECcCCcccccCc----hhHhhccccCcEEEeeccccc---cccc-------hhccCCCCCcEEEccCC
Q 040833          184 NSLVNASRLELLQISDNNFGGMLP----EAVGNLSTRLRILIVGNNQLF---GNIP-------SGLRNLVNLEFLHLGGN  249 (503)
Q Consensus       184 ~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~---~~~~-------~~~~~~~~L~~L~ls~n  249 (503)
                      ..+.....++.+++++|.+...-.    ..+.+.+ .|+..++++-...   ..+|       ..+..+++|++|+||+|
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~-~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKK-ELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcc-cceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            344556778888888887764433    3344443 5666666654211   1122       22345567777777777


Q ss_pred             cccccCCc----cccCCCCCCEEEccCCcccccCCc-------------cccCCCCCCEEEccCCcCcccC----Ccccc
Q 040833          250 QFTGRIPG----SIVDLYKLQRLALEGNKFWGEIPS-------------SIGNLTLLITLNFEENMLEGSI----PSSLG  308 (503)
Q Consensus       250 ~~~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~~-------------~~~~~~~L~~L~l~~n~~~~~~----~~~~~  308 (503)
                      .+....+.    .+..+..|++|.+.+|.+......             ....-+.|+++...+|.+....    ...|.
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~  182 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ  182 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence            65532222    234456677777777765422111             1223345555555555554221    12234


Q ss_pred             CCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccc----cCCccccCCC
Q 040833          309 KCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSG----QIPSSIGSCT  384 (503)
Q Consensus       309 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~~~  384 (503)
                      .++.|+++.+..|.|...   ..                  ......|..+++|+.|||.+|.++.    .+...++.++
T Consensus       183 ~~~~leevr~~qN~I~~e---G~------------------~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~  241 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPE---GV------------------TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP  241 (382)
T ss_pred             hccccceEEEecccccCc---hh------------------HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence            445555555555544311   00                  0122346678888888888888763    3445677788


Q ss_pred             CCCEEECCCCcCcccCchhc-----cCCCCCCEEeCCCCccccc----cCccCcCCCCCCeeecCCCcC
Q 040833          385 RLEQLVMNGNFFQGNIPSSL-----SSLRGIENLDLSRNNLSGR----IPKYLENFPFLQNLNLSFNHF  444 (503)
Q Consensus       385 ~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l  444 (503)
                      +|++|++++|.+.......|     ...|+|+.|.+.+|.|+..    +.......|.|+.|++++|++
T Consensus       242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            88888888888775544333     3468888888888888632    223345578888888888888

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.25  E-value=3.5e-13  Score=120.02  Aligned_cols=184  Identities=17%  Similarity=0.205  Sum_probs=115.3

Q ss_pred             cCcEEEeeccccccccc----hhccCCCCCcEEEccCCccccc-------------CCccccCCCCCCEEEccCCccccc
Q 040833          216 RLRILIVGNNQLFGNIP----SGLRNLVNLEFLHLGGNQFTGR-------------IPGSIVDLYKLQRLALEGNKFWGE  278 (503)
Q Consensus       216 ~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~ls~n~~~~~-------------~~~~~~~~~~L~~L~l~~n~~~~~  278 (503)
                      +|++++|++|-+....+    ..+..+..|++|.+.+|.+...             ........++|+.+...+|++.+.
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence            55555555554432222    2345688999999999987521             122345668999999999998643


Q ss_pred             C----CccccCCCCCCEEEccCCcCcccC----CccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCcc
Q 040833          279 I----PSSIGNLTLLITLNFEENMLEGSI----PSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNG  350 (503)
Q Consensus       279 ~----~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~  350 (503)
                      .    ...|...+.|+++.++.|.|....    ..++..+++|+.||+++|.++......+                   
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L-------------------  233 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL-------------------  233 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH-------------------
Confidence            2    235677899999999999986432    3457889999999999998873322211                   


Q ss_pred             CCCcchhcCCCCCeEeCCCCcccccCCccc-----cCCCCCCEEECCCCcCccc----CchhccCCCCCCEEeCCCCcc
Q 040833          351 PLPSNFGILKNLGAIDISENKLSGQIPSSI-----GSCTRLEQLVMNGNFFQGN----IPSSLSSLRGIENLDLSRNNL  420 (503)
Q Consensus       351 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l  420 (503)
                        ...++.++.|+.|++++|.+......+|     ...++|++|.+.+|.++..    +..+....+.|+.|+|++|++
T Consensus       234 --akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  234 --AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             --HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence              1223344555666666665543222211     2346677777777766632    222334456777777777776

>PLN03150 hypothetical protein; Provisional

Probab=99.23  E-value=1.8e-11  Score=125.38  Aligned_cols=118  Identities=34%  Similarity=0.591  Sum_probs=100.5

Q ss_pred             CCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecC
Q 040833          361 NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLS  440 (503)
Q Consensus       361 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  440 (503)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36789999999998899999999999999999999998999999999999999999999998899999999999999999


Q ss_pred             CCcCcccCCCC--CccCCCCceeccCCCCCcccCCCCCCCCCC
Q 040833          441 FNHFEGEVPIK--GVFSNSSAISIDGNDNLCGGISELHLSTCS  481 (503)
Q Consensus       441 ~n~l~~~~~~~--~~~~~l~~l~~~~n~~~c~~~~~~~ls~~~  481 (503)
                      +|.+++..|..  ..+.++..+++.+|+.+|+.. .  +..|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p-~--l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP-G--LRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCC-C--CCCCc
Confidence            99999888742  223456678999999999743 2  34563

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.23  E-value=3.5e-12  Score=111.29  Aligned_cols=134  Identities=30%  Similarity=0.317  Sum_probs=89.8

Q ss_pred             CCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCE
Q 040833          309 KCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQ  388 (503)
Q Consensus       309 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  388 (503)
                      .+..|+++|+++|.|+ .+.+.+.-.|.+ +.|++++|.|...  +.++.+++|+.||+++|.++ ....+=..+-+.++
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pki-r~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKL-RRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT  356 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccce-eEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence            3456778888888776 555555555666 7788888877633  23666777888888887776 33334445667777


Q ss_pred             EECCCCcCcccCchhccCCCCCCEEeCCCCcccccc-CccCcCCCCCCeeecCCCcCcccCC
Q 040833          389 LVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRI-PKYLENFPFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       389 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~  449 (503)
                      |.|++|.+.+  ...+.++-+|..||+++|+|.... ...++++|-|+.+.+.+|++.+.+.
T Consensus       357 L~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  357 LKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             eehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            8888777652  245566677788888888776432 2346777888888888888776554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.20  E-value=4.8e-13  Score=126.33  Aligned_cols=171  Identities=31%  Similarity=0.484  Sum_probs=112.7

Q ss_pred             CCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEcc
Q 040833          265 LQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLS  344 (503)
Q Consensus       265 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~  344 (503)
                      -...+++.|++. ..|..++.+-.|+.+.++.|.+. ..+.++..+..|+.++++.|++. .+|..++.++ + +.+.++
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-L-kvli~s  151 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-L-KVLIVS  151 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-c-eeEEEe
Confidence            345566666665 55555666666666666666666 55556666677777777777766 5666555554 2 466677


Q ss_pred             CCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCcccccc
Q 040833          345 QNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRI  424 (503)
Q Consensus       345 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  424 (503)
                      +|+++ .+|..++....|..||.+.|.+. ..|..+..+.+|+.|.++.|.+. .+|..+.. -.|..||+|.|+++ .+
T Consensus       152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~i  226 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YL  226 (722)
T ss_pred             cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-ec
Confidence            77776 55666666667777777777776 55666667777777777777766 44555553 35777777777777 56


Q ss_pred             CccCcCCCCCCeeecCCCcCc
Q 040833          425 PKYLENFPFLQNLNLSFNHFE  445 (503)
Q Consensus       425 ~~~~~~~~~L~~L~l~~n~l~  445 (503)
                      |..|..+..|++|-|.+|+++
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             chhhhhhhhheeeeeccCCCC
Confidence            677777777777777777776

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=2.3e-12  Score=118.13  Aligned_cols=213  Identities=23%  Similarity=0.211  Sum_probs=150.3

Q ss_pred             cCCCCCcEEEccCCcccccCC-ccccCCCCCCEEEccCCcccccC--CccccCCCCCCEEEccCCcCcccCCc-cccCCC
Q 040833          236 RNLVNLEFLHLGGNQFTGRIP-GSIVDLYKLQRLALEGNKFWGEI--PSSIGNLTLLITLNFEENMLEGSIPS-SLGKCQ  311 (503)
Q Consensus       236 ~~~~~L~~L~ls~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~  311 (503)
                      +++.+|+++.+.++.+..... .....++.++.|+++.|-+....  ......+|+|+.|+++.|.+..-... .-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            567889999999888763221 35677899999999999876432  23456799999999999987632221 223578


Q ss_pred             CCCEEECcCCcCccc-CCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccC-CccccCCCCCCEE
Q 040833          312 NLISLNLSNNNLSGT-IPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQI-PSSIGSCTRLEQL  389 (503)
Q Consensus       312 ~L~~L~l~~n~~~~~-~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L  389 (503)
                      +|+.|.++.|.++.. +......+|++ +.|++..|............+..|++|+|++|++-+.. ......++.|..|
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl-~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSL-EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcH-HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            999999999988732 22344466777 88999988532233334455678999999999876322 1355678889999


Q ss_pred             ECCCCcCccc-Cchh-----ccCCCCCCEEeCCCCccccc-cCccCcCCCCCCeeecCCCcCcccCC
Q 040833          390 VMNGNFFQGN-IPSS-----LSSLRGIENLDLSRNNLSGR-IPKYLENFPFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       390 ~L~~n~l~~~-~~~~-----~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~  449 (503)
                      +++.|.+.++ .|+.     ....++|++|++++|++.+- ....+..+++|+.|.+..|++.....
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~  343 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD  343 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccccc
Confidence            9999988754 2222     35678999999999998632 12335667888999999998876443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=3.4e-12  Score=117.01  Aligned_cols=209  Identities=22%  Similarity=0.208  Sum_probs=93.0

Q ss_pred             CCCCCCEEECCCCccccCCC-ccccCCCCCCEEEcccceeeeeCC--ccccCCCCCcEEEccCCCCcccCchhhhcCCCC
Q 040833           38 NLSSLEALSASANQFVGQIP-ETLSQLKRMLYLLLGVNKLSGEIP--FSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPN  114 (503)
Q Consensus        38 ~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  114 (503)
                      ++.+|+...+.++.+..... +....+++++.|||++|-+....+  .....+++|+.|+++.|++..-........++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            34445555555444431111 234445555555555554432111  123344555555555555432222222223455


Q ss_pred             CCEEEccCCccccc-CCccccCCCCCCEEecccCcC-cccCCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCC
Q 040833          115 LEVLNLCRNQFTGP-IPASISNASNLMRLVIAKNGF-SGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRL  192 (503)
Q Consensus       115 L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L  192 (503)
                      |+.|.++.|+++.. +......+|+|+.|++.+|.. .........+..|++|++++|.+...     ........++.|
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~-----~~~~~~~~l~~L  273 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF-----DQGYKVGTLPGL  273 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc-----ccccccccccch
Confidence            55555555555421 111233455555555555531 11111133444555555555554321     112233444555


Q ss_pred             CEEECcCCccccc-Cchh-----HhhccccCcEEEeecccccc-ccchhccCCCCCcEEEccCCccc
Q 040833          193 ELLQISDNNFGGM-LPEA-----VGNLSTRLRILIVGNNQLFG-NIPSGLRNLVNLEFLHLGGNQFT  252 (503)
Q Consensus       193 ~~L~l~~~~~~~~-~~~~-----~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ls~n~~~  252 (503)
                      ..|+++.+.+... .|.+     .... +++++|++..|.+.+ .....+..+++|+.|.+..|.+.
T Consensus       274 ~~Lnls~tgi~si~~~d~~s~~kt~~f-~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  274 NQLNLSSTGIASIAEPDVESLDKTHTF-PKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhhhccccCcchhcCCCccchhhhccc-ccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            5555555554432 1111     1122 367777777776632 11123445566677777777665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.18  E-value=8.9e-12  Score=108.80  Aligned_cols=198  Identities=20%  Similarity=0.194  Sum_probs=121.4

Q ss_pred             cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccC-CcccccCCccccCCCCCCEEEc
Q 040833          216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEG-NKFWGEIPSSIGNLTLLITLNF  294 (503)
Q Consensus       216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l  294 (503)
                      +|+.+.++.|.-..+. +....-|.|+++.+.+..++. .+. +.....+.....+. ....+..-......+.|+++|+
T Consensus       215 ~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~~~-~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDL  291 (490)
T KOG1259|consen  215 NLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTIQD-VPS-LLPETILADPSGSEPSTSNGSALVSADTWQELTELDL  291 (490)
T ss_pred             hhheeeeeccchhhee-ceeecCchhheeeeecccccc-ccc-ccchhhhcCccCCCCCccCCceEEecchHhhhhhccc
Confidence            6677777766533211 111223566777666655441 111 11111111111111 1111222223445677888888


Q ss_pred             cCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccc
Q 040833          295 EENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSG  374 (503)
Q Consensus       295 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  374 (503)
                      +.|.|+ .+.+.+.-.|.++.|++++|.+... . .+..++++ +.||+++|.++. ..+.-..+-++++|.+++|.+.+
T Consensus       292 S~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-~-nLa~L~~L-~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~  366 (490)
T KOG1259|consen  292 SGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-Q-NLAELPQL-QLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIET  366 (490)
T ss_pred             cccchh-hhhhhhhhccceeEEeccccceeee-h-hhhhcccc-eEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhh
Confidence            888887 4445566678888888888888732 2 26667777 788888888873 32323346788899999998863


Q ss_pred             cCCccccCCCCCCEEECCCCcCccc-CchhccCCCCCCEEeCCCCccccc
Q 040833          375 QIPSSIGSCTRLEQLVMNGNFFQGN-IPSSLSSLRGIENLDLSRNNLSGR  423 (503)
Q Consensus       375 ~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~  423 (503)
                      .  ..+..+.+|..||+++|+|... -...++++|.|+.+.|.+|++...
T Consensus       367 L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  367 L--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             h--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            2  4577788899999999988732 124467889999999999988743

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.17  E-value=4.7e-11  Score=116.93  Aligned_cols=198  Identities=40%  Similarity=0.492  Sum_probs=113.2

Q ss_pred             EEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCC-CCCEEEccCCcccccCCccccCCCCCCEEEccCC
Q 040833          219 ILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLY-KLQRLALEGNKFWGEIPSSIGNLTLLITLNFEEN  297 (503)
Q Consensus       219 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  297 (503)
                      .+....+.+... ...+...+.++.|++.++.++ .++....... +|+.|++++|.+. ..+..+..++.|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            455555554211 122344466777777777776 3343444443 6777777777766 33345566777777777777


Q ss_pred             cCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCC
Q 040833          298 MLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIP  377 (503)
Q Consensus       298 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  377 (503)
                      ++... +......+.|+.|++++|++. .+|........+ +++.+++|.+. ..+..+..+.++..+.+.+|++. ..+
T Consensus       174 ~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L-~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~  248 (394)
T COG4886         174 DLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSAL-EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP  248 (394)
T ss_pred             hhhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhh-hhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence            77633 322335667777777777776 445443233334 66666666433 23344555666666666666665 224


Q ss_pred             ccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCc
Q 040833          378 SSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPK  426 (503)
Q Consensus       378 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  426 (503)
                      ..+..++++++|++++|.++... . +....+++.|++++|.+....+.
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~~i~-~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQISSIS-S-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             chhccccccceeccccccccccc-c-ccccCccCEEeccCccccccchh
Confidence            45556666666666666666332 2 55666666666666666644443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.16  E-value=2.2e-11  Score=101.92  Aligned_cols=104  Identities=26%  Similarity=0.294  Sum_probs=29.9

Q ss_pred             ceeEccCCCCccCCCcchh-cCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCC
Q 040833          339 IYLDLSQNQLNGPLPSNFG-ILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSR  417 (503)
Q Consensus       339 ~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  417 (503)
                      ++|+|++|.|+...  .+. .+.+|+.|++++|.++..  +.+..++.|++|++++|.++...+.....+++|++|++++
T Consensus        22 ~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~   97 (175)
T PF14580_consen   22 RELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN   97 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred             cccccccccccccc--chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence            45555555554321  222 345666666666666532  2355566666666666666633222223456666666666


Q ss_pred             Cccccc-cCccCcCCCCCCeeecCCCcCcc
Q 040833          418 NNLSGR-IPKYLENFPFLQNLNLSFNHFEG  446 (503)
Q Consensus       418 n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~  446 (503)
                      |+|.+. ....+..+++|+.|++.+||+..
T Consensus        98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   98 NKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             S---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            666533 12344556666666666666653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.12  E-value=5.2e-11  Score=99.68  Aligned_cols=123  Identities=24%  Similarity=0.279  Sum_probs=32.0

Q ss_pred             CCCEEECCCCccccCCCcccc-CCCCCCEEEcccceeeeeCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEE
Q 040833           41 SLEALSASANQFVGQIPETLS-QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLN  119 (503)
Q Consensus        41 ~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  119 (503)
                      .++.|++.+|.|+.+  +.+. .+.+|+.|++++|.++. +. .+..++.|++|++++|.+. .+...+...+|+|++|+
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence            444445544444422  1232 34444555555554442 21 3444455555555555554 33333322245555555


Q ss_pred             ccCCccccc-CCccccCCCCCCEEecccCcCcccCCC----ccCCCCCcEEEcc
Q 040833          120 LCRNQFTGP-IPASISNASNLMRLVIAKNGFSGKVPS----LKILHKLEWVGIS  168 (503)
Q Consensus       120 l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~----l~~l~~L~~L~l~  168 (503)
                      +++|++... .-..++.+++|+.|++.+|.+......    +..+++|+.||-.
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            555555421 112344555555555555555433222    4556666666543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.11  E-value=1.5e-10  Score=113.43  Aligned_cols=200  Identities=30%  Similarity=0.447  Sum_probs=118.0

Q ss_pred             EEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCC-CCcEEEccCCcccccCCccccCCCCCCEEEccC
Q 040833          194 LLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLV-NLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEG  272 (503)
Q Consensus       194 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~  272 (503)
                      .++...+.+..... .+... +.++.+.+.++.+.. ++....... +|+.|++++|.+. ..+..+..++.|+.|+++.
T Consensus        97 ~l~~~~~~~~~~~~-~~~~~-~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSNIS-ELLEL-TNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccCch-hhhcc-cceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            45666555532221 22222 256777777777663 333344443 6777777777776 3334566777777777777


Q ss_pred             CcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCC
Q 040833          273 NKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPL  352 (503)
Q Consensus       273 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~  352 (503)
                      |.+.+ .+......+.|+.|++++|.+.. .+........|+++.+++|++. ..+..+..+..+ ..+.+.+|++.. .
T Consensus       173 N~l~~-l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l-~~l~l~~n~~~~-~  247 (394)
T COG4886         173 NDLSD-LPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL-SGLELSNNKLED-L  247 (394)
T ss_pred             chhhh-hhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc-cccccCCceeee-c
Confidence            77763 33333356777777777777763 3333334455777777777543 344555555555 556667776653 2


Q ss_pred             CcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhc
Q 040833          353 PSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSL  404 (503)
Q Consensus       353 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  404 (503)
                      +..+..++++++|++++|.++....  +....+++.|++++|.+....+...
T Consensus       248 ~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         248 PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence            4455666677777777777763322  6666777777777777765544443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.09  E-value=3.4e-12  Score=120.70  Aligned_cols=192  Identities=29%  Similarity=0.385  Sum_probs=151.5

Q ss_pred             EEEcccCcCCCCCCccc--CCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEccC
Q 040833           20 ILAMHRNNLSGEIPSSF--GNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPV   97 (503)
Q Consensus        20 ~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~   97 (503)
                      +|.|++-+++ .+|..-  ..+.-....|++.|++. .+|..+..+..|+.+.+++|.+. .+|..++++..|.+++++.
T Consensus        54 ~l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~  130 (722)
T KOG0532|consen   54 RLLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSS  130 (722)
T ss_pred             ccccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhcc
Confidence            3556666666 555332  33455567899999988 77888888889999999999987 7888999999999999999


Q ss_pred             CCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCCCC
Q 040833           98 NQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKK  177 (503)
Q Consensus        98 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  177 (503)
                      |++. .+|..+.  .--|+.|.+++|+++ .+|..++..++|.+|+.+.|.+....+.++.+.+|+.|++..|++..   
T Consensus       131 NqlS-~lp~~lC--~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~---  203 (722)
T KOG0532|consen  131 NQLS-HLPDGLC--DLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED---  203 (722)
T ss_pred             chhh-cCChhhh--cCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh---
Confidence            9997 8888876  347999999999998 88888998899999999999998877778888888888888888763   


Q ss_pred             CCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccc
Q 040833          178 DDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLF  228 (503)
Q Consensus       178 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  228 (503)
                          ++..+..+ .|..||++.|++. .+|-.|.++. .|++|.|.+|.+.
T Consensus       204 ----lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~-~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  204 ----LPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMR-HLQVLQLENNPLQ  247 (722)
T ss_pred             ----CCHHHhCC-ceeeeecccCcee-ecchhhhhhh-hheeeeeccCCCC
Confidence                34444433 3777788877777 6677777774 7777777777765

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.06  E-value=8.3e-11  Score=123.04  Aligned_cols=131  Identities=25%  Similarity=0.285  Sum_probs=81.9

Q ss_pred             CCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCc--cccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCc
Q 040833           14 SLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQ--FVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLN   91 (503)
Q Consensus        14 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~   91 (503)
                      +....|...+.+|.+. ..+... .++.|++|-+.+|.  +....++.|..++.|+.|||++|.-.+.+|..++++-+|+
T Consensus       521 ~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             chhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            3355666666666665 334333 34567777766664  4434344466677777777776665556777777777777


Q ss_pred             EEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCc
Q 040833           92 YICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNG  148 (503)
Q Consensus        92 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  148 (503)
                      +|+++++.+. .+|..+.. +..|.+|++..+......+.....+++|+.|.+....
T Consensus       599 yL~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  599 YLDLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            7777777766 67777665 6777777776665443445555557777777665544

>PLN03150 hypothetical protein; Provisional

Probab=99.04  E-value=5.4e-10  Score=114.53  Aligned_cols=112  Identities=36%  Similarity=0.517  Sum_probs=102.1

Q ss_pred             cceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCC
Q 040833          338 SIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSR  417 (503)
Q Consensus       338 ~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  417 (503)
                      ++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|+.+..+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCccCcCC-CCCCeeecCCCcCcccCC
Q 040833          418 NNLSGRIPKYLENF-PFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       418 n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~  449 (503)
                      |++++..|..+... .++..+++.+|+..|-.|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCC
Confidence            99999999887653 567899999998776544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.01  E-value=1.4e-10  Score=121.39  Aligned_cols=84  Identities=25%  Similarity=0.381  Sum_probs=38.6

Q ss_pred             ccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCCCC
Q 040833           84 IYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKL  162 (503)
Q Consensus        84 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L  162 (503)
                      |..++.|+.|++++|.-.+.+|..+.. +-+|++|+++++.+. .+|..+.++..|.+|++..+......+. ...+.+|
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L  644 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL  644 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence            444455555555544333344444443 445555555554444 4444455555555555444433333333 2334445


Q ss_pred             cEEEccc
Q 040833          163 EWVGISR  169 (503)
Q Consensus       163 ~~L~l~~  169 (503)
                      ++|.+..
T Consensus       645 r~L~l~~  651 (889)
T KOG4658|consen  645 RVLRLPR  651 (889)
T ss_pred             cEEEeec
Confidence            5544433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.01  E-value=2.3e-10  Score=78.74  Aligned_cols=61  Identities=39%  Similarity=0.536  Sum_probs=37.9

Q ss_pred             CCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcC
Q 040833          384 TRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHF  444 (503)
Q Consensus       384 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  444 (503)
                      ++|++|++++|.++...++.|.++++|++|++++|.++...+..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3556666666666655555666666666666666666655666666666666666666653

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.96  E-value=4.7e-10  Score=77.16  Aligned_cols=61  Identities=38%  Similarity=0.528  Sum_probs=51.0

Q ss_pred             CCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCcc
Q 040833          360 KNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL  420 (503)
Q Consensus       360 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  420 (503)
                      ++|++|++++|.++...+..|.++++|++|++++|.++...+.+|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4678888888888877777888888888888888888877778888888888888888875

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.76  E-value=2.6e-10  Score=111.17  Aligned_cols=182  Identities=21%  Similarity=0.267  Sum_probs=119.6

Q ss_pred             CccccCCCCCCEEEccCCcCcccCCccccCC-CCCCEEECcCCcCc---ccCCc---ch---hccccccceeEccCCCCc
Q 040833          280 PSSIGNLTLLITLNFEENMLEGSIPSSLGKC-QNLISLNLSNNNLS---GTIPT---EV---IGLSSLSIYLDLSQNQLN  349 (503)
Q Consensus       280 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~~~---~~~~~---~~---~~~~~l~~~L~l~~n~l~  349 (503)
                      |..+..+.+|+.|.+.+|.+...  ..+..+ ..|++|...+. +.   ..+..   .+   ..+..+ ...+.++|.+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~~Wn~L-~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSPVWNKL-ATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccchhhhhH-hhhhcchhhHH
Confidence            45566778899999999887631  111111 13333333221 11   00000   00   112233 56777888877


Q ss_pred             cCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCc
Q 040833          350 GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLE  429 (503)
Q Consensus       350 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  429 (503)
                       .....+.-++.++.|+|+.|+++..  ..+..|+.|++|||++|.+....--...+|. |+.|++++|-++..  ..+.
T Consensus       178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie  251 (1096)
T KOG1859|consen  178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIE  251 (1096)
T ss_pred             -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHH
Confidence             5556677788899999999988743  2677788999999999988843222233454 89999999988733  4577


Q ss_pred             CCCCCCeeecCCCcCcccC--CCCCccCCCCceeccCCCCCccc
Q 040833          430 NFPFLQNLNLSFNHFEGEV--PIKGVFSNSSAISIDGNDNLCGG  471 (503)
Q Consensus       430 ~~~~L~~L~l~~n~l~~~~--~~~~~~~~l~~l~~~~n~~~c~~  471 (503)
                      ++.+|+.||+++|-+.+-.  ...+.+..|+.|++.|||..|..
T Consensus       252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            8889999999999887643  23566788889999999988854

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.75  E-value=1.4e-09  Score=106.55  Aligned_cols=244  Identities=24%  Similarity=0.258  Sum_probs=135.6

Q ss_pred             CCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEE
Q 040833          189 ASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRL  268 (503)
Q Consensus       189 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L  268 (503)
                      +..++.+.+..+.+.. ....+..+ .+++.+++.+|.+..+. ..+..+++|++|++++|.|+..  ..+..++.|+.|
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~-~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKL-KSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccc-cceeeeeccccchhhcc-cchhhhhcchheeccccccccc--cchhhccchhhh
Confidence            3445555566665553 11122333 36777777777766332 2255667777777777777643  234455567777


Q ss_pred             EccCCcccccCCccccCCCCCCEEEccCCcCcccCC-ccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCC
Q 040833          269 ALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIP-SSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQ  347 (503)
Q Consensus       269 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~  347 (503)
                      ++++|.+...  ..+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+...  ..+.....+ ..+++..|.
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l-~~~~l~~n~  219 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKL-VLLSLLDNK  219 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHH-HHhhccccc
Confidence            7777776633  334456777777777777664433 1 35566777777777766522  112222222 334566666


Q ss_pred             CccCCCcchhcCCC--CCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccc--
Q 040833          348 LNGPLPSNFGILKN--LGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGR--  423 (503)
Q Consensus       348 l~~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--  423 (503)
                      +....+  +..+..  |+.+++++|++. ..+..+..+..+..|++.+|.+...  ..+...+.+..+..+.+.+...  
T Consensus       220 i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  294 (414)
T KOG0531|consen  220 ISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEA  294 (414)
T ss_pred             ceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhh
Confidence            653211  112222  667777777776 3334555666777777777766532  2334455666666666665422  


Q ss_pred             -cCcc-CcCCCCCCeeecCCCcCcccC
Q 040833          424 -IPKY-LENFPFLQNLNLSFNHFEGEV  448 (503)
Q Consensus       424 -~~~~-~~~~~~L~~L~l~~n~l~~~~  448 (503)
                       .... ....+.++.+.+..|+.....
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (414)
T KOG0531|consen  295 ISQEYITSAAPTLVTLTLELNPIRKIS  321 (414)
T ss_pred             hhccccccccccccccccccCcccccc
Confidence             1111 344566777777777766544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.67  E-value=2.7e-09  Score=104.65  Aligned_cols=243  Identities=25%  Similarity=0.292  Sum_probs=125.2

Q ss_pred             CCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCC
Q 040833          159 LHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNL  238 (503)
Q Consensus       159 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  238 (503)
                      +..++.+.+..|.+..       ....+..+.+|+.+++.+|.+..... .+..++ +|++|++++|.|....  .+..+
T Consensus        71 l~~l~~l~l~~n~i~~-------~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~-~L~~L~ls~N~I~~i~--~l~~l  139 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-------ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLV-NLQVLDLSFNKITKLE--GLSTL  139 (414)
T ss_pred             hHhHHhhccchhhhhh-------hhcccccccceeeeeccccchhhccc-chhhhh-cchheecccccccccc--chhhc
Confidence            4445555555555542       22334455666677777666653322 133343 6677777777665432  24445


Q ss_pred             CCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCC-ccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEE
Q 040833          239 VNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIP-SSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLN  317 (503)
Q Consensus       239 ~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  317 (503)
                      +.|+.|++++|.+...  ..+..++.|+.+++++|.+....+ . ...+.+++.+.+.+|.+...  ..+..+..+..++
T Consensus       140 ~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~  214 (414)
T KOG0531|consen  140 TLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLS  214 (414)
T ss_pred             cchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhh
Confidence            5566777777766632  234446666677777776664433 1 34566666666666666522  1233334444446


Q ss_pred             CcCCcCcccCCcchhccc--cccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCc
Q 040833          318 LSNNNLSGTIPTEVIGLS--SLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF  395 (503)
Q Consensus       318 l~~n~~~~~~~~~~~~~~--~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~  395 (503)
                      +..|.+...-+.  ....  .+ +.+++++|.+... +..+..+..+..|++.++++...  ..+...+.+..+....+.
T Consensus       215 l~~n~i~~~~~l--~~~~~~~L-~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~  288 (414)
T KOG0531|consen  215 LLDNKISKLEGL--NELVMLHL-RELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNK  288 (414)
T ss_pred             cccccceeccCc--ccchhHHH-HHHhcccCccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCcch
Confidence            666655522111  1111  13 5666666666522 23344556666666666666422  123334455555555555


Q ss_pred             Cccc---Cchh-ccCCCCCCEEeCCCCccccc
Q 040833          396 FQGN---IPSS-LSSLRGIENLDLSRNNLSGR  423 (503)
Q Consensus       396 l~~~---~~~~-~~~l~~L~~L~L~~n~l~~~  423 (503)
                      +...   .... ....+.++.+.+..|.+...
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (414)
T KOG0531|consen  289 LALSEAISQEYITSAAPTLVTLTLELNPIRKI  320 (414)
T ss_pred             hcchhhhhccccccccccccccccccCccccc
Confidence            4421   1111 33445666666666666543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=5.1e-10  Score=97.91  Aligned_cols=179  Identities=19%  Similarity=0.158  Sum_probs=121.9

Q ss_pred             CCCEEEccCCcccc-cCCccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEEEccccc-CCCCCCCCccccccccCCC
Q 040833          114 NLEVLNLCRNQFTG-PIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNH-LGNGKKDDLEFVNSLVNAS  190 (503)
Q Consensus       114 ~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~~~  190 (503)
                      +|+++|++...++. ..-..+..|.+|+.|.+.++++.+.+.. +..-.+|+.++++.+. ++.     ...---+.+|+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~-----n~~~ll~~scs  260 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE-----NALQLLLSSCS  260 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch-----hHHHHHHHhhh
Confidence            58888888777652 2233456778888888888877665544 6777788888887753 221     12233467788


Q ss_pred             CCCEEECcCCcccccC-chhHhhccccCcEEEeeccccc---cccchhccCCCCCcEEEccCCc-ccccCCccccCCCCC
Q 040833          191 RLELLQISDNNFGGML-PEAVGNLSTRLRILIVGNNQLF---GNIPSGLRNLVNLEFLHLGGNQ-FTGRIPGSIVDLYKL  265 (503)
Q Consensus       191 ~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~ls~n~-~~~~~~~~~~~~~~L  265 (503)
                      .|..|++++|...... ......+..+++.|+++++.-.   ..+..-...+++|.+||++++. ++......|..++.|
T Consensus       261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L  340 (419)
T KOG2120|consen  261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL  340 (419)
T ss_pred             hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence            8889999988765432 2234455568999999988532   1122234678999999999885 443344567788999


Q ss_pred             CEEEccCCcccccCCcc---ccCCCCCCEEEccCCcC
Q 040833          266 QRLALEGNKFWGEIPSS---IGNLTLLITLNFEENML  299 (503)
Q Consensus       266 ~~L~l~~n~~~~~~~~~---~~~~~~L~~L~l~~n~~  299 (503)
                      ++|.++.|..  +.|..   +...|.|.+|++.++--
T Consensus       341 ~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  341 QHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             eeeehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence            9999999974  44543   56788999999888743

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.61  E-value=4.2e-09  Score=91.02  Aligned_cols=195  Identities=19%  Similarity=0.201  Sum_probs=120.4

Q ss_pred             hhccCCCCCcEEEccCCcccccCCc----cccCCCCCCEEEccCCcccccCCcc-------------ccCCCCCCEEEcc
Q 040833          233 SGLRNLVNLEFLHLGGNQFTGRIPG----SIVDLYKLQRLALEGNKFWGEIPSS-------------IGNLTLLITLNFE  295 (503)
Q Consensus       233 ~~~~~~~~L~~L~ls~n~~~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~~~-------------~~~~~~L~~L~l~  295 (503)
                      ..+..||+|+.+++|.|.+....|.    .++....|.+|.+++|.+..+....             ...-|.|+++.+.
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            3456788888888888877644433    3456678888888888765332211             1335678888887


Q ss_pred             CCcCcccC----CccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCc
Q 040833          296 ENMLEGSI----PSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENK  371 (503)
Q Consensus       296 ~n~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  371 (503)
                      +|++..-.    ...+.....|+++.+..|.|.   |..+..+                 ....+..+.+|+.||+.+|.
T Consensus       166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L-----------------~~~gl~y~~~LevLDlqDNt  225 (388)
T COG5238         166 RNRLENGSKELSAALLESHENLKEVKIQQNGIR---PEGVTML-----------------AFLGLFYSHSLEVLDLQDNT  225 (388)
T ss_pred             cchhccCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHH-----------------HHHHHHHhCcceeeeccccc
Confidence            77765221    112334467777777777665   2211111                 11123456788888888887


Q ss_pred             ccc----cCCccccCCCCCCEEECCCCcCcccCchh----cc--CCCCCCEEeCCCCccccccCcc-----C--cCCCCC
Q 040833          372 LSG----QIPSSIGSCTRLEQLVMNGNFFQGNIPSS----LS--SLRGIENLDLSRNNLSGRIPKY-----L--ENFPFL  434 (503)
Q Consensus       372 l~~----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~----~~--~l~~L~~L~L~~n~l~~~~~~~-----~--~~~~~L  434 (503)
                      ++.    ....+++.++.|+.|.+.+|-+.......    |.  ..|+|..|-..+|.+.+-....     +  ..+|-|
T Consensus       226 ft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L  305 (388)
T COG5238         226 FTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLL  305 (388)
T ss_pred             hhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHH
Confidence            763    23445667777888888888776443332    21  3478888888888764322111     1  356778


Q ss_pred             CeeecCCCcCccc
Q 040833          435 QNLNLSFNHFEGE  447 (503)
Q Consensus       435 ~~L~l~~n~l~~~  447 (503)
                      ..+.+.+|++...
T Consensus       306 ~~le~ngNr~~E~  318 (388)
T COG5238         306 VDLERNGNRIKEL  318 (388)
T ss_pred             HHHHHccCcchhH
Confidence            8888888888743

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.61  E-value=1.4e-09  Score=106.15  Aligned_cols=197  Identities=25%  Similarity=0.223  Sum_probs=133.0

Q ss_pred             CCCcEEEccCCcccccC-CccccCCCCCCEEEccCCcccccCCccccCC-CCCCEEEccCCcCc---c-------cCCcc
Q 040833          239 VNLEFLHLGGNQFTGRI-PGSIVDLYKLQRLALEGNKFWGEIPSSIGNL-TLLITLNFEENMLE---G-------SIPSS  306 (503)
Q Consensus       239 ~~L~~L~ls~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~~~---~-------~~~~~  306 (503)
                      ++++.|.+-...-.+.. |-.+..+..|+.|.+.++.+...  ..+..+ ..|++|...+ .+.   .       .+..+
T Consensus        84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns  160 (1096)
T KOG1859|consen   84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNS  160 (1096)
T ss_pred             hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccc
Confidence            44444544433322222 55667788999999999988631  222211 2455553332 111   0       11111


Q ss_pred             ccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCC
Q 040833          307 LGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRL  386 (503)
Q Consensus       307 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  386 (503)
                      + .+..|...+++.|.+. .....+.-++.+ +.|+|++|++++..  .+.+++.|++|||++|.+....-....+|. |
T Consensus       161 ~-~Wn~L~~a~fsyN~L~-~mD~SLqll~al-e~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L  234 (1096)
T KOG1859|consen  161 P-VWNKLATASFSYNRLV-LMDESLQLLPAL-ESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-L  234 (1096)
T ss_pred             h-hhhhHhhhhcchhhHH-hHHHHHHHHHHh-hhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-h
Confidence            1 1346788889999887 555666666666 89999999998553  788999999999999999843333444555 9


Q ss_pred             CEEECCCCcCcccCchhccCCCCCCEEeCCCCccccc-cCccCcCCCCCCeeecCCCcCcc
Q 040833          387 EQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGR-IPKYLENFPFLQNLNLSFNHFEG  446 (503)
Q Consensus       387 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~  446 (503)
                      +.|.+++|.+++.  ..+.++++|+.||+++|-+.+. ....+..+..|+.|+|.||++=+
T Consensus       235 ~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  235 QLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             eeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            9999999999843  4578899999999999988633 22335567789999999999754

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=9.7e-10  Score=96.17  Aligned_cols=177  Identities=19%  Similarity=0.165  Sum_probs=103.5

Q ss_pred             CCCCEEecccCcCcccCCC--ccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCc-ccccCchhHhhc
Q 040833          137 SNLMRLVIAKNGFSGKVPS--LKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNN-FGGMLPEAVGNL  213 (503)
Q Consensus       137 ~~L~~L~l~~n~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~  213 (503)
                      +.++++|++...++...-.  +..+.+|+.|.+.++.+.+      .+...+....+|+.|+++.+. ++......+..-
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD------~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s  258 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD------PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSS  258 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc------HHHHHHhccccceeeccccccccchhHHHHHHHh
Confidence            3577777777666433222  6667777888887777766      555666666778888887763 332222223333


Q ss_pred             cccCcEEEeeccccccccch-hc-cCCCCCcEEEccCCccc---ccCCccccCCCCCCEEEccCCccccc-CCccccCCC
Q 040833          214 STRLRILIVGNNQLFGNIPS-GL-RNLVNLEFLHLGGNQFT---GRIPGSIVDLYKLQRLALEGNKFWGE-IPSSIGNLT  287 (503)
Q Consensus       214 ~~~L~~L~l~~~~~~~~~~~-~~-~~~~~L~~L~ls~n~~~---~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~  287 (503)
                      .+.|..|+++-|......-. .+ .--++|+.|+++|+.-.   .-+......+++|.+||+++|..... ....|-.++
T Consensus       259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~  338 (419)
T KOG2120|consen  259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN  338 (419)
T ss_pred             hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence            34677777777765432211 11 11256777777776421   01122235677788888877753311 122355677


Q ss_pred             CCCEEEccCCcCcccCCc---cccCCCCCCEEECcCC
Q 040833          288 LLITLNFEENMLEGSIPS---SLGKCQNLISLNLSNN  321 (503)
Q Consensus       288 ~L~~L~l~~n~~~~~~~~---~~~~~~~L~~L~l~~n  321 (503)
                      .|++|.+++|..-  .|.   .+...|+|.+|++.++
T Consensus       339 ~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  339 YLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence            7888888777632  222   3456677888877766

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=4.4e-08  Score=85.99  Aligned_cols=85  Identities=24%  Similarity=0.280  Sum_probs=41.5

Q ss_pred             CCCCCCEEEcccceeee--eCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccC-CccccCCCC
Q 040833           62 QLKRMLYLLLGVNKLSG--EIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPI-PASISNASN  138 (503)
Q Consensus        62 ~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~  138 (503)
                      ..++++.+||.+|.|+.  .+...+.++|.|+.|+++.|++...+. ....+..+|+.|.+.+..+.... ...+..+|.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            34566666666666652  222234556666666666666542221 11113456666666555443221 122334455


Q ss_pred             CCEEecccC
Q 040833          139 LMRLVIAKN  147 (503)
Q Consensus       139 L~~L~l~~n  147 (503)
                      +++|.++.|
T Consensus       148 vtelHmS~N  156 (418)
T KOG2982|consen  148 VTELHMSDN  156 (418)
T ss_pred             hhhhhhccc
Confidence            555555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.32  E-value=5.4e-08  Score=84.35  Aligned_cols=190  Identities=22%  Similarity=0.262  Sum_probs=108.2

Q ss_pred             CCCCCEEecccCcCcccCCC-----ccCCCCCcEEEcccccCCCCCCC----CccccccccCCCCCCEEECcCCcccccC
Q 040833          136 ASNLMRLVIAKNGFSGKVPS-----LKILHKLEWVGISRNHLGNGKKD----DLEFVNSLVNASRLELLQISDNNFGGML  206 (503)
Q Consensus       136 ~~~L~~L~l~~n~~~~~~~~-----l~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~~  206 (503)
                      +..++++++++|.+.+....     +.+.++|+..++++-........    -.-...++..||+|+.+++|.|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            44455555555554332211     44456666666665432211100    0123456777888888888888877666


Q ss_pred             chhHhhc---cccCcEEEeeccccccccch-------------hccCCCCCcEEEccCCccccc----CCccccCCCCCC
Q 040833          207 PEAVGNL---STRLRILIVGNNQLFGNIPS-------------GLRNLVNLEFLHLGGNQFTGR----IPGSIVDLYKLQ  266 (503)
Q Consensus       207 ~~~~~~~---~~~L~~L~l~~~~~~~~~~~-------------~~~~~~~L~~L~ls~n~~~~~----~~~~~~~~~~L~  266 (503)
                      |+.+..+   .+.+++|.+++|++....-.             ...+-|.|+.+....|++..-    ....+..-..|+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            6554432   35788888888876522111             123457788888888876521    111222335777


Q ss_pred             EEEccCCcccccCC-----ccccCCCCCCEEEccCCcCcccC----CccccCCCCCCEEECcCCcCcc
Q 040833          267 RLALEGNKFWGEIP-----SSIGNLTLLITLNFEENMLEGSI----PSSLGKCQNLISLNLSNNNLSG  325 (503)
Q Consensus       267 ~L~l~~n~~~~~~~-----~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~~~~  325 (503)
                      .+.+..|.+.....     ..+..+.+|+.|++.+|.++...    ..++..++.|++|.+.+|-++.
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence            88887777643211     12345677888888887765332    2345556667777777776653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.29  E-value=1e-06  Score=73.23  Aligned_cols=103  Identities=22%  Similarity=0.222  Sum_probs=73.7

Q ss_pred             ceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccC-chhccCCCCCCEEeCCC
Q 040833          339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI-PSSLSSLRGIENLDLSR  417 (503)
Q Consensus       339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~  417 (503)
                      ..+|+++|.+...  ..|..+++|.+|.+++|+|+.+.|..-.-+++|+.|.|.+|.+.... ...+..||+|++|.+-+
T Consensus        45 d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   45 DAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             ceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            6778888877633  45677888888888888888766665566778888888888777431 23456778888888888


Q ss_pred             Cccccc---cCccCcCCCCCCeeecCCCc
Q 040833          418 NNLSGR---IPKYLENFPFLQNLNLSFNH  443 (503)
Q Consensus       418 n~l~~~---~~~~~~~~~~L~~L~l~~n~  443 (503)
                      |++.+.   -.-.+..+|+|+.||..+=.
T Consensus       123 Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  123 NPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             CchhcccCceeEEEEecCcceEeehhhhh
Confidence            888643   11235677888888887654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=3.8e-07  Score=80.28  Aligned_cols=185  Identities=19%  Similarity=0.160  Sum_probs=81.1

Q ss_pred             CCCCCEEEccCCcccc--cCCccccCCCCCCEEecccCcCcccCCCc-cCCCCCcEEEcccccCCCCCCCCccccccccC
Q 040833          112 LPNLEVLNLCRNQFTG--PIPASISNASNLMRLVIAKNGFSGKVPSL-KILHKLEWVGISRNHLGNGKKDDLEFVNSLVN  188 (503)
Q Consensus       112 l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~  188 (503)
                      .+.++.+++.+|.++.  .+...+.++|.|+.|+++.|.+...+..+ ....+|+.+.+.+..+....     .-..+..
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~-----~~s~l~~  144 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQ-----STSSLDD  144 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhh-----hhhhhhc
Confidence            3444444444444431  12222334444444444444444333332 23444444444444333211     1112233


Q ss_pred             CCCCCEEECcCCcccc--cCchhHhhccccCcEEEeecccccc--ccchhccCCCCCcEEEccCCccccc-CCccccCCC
Q 040833          189 ASRLELLQISDNNFGG--MLPEAVGNLSTRLRILIVGNNQLFG--NIPSGLRNLVNLEFLHLGGNQFTGR-IPGSIVDLY  263 (503)
Q Consensus       189 ~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~~~  263 (503)
                      +|.++.|.++.|....  ..........+.+++++...|....  .....-+-+|++..+-+..|.+... ..+.+..++
T Consensus       145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p  224 (418)
T KOG2982|consen  145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP  224 (418)
T ss_pred             chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence            4444555555442211  1111222233356666666664431  0011112346666666666655431 223344455


Q ss_pred             CCCEEEccCCccccc-CCccccCCCCCCEEEccCCcCcc
Q 040833          264 KLQRLALEGNKFWGE-IPSSIGNLTLLITLNFEENMLEG  301 (503)
Q Consensus       264 ~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~  301 (503)
                      .+-.|+++.+++.+- ..+.+..++.|..|.++++++.+
T Consensus       225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             cchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            555666666665422 11345566677777777666653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.22  E-value=2.2e-06  Score=71.33  Aligned_cols=122  Identities=21%  Similarity=0.190  Sum_probs=89.6

Q ss_pred             ceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCC
Q 040833          339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRN  418 (503)
Q Consensus       339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  418 (503)
                      +.+++.+.++.... ..=........+||++|.+...  ..|..++.|++|.+++|+|+.+.|..-..+++|..|.+.+|
T Consensus        22 ~e~~LR~lkip~ie-nlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   22 RELDLRGLKIPVIE-NLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             cccccccccccchh-hccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            45666666665221 1111234667899999998632  45778999999999999999887777777899999999999


Q ss_pred             ccccc-cCccCcCCCCCCeeecCCCcCcccCC----CCCccCCCCceecc
Q 040833          419 NLSGR-IPKYLENFPFLQNLNLSFNHFEGEVP----IKGVFSNSSAISID  463 (503)
Q Consensus       419 ~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~l~~l~~~  463 (503)
                      .|... ...-+..+|.|++|.+-+|++....-    ....+++++.++..
T Consensus        99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen   99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence            98643 22347789999999999999875433    34556777777754

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.15  E-value=6.5e-06  Score=66.51  Aligned_cols=126  Identities=17%  Similarity=0.160  Sum_probs=70.4

Q ss_pred             CCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCC
Q 040833            8 VPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNL   87 (503)
Q Consensus         8 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l   87 (503)
                      -..+|.++++|+.+.+.. .++......|.++++++.+.+..+ +..+...+|..++.|+.+.+.. .+.......|..+
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence            356788888999998875 566677778888888999988775 6666667788888888888866 4443556678888


Q ss_pred             CCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCC
Q 040833           88 SSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLM  140 (503)
Q Consensus        88 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~  140 (503)
                      ++++.+.+..+ +. .++...+... +|+.+.+.. .++......|.++++|+
T Consensus        81 ~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   81 TNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             ccccccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            88888888765 44 6666666656 888888765 34435555666666653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.10  E-value=6.2e-08  Score=89.06  Aligned_cols=297  Identities=16%  Similarity=0.092  Sum_probs=158.5

Q ss_pred             CCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCc-ccccCchhHhhccccCcEEEeeccc-cccccch-hccC
Q 040833          161 KLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNN-FGGMLPEAVGNLSTRLRILIVGNNQ-LFGNIPS-GLRN  237 (503)
Q Consensus       161 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~-~~~~  237 (503)
                      .|++|.+.++.-...    ...-.....|+++++|.+.+|. +++.....+++...+++++++..|. +++.... ....
T Consensus       139 ~lk~LSlrG~r~v~~----sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g  214 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGD----SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG  214 (483)
T ss_pred             ccccccccccccCCc----chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence            456666655542221    1222334557777777777764 3434444556666678888887754 3332222 3356


Q ss_pred             CCCCcEEEccCCc-ccccCC-ccccCCCCCCEEEccCCccccc--CCccccCCCCCCEEEccCCcC-cccC-CccccCCC
Q 040833          238 LVNLEFLHLGGNQ-FTGRIP-GSIVDLYKLQRLALEGNKFWGE--IPSSIGNLTLLITLNFEENML-EGSI-PSSLGKCQ  311 (503)
Q Consensus       238 ~~~L~~L~ls~n~-~~~~~~-~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~~-~~~~-~~~~~~~~  311 (503)
                      +++|++++++.+. +++... ..+.++..++.+...||.-.+.  +...-..++.+.++++..|.. ++.. ...-..+.
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            7888888888773 443211 1234555566666666542211  001113445556666555542 2211 11223456


Q ss_pred             CCCEEECcCCcC-cccCCcchhc-cccccceeEccCCC-CccCCCcchh-cCCCCCeEeCCCCcccc--cCCccccCCCC
Q 040833          312 NLISLNLSNNNL-SGTIPTEVIG-LSSLSIYLDLSQNQ-LNGPLPSNFG-ILKNLGAIDISENKLSG--QIPSSIGSCTR  385 (503)
Q Consensus       312 ~L~~L~l~~n~~-~~~~~~~~~~-~~~l~~~L~l~~n~-l~~~~~~~~~-~~~~L~~L~l~~n~l~~--~~~~~~~~~~~  385 (503)
                      .|+.++.+++.- +...-..+.. ..++ +.+.++.|+ +++.....++ +++.|+.+++..+....  .+...-.+++.
T Consensus       295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L-~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~  373 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLWALGQHCHNL-QVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR  373 (483)
T ss_pred             HhhhhcccCCCCCchHHHHHHhcCCCce-EEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence            777777777633 2111122222 2333 677777765 3333222232 46778888888775431  23333456788


Q ss_pred             CCEEECCCCcCc-ccC----chhccCCCCCCEEeCCCCccc-cccCccCcCCCCCCeeecCCCcCcccC---CCCCccCC
Q 040833          386 LEQLVMNGNFFQ-GNI----PSSLSSLRGIENLDLSRNNLS-GRIPKYLENFPFLQNLNLSFNHFEGEV---PIKGVFSN  456 (503)
Q Consensus       386 L~~L~L~~n~l~-~~~----~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~~  456 (503)
                      |++|.+++|... +..    ...-..+..|+.+.+++++.. +...+.+..+++|+.+++-+|.--...   +....+++
T Consensus       374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~  453 (483)
T KOG4341|consen  374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPN  453 (483)
T ss_pred             hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcc
Confidence            888888888543 221    122235677888888888763 334556677788888888888543222   23333455


Q ss_pred             CCceec
Q 040833          457 SSAISI  462 (503)
Q Consensus       457 l~~l~~  462 (503)
                      ++...+
T Consensus       454 i~v~a~  459 (483)
T KOG4341|consen  454 IKVHAY  459 (483)
T ss_pred             ceehhh
Confidence            554443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.09  E-value=1.3e-07  Score=73.36  Aligned_cols=60  Identities=28%  Similarity=0.324  Sum_probs=24.0

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCc
Q 040833          264 KLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLS  324 (503)
Q Consensus       264 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  324 (503)
                      .|+..++++|.+.+..+..-..++.++++++.+|.+.+ .|..+..++.|+.++++.|++.
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccc
Confidence            33344444444442222222233344444444444442 2222444444444444444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.06  E-value=2e-07  Score=72.34  Aligned_cols=59  Identities=19%  Similarity=0.351  Sum_probs=26.1

Q ss_pred             CCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccc
Q 040833          361 NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS  421 (503)
Q Consensus       361 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  421 (503)
                      .++.+++++|.+. .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.|+..+|.+.
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            3444444444444 33333444444444444444444 33333333444444444444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.04  E-value=4.7e-06  Score=52.20  Aligned_cols=36  Identities=39%  Similarity=0.633  Sum_probs=17.1

Q ss_pred             CCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccc
Q 040833          385 RLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS  421 (503)
Q Consensus       385 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  421 (503)
                      +|++|++++|+++ .++..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 23333455555555555555554

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.04  E-value=1e-07  Score=87.62  Aligned_cols=84  Identities=19%  Similarity=0.037  Sum_probs=41.0

Q ss_pred             CCCEEECCCCccccCCC-cc-ccCCCCCCEEEcccceee-eeCCc-cccCCCCCcEEEccCC-CCcccCchhhhcCCCCC
Q 040833           41 SLEALSASANQFVGQIP-ET-LSQLKRMLYLLLGVNKLS-GEIPF-SIYNLSSLNYICVPVN-QLQGSLPSDLGFTLPNL  115 (503)
Q Consensus        41 ~L~~L~l~~n~i~~~~~-~~-~~~l~~L~~L~L~~n~i~-~~~~~-~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~L  115 (503)
                      .|+.|.+.++.-.+.-+ .. -..++++++|.+.++... ...-. .-..+++|+++++..+ .+++..-+.+..++++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            45666666554322211 11 245566666666665411 11101 1224566666666663 34433344455556666


Q ss_pred             CEEEccCCc
Q 040833          116 EVLNLCRNQ  124 (503)
Q Consensus       116 ~~L~l~~n~  124 (503)
                      ++++++++.
T Consensus       219 ~~lNlSwc~  227 (483)
T KOG4341|consen  219 KYLNLSWCP  227 (483)
T ss_pred             HHhhhccCc
Confidence            666666654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.93  E-value=2.6e-06  Score=87.53  Aligned_cols=156  Identities=22%  Similarity=0.240  Sum_probs=78.7

Q ss_pred             CCCCEEEcccceeeee-CCccc-cCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 040833           64 KRMLYLLLGVNKLSGE-IPFSI-YNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMR  141 (503)
Q Consensus        64 ~~L~~L~L~~n~i~~~-~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  141 (503)
                      .+|++|++++...-.. -+..+ .-+|.|++|.+.+-.+...--..+...+|+|..||+++++++..  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            5677777766442211 11112 23567777776665543222234444567777777777766622  45666666666


Q ss_pred             EecccCcCccc--CCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcE
Q 040833          142 LVIAKNGFSGK--VPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRI  219 (503)
Q Consensus       142 L~l~~n~~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  219 (503)
                      |.+.+=.+...  ...+..+++|+.||+|.........-...+.+.-..+|+|+.||.+++.+.....+.+..-.++|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            66665544421  1125666677777766654433221111223333345666666666665554433333332234444


Q ss_pred             EE
Q 040833          220 LI  221 (503)
Q Consensus       220 L~  221 (503)
                      +.
T Consensus       280 i~  281 (699)
T KOG3665|consen  280 IA  281 (699)
T ss_pred             hh
Confidence            33

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.92  E-value=7.8e-05  Score=70.75  Aligned_cols=188  Identities=16%  Similarity=0.199  Sum_probs=110.6

Q ss_pred             ccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCC-CCccCCCcchhcCCC
Q 040833          283 IGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN-QLNGPLPSNFGILKN  361 (503)
Q Consensus       283 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n-~l~~~~~~~~~~~~~  361 (503)
                      +..+.+++.|++++|.++. .|.   -.++|++|.+++|.-....|..+.  +.+ +.|++++| .+. .+|      +.
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nL-e~L~Ls~Cs~L~-sLP------~s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSIP--EGL-EKLTVCHCPEIS-GLP------ES  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchhh--hhh-hheEccCccccc-ccc------cc
Confidence            3446889999999998873 342   245799999998755446665432  244 89999988 554 333      46


Q ss_pred             CCeEeCCCCcccc--cCCccccCCCCCCEEECCCCc-Ccc-cCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCee
Q 040833          362 LGAIDISENKLSG--QIPSSIGSCTRLEQLVMNGNF-FQG-NIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNL  437 (503)
Q Consensus       362 L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  437 (503)
                      |+.|+++++....  .+|      ++|+.|.+.+++ ... ..+..  -.++|++|++++|... ..|..+.  .+|+.|
T Consensus       114 Le~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L  182 (426)
T PRK15386        114 VRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSI  182 (426)
T ss_pred             cceEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEE
Confidence            8888887665431  222      357777775433 111 11111  1268999999998866 3444333  589999


Q ss_pred             ecCCCcCccc-CCCCCccCCCCceeccCCCCCc-ccCCCCCCCCCCCCCcccccccceEEE
Q 040833          438 NLSFNHFEGE-VPIKGVFSNSSAISIDGNDNLC-GGISELHLSTCSIKESKQSRSRSLKLI  496 (503)
Q Consensus       438 ~l~~n~l~~~-~~~~~~~~~l~~l~~~~n~~~c-~~~~~~~ls~~~~~~~~~~~~~~~~~~  496 (503)
                      +++.+..... .+.....+++ .+.+.++..+- ..++..+++++-..+...-.|+-.-+|
T Consensus       183 ~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f~d~~i~~~~~~~~~~~~~~~gd~~  242 (426)
T PRK15386        183 TLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVFKDKNITFQGNALDVALHFRLGDIV  242 (426)
T ss_pred             EecccccccccCccccccccc-EechhhhcccCHHHhhcccccccCcccchhcccccCCEE
Confidence            9987743221 1111122344 55555442222 345667777777766644444443333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.92  E-value=7.3e-06  Score=51.33  Aligned_cols=40  Identities=40%  Similarity=0.571  Sum_probs=32.5

Q ss_pred             CCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccC
Q 040833          408 RGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEV  448 (503)
Q Consensus       408 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  448 (503)
                      ++|++|++++|+|++. +..+.++++|+.|++++|+++...
T Consensus         1 ~~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCCCCc
Confidence            5799999999999954 556899999999999999998543

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.90  E-value=4.8e-05  Score=61.40  Aligned_cols=38  Identities=21%  Similarity=0.373  Sum_probs=12.5

Q ss_pred             cccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcC
Q 040833          282 SIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSN  320 (503)
Q Consensus       282 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  320 (503)
                      .|..+++|+.+.+.+ .+......+|..+++|+++.+.+
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~   44 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN   44 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence            344444444444442 23333334444444444444433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.86  E-value=6.9e-05  Score=71.10  Aligned_cols=32  Identities=9%  Similarity=0.240  Sum_probs=14.4

Q ss_pred             CCCCeEeCCCCcccccCCccccCCCCCCEEECCCC
Q 040833          360 KNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGN  394 (503)
Q Consensus       360 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  394 (503)
                      ++|++|++++|... ..|..+.  .+|+.|+++.+
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            34555555555443 2233222  34555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.65  E-value=2e-05  Score=81.13  Aligned_cols=137  Identities=21%  Similarity=0.250  Sum_probs=93.3

Q ss_pred             CCCCEEECcCCc-ccccCchhHhhccccCcEEEeecccccc-ccchhccCCCCCcEEEccCCcccccCCccccCCCCCCE
Q 040833          190 SRLELLQISDNN-FGGMLPEAVGNLSTRLRILIVGNNQLFG-NIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQR  267 (503)
Q Consensus       190 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~  267 (503)
                      .+|++|++++.. +...++..++...|.|+.|.+.+-.+.. .......++|+|..||||+++++..  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            567788887754 3334555666666689999988877643 2334457888999999999888844  56788888888


Q ss_pred             EEccCCccccc-CCccccCCCCCCEEEccCCcCcccC------CccccCCCCCCEEECcCCcCcccCC
Q 040833          268 LALEGNKFWGE-IPSSIGNLTLLITLNFEENMLEGSI------PSSLGKCQNLISLNLSNNNLSGTIP  328 (503)
Q Consensus       268 L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~------~~~~~~~~~L~~L~l~~n~~~~~~~  328 (503)
                      |.+.+-.+..- .-..+..+++|+.||+|+.......      -+.-..+|.|+.||.+++.+.+...
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l  267 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL  267 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence            88887776531 1123556889999999877643221      1223347889999999888775443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.43  E-value=7.1e-05  Score=65.33  Aligned_cols=105  Identities=21%  Similarity=0.182  Sum_probs=47.7

Q ss_pred             CCCCCCEEECCCCccccCCCccccCCCCCCEEEcccc--eeeeeCCccccCCCCCcEEEccCCCCcc-cCchhhhcCCCC
Q 040833           38 NLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVN--KLSGEIPFSIYNLSSLNYICVPVNQLQG-SLPSDLGFTLPN  114 (503)
Q Consensus        38 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~  114 (503)
                      .+..|+.|++.+..++..  ..|-.+++|++|.++.|  ++...++.-...+++|+++++++|+++. +-...+. .+++
T Consensus        41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~-~l~n  117 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK-ELEN  117 (260)
T ss_pred             cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh-hhcc
Confidence            334455555544444422  22455555555555555  4443333334444555555555555541 0001111 2445


Q ss_pred             CCEEEccCCcccccC---CccccCCCCCCEEecc
Q 040833          115 LEVLNLCRNQFTGPI---PASISNASNLMRLVIA  145 (503)
Q Consensus       115 L~~L~l~~n~~~~~~---~~~~~~~~~L~~L~l~  145 (503)
                      |..|++..|..+...   -..|..+++|+.|+-.
T Consensus       118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            556666555544210   0124445666655433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.02  E-value=1.7e-05  Score=69.43  Aligned_cols=82  Identities=26%  Similarity=0.257  Sum_probs=46.6

Q ss_pred             CCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCC--ccccCCCCCcE
Q 040833           15 LSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIP--FSIYNLSSLNY   92 (503)
Q Consensus        15 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~   92 (503)
                      +.+++.|+++|+.+.++  .-...++.|++|.|+-|+|+...|  |..+++|+.|.|..|.|.. +.  .-+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhh
Confidence            44566666666666532  223456666666666666664433  5666666666666666652 21  12455666666


Q ss_pred             EEccCCCCc
Q 040833           93 ICVPVNQLQ  101 (503)
Q Consensus        93 L~l~~n~~~  101 (503)
                      |.+..|.--
T Consensus        93 LWL~ENPCc  101 (388)
T KOG2123|consen   93 LWLDENPCC  101 (388)
T ss_pred             HhhccCCcc
Confidence            666655443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.97  E-value=0.00056  Score=59.86  Aligned_cols=101  Identities=23%  Similarity=0.278  Sum_probs=50.1

Q ss_pred             ceeEccCCCCccCCCcchhcCCCCCeEeCCCC--cccccCCccccCCCCCCEEECCCCcCccc-CchhccCCCCCCEEeC
Q 040833          339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISEN--KLSGQIPSSIGSCTRLEQLVMNGNFFQGN-IPSSLSSLRGIENLDL  415 (503)
Q Consensus       339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L  415 (503)
                      +.+.+.+..++..  ..|..+++|+.|.++.|  ++....+.....+++|++|++++|++... ....+..+.+|..|++
T Consensus        46 e~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl  123 (260)
T KOG2739|consen   46 ELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL  123 (260)
T ss_pred             hhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence            4444555554422  23455566666666666  44433333444556666666666666521 1122334455666666


Q ss_pred             CCCccccccC---ccCcCCCCCCeeecCC
Q 040833          416 SRNNLSGRIP---KYLENFPFLQNLNLSF  441 (503)
Q Consensus       416 ~~n~l~~~~~---~~~~~~~~L~~L~l~~  441 (503)
                      ..|..++...   ..|.-+++|++||-..
T Consensus       124 ~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  124 FNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             ccCCccccccHHHHHHHHhhhhccccccc
Confidence            6665543211   2244455555554433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.96  E-value=2.5e-05  Score=68.43  Aligned_cols=102  Identities=20%  Similarity=0.179  Sum_probs=71.5

Q ss_pred             CCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCE
Q 040833           38 NLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEV  117 (503)
Q Consensus        38 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  117 (503)
                      .+.+.+.|++.+|.+.++  ....+++.|+.|.|+-|+|+..  ..|..|++|++|+|..|.|.+--.-...+++|+|+.
T Consensus        17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            355677888889988754  4468899999999999998843  347888999999999998863222333456788888


Q ss_pred             EEccCCcccccCCc-----cccCCCCCCEEe
Q 040833          118 LNLCRNQFTGPIPA-----SISNASNLMRLV  143 (503)
Q Consensus       118 L~l~~n~~~~~~~~-----~~~~~~~L~~L~  143 (503)
                      |.|..|+.-+..+.     .+..+|+|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88877766543332     234456666654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.59  E-value=0.00018  Score=72.70  Aligned_cols=185  Identities=19%  Similarity=0.101  Sum_probs=96.7

Q ss_pred             ccCcEEEeeccccccc--cchhccCCCCCcEEEccCC-ccccc----CCccccCCCCCCEEEccCCc-ccccCCcccc-C
Q 040833          215 TRLRILIVGNNQLFGN--IPSGLRNLVNLEFLHLGGN-QFTGR----IPGSIVDLYKLQRLALEGNK-FWGEIPSSIG-N  285 (503)
Q Consensus       215 ~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~ls~n-~~~~~----~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~-~  285 (503)
                      +.++.+.+.++.-...  .......++.|++|+++++ .....    .......+++|+.++++.+. +++..-..+. .
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~  267 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR  267 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence            3788888877743322  2344567788888888863 11111    11233456778888888887 5444333333 3


Q ss_pred             CCCCCEEEccCCc-CcccC-CccccCCCCCCEEECcCCcCccc--CCcchhccccccceeEccCCCCccCCCcchhcCCC
Q 040833          286 LTLLITLNFEENM-LEGSI-PSSLGKCQNLISLNLSNNNLSGT--IPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKN  361 (503)
Q Consensus       286 ~~~L~~L~l~~n~-~~~~~-~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~  361 (503)
                      +++|++|.+.+|. +++.. ......+++|++|++++|.....  +......++.+ +.+.+..          ...+..
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l-~~l~~~~----------~~~c~~  336 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNL-RELKLLS----------LNGCPS  336 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcch-hhhhhhh----------cCCCcc
Confidence            7788888877776 44332 22345577788888887754311  11112222222 2221111          111334


Q ss_pred             CCeEeCCCCccc---ccCCccccCCCCCCEEECCCCcCcccC-chhccCCCCC
Q 040833          362 LGAIDISENKLS---GQIPSSIGSCTRLEQLVMNGNFFQGNI-PSSLSSLRGI  410 (503)
Q Consensus       362 L~~L~l~~n~l~---~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L  410 (503)
                      ++.+.+.++.-.   ......+..++.++.+.+..+...... ...+.+|+.|
T Consensus       337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            444444443221   112224456777777777777744332 2445555555

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.44  E-value=0.00049  Score=69.51  Aligned_cols=63  Identities=21%  Similarity=0.150  Sum_probs=29.2

Q ss_pred             CCCCCCEEECcCCc-ccccCchhHhhccccCcEEEeeccc-ccccc-chhccCCCCCcEEEccCCc
Q 040833          188 NASRLELLQISDNN-FGGMLPEAVGNLSTRLRILIVGNNQ-LFGNI-PSGLRNLVNLEFLHLGGNQ  250 (503)
Q Consensus       188 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~~~L~~L~ls~n~  250 (503)
                      .+++|+.++++++. +++..-..++...+.|++|.+.+|. +++.. ......++.|++|+++++.
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            34555555555554 4433333343333355555555554 33221 1122345556666666553

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.14  E-value=0.011  Score=30.61  Aligned_cols=19  Identities=42%  Similarity=0.515  Sum_probs=9.7

Q ss_pred             CCEEEcccceeeeeCCcccc
Q 040833           66 MLYLLLGVNKLSGEIPFSIY   85 (503)
Q Consensus        66 L~~L~L~~n~i~~~~~~~~~   85 (503)
                      |++|++++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 3443344

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.05  E-value=0.01  Score=30.72  Aligned_cols=11  Identities=73%  Similarity=0.884  Sum_probs=4.1

Q ss_pred             CEEeCCCCccc
Q 040833          411 ENLDLSRNNLS  421 (503)
Q Consensus       411 ~~L~L~~n~l~  421 (503)
                      ++||+++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.90  E-value=0.0028  Score=53.29  Aligned_cols=80  Identities=15%  Similarity=0.174  Sum_probs=41.1

Q ss_pred             ceeEccCCCCccCCCcchhcCCCCCeEeCCCCc-ccccCCccc-cCCCCCCEEECCCC-cCcccCchhccCCCCCCEEeC
Q 040833          339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENK-LSGQIPSSI-GSCTRLEQLVMNGN-FFQGNIPSSLSSLRGIENLDL  415 (503)
Q Consensus       339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L  415 (503)
                      +.++-+++.|..+....+..++.++.|.+.+|. +.+.-.+.+ .-.++|+.|++++| +||+-...++..+++|+.|.+
T Consensus       104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l  183 (221)
T KOG3864|consen  104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL  183 (221)
T ss_pred             EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence            445555555554544555555666666666553 221100001 12356666666666 455545555666666666666


Q ss_pred             CCC
Q 040833          416 SRN  418 (503)
Q Consensus       416 ~~n  418 (503)
                      .+=
T Consensus       184 ~~l  186 (221)
T KOG3864|consen  184 YDL  186 (221)
T ss_pred             cCc
Confidence            544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.66  E-value=0.00012  Score=72.16  Aligned_cols=163  Identities=23%  Similarity=0.252  Sum_probs=78.1

Q ss_pred             cCCCCCcEEEccCCcccccC----CccccCC-CCCCEEEccCCcccccCC----ccccCCCCCCEEEccCCcCccc----
Q 040833          236 RNLVNLEFLHLGGNQFTGRI----PGSIVDL-YKLQRLALEGNKFWGEIP----SSIGNLTLLITLNFEENMLEGS----  302 (503)
Q Consensus       236 ~~~~~L~~L~ls~n~~~~~~----~~~~~~~-~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~----  302 (503)
                      ...+.|+.|++++|.+.+..    ...+... ..++.|++..|.++....    ..+...+.+++++++.|.+...    
T Consensus       112 ~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~  191 (478)
T KOG4308|consen  112 KTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLV  191 (478)
T ss_pred             cccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHH
Confidence            34455555555555544211    1112221 344445555555543322    2233355556666666554211    


Q ss_pred             CCccc----cCCCCCCEEECcCCcCcccC----CcchhccccccceeEccCCCCccCC----CcchhcC-CCCCeEeCCC
Q 040833          303 IPSSL----GKCQNLISLNLSNNNLSGTI----PTEVIGLSSLSIYLDLSQNQLNGPL----PSNFGIL-KNLGAIDISE  369 (503)
Q Consensus       303 ~~~~~----~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~l~~~L~l~~n~l~~~~----~~~~~~~-~~L~~L~l~~  369 (503)
                      .+..+    ....++++|++.+|.++...    ...+...+.....+++.+|.+.+..    ...+..+ ..+++++++.
T Consensus       192 l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~  271 (478)
T KOG4308|consen  192 LSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSR  271 (478)
T ss_pred             HhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhc
Confidence            11122    23456666667666654211    1222233332244667777666431    1223333 4566777777


Q ss_pred             CcccccC----CccccCCCCCCEEECCCCcCcc
Q 040833          370 NKLSGQI----PSSIGSCTRLEQLVMNGNFFQG  398 (503)
Q Consensus       370 n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~  398 (503)
                      |.+++..    ...+..+++++++.+++|.++.
T Consensus       272 nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  272 NSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             CCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            7776432    3344556677777777776663

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.20  E-value=0.002  Score=55.35  Aligned_cols=88  Identities=23%  Similarity=0.287  Sum_probs=62.6

Q ss_pred             chhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCC
Q 040833          355 NFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFL  434 (503)
Q Consensus       355 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  434 (503)
                      .+....+.+.||++.|++. ..-.-|+.+..|..|+++.|.+. ..|..+.+...++.+++..|..+ ..|..+...|++
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            3455667777777777765 34445666677777778777776 66777777777777777777777 556777777888


Q ss_pred             CeeecCCCcCc
Q 040833          435 QNLNLSFNHFE  445 (503)
Q Consensus       435 ~~L~l~~n~l~  445 (503)
                      +++++.+|++.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            88888777754

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.10  E-value=0.0018  Score=55.64  Aligned_cols=86  Identities=20%  Similarity=0.212  Sum_probs=48.2

Q ss_pred             cCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCc
Q 040833           12 LGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLN   91 (503)
Q Consensus        12 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~   91 (503)
                      +..++..+.||++.|++. ..-..|+.+..+..|+++.|.+. ..|..++....++++++..|..+ ..|.+++..+.++
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            344555566666665554 33344555555666666655555 45555555555566665555554 4555566666666


Q ss_pred             EEEccCCCC
Q 040833           92 YICVPVNQL  100 (503)
Q Consensus        92 ~L~l~~n~~  100 (503)
                      ++++.++.+
T Consensus       115 ~~e~k~~~~  123 (326)
T KOG0473|consen  115 KNEQKKTEF  123 (326)
T ss_pred             hhhhccCcc
Confidence            555555543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.17  E-value=0.096  Score=25.02  Aligned_cols=14  Identities=36%  Similarity=0.608  Sum_probs=6.8

Q ss_pred             CCCcEEEcccCcCC
Q 040833           16 SKLRILAMHRNNLS   29 (503)
Q Consensus        16 ~~L~~L~l~~n~i~   29 (503)
                      ++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~n~L~   14 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT   14 (17)
T ss_dssp             TT-SEEEETSS--S
T ss_pred             CccCEEECCCCCCC
Confidence            35666666666655

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.36  E-value=0.15  Score=27.43  Aligned_cols=16  Identities=44%  Similarity=0.578  Sum_probs=7.8

Q ss_pred             CCCCEEeCCCCccccc
Q 040833          408 RGIENLDLSRNNLSGR  423 (503)
Q Consensus       408 ~~L~~L~L~~n~l~~~  423 (503)
                      ++|++|+|++|+++.+
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3445555555555433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.36  E-value=0.15  Score=27.43  Aligned_cols=16  Identities=44%  Similarity=0.578  Sum_probs=7.8

Q ss_pred             CCCCEEeCCCCccccc
Q 040833          408 RGIENLDLSRNNLSGR  423 (503)
Q Consensus       408 ~~L~~L~L~~n~l~~~  423 (503)
                      ++|++|+|++|+++.+
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3445555555555433

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.76  E-value=0.0015  Score=64.54  Aligned_cols=89  Identities=26%  Similarity=0.275  Sum_probs=53.0

Q ss_pred             CCCCCEEECcCCcccccC----chhHhhccccCcEEEeeccccccc----cchhccCC-CCCcEEEccCCccccc----C
Q 040833          189 ASRLELLQISDNNFGGML----PEAVGNLSTRLRILIVGNNQLFGN----IPSGLRNL-VNLEFLHLGGNQFTGR----I  255 (503)
Q Consensus       189 ~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~ls~n~~~~~----~  255 (503)
                      ..++++|++.+|.++...    ...+...+..+..+++..|.+.+.    ....+..+ +.++.++++.|.+.+.    +
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            455666777766655321    122333332255577777766543    12233444 6778888888887753    3


Q ss_pred             CccccCCCCCCEEEccCCcccc
Q 040833          256 PGSIVDLYKLQRLALEGNKFWG  277 (503)
Q Consensus       256 ~~~~~~~~~L~~L~l~~n~~~~  277 (503)
                      ...+..++.++.+.++.|.+.+
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHhhhHHHHHhhcccCcccc
Confidence            3445666788888888888764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.22  E-value=0.049  Score=46.12  Aligned_cols=36  Identities=14%  Similarity=0.123  Sum_probs=20.6

Q ss_pred             CCCCEEEccCCcCcccCCccccCCCCCCEEECcCCc
Q 040833          287 TLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNN  322 (503)
Q Consensus       287 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  322 (503)
                      ..++.++-+++.|.....+.+..++.++.|.+.+|.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            345566666666655555555555666666665553

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.17  E-value=0.41  Score=25.71  Aligned_cols=21  Identities=19%  Similarity=0.335  Sum_probs=12.4

Q ss_pred             CCCCEEECCCCcCcccCchhc
Q 040833          384 TRLEQLVMNGNFFQGNIPSSL  404 (503)
Q Consensus       384 ~~L~~L~L~~n~l~~~~~~~~  404 (503)
                      ++|+.|+|++|.+....+..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456777777777664433433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.17  E-value=0.41  Score=25.71  Aligned_cols=21  Identities=19%  Similarity=0.335  Sum_probs=12.4

Q ss_pred             CCCCEEECCCCcCcccCchhc
Q 040833          384 TRLEQLVMNGNFFQGNIPSSL  404 (503)
Q Consensus       384 ~~L~~L~L~~n~l~~~~~~~~  404 (503)
                      ++|+.|+|++|.+....+..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456777777777664433433

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.34  E-value=0.14  Score=27.03  Aligned_cols=13  Identities=46%  Similarity=0.802  Sum_probs=4.6

Q ss_pred             CCCEEeCCCCccc
Q 040833          409 GIENLDLSRNNLS  421 (503)
Q Consensus       409 ~L~~L~L~~n~l~  421 (503)
                      +|++|+|++|+++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444443

...

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=82.26  E-value=5.6  Score=38.71  Aligned_cols=58  Identities=24%  Similarity=0.324  Sum_probs=26.1

Q ss_pred             CCEEECCCCcCcccC---chhccCCCCCCEEeCCCCccccc----cCccCcCCCCCCeeecCCCc
Q 040833          386 LEQLVMNGNFFQGNI---PSSLSSLRGIENLDLSRNNLSGR----IPKYLENFPFLQNLNLSFNH  443 (503)
Q Consensus       386 L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~  443 (503)
                      +..+.++.|......   ......-+.+..|++++|.....    +|...+....++.+..+.|.
T Consensus       415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~  479 (553)
T KOG4242|consen  415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL  479 (553)
T ss_pred             ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence            445555555444211   11223334555666666655422    33334444445555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	503
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		8e-41
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		9e-41
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-23
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-06
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		4e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		4e-04
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		6e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  164 bits (416), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 152/495 (30%), Positives = 218/495 (44%), Gaps = 35/495 (7%)
Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSF-GNXXXXXXXXXXXNQFVGQIPETL 60
           N+ VG +P     L  L+ L++  N  +GEIP    G            N F G +P   
Sbjct: 254 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 61  SQLKRMLYLLLGVNKLSGEIPF-SIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLN 119
                +  L L  N  SGE+P  ++  +  L  + +  N+  G LP  L     +L  L+
Sbjct: 312 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 371
Query: 120 LCRNQFTGPI-PASISNASN-LMRLVIAKNGFSGKVP-SLKILHKLEWVGISRNHLGNGK 176
           L  N F+GPI P    N  N L  L +  NGF+GK+P +L    +L  + +S N+L    
Sbjct: 372 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG-- 429
Query: 177 KDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLR 236
                  +SL + S+L  L++  N   G +P+ +  + T L  LI+  N L G IPSGL 
Sbjct: 430 ----TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLS 484
Query: 237 NLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEE 296
           N  NL ++ L  N+ TG IP  I  L  L  L L  N F G IP+ +G+   LI L+   
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 544
Query: 297 NMLEGSIPSSLGK-----CQXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQLN-- 349
           N+  G+IP+++ K                      +  E  G  +L  +  +   QLN  
Sbjct: 545 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 604
Query: 350 --------------GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF 395
                         G     F    ++  +D+S N LSG IP  IGS   L  L +  N 
Sbjct: 605 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 664
Query: 396 FQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFS 455
             G+IP  +  LRG+  LDLS N L GRIP+ +     L  ++LS N+  G +P  G F 
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 724
Query: 456 NSSAISIDGNDNLCG 470
                    N  LCG
Sbjct: 725 TFPPAKFLNNPGLCG 739

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  164 bits (415), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 152/495 (30%), Positives = 218/495 (44%), Gaps = 35/495 (7%)
Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSF-GNXXXXXXXXXXXNQFVGQIPETL 60
           N+ VG +P     L  L+ L++  N  +GEIP    G            N F G +P   
Sbjct: 257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 61  SQLKRMLYLLLGVNKLSGEIPF-SIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLN 119
                +  L L  N  SGE+P  ++  +  L  + +  N+  G LP  L     +L  L+
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
Query: 120 LCRNQFTGPI-PASISNASN-LMRLVIAKNGFSGKVP-SLKILHKLEWVGISRNHLGNGK 176
           L  N F+GPI P    N  N L  L +  NGF+GK+P +L    +L  + +S N+L    
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG-- 432
Query: 177 KDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLR 236
                  +SL + S+L  L++  N   G +P+ +  + T L  LI+  N L G IPSGL 
Sbjct: 433 ----TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLS 487
Query: 237 NLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEE 296
           N  NL ++ L  N+ TG IP  I  L  L  L L  N F G IP+ +G+   LI L+   
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547
Query: 297 NMLEGSIPSSLGK-----CQXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQLN-- 349
           N+  G+IP+++ K                      +  E  G  +L  +  +   QLN  
Sbjct: 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607
Query: 350 --------------GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF 395
                         G     F    ++  +D+S N LSG IP  IGS   L  L +  N 
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667
Query: 396 FQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFS 455
             G+IP  +  LRG+  LDLS N L GRIP+ +     L  ++LS N+  G +P  G F 
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727
Query: 456 NSSAISIDGNDNLCG 470
                    N  LCG
Sbjct: 728 TFPPAKFLNNPGLCG 742

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score =  105 bits (262), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 111/241 (46%), Gaps = 3/241 (1%)
Query: 231 IPSGLRNLVNLEFLHLGG-NQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLL 289
           IPS L NL  L FL++GG N   G IP +I  L +L  L +      G IP  +  +  L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 290 ITLNFEENMLEGSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQLN 349
           +TL+F  N L G++P S+                 G IP      S L   + +S+N+L 
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 350 GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRG 409
           G +P  F  L NL  +D+S N L G      GS    +++ +  N    ++   +   + 
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKN 245
Query: 410 IENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLC 469
           +  LDL  N + G +P+ L    FL +LN+SFN+  GE+P  G        +   N  LC
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305
Query: 470 G 470
           G
Sbjct: 306 G 306

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 3/146 (2%)
Query: 327 IPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRL 386
           IP+ +  L  L+       N L GP+P     L  L  + I+   +SG IP  +     L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 387 EQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENF-PFLQNLNLSFNHFE 445
             L  + N   G +P S+SSL  +  +    N +SG IP    +F     ++ +S N   
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 446 GEVPIKGVFSNSSAISIDGNDNLCGG 471
           G++P    F+N +   +D + N+  G
Sbjct: 188 GKIP--PTFANLNLAFVDLSRNMLEG 211

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Query: 326 TIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI---LKNLGAIDISENKLSGQIPSSIGS 382
           T+ +  +GL  L  +LD   + L     S F +   L+NL  +DIS              
Sbjct: 411 TMSSNFLGLEQLE-HLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 467
Query: 383 CTRLEQLVMNGNFFQGN-IPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSF 441
            + LE L M GN FQ N +P   + LR +  LDLS+  L    P    +   LQ LN+S 
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 442 NHF 444
           N+F
Sbjct: 528 NNF 530

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Query: 326 TIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI---LKNLGAIDISENKLSGQIPSSIGS 382
           T+ +  +GL  L  +LD   + L     S F +   L+NL  +DIS              
Sbjct: 387 TMSSNFLGLEQLE-HLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443
Query: 383 CTRLEQLVMNGNFFQGN-IPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSF 441
            + LE L M GN FQ N +P   + LR +  LDLS+  L    P    +   LQ LN+S 
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 442 NHF 444
           N+F
Sbjct: 504 NNF 506

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Query: 326 TIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI---LKNLGAIDISENKLSGQIPSSIGS 382
           T+ +  +GL  L  +LD   + L     S F +   L+NL  +DIS              
Sbjct: 92  TMSSNFLGLEQLE-HLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 383 CTRLEQLVMNGNFFQGN-IPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSF 441
            + LE L M GN FQ N +P   + LR +  LDLS+  L    P    +   LQ LN+S 
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 442 NHF 444
           N+F
Sbjct: 209 NNF 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	503
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-129
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-103
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-103
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-102
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-101
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-67
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-59
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-68
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-40
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-67
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-62
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-61
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-55
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-37
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-40
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-35
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  393 bits (1011), Expect = e-129
 Identities = 155/498 (31%), Positives = 229/498 (45%), Gaps = 23/498 (4%)

Query: 2   NELVGKVPGKL-GSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIP-ET 59
           N+  G++P  L G+   L  L +  N+  G +P  FG+ S LE+L+ S+N F G++P +T
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338

Query: 60  LSQLKRMLYLLLGVNKLSGEIPFSIYNLS-SLNYICVPVNQLQGSLPSDLG-FTLPNLEV 117
           L +++ +  L L  N+ SGE+P S+ NLS SL  + +  N   G +  +L       L+ 
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398

Query: 118 LNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVP-SLKILHKLEWVGISRNHLGNGK 176
           L L  N FTG IP ++SN S L+ L ++ N  SG +P SL  L KL  + +  N L  G 
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML-EG- 456

Query: 177 KDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLR 236
               E    L+    LE L +  N+  G +P  + N  T L  + + NN+L G IP  + 
Sbjct: 457 ----EIPQELMYVKTLETLILDFNDLTGEIPSGLSNC-TNLNWISLSNNRLTGEIPKWIG 511

Query: 237 NLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEE 296
            L NL  L L  N F+G IP  + D   L  L L  N F G IP+++   +  I  NF  
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF-- 569

Query: 297 NMLEGSIPSSLGKCQNLISLNLSNN--NLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPS 354
             + G     +         + + N     G    ++  LS+     +++     G    
Sbjct: 570 --IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR-NPCNITSRVYGGHTSP 626

Query: 355 NFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLD 414
            F    ++  +D+S N LSG IP  IGS   L  L +  N   G+IP  +  LRG+  LD
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686

Query: 415 LSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISE 474
           LS N L GRIP+ +     L  ++LS N+  G +P  G F          N  LCG    
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG---- 742

Query: 475 LHLSTCSIKESKQSRSRS 492
             L  C    +       
Sbjct: 743 YPLPRCDPSNADGYAHHQ 760

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  326 bits (837), Expect = e-103
 Identities = 135/458 (29%), Positives = 209/458 (45%), Gaps = 21/458 (4%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPE-- 58
            N     V   L SL+ L  L +  ++++G +   F   +SL +L  S N   G +    
Sbjct: 62  LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLT 120

Query: 59  TLSQLKRMLYLLLGVNKLSGEIPFSI-YNLSSLNYICVPVNQLQGSLPSDLGFT--LPNL 115
           +L     + +L +  N L      S    L+SL  + +  N + G+       +     L
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180

Query: 116 EVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNG 175
           + L +  N+ +G +   +S   NL  L ++ N FS  +P L     L+ + IS N L +G
Sbjct: 181 KHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL-SG 237

Query: 176 KKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGL 235
                +F  ++   + L+LL IS N F G +P         L+ L +  N+  G IP  L
Sbjct: 238 -----DFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFL 289

Query: 236 R-NLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIP-SSIGNLTLLITLN 293
                 L  L L GN F G +P        L+ LAL  N F GE+P  ++  +  L  L+
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349

Query: 294 FEENMLEGSIPSSLGKC-QNLISLNLSNNNLSGTIPTEVIGLSSLSI-YLDLSQNQLNGP 351
              N   G +P SL     +L++L+LS+NN SG I   +      ++  L L  N   G 
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409

Query: 352 LPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIE 411
           +P        L ++ +S N LSG IPSS+GS ++L  L +  N  +G IP  L  ++ +E
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469

Query: 412 NLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449
            L L  N+L+G IP  L N   L  ++LS N   GE+P
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  325 bits (835), Expect = e-103
 Identities = 134/456 (29%), Positives = 207/456 (45%), Gaps = 44/456 (9%)

Query: 2   NELVGKVP-GKLGSLSKLRILAMHRNNLSGEIPSSF---GNLSSLEALSASANQFVGQIP 57
           N L           L+ L +L +  N++SG     +        L+ L+ S N+  G + 
Sbjct: 136 NTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195

Query: 58  ETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEV 117
             +S+   + +L +  N  S  IP  + + S+L ++ +  N+L G     +  T   L++
Sbjct: 196 --VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKL 251

Query: 118 LNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKK 177
           LN+  NQF GPIP       +L  L +A+N F+G++P                       
Sbjct: 252 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPD---------------------- 287

Query: 178 DDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIP-SGLR 236
                  +      L  L +S N+F G +P   G+ S  L  L + +N   G +P   L 
Sbjct: 288 ---FLSGAC---DTLTGLDLSGNHFYGAVPPFFGSCS-LLESLALSSNNFSGELPMDTLL 340

Query: 237 NLVNLEFLHLGGNQFTGRIPGSIVDL-YKLQRLALEGNKFWGEIPSSIGNLTL--LITLN 293
            +  L+ L L  N+F+G +P S+ +L   L  L L  N F G I  ++       L  L 
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400

Query: 294 FEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLP 353
            + N   G IP +L  C  L+SL+LS N LSGTIP+ +  LS L   L L  N L G +P
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR-DLKLWLNMLEGEIP 459

Query: 354 SNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENL 413
                +K L  + +  N L+G+IPS + +CT L  + ++ N   G IP  +  L  +  L
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519

Query: 414 DLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449
            LS N+ SG IP  L +   L  L+L+ N F G +P
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  321 bits (826), Expect = e-102
 Identities = 138/478 (28%), Positives = 207/478 (43%), Gaps = 44/478 (9%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETL 60
            N     +P  LG  S L+ L +  N LSG+   +    + L+ L+ S+NQFVG IP   
Sbjct: 209 SNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-- 265

Query: 61  SQLKRMLYLLLGVNKLSGEIPFSIY-NLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLN 119
             LK + YL L  NK +GEIP  +     +L  + +  N   G++P   G +   LE L 
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLA 324

Query: 120 LCRNQFTGPIPA-SISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKD 178
           L  N F+G +P  ++     L  L ++ N FSG++P                 L N    
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE---------------SLTNLS-- 367

Query: 179 DLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLS-TRLRILIVGNNQLFGNIPSGLRN 237
                      + L  L +S NNF G +   +       L+ L + NN   G IP  L N
Sbjct: 368 -----------ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416

Query: 238 LVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEEN 297
              L  LHL  N  +G IP S+  L KL+ L L  N   GEIP  +  +  L TL  + N
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476

Query: 298 MLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFG 357
            L G IPS L  C NL  ++LSNN L+G IP  +  L +L+I L LS N  +G +P+  G
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI-LKLSNNSFSGNIPAELG 535

Query: 358 ILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSR 417
             ++L  +D++ N  +G IP+++   +      +  NF  G     + +    +    + 
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAG 591

Query: 418 N--NLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIK-GVFSNSSAISIDGNDNLCGGI 472
           N     G   + L         N++   + G          +   + +  N  L G I
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYI 648

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  320 bits (823), Expect = e-101
 Identities = 136/446 (30%), Positives = 207/446 (46%), Gaps = 21/446 (4%)

Query: 13  GSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLG 72
             ++ + + +   N     + SS  +L+ LE+L  S +   G +         +  L L 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLS 108

Query: 73  VNKLSGEIP--FSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIP 130
            N LSG +    S+ + S L ++ V  N L        G  L +LEVL+L  N  +G   
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 131 ASI---SNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLV 187
                      L  L I+ N  SG V   +    LE++ +S N+  +        +  L 
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVDVSR-CVNLEFLDVSSNNF-STG------IPFLG 220

Query: 188 NASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLG 247
           + S L+ L IS N   G    A+    T L++L + +NQ  G IP     L +L++L L 
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTC-TELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 277

Query: 248 GNQFTGRIPGSIV-DLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIP-S 305
            N+FTG IP  +      L  L L GN F+G +P   G+ +LL +L    N   G +P  
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337

Query: 306 SLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFG--ILKNLG 363
           +L K + L  L+LS N  SG +P  +  LS+  + LDLS N  +GP+  N        L 
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397

Query: 364 AIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGR 423
            + +  N  +G+IP ++ +C+ L  L ++ N+  G IPSSL SL  + +L L  N L G 
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457

Query: 424 IPKYLENFPFLQNLNLSFNHFEGEVP 449
           IP+ L     L+ L L FN   GE+P
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIP 483

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  230 bits (589), Expect = 1e-67
 Identities = 100/371 (26%), Positives = 148/371 (39%), Gaps = 59/371 (15%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETL 60
           FN L G +P  LGSLSKLR L +  N L GEIP     + +LE L    N   G+IP  L
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486

Query: 61  SQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNL 120
           S    + ++ L  N+L+GEIP  I  L +L  + +  N   G++P++LG    +L  L+L
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDL 545

Query: 121 CRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDL 180
             N F G IPA++   S  +      N  +GK                            
Sbjct: 546 NTNLFNGTIPAAMFKQSGKIAA----NFIAGKRYV------------------------- 576

Query: 181 EFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN 240
                + N    +    + N                         +  G     L  L  
Sbjct: 577 ----YIKNDGMKKECHGAGN-----------------------LLEFQGIRSEQLNRLST 609

Query: 241 LEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLE 300
               ++    + G    +  +   +  L +  N   G IP  IG++  L  LN   N + 
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 301 GSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILK 360
           GSIP  +G  + L  L+LS+N L G IP  +  L+ L+  +DLS N L+GP+P   G  +
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT-EIDLSNNNLSGPIPEM-GQFE 727

Query: 361 NLGAIDISENK 371
                    N 
Sbjct: 728 TFPPAKFLNNP 738

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  282 bits (724), Expect = 3e-92
 Identities = 90/309 (29%), Positives = 139/309 (44%), Gaps = 14/309 (4%)

Query: 180 LEFVNSLVNASRL----ELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFG--NIPS 233
           L+    L N + L          +  + G+L +     + R+  L +    L     IPS
Sbjct: 12  LQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPS 70

Query: 234 GLRNLVNLEFLHLGG-NQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITL 292
            L NL  L FL++GG N   G IP +I  L +L  L +      G IP  +  +  L+TL
Sbjct: 71  SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130

Query: 293 NFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPL 352
           +F  N L G++P S+    NL+ +    N +SG IP      S L   + +S+N+L G +
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 353 PSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIEN 412
           P  F  L NL  +D+S N L G      GS    +++ +  N    ++   +   + +  
Sbjct: 191 PPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG 248

Query: 413 LDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGI 472
           LDL  N + G +P+ L    FL +LN+SFN+  GE+P  G        +   N  LCG  
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS- 307

Query: 473 SELHLSTCS 481
               L  C+
Sbjct: 308 ---PLPACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  200 bits (510), Expect = 2e-60
 Identities = 81/333 (24%), Positives = 129/333 (38%), Gaps = 43/333 (12%)

Query: 31  EIPSSFGNLSSL----EALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGE--IPFSI 84
           +I    GN ++L             ++G + +T +Q  R+  L L    L     IP S+
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 85  YNLSSLNYICVP-VNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLV 143
            NL  LN++ +  +N L G +P  +   L  L  L +     +G IP  +S    L+ L 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 144 IAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFG 203
            + N  SG +P                              S+ +   L  +    N   
Sbjct: 132 FSYNALSGTLPP-----------------------------SISSLPNLVGITFDGNRIS 162

Query: 204 GMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLY 263
           G +P++ G+ S     + +  N+L G IP    NL NL F+ L  N   G          
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDK 221

Query: 264 KLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNL 323
             Q++ L  N    ++   +G    L  L+   N + G++P  L + + L SLN+S NNL
Sbjct: 222 NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 324 SGTIPTEVIGLSSLSIYLDLSQNQL--NGPLPS 354
            G IP     L         + N+     PLP+
Sbjct: 281 CGEIPQGGN-LQRFD-VSAYANNKCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  196 bits (501), Expect = 4e-59
 Identities = 76/330 (23%), Positives = 116/330 (35%), Gaps = 60/330 (18%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGE--IPSSFGNLSSLEALS-ASANQFVGQIPE 58
              +G +        ++  L +   NL     IPSS  NL  L  L     N  VG IP 
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 59  TLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVL 118
            +++L ++ YL +    +SG IP  +  + +L  +    N L G+LP  +  +LPNL  +
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGI 154

Query: 119 NLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKD 178
               N+ +G IP S  + S L                                       
Sbjct: 155 TFDGNRISGAIPDSYGSFSKL--------------------------------------- 175

Query: 179 DLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNL 238
                           + IS N   G +P    NL+  L  + +  N L G+      + 
Sbjct: 176 -------------FTSMTISRNRLTGKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSD 220

Query: 239 VNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENM 298
            N + +HL  N     +   +     L  L L  N+ +G +P  +  L  L +LN   N 
Sbjct: 221 KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 299 LEGSIPSSLGKCQNLISLNLSNNNLSGTIP 328
           L G IP   G  Q       +NN      P
Sbjct: 280 LCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  158 bits (403), Expect = 8e-45
 Identities = 62/250 (24%), Positives = 98/250 (39%), Gaps = 35/250 (14%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETL 60
            N LVG +P  +  L++L  L +   N+SG IP     + +L  L  S N   G +P ++
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145

Query: 61  SQLKRMLYLLLGVNKLSGEIPFSIYNLSSL-NYICVPVNQLQGSLPSDLGFTLPNLEVLN 119
           S L  ++ +    N++SG IP S  + S L   + +  N+L G +P        NL  ++
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA--NLNLAFVD 203

Query: 120 LCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDD 179
           L RN   G       +  N  ++ +AKN  +  +                          
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG------------------------- 238

Query: 180 LEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLV 239
                 +  +  L  L + +N   G LP+ +  L   L  L V  N L G IP G  NL 
Sbjct: 239 -----KVGLSKNLNGLDLRNNRIYGTLPQGLTQL-KFLHSLNVSFNNLCGEIPQGG-NLQ 291

Query: 240 NLEFLHLGGN 249
             +      N
Sbjct: 292 RFDVSAYANN 301

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  230 bits (589), Expect = 2e-68
 Identities = 90/465 (19%), Positives = 166/465 (35%), Gaps = 23/465 (4%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETL 60
            N+L           S+L  L +  N +S   P     L  L+ L+   N+      +T 
Sbjct: 34  HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93

Query: 61  SQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNL 120
           +    +  L L  N +            +L  + +  N L  S        L NL+ L L
Sbjct: 94  AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLL 152

Query: 121 CRNQFTGPIPASISNASN--LMRLVIAKNGFSGKVP-SLKILHKLEWVGISRNHLGNGKK 177
             N+        +   +N  L +L ++ N      P     + +L  + ++   LG    
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP--- 209

Query: 178 DDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLS-TRLRILIVGNNQLFGNIPSGLR 236
              E +   +  + +  L +S++            L  T L +L +  N L         
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269

Query: 237 NLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEI---------PSSIGNLT 287
            L  LE+  L  N        S+  L+ ++ L L+ +     I           S   L 
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329

Query: 288 LLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVI--GLSSLSI-YLDLS 344
            L  LN E+N + G   +      NL  L+LSN+  S    T      L+   +  L+L+
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389

Query: 345 QNQLNGPLPSNFGILKNLGAIDISENKLSGQIP-SSIGSCTRLEQLVMNGNFFQGNIPSS 403
           +N+++      F  L +L  +D+  N++  ++          + ++ ++ N +     +S
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449

Query: 404 LSSLRGIENLDLSRNNLSG--RIPKYLENFPFLQNLNLSFNHFEG 446
            + +  ++ L L R  L      P   +    L  L+LS N+   
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  223 bits (571), Expect = 1e-65
 Identities = 93/465 (20%), Positives = 161/465 (34%), Gaps = 38/465 (8%)

Query: 12  LGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLS---QLKRMLY 68
           + + S L+ L +  N +    P  F  +  L  L  +  Q    + E L        +  
Sbjct: 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226

Query: 69  LLLGVNKLSGEIPFSIYNL--SSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFT 126
           L L  ++LS     +   L  ++L  + +  N L         + LP LE   L  N   
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQ 285

Query: 127 GPIPASISNASNLMRLVIAKNGFSGKVPSLKI----------LHKLEWVGISRNHLGNGK 176
                S+    N+  L + ++     +    +          L  LE + +  N +    
Sbjct: 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-- 343

Query: 177 KDDLEFVNSLVNASRLELLQISDNNFGGMLPEA---VGNLSTRLRILIVGNNQLFGNIPS 233
                  N       L+ L +S++            V    + L IL +  N++      
Sbjct: 344 ----IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

Query: 234 GLRNLVNLEFLHLGGNQFTGRIPGS-IVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITL 292
               L +LE L LG N+    + G     L  +  + L  NK+     +S   +  L  L
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 293 NFEENMLEG--SIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLN- 349
                 L+   S PS     +NL  L+LSNNN++      + GL  L   LDL  N L  
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-EILDLQHNNLAR 518

Query: 350 -------GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPS 402
                  G        L +L  +++  N               L+ + +  N       S
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

Query: 403 SLSSLRGIENLDLSRNNLSGRIPKYLE-NFPFLQNLNLSFNHFEG 446
             ++   +++L+L +N ++    K     F  L  L++ FN F+ 
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  219 bits (560), Expect = 4e-64
 Identities = 94/465 (20%), Positives = 158/465 (33%), Gaps = 29/465 (6%)

Query: 13  GSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLG 72
              + + +L +  N L     ++F   S L +L    N      PE   +L  +  L L 
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81

Query: 73  VNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPAS 132
            N+LS     +    ++L  + +  N +Q    +       NL  L+L  N  +     +
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV-KQKNLITLDLSHNGLSSTKLGT 140

Query: 133 ISNASNLMRLVIAKNGFSG---KVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNA 189
                NL  L+++ N       +   +     L+ + +S N +                 
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP------GCFHAI 194

Query: 190 SRLELLQISDNNFGGMLPEAVGNLS--TRLRILIVGNNQLFGNIPSGLRNL--VNLEFLH 245
            RL  L +++   G  L E +      T +R L + N+QL     +    L   NL  L 
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254

Query: 246 LGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSI-- 303
           L  N        S   L +L+   LE N        S+  L  +  LN + +  + SI  
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 304 -------PSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSN- 355
                    S    + L  LN+ +N++ G       GL +L  YL LS +  +    +N 
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK-YLSLSNSFTSLRTLTNE 373

Query: 356 ---FGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIP-SSLSSLRGIE 411
                    L  +++++NK+S     +      LE L +  N     +       L  I 
Sbjct: 374 TFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433

Query: 412 NLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSN 456
            + LS N             P LQ L L     +        F  
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  153 bits (389), Expect = 2e-40
 Identities = 64/273 (23%), Positives = 106/273 (38%), Gaps = 14/273 (5%)

Query: 191 RLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQ 250
             E+   S       L +   +L T + +L + +NQL     +       L  L +G N 
Sbjct: 5   SHEVADCSHLK----LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 251 FTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKC 310
            +   P     L  L+ L L+ N+       +    T L  L+   N ++    +   K 
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 311 QNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKN--LGAIDIS 368
           +NLI+L+LS+N LS T     + L +L   L LS N++         I  N  L  +++S
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQ-ELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 369 ENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLS---SLRGIENLDLSRNNLSGRIP 425
            N++    P    +  RL  L +N      ++   L    +   I NL LS + LS    
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

Query: 426 KYLENFPF--LQNLNLSFNHFEGEVPIKGVFSN 456
                  +  L  L+LS+N+          F+ 
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNV--VGNDSFAW 270

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  227 bits (581), Expect = 2e-67
 Identities = 90/527 (17%), Positives = 180/527 (34%), Gaps = 63/527 (11%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSG----EIPSSFGNLSSLEALSASANQFVGQIP 57
               G+VP  +G L++L +LA+  +          P       S E        +     
Sbjct: 91  FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFV 150

Query: 58  ETLS--QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNL 115
           +         ++   +  +     I  S         I    N +   +   +   L  L
Sbjct: 151 DYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVM-RLTKL 208

Query: 116 EVLNLCRNQFTGP-------------------IPASISNASNLMRLVIAKNGFSGKVP-S 155
               +  + F                            N  +L  + +       K+P  
Sbjct: 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

Query: 156 LKILHKLEWVGISRNHLGNGKKDDLEFVN--SLVNASRLELLQISDNNF-GGMLPEAVGN 212
           LK L +++ + ++ N   +G++   ++          +++++ I  NN     +  ++  
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

Query: 213 LSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEG 272
           +  +L +L    NQL G +P+   + + L  L+L  NQ T           +++ L+   
Sbjct: 329 M-KKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386

Query: 273 NKFWGEIPS--SIGNLTLLITLNFEENMLEG-------SIPSSLGKCQNLISLNLSNNNL 323
           NK    IP+     +++++  ++F  N +          +  +  K  N+ S+NLSNN +
Sbjct: 387 NKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445

Query: 324 SGTIPTEVIGLSSLSIYLDLSQNQLNG-------PLPSNFGILKNLGAIDISENKLSGQI 376
           S          S LS  ++L  N L             NF     L +ID+  NKL+  +
Sbjct: 446 SKFPKELFSTGSPLS-SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-L 503

Query: 377 PSSI--GSCTRLEQLVMNGNFFQGNIPSSLSSLRGIE------NLDLSRNNLSGRIPKYL 428
                  +   L  + ++ N F    P+   +   ++        D   N      P+ +
Sbjct: 504 SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562

Query: 429 ENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISEL 475
              P L  L +  N        + +  N S + I  N N+   +S +
Sbjct: 563 TLCPSLTQLQIGSNDIRK--VNEKITPNISVLDIKDNPNISIDLSYV 607

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  217 bits (554), Expect = 1e-63
 Identities = 69/497 (13%), Positives = 146/497 (29%), Gaps = 55/497 (11%)

Query: 1   FNELVGKVPGKLG--SLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPE 58
                            S L    ++ +     I  S         +   +N     + +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK 200

Query: 59  TLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVL 118
            + +L ++    +G +    E     +   +  Y      Q   +        L +L  +
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWD-NLKDLTDV 254

Query: 119 NLCRNQFTGPIPASISNASNLMRLVIAKNGFSG---------KVPSLKILHKLEWVGISR 169
            +        +P  +     +  + +A N              +    +  K++ + I  
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314

Query: 170 NHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFG 229
           N+L     +      SL    +L +L+   N   G    A G+   +L  L +  NQ+  
Sbjct: 315 NNLKTFPVE-----TSLQKMKKLGMLECLYNQLEG-KLPAFGSE-IKLASLNLAYNQITE 367

Query: 230 NIPSGLRNLVNLEFLHLGGNQFTGRIP--GSIVDLYKLQRLALEGNKF-------WGEIP 280
              +       +E L    N+    IP       +  +  +    N+        +  + 
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 281 SSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSG-------TIPTEVIG 333
            +      + ++N   N +             L S+NL  N L+                
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486

Query: 334 LSSLSIYLDLSQNQLNG-PLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMN 392
              L+  +DL  N+L           L  L  ID+S N  S   P+   + + L+   + 
Sbjct: 487 TYLLT-SIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544

Query: 393 ------GNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEG 446
                 GN      P  ++    +  L +  N++   + +  +  P +  L++  N    
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNE--KITPNISVLDIKDNPNIS 601

Query: 447 EVPIKGVFSNSSAISID 463
            + +  V     A    
Sbjct: 602 -IDLSYVCPYIEAGMYM 617

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  216 bits (553), Expect = 2e-63
 Identities = 78/467 (16%), Positives = 170/467 (36%), Gaps = 48/467 (10%)

Query: 12  LGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQ----IPETLSQLKRML 67
           L S  ++  L++     SG +P + G L+ LE L+  ++          P+ +S      
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 68  YLLLGVNKLSGEIPFSI--YNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQF 125
                               + S L   C+  +  Q S+      TL     +    N  
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL-KDTQIGQLSNNI 195

Query: 126 TGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNS 185
           T  +  ++   + L +  +  + F  +       ++      +  +    K +DL++ N 
Sbjct: 196 TF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE------NSEYAQQYKTEDLKWDNL 248

Query: 186 LVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQL--------FGNIPSGLRN 237
                 L  +++ +      LP  +  L   ++++ V  N+              +    
Sbjct: 249 ----KDLTDVEVYNCPNLTKLPTFLKAL-PEMQLINVACNRGISGEQLKDDWQALADAPV 303

Query: 238 LVNLEFLHLGGNQF-TGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEE 296
              ++ +++G N   T  +  S+  + KL  L    N+  G++P + G+   L +LN   
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362

Query: 297 NMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIG-LSSLSIYLDLSQNQLNG----- 350
           N +     +  G  + + +L+ ++N L           +S +S  +D S N++       
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS-AIDFSYNEIGSVDGKN 421

Query: 351 --PLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQG-------NIP 401
             PL        N+ +I++S N++S        + + L  + + GN           +  
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

Query: 402 SSLSSLRGIENLDLSRNNLSGRIPKYLE--NFPFLQNLNLSFNHFEG 446
            +  +   + ++DL  N L+  +         P+L  ++LS+N F  
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK 527

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  191 bits (487), Expect = 5e-54
 Identities = 65/453 (14%), Positives = 138/453 (30%), Gaps = 74/453 (16%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETL 60
           + +       K  +L  L  + ++      ++P+    L  ++ ++ + N+ +       
Sbjct: 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS------ 287

Query: 61  SQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQ-GSLPSDLGFTLPNLEVLN 119
                         K   +          +  I +  N L+   + + L   +  L +L 
Sbjct: 288 ----------GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ-KMKKLGMLE 336

Query: 120 LCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSL-KILHKLEWVGISRNHLGNGKKD 178
              NQ  G +P +  +   L  L +A N  +    +      ++E +  + N L      
Sbjct: 337 CLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY---- 391

Query: 179 DLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNL 238
            +  +    + S +  +  S N  G +  +                   F  +       
Sbjct: 392 -IPNIFDAKSVSVMSAIDFSYNEIGSVDGKN------------------FDPLDPTPFKG 432

Query: 239 VNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKF-------WGEIPSSIGNLTLLIT 291
           +N+  ++L  NQ +            L  + L GN           +   +  N  LL +
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492

Query: 292 LNFEENMLEGSIPS-SLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNG 350
           ++   N L              L+ ++LS N+ S   PT+ +  S+L     +   +   
Sbjct: 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK-GFGIRNQR--- 547

Query: 351 PLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGI 410
                          D   N+   + P  I  C  L QL +  N  +        ++   
Sbjct: 548 ---------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI--- 589

Query: 411 ENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNH 443
             LD+  N        Y+  +       L ++ 
Sbjct: 590 SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  184 bits (469), Expect = 1e-51
 Identities = 62/426 (14%), Positives = 139/426 (32%), Gaps = 42/426 (9%)

Query: 46  SASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQG--- 102
           +   + +  Q   +L+   R+  L L     SG +P +I  L+ L  + +  +  +    
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 103 -SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNA--SNLMRLVIAKNGFSGKVPSLKIL 159
              P  +     + E     R  +             S+L++  I  +     +     +
Sbjct: 123 LFGPKGIS-ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181

Query: 160 H-KLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLR 218
             K   +G   N++            +++  ++L    + ++ F                
Sbjct: 182 TLKDTQIGQLSNNIT-------FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE- 233

Query: 219 ILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKF--- 275
                  Q +        NL +L  + +       ++P  +  L ++Q + +  N+    
Sbjct: 234 -----YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288

Query: 276 -----WGEIPSSIGNLTLLITLNFEENML-EGSIPSSLGKCQNLISLNLSNNNLSGTIPT 329
                  +  +       +  +    N L    + +SL K + L  L    N L G +P 
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP- 347

Query: 330 EVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPS--SIGSCTRLE 387
                  L+  L+L+ NQ+     +  G  + +  +  + NKL   IP+     S + + 
Sbjct: 348 AFGSEIKLA-SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMS 405

Query: 388 QLVMNGNFFQG-------NIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLS 440
            +  + N            +  +      + +++LS N +S    +       L ++NL 
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465

Query: 441 FNHFEG 446
            N    
Sbjct: 466 GNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 93.6 bits (233), Expect = 2e-20
 Identities = 32/258 (12%), Positives = 73/258 (28%), Gaps = 56/258 (21%)

Query: 276 WGEIPS-SIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSG----TIPTE 330
           WG  P  S+ +   +  L+ E     G +P ++G+   L  L L ++          P  
Sbjct: 69  WGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKG 128

Query: 331 VIGLSSLSI-------------------------YLDLSQNQLNGPLPSNFGILKNLGAI 365
           +    S                               ++ +     +  +  I      I
Sbjct: 129 ISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQI 188

Query: 366 DISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRN------- 418
               N ++  +  ++   T+L Q  M  + F              E     +        
Sbjct: 189 GQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN 247

Query: 419 ------------NLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGND 466
                           ++P +L+  P +Q +N++ N       +K  +   +   +    
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK- 306

Query: 467 NLCGGISELHLSTCSIKE 484
                I  +++   ++K 
Sbjct: 307 -----IQIIYIGYNNLKT 319

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  212 bits (542), Expect = 4e-62
 Identities = 100/485 (20%), Positives = 173/485 (35%), Gaps = 41/485 (8%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVG-QIPET 59
            N +     G    LS L+ L     NL+       G+L +L+ L+ + N     ++PE 
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 60  LSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPV----NQLQGSLPSDLGFTLPNL 115
            S L  + +L L  NK+       +  L  +  + + +    N +    P    F    L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG--AFKEIRL 202

Query: 116 EVLNLCRNQFTGPIPA-SISNASNLMRLVIAKNGFSG----KVPSLKILHKLEWVGISRN 170
             L L  N  +  +    I   + L    +    F      +      L  L  + I   
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 171 HLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQL--- 227
            L        + ++     + +    +       +   +    +   + L + N +    
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCKFGQF 319

Query: 228 ----------------FGNIPSGLRNLVNLEFLHLGGNQ--FTGRIPGSIVDLYKLQRLA 269
                            G       +L +LEFL L  N   F G    S      L+ L 
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 270 LEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSS-LGKCQNLISLNLSNNNLSGTIP 328
           L  N     + S+   L  L  L+F+ + L+     S     +NLI L++S+ +      
Sbjct: 380 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 329 TEVIGLSSLSIYLDLSQNQLNGPLPSN-FGILKNLGAIDISENKLSGQIPSSIGSCTRLE 387
               GLSSL   L ++ N        + F  L+NL  +D+S+ +L    P++  S + L+
Sbjct: 439 GIFNGLSSLE-VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 388 QLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFP-FLQNLNLSFNHFEG 446
            L M+ N F          L  ++ LD S N++     + L++FP  L  LNL+ N F  
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

Query: 447 EVPIK 451
               +
Sbjct: 558 TCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  209 bits (533), Expect = 7e-61
 Identities = 106/484 (21%), Positives = 166/484 (34%), Gaps = 44/484 (9%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETL 60
           FN L         S  +L++L + R  +      ++ +LS L  L  + N          
Sbjct: 37  FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96

Query: 61  SQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNL 120
           S L  +  L+     L+    F I +L +L  + V  N +Q     +    L NLE L+L
Sbjct: 97  SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 121 CRNQFTGPIPASISNASNL----MRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGK 176
             N+        +     +    + L ++ N  +   P      +L  + +  N      
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNV 216

Query: 177 KDDLEFVNSLVNASRLELLQISDNNFGGM--LPEAVGNLSTRLRILIVGNNQL------F 228
                    +   + LE+ ++    F     L +   +    L  L +   +L       
Sbjct: 217 MK-----TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 229 GNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKF------------- 275
            +I      L N+    L           S    +  Q L L   KF             
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKR 329

Query: 276 ------WGEIPSSIGNLTLLITLNFEENML--EGSIPSSLGKCQNLISLNLSNNNLSGTI 327
                  G    S  +L  L  L+   N L  +G    S     +L  L+LS N +  T+
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TM 388

Query: 328 PTEVIGLSSLSIYLDLSQNQLNGPLP-SNFGILKNLGAIDISENKLSGQIPSSIGSCTRL 386
            +  +GL  L  +LD   + L      S F  L+NL  +DIS               + L
Sbjct: 389 SSNFLGLEQLE-HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 387 EQLVMNGNFFQGNI-PSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE 445
           E L M GN FQ N  P   + LR +  LDLS+  L    P    +   LQ LN+S N+F 
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 446 GEVP 449
               
Sbjct: 508 SLDT 511

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  193 bits (493), Expect = 3e-55
 Identities = 83/448 (18%), Positives = 138/448 (30%), Gaps = 27/448 (6%)

Query: 16  SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNK 75
              + L +  N L      SF +   L+ L  S  +           L  +  L+L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 76  LSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG-PIPASIS 134
           +      +   LSSL  +      L       +G  L  L+ LN+  N      +P   S
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFS 146

Query: 135 NASNLMRLVIAKNGFSGKVP-SLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLE 193
           N +NL  L ++ N         L++LH++  + +S +   N                RL 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN---FIQPGAFKEIRLH 203

Query: 194 LLQISDNNFGGMLPEAVGNLSTRLRIL------IVGNNQLFGNIPSGLRNLVNLEFLHLG 247
            L + +N     + +        L +             L     S L  L NL      
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 248 GNQ---FTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIP 304
                 +   I      L  +   +L           S         L            
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPT 321

Query: 305 SSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLN--GPLPSNFGILKNL 362
             L   + L   +    N         + L SL  +LDLS+N L+  G    +     +L
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSE-----VDLPSLE-FLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 363 GAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSS-LSSLRGIENLDLSRNNLS 421
             +D+S N +   + S+     +LE L    +  +     S   SLR +  LD+S  +  
Sbjct: 376 KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 422 GRIPKYLENFPFLQNLNLSFNHFEGEVP 449
                       L+ L ++ N F+    
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  145 bits (367), Expect = 1e-37
 Identities = 71/387 (18%), Positives = 119/387 (30%), Gaps = 46/387 (11%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLS---GEIPSSFGNLSSLEALSASANQFVGQIP 57
              L       L  L  L I       L     +I   F  L+++ + S  +        
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 58  ETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEV 117
              S      +L L   K        + +L  L +        +G         LP+LE 
Sbjct: 300 --FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEVD-LPSLEF 351

Query: 118 LNLCRNQ--FTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNG 175
           L+L RN   F G    S    ++L  L ++ NG                           
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT------------------------ 387

Query: 176 KKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGL 235
                   ++ +   +LE L    +N   M   +V      L  L + +           
Sbjct: 388 ------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 236 RNLVNLEFLHLGGNQFTGRI-PGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNF 294
             L +LE L + GN F     P    +L  L  L L   +     P++  +L+ L  LN 
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 295 EENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPS 354
             N              +L  L+ S N++  +   E+    S   +L+L+QN        
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

Query: 355 N--FGILKNLGAIDISENKLSGQIPSS 379
                 +K+   + +   ++    PS 
Sbjct: 562 QSFLQWIKDQRQLLVEVERMECATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  135 bits (343), Expect = 2e-34
 Identities = 56/279 (20%), Positives = 96/279 (34%), Gaps = 13/279 (4%)

Query: 212 NLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE 271
           NL    + L +  N L         +   L+ L L   +      G+   L  L  L L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 272 GNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEV 331
           GN        +   L+ L  L   E  L       +G  + L  LN+++N +      E 
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 332 IGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGA----IDISENKLSGQIPSSIGSCTRLE 387
               +   +LDLS N++     ++  +L  +      +D+S N ++  I        RL 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLH 203

Query: 388 QLVMNGNFFQGNIPS-SLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNL-NLSFNHFE 445
           +L +  NF   N+    +  L G+E   L              +   L+ L NL+   F 
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 446 GEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTCSIKE 484
                   + +     I    N    +S   L + +I+ 
Sbjct: 264 LA------YLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 98.9 bits (247), Expect = 3e-22
 Identities = 35/195 (17%), Positives = 74/195 (37%), Gaps = 14/195 (7%)

Query: 302 SIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKN 361
            IP +L    +  +L+LS N L             L   LDLS+ ++       +  L +
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQ-VLDLSRCEIQTIEDGAYQSLSH 77

Query: 362 LGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL- 420
           L  + ++ N +      +    + L++LV             +  L+ ++ L+++ N + 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 421 SGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTC 480
           S ++P+Y  N   L++L+LS N  +                +     +      L LS  
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCT----------DLRVLHQMPLLNLSLDLSLN 187

Query: 481 SIKESKQSRSRSLKL 495
            +   +    + ++L
Sbjct: 188 PMNFIQPGAFKEIRL 202

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  195 bits (497), Expect = 1e-55
 Identities = 92/459 (20%), Positives = 161/459 (35%), Gaps = 24/459 (5%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETL 60
              +       L +   L  L +  N++S            L+ L    N       E +
Sbjct: 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173

Query: 61  SQLK--RMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGF-TLPNLEV 117
           S L+    L L L  N ++  I    ++ +    +     Q    +   L   T+ +L +
Sbjct: 174 SSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232

Query: 118 LNLCRNQFTGPIPASISN--ASNLMRLVIAKNGFSGKVP-SLKILHKLEWVGISRNHLGN 174
                       PA        ++  + + K+ F      +      L+ + ++  HL  
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS- 291

Query: 175 GKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSG 234
                 E  + LV  S L+ L +S N F  +   +  N    L  L +  N     + +G
Sbjct: 292 ------ELPSGLVGLSTLKKLVLSANKFENLCQISASNF-PSLTHLSIKGNTKRLELGTG 344

Query: 235 -LRNLVNLEFLHLGGNQFT--GRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLIT 291
            L NL NL  L L  +           + +L  LQ L L  N+       +      L  
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

Query: 292 LNFEENMLEGSIP-SSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL-- 348
           L+     L+     S       L  LNLS++ L  +      GL +L  +L+L  N    
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-QHLNLQGNHFPK 463

Query: 349 -NGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSL 407
            N    ++   L  L  + +S   LS     +  S   +  + ++ N    +   +LS L
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523

Query: 408 RGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEG 446
           +GI  L+L+ N++S  +P  L      + +NL  N  + 
Sbjct: 524 KGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  190 bits (484), Expect = 7e-54
 Identities = 84/460 (18%), Positives = 154/460 (33%), Gaps = 23/460 (5%)

Query: 8   VPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRML 67
           +PG L   +    L    N L     ++F  L +L  L  +  Q      +T     R+ 
Sbjct: 27  IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84

Query: 68  YLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG 127
            L+L  N L      ++    +L ++      +       L      LE L L  N  + 
Sbjct: 85  TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN-QKTLESLYLGSNHISS 143

Query: 128 PIPASISNASNLMRLVIAKNGFSG-KVPSLKILHKLEWV--GISRNHLGNGKKDDLEFVN 184
                      L  L    N         +  L +   +   ++ N +            
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-------GIEP 196

Query: 185 SLVNASRLELLQISDNNFGGMLPEAVGNLS-TRLRILIVGNNQLFGNIPSGLRNL--VNL 241
              +++  + L         ++ + + N +   L +    +       P+    L  +++
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256

Query: 242 EFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEG 301
           E ++L  + F      +      LQ L L       E+PS +  L+ L  L    N  E 
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFEN 315

Query: 302 SIPSSLGKCQNLISLNLSNNNLSGTIPTEVI-GLSSLSIYLDLSQNQLN--GPLPSNFGI 358
               S     +L  L++  N     + T  +  L +L   LDLS + +            
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR-ELDLSHDDIETSDCCNLQLRN 374

Query: 359 LKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIP-SSLSSLRGIENLDLSR 417
           L +L ++++S N+       +   C +LE L +     +     S   +L  ++ L+LS 
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

Query: 418 NNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIK-GVFSN 456
           + L     +  +  P LQ+LNL  NHF      K      
Sbjct: 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.1 bits (198), Expect = 4e-16
 Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 6/146 (4%)

Query: 315 SLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSG 374
           + N  N  L+  IP     L + +  L+ S N L     + F  L NL  +D++  ++  
Sbjct: 16  TYNCENLGLN-EIPG---TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 375 QIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFL 434
               +  S  RL+ LV+  N       ++LS  + +++L   +  +S      L N   L
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 435 QNLNLSFNHFEGEVPIKGVFSNSSAI 460
           ++L L  NH             +  +
Sbjct: 132 ESLYLGSNHISS--IKLPKGFPTEKL 155

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  185 bits (471), Expect = 6e-51
 Identities = 68/454 (14%), Positives = 142/454 (31%), Gaps = 47/454 (10%)

Query: 23  MHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPF 82
              +    +      N   +  LS +     G++P+ + QL  +  L  G +  +     
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365

Query: 83  SIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFT-----GPIPASISNAS 137
                 + +      ++++             L + +L ++         PI      + 
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425

Query: 138 NLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQI 197
              ++    N  +    +++ L KL+ +  + +                  A   E    
Sbjct: 426 KDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF-----------TYDNIAVDWEDANS 474

Query: 198 SDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTG---- 253
                      +  NL   L  + + N      +P  L +L  L+ L++  N+       
Sbjct: 475 DYAKQYENEELSWSNL-KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL 533

Query: 254 -----RIPGSIVDLYKLQRLALEGNKFWGEIPSS--IGNLTLLITLNFEENMLEGSIPSS 306
                R+        K+Q   +  N    E P+S  +  +  L  L+   N +      +
Sbjct: 534 KADWTRLADDEDTGPKIQIFYMGYNNL-EEFPASASLQKMVKLGLLDCVHNKV--RHLEA 590

Query: 307 LGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI--LKNLGA 364
            G    L  L L  N +   IP +    +     L  S N+L   +P+ F    +  +G+
Sbjct: 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGS 648

Query: 365 IDISENKLSGQIPS-----SIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNN 419
           +D S NK+  +  +               + ++ N  Q       ++   I  + LS N 
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 420 LS-------GRIPKYLENFPFLQNLNLSFNHFEG 446
           ++              +N   L  ++L FN    
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  179 bits (455), Expect = 8e-49
 Identities = 69/504 (13%), Positives = 145/504 (28%), Gaps = 114/504 (22%)

Query: 8   VPGKLGSLSKLRILAMHRNNLSG-------------------EIPSSFGNLSSLEALSAS 48
           +   +  L+KL+I+    +  +                        S+ NL  L  +   
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 49  ANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDL 108
               + Q+P+ L  L  +  L +  N+          + +               L  D 
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGIS-AAQLKADWT--------------RLADDE 544

Query: 109 GFTLPNLEVLNLCRNQFTG-PIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGI 167
             T P +++  +  N     P  AS+     L  L    N     + +     KL  + +
Sbjct: 545 D-TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKL 602

Query: 168 SRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQL 227
             N +                                 +PE     + ++  L   +N+L
Sbjct: 603 DYNQIEE-------------------------------IPEDFCAFTDQVEGLGFSHNKL 631

Query: 228 FGNIPS--GLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGN 285
              IP+    +++  +  +    N+           +                       
Sbjct: 632 -KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM-------------------DDYK 671

Query: 286 LTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLS-------GTIPTEVIGLSSLS 338
                T+    N ++            + ++ LSNN ++                   L+
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731

Query: 339 IYLDLSQNQLNG-PLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQL------VM 391
             +DL  N+L           L  L  +D+S N  S   P+   + ++L+          
Sbjct: 732 -TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA 789

Query: 392 NGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIK 451
            GN      P+ +++   +  L +  N++   + + L   P L  L+++ N     + + 
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNI-SIDVT 845

Query: 452 GVFSNSSAISI----DGNDNLCGG 471
            V     A       D   ++ G 
Sbjct: 846 SVCPYIEAGMYVLLYDKTQDIRGC 869

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  176 bits (447), Expect = 9e-48
 Identities = 59/391 (15%), Positives = 131/391 (33%), Gaps = 41/391 (10%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVG------ 54
           + +          +L  L  + ++      ++P    +L  L++L+ + N+ +       
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 55  ---QIPETLSQLKRMLYLLLGVNKLSG-EIPFSIYNLSSLNYICVPVNQLQGSLPSDLGF 110
              ++ +      ++    +G N L       S+  +  L  +    N++        G 
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFG- 592

Query: 111 TLPNLEVLNLCRNQFTGPIPASI-SNASNLMRLVIAKNGFSG--KVPSLKILHKLEWVGI 167
           T   L  L L  NQ    IP    +    +  L  + N       + + K ++ +  V  
Sbjct: 593 TNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF 651

Query: 168 SRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQL 227
           S N +G+  ++    ++          + +S N       E      + +  +I+ NN +
Sbjct: 652 SYNKIGSEGRNISCSMDDY-KGINASTVTLSYNEIQKFPTELFATG-SPISTIILSNNLM 709

Query: 228 -------FGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIV--DLYKLQRLALEGNKFWGE 278
                          +N   L  + L  N+ T  +        L  L  + +  N F   
Sbjct: 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCF-SS 767

Query: 279 IPSSIGNLTLLITLNFEE------NMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVI 332
            P+   N + L             N +    P+ +  C +LI L + +N++   +  ++ 
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL- 825

Query: 333 GLSSLSIYLDLSQNQL-NGPLPSNFGILKNL 362
               L   LD++ N   +  + S    ++  
Sbjct: 826 -TPQLY-ILDIADNPNISIDVTSVCPYIEAG 854

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  172 bits (438), Expect = 2e-46
 Identities = 69/462 (14%), Positives = 136/462 (29%), Gaps = 29/462 (6%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETL 60
             E    +       +    L            ++  +  +    +   + +  Q    L
Sbjct: 261 LKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWN-FNKELDMWGDQPGVDL 319

Query: 61  SQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNL 120
               R+  L L      G +P +I  L+ L  +    +    S        L        
Sbjct: 320 DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 121 CRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDL 180
                       +     L    + ++  + + P +K + K   + +    +GN      
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAIN-RNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 181 EFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN 240
               ++   ++L+++  +++ F                       + + N      NL +
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWSNLKD 492

Query: 241 LEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKF---------WGEIPSSIGNLTLLIT 291
           L  + L       ++P  + DL +LQ L +  N+          W  +         +  
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 292 LNFEENMLEGSIPS-SLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNG 350
                N LE    S SL K   L  L+  +N +             L+  L L  NQ+  
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLT-DLKLDYNQIEE 609

Query: 351 PLPSNFGILKNLGAIDISENKLSGQIPS--SIGSCTRLEQLVMNGNFFQG---NIPSSLS 405
                      +  +  S NKL   IP+  +  S   +  +  + N       NI  S+ 
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668

Query: 406 SLRGI--ENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE 445
             +GI    + LS N +     +       +  + LS N   
Sbjct: 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  158 bits (402), Expect = 9e-42
 Identities = 57/350 (16%), Positives = 108/350 (30%), Gaps = 22/350 (6%)

Query: 112 LPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNH 171
              +  L+L      G +P +I   + L  L    +  +     L    +L         
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV-SGRLFGDEELTPDMSEERK 380

Query: 172 LGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNI 231
                     F++     +  +LLQ + N    M P    +  +     I         I
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440

Query: 232 PSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLIT 291
              ++ L  L+ ++   + FT             +    +  K +     S  NL  L  
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYDNIAVD-----WEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 292 LNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSG---------TIPTEVIGLSSLSIYLD 342
           +          +P  L     L SLN++ N              +  +      + I   
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI-FY 554

Query: 343 LSQNQLNG-PLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIP 401
           +  N L   P  ++   +  LG +D   NK+      + G+  +L  L ++ N  +    
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPE 612

Query: 402 SSLSSLRGIENLDLSRNNLSGRIPKYLE--NFPFLQNLNLSFNHFEGEVP 449
              +    +E L  S N L   IP      +   + +++ S+N    E  
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGR 661

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  109 bits (274), Expect = 2e-25
 Identities = 38/265 (14%), Positives = 82/265 (30%), Gaps = 16/265 (6%)

Query: 225 NQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIG 284
           +         L N   +  L L G    GR+P +I  L +L+ L+   +           
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 285 NLTLLITLNFEENMLEGSIPS-SLGKCQNLISLNLSNNNLSG----TIPTEVIGLSSLSI 339
                      ++ +        L   Q L   +L  + ++         +   +S    
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

Query: 340 YLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGN 399
            +    N++   +      L  L  I  + +  +             E    +      N
Sbjct: 429 QIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYEN 482

Query: 400 IPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSA 459
              S S+L+ + +++L       ++P +L + P LQ+LN++ N                A
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS-AAQLKADWTRLA 541

Query: 460 ISIDGNDNLCGGISELHLSTCSIKE 484
              D    +       ++   +++E
Sbjct: 542 DDEDTGPKI----QIFYMGYNNLEE 562

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 15/147 (10%), Positives = 42/147 (28%), Gaps = 1/147 (0%)

Query: 329 TEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQ 388
            +   L ++   LD    +      +N     N    +   +    Q    + +  R+  
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWN-FNKELDMWGDQPGVDLDNNGRVTG 327

Query: 389 LVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEV 448
           L + G   +G +P ++  L  ++ L    ++ +     + +            +      
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387

Query: 449 PIKGVFSNSSAISIDGNDNLCGGISEL 475
               +  +      D   +      E+
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEM 414

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  177 bits (450), Expect = 5e-49
 Identities = 90/462 (19%), Positives = 162/462 (35%), Gaps = 35/462 (7%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSG-EIPSSFGNLSSLEALSASANQFVGQIPET 59
             +L       +G L  L+ L +  N +   ++P+ F NL++L  +  S N         
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172

Query: 60  LSQLKRM----LYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNL 115
           L  L+      L L + +N +   I    +    L+ + +  N    ++       L  L
Sbjct: 173 LQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGL 231

Query: 116 EVLNLCRNQFTGPIPASISNASNLMRLVIAK---------NGFSGKVPSLKILHKLEWVG 166
            V  L   +F       I   S +  L             N FS  +     L  +  + 
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291

Query: 167 ISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQ 226
           ++   +        +++  +    + + L I            +  L    + L +  N+
Sbjct: 292 LAGVSI--------KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFL----KSLTLTMNK 339

Query: 227 LFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLY--KLQRLALEGNKFWGEIPSSIG 284
              +I      L +L +L L  N  +     S  DL    L+ L L  N     + ++  
Sbjct: 340 G--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFM 396

Query: 285 NLTLLITLNFEENMLEGSIP-SSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDL 343
            L  L  L+F+ + L+     S+    + L+ L++S  N         +GL+SL+  L +
Sbjct: 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN-TLKM 455

Query: 344 SQNQLNGPLPSN-FGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPS 402
           + N       SN F    NL  +D+S+ +L         +  RL+ L M+ N       S
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515

Query: 403 SLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHF 444
             + L  +  LD S N +             L   NL+ N  
Sbjct: 516 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  174 bits (442), Expect = 6e-48
 Identities = 86/455 (18%), Positives = 153/455 (33%), Gaps = 17/455 (3%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETL 60
           FN L         + S+L+ L + R  +      ++  L  L  L  + N      P + 
Sbjct: 41  FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100

Query: 61  SQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNL 120
           S L  +  L+    KL+    F I  L +L  + V  N +           L NL  ++L
Sbjct: 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160

Query: 121 CRNQFTGPIPASISNASNL----MRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGK 176
             N         +          + L ++ N             KL  + +  N   +  
Sbjct: 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNI 220

Query: 177 KDDLEFVNSLVNASRLELLQISDNNFGGMLPEAV--GNLSTRLRILIVGNNQLFGNIPSG 234
                   + ++  RL L +  D     +   ++  G     +    +     F +    
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280

Query: 235 LRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNF 294
              L N+  + L G          +   +K Q L++   +   + P+   +L  L +L  
Sbjct: 281 FHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQL-KQFPTL--DLPFLKSLTL 335

Query: 295 EENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSI-YLDLSQNQLNGPLP 353
             N    SI        +L  L+LS N LS +       L + S+ +LDLS N     + 
Sbjct: 336 TMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS 392

Query: 354 SNFGILKNLGAIDISENKLSGQIP-SSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIEN 412
           +NF  L+ L  +D   + L      S+  S  +L  L ++    + +       L  +  
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452

Query: 413 LDLSRNNLSGRIPKY-LENFPFLQNLNLSFNHFEG 446
           L ++ N+           N   L  L+LS    E 
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  125 bits (315), Expect = 8e-31
 Identities = 68/404 (16%), Positives = 130/404 (32%), Gaps = 32/404 (7%)

Query: 68  YLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG 127
            + L  N L     +S  N S L ++ +   +++          L +L  L L  N    
Sbjct: 36  NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH-GLHHLSNLILTGNPIQS 94

Query: 128 PIPASISNASNLMRLVIAKNGFSG-KVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSL 186
             P S S  ++L  LV  +   +  +   +  L  L+ + ++ N +        +     
Sbjct: 95  FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI-----HSCKLPAYF 149

Query: 187 VNASRLELLQISDNNFGGMLPEA---VGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEF 243
            N + L  + +S N    +       +         L +  N +   I       + L  
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHE 208

Query: 244 LHLGGNQFTGRIP-GSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLL--------ITLNF 294
           L L GN  +  I    + +L  L    L   +F  E    I   +++             
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 295 EENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPS 354
                            N+ +++L+  ++      +V         L + + QL      
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQS-LSIIRCQLKQFPTL 325

Query: 355 NFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRG--IEN 412
           +   LK+L    ++ NK S  I     +   L  L ++ N    +   S S L    + +
Sbjct: 326 DLPFLKSL---TLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380

Query: 413 LDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSN 456
           LDLS N     +         LQ+L+   +  +        F +
Sbjct: 381 LDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEF-SAFLS 422

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  121 bits (306), Expect = 1e-29
 Identities = 63/358 (17%), Positives = 108/358 (30%), Gaps = 32/358 (8%)

Query: 103 SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVP-SLKILHK 161
            +P D+     + + ++L  N        S SN S L  L +++         +   LH 
Sbjct: 25  KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 81

Query: 162 LEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILI 221
           L  + ++ N + +          S    + LE L   +     +    +G L   L+ L 
Sbjct: 82  LSNLILTGNPIQSFSPG------SFSGLTSLENLVAVETKLASLESFPIGQL-ITLKKLN 134

Query: 222 VGNNQLFG-NIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDL----YKLQRLALEGNKFW 276
           V +N +    +P+   NL NL  + L  N         +  L         L +  N   
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI- 193

Query: 277 GEIPSSIGNLTLLITLNFEENMLEGSIPS-SLGKCQNLISLNLSNNNLSGTIPTEVIGLS 335
             I         L  L    N    +I    L     L    L           E+   S
Sbjct: 194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253

Query: 336 SLS-------IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQ 388
            +            L+           F  L N+ A+ ++   +       +    + + 
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQS 311

Query: 389 LVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEG 446
           L +     +      L  L+   +L L+ N  S  I       P L  L+LS N    
Sbjct: 312 LSIIRCQLKQFPTLDLPFLK---SLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSF 364

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  121 bits (305), Expect = 1e-29
 Identities = 52/259 (20%), Positives = 89/259 (34%), Gaps = 14/259 (5%)

Query: 212 NLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE 271
           ++ +  + + +  N L         N   L++L L   +       +   L+ L  L L 
Sbjct: 29  DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 272 GNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSG-TIPTE 330
           GN      P S   LT L  L   E  L       +G+   L  LN+++N +    +P  
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 331 VIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGA----IDISENKLSGQIPSSIGSCTRL 386
              L++L  ++DLS N +     ++   L+        +D+S N +   I        +L
Sbjct: 149 FSNLTNLV-HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKL 206

Query: 387 EQLVMNGNFFQGNIP-------SSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNL 439
            +L + GNF   NI        + L   R I        NL    P  +E    +     
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 440 SFNHFEGEVPIKGVFSNSS 458
              +          F   +
Sbjct: 267 RLTYTNDFSDDIVKFHCLA 285

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  151 bits (384), Expect = 3e-40
 Identities = 86/458 (18%), Positives = 156/458 (34%), Gaps = 26/458 (5%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQF-VGQIPET 59
            N +     G    LS L+ L     NL+       G+L +L+ L+ + N     ++PE 
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 60  LSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPV----NQLQGSLPSDLGFTLPNL 115
            S L  + +L L  NK+       +  L  +  + + +    N +   +     F    L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGA-FKEIRL 202

Query: 116 EVLNLCRNQFTGPIPA-SISNASNLMRLVIAKNGFSG----KVPSLKILHKLEWVGISRN 170
             L L  N  +  +    I   + L    +    F      +      L  L  + I   
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 171 HLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGN 230
            L        + ++     + +    +       +   +       L ++     Q    
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL 322

Query: 231 IPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNK--FWGEIPSSIGNLTL 288
                  L +L+ L    N+       S VDL  L+ L L  N   F G    S    T 
Sbjct: 323 ------KLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 289 LITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEV-IGLSSLSIYLDLSQNQ 347
           L  L+   N +  ++ S+    + L  L+  ++NL       V + L +L IYLD+S   
Sbjct: 375 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTH 432

Query: 348 LNGPLPSNFGILKNLGAIDISENKLSGQIPSSI-GSCTRLEQLVMNGNFFQGNIPSSLSS 406
                   F  L +L  + ++ N         I      L  L ++    +   P++ +S
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 407 LRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHF 444
           L  ++ L+++ N L        +    LQ + L  N +
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  135 bits (343), Expect = 1e-34
 Identities = 88/457 (19%), Positives = 151/457 (33%), Gaps = 32/457 (7%)

Query: 16  SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNK 75
              + L +  N L      SF +   L+ L  S  +           L  +  L+L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 76  LSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFT-GPIPASIS 134
           +      +   LSSL  +      L  SL +     L  L+ LN+  N      +P   S
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 135 NASNLMRLVIAKNGFSG-KVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNAS-RL 192
           N +NL  L ++ N         L++LH++  + +S +   N     + F+        RL
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN----PMNFIQPGAFKEIRL 202

Query: 193 ELLQISDNNFGGMLPEAVGNLSTRLRIL------IVGNNQLFGNIPSGLRNLVNLEFLHL 246
             L + +N     + +        L +             L     S L  L NL     
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 247 GGNQ---FTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSI-GNLTLLITLNFEENMLEGS 302
                  +   I      L  +   +L           S       L  +N +       
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF--- 319

Query: 303 IPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLN--GPLPSNFGILK 360
                 K ++L  L  ++N          + L SL  +LDLS+N L+  G    +     
Sbjct: 320 ---PTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLE-FLDLSRNGLSFKGCCSQSDFGTT 373

Query: 361 NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSS-LSSLRGIENLDLSRNN 419
           +L  +D+S N +   + S+     +LE L    +  +     S   SLR +  LD+S  +
Sbjct: 374 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 420 LSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSN 456
                         L+ L ++ N F+       +F+ 
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PDIFTE 468

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  101 bits (253), Expect = 5e-23
 Identities = 52/246 (21%), Positives = 88/246 (35%), Gaps = 14/246 (5%)

Query: 212 NLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE 271
           NL    + L +  N L         +   L+ L L   +      G+   L  L  L L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 272 GNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNL-SGTIPTE 330
           GN        +   L+ L  L   E  L       +G  + L  LN+++N + S  +P  
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 331 VIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGA----IDISENKLSGQIPSSIGSCTRL 386
              L++L  +LDLS N++     ++  +L  +      +D+S N ++  I        RL
Sbjct: 145 FSNLTNLE-HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRL 202

Query: 387 EQLVMNGNFFQGNIP-------SSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNL 439
            +L +  NF   N+        + L   R +     +  NL       LE    L     
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 440 SFNHFE 445
              + +
Sbjct: 263 RLAYLD 268

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 91.3 bits (227), Expect = 1e-19
 Identities = 62/352 (17%), Positives = 106/352 (30%), Gaps = 37/352 (10%)

Query: 7   KVPGKLGSLSKLRILAMHRNNLSGEIPS-SFGNLSSLEALSASANQFVGQI------PET 59
            +        +L  L +  N  S  +       L+ LE       +F  +          
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 60  LSQLKRMLYLLLGVNKLSG---EIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLE 116
           L  L  +      +  L     +I      L++++   +    ++        F   +LE
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 117 VLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGK 176
           ++N    QF            +L RL    N       S   L  LE++ +SRN L    
Sbjct: 311 LVNCKFGQFPT------LKLKSLKRLTFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 177 KDDLEFVN-------------------SLVNASRLELLQISDNNFGGMLPEAVGNLSTRL 217
                                      + +   +LE L    +N   M   +V      L
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 218 RILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRI-PGSIVDLYKLQRLALEGNKFW 276
             L + +             L +LE L + GN F     P    +L  L  L L   +  
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 277 GEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIP 328
              P++  +L+ L  LN   N L+        +  +L  + L  N    + P
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  147 bits (373), Expect = 5e-38
 Identities = 92/487 (18%), Positives = 172/487 (35%), Gaps = 46/487 (9%)

Query: 9   PGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQF--VGQIPETLSQLKRM 66
                +L  LRIL +  + +    P +F  L  L  L                   LK +
Sbjct: 66  KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125

Query: 67  LYLLLGVNKLSG-EIPFSIYNLSSLNYICVPVNQLQGSLPSDL-GFTLPNLEVLNLCRNQ 124
             L L  N++    +  S   L+SL  I    NQ+      +L       L   +L  N 
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

Query: 125 FTGPIPASISNASN------LMRLVIAKNGFSGKVP-------------SLKILHKLEWV 165
               +        N      L  L ++ NG++  +              SL + H +   
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245

Query: 166 GISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNN 225
           G   +++ +  ++    +      S +  L +S      +       L   L++L +  N
Sbjct: 246 GFGFHNIKDPDQNTFAGLAR----SSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYN 300

Query: 226 QLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGN 285
           ++          L NL+ L+L  N        +   L K+  + L+ N        +   
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 286 LTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQ 345
           L  L TL+  +N L     +++    ++  + LS N L  T+P   +  +     + LS+
Sbjct: 361 LEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLV-TLPKINLTAN----LIHLSE 410

Query: 346 NQLNGPLPSNFGI-LKNLGAIDISENKLSG-QIPSSIGSCTRLEQLVMNGNFFQGNIPSS 403
           N+L       F + + +L  + +++N+ S      +      LEQL +  N  Q    + 
Sbjct: 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470

Query: 404 L-----SSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSS 458
           L       L  ++ L L+ N L+   P    +   L+ L+L+ N     +    + +N  
Sbjct: 471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLE 529

Query: 459 AISIDGN 465
            + I  N
Sbjct: 530 ILDISRN 536

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  128 bits (323), Expect = 1e-31
 Identities = 99/495 (20%), Positives = 175/495 (35%), Gaps = 57/495 (11%)

Query: 19  RILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSG 78
           RI      NL+ ++P     L++ E L  S N        +   L+++  L LG      
Sbjct: 7   RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 79  EIPF-SIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPI--PASISN 135
            I   +  NL +L  + +  +++   L  D    L +L  L L     +  +       N
Sbjct: 63  TIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121

Query: 136 ASNLMRLVIAKNGFS--GKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLE 193
              L RL ++KN        PS   L+ L+ +  S N +    + +LE +        L 
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK----TLS 177

Query: 194 LLQISDNNFGGMLPEAVGNL-----STRLRILIVGNNQLFGNIPSGLRNLV--------- 239
              ++ N+    +    G       +  L IL V  N    +I     N +         
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237

Query: 240 ---NLEFLHLGGNQFTGRIPGSIVDLYK--LQRLALEGNKFWGEIPSSIGNLTLLITLNF 294
              ++     G +        +   L +  ++ L L     +         L  L  LN 
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297

Query: 295 EENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPS 354
             N +      +     NL  LNLS N L     +   GL  ++ Y+DL +N +      
Sbjct: 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA-YIDLQKNHIAIIQDQ 356

Query: 355 NFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLD 414
            F  L+ L  +D+ +N L     ++I     +  + ++GN        +L++      + 
Sbjct: 357 TFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINLTA----NLIH 407

Query: 415 LSRNNLSG-RIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGIS 473
           LS N L    I  +L   P LQ L L+ N F             S+ S D   +    + 
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRF-------------SSCSGDQTPSENPSLE 454

Query: 474 ELHLSTCSIKESKQS 488
           +L L    ++ + ++
Sbjct: 455 QLFLGENMLQLAWET 469

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  122 bits (307), Expect = 1e-29
 Identities = 82/452 (18%), Positives = 159/452 (35%), Gaps = 45/452 (9%)

Query: 7   KVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLS--SLEALSASANQFVGQIPETLSQLK 64
            +    G L+ L+ +    N +          L   +L   S +AN    ++     +  
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 65  RMLYLL-LGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRN 123
                + L +  +SG       N  +++      N +  S    L     ++       +
Sbjct: 199 NPFRNMVLEILDVSG-------NGWTVDITGNFSNAISKSQAFSL-ILAHHIMGAGFGFH 250

Query: 124 QFTGPIPASISN--ASNLMRLVIAKNGFSGKVPS--LKILHKLEWVGISRNHLGNGKKDD 179
               P   + +    S++  L ++       + S   + L  L+ + ++ N +     + 
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKI-----NK 304

Query: 180 LEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLV 239
           +    +      L++L +S N  G +       L  ++  + +  N +        + L 
Sbjct: 305 IAD-EAFYGLDNLQVLNLSYNLLGELYSSNFYGL-PKVAYIDLQKNHIAIIQDQTFKFLE 362

Query: 240 NLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTL-LITLNFEENM 298
            L+ L L  N  T     +I  +  +  + L GNK       ++  + L    ++  EN 
Sbjct: 363 KLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL-----VTLPKINLTANLIHLSENR 412

Query: 299 LEG-SIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSN-- 355
           LE   I   L +  +L  L L+ N  S     +    +     L L +N L     +   
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472

Query: 356 ---FGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIEN 412
              F  L +L  + ++ N L+   P      T L  L +N N       + L +   +E 
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN--LEI 530

Query: 413 LDLSRNNLSGRIPKYLENFPFLQNLNLSFNHF 444
           LD+SRN L    P   + F  L  L+++ N F
Sbjct: 531 LDISRNQLLAPNP---DVFVSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  105 bits (264), Expect = 3e-24
 Identities = 64/321 (19%), Positives = 116/321 (36%), Gaps = 24/321 (7%)

Query: 15  LSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVN 74
            S +R L +    +       F  L  L+ L+ + N+      E    L  +  L L  N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 75  KLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASIS 134
            L      + Y L  + YI +  N +   +       L  L+ L+L  N  T     +I 
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT-----TIH 378

Query: 135 NASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLEL 194
              ++  + ++ N        L  L K+     +  HL   + ++L+ +  L+    L++
Sbjct: 379 FIPSIPDIFLSGN-------KLVTLPKINLTA-NLIHLSENRLENLDILYFLLRVPHLQI 430

Query: 195 LQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGL-----RNLVNLEFLHLGGN 249
           L ++ N F     +   + +  L  L +G N L     + L       L +L+ L+L  N
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

Query: 250 QFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGK 309
                 PG    L  L+ L+L  N+    +  +      L  L+   N L    P     
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRL-TVLSHND-LPANLEILDISRNQLLAPNPDVF-- 546

Query: 310 CQNLISLNLSNNNLSGTIPTE 330
             +L  L++++N         
Sbjct: 547 -VSLSVLDITHNKFICECELS 566

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  141 bits (358), Expect = 4e-37
 Identities = 104/443 (23%), Positives = 174/443 (39%), Gaps = 42/443 (9%)

Query: 12  LGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLL 71
           +  L+ L  +    N L+   P    NL+ L  +  + NQ     P  L+ L  +  L L
Sbjct: 64  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119

Query: 72  GVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPA 131
             N+++   P    NL++LN + +  N +     S L   L +L+ L+   NQ T   P 
Sbjct: 120 FNNQITDIDPLK--NLTNLNRLELSSNTISD--ISALS-GLTSLQQLSF-GNQVTDLKP- 172

Query: 132 SISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASR 191
            ++N + L RL I+ N  S  +  L  L  LE +  + N +      D+  +  L N   
Sbjct: 173 -LANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQI-----SDITPLGILTN--- 222

Query: 192 LELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQF 251
           L+ L ++ N         + +L T L  L + NNQ+    P  L  L  L  L LG NQ 
Sbjct: 223 LDELSLNGNQLKD--IGTLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277

Query: 252 TGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQ 311
           +   P  +  L  L  L L  N+   E  S I NL  L  L    N +    P  +    
Sbjct: 278 SNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP--VSSLT 331

Query: 312 NLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENK 371
            L  L   NN +S    + +  L++++ +L    NQ++    +    L  +  + +++  
Sbjct: 332 KLQRLFFYNNKVSD--VSSLANLTNIN-WLSAGHNQISDL--TPLANLTRITQLGLNDQA 386

Query: 372 LSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENF 431
            +   P +  +   +   V N        P+++S        D++ N  S    +    F
Sbjct: 387 WTN-APVNYKANVSIPNTVKNVTGAL-IAPATISDGGSYTEPDITWNLPSY-TNEVSYTF 443

Query: 432 PFLQNLNLSFNHFEGEV--PIKG 452
                +      F G V  P+K 
Sbjct: 444 SQPVTIGKGTTTFSGTVTQPLKA 466

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  139 bits (353), Expect = 2e-36
 Identities = 112/465 (24%), Positives = 173/465 (37%), Gaps = 44/465 (9%)

Query: 12  LGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLL 71
             +L++     + + N++  +     +L  +  L A       +  + +  L  +  +  
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINF 75

Query: 72  GVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPA 131
             N+L+   P    NL+ L  I +  NQ+     + L   L NL  L L  NQ T   P 
Sbjct: 76  SNNQLTDITPLK--NLTKLVDILMNNNQIAD--ITPLA-NLTNLTGLTLFNNQITDIDP- 129

Query: 132 SISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASR 191
            + N +NL RL ++ N  S  + +L  L  L+ +                 +  L N + 
Sbjct: 130 -LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTD---------LKPLANLTT 178

Query: 192 LELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQF 251
           LE L IS N         +  L T L  LI  NNQ+  +  + L  L NL+ L L GNQ 
Sbjct: 179 LERLDISSNKVSD--ISVLAKL-TNLESLIATNNQI--SDITPLGILTNLDELSLNGNQL 233

Query: 252 TGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQ 311
                G++  L  L  L L  N+     P  +  LT L  L    N +    P  L    
Sbjct: 234 KD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT 287

Query: 312 NLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENK 371
            L +L L+ N L    P     L +L+ YL L  N ++    S    L  L  +    NK
Sbjct: 288 ALTNLELNENQLEDISPIS--NLKNLT-YLTLYFNNISDI--SPVSSLTKLQRLFFYNNK 342

Query: 372 LSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENF 431
           +S    SS+ + T +  L    N      P  L++L  I  L L+    +     Y  N 
Sbjct: 343 VSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN- 397

Query: 432 PFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELH 476
             +   N   N     +    +    S    D   NL    +E+ 
Sbjct: 398 --VSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVS 440

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  135 bits (343), Expect = 5e-35
 Identities = 95/412 (23%), Positives = 165/412 (40%), Gaps = 40/412 (9%)

Query: 41  SLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQL 100
            L + + + +  + QI  T + L   +  +LG   ++  +  +  +L  +  +      +
Sbjct: 2   PLGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI 58

Query: 101 QGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILH 160
           +      + + L NL  +N   NQ T   P  + N + L+ +++  N  +  +  L  L 
Sbjct: 59  KS--IDGVEY-LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITPLANLT 112

Query: 161 KLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRIL 220
            L  + +  N +      D++ + +L N   L  L++S N        A+  L T L+ L
Sbjct: 113 NLTGLTLFNNQIT-----DIDPLKNLTN---LNRLELSSNTISD--ISALSGL-TSLQQL 161

Query: 221 IVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIP 280
             GN          L NL  LE L +  N+ +      +  L  L+ L    N+     P
Sbjct: 162 SFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 216

Query: 281 SSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIY 340
             +G LT L  L+   N L+     +L    NL  L+L+NN +S   P  + GL+ L   
Sbjct: 217 --LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKL-TE 269

Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
           L L  NQ++    S    L  L  ++++EN+L     S I +   L  L +  N      
Sbjct: 270 LKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS 325

Query: 401 PSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKG 452
           P  +SSL  ++ L    N +S      L N   +  L+   N      P+  
Sbjct: 326 P--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLAN 373

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (349), Expect = 8e-37
 Identities = 78/364 (21%), Positives = 143/364 (39%), Gaps = 33/364 (9%)

Query: 58  ETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEV 117
              + L   +  +L    ++  +      L S+  + V   ++       + + L NLE 
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVAS--IQGIEY-LTNLEY 70

Query: 118 LNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKK 177
           LNL  NQ T   P  +SN   L  L I  N  +  + +L+ L  L  + ++ +++     
Sbjct: 71  LNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISALQNLTNLRELYLNEDNI----- 122

Query: 178 DDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRN 237
            D+  + +L     +  L +  N+        + N+ T L  L V  +++     + + N
Sbjct: 123 SDISPLANLTK---MYSLNLGANHNLS-DLSPLSNM-TGLNYLTVTESKV--KDVTPIAN 175

Query: 238 LVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEEN 297
           L +L  L L  NQ     P  +  L  L       N+      + + N+T L +L    N
Sbjct: 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQI--TDITPVANMTRLNSLKIGNN 231

Query: 298 MLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFG 357
            +    P  L     L  L +  N +S      V  L+ L   L++  NQ++    S   
Sbjct: 232 KITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLK-MLNVGSNQISDI--SVLN 284

Query: 358 ILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSR 417
            L  L ++ ++ N+L  +    IG  T L  L ++ N      P  L+SL  +++ D + 
Sbjct: 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFAN 342

Query: 418 NNLS 421
             + 
Sbjct: 343 QVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  132 bits (335), Expect = 8e-35
 Identities = 76/341 (22%), Positives = 136/341 (39%), Gaps = 30/341 (8%)

Query: 112 LPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNH 171
           L       L +   T  +        ++ +LV+A    +  +  ++ L  LE++ ++ N 
Sbjct: 21  LAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQGIEYLTNLEYLNLNGNQ 77

Query: 172 LGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNI 231
           + +        ++ L N  +L  L I  N        A+ NL T LR L +  + +    
Sbjct: 78  ITD--------ISPLSNLVKLTNLYIGTNKITD--ISALQNL-TNLRELYLNEDNISD-- 124

Query: 232 PSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLIT 291
            S L NL  +  L+LG N         + ++  L  L +  +K     P  I NLT L +
Sbjct: 125 ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181

Query: 292 LNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGP 351
           L+   N +E   P  L    +L       N ++   P  V  ++ L+  L +  N++   
Sbjct: 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLN-SLKIGNNKITDL 236

Query: 352 LPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIE 411
             S    L  L  ++I  N++S    +++   T+L+ L +  N       S L++L  + 
Sbjct: 237 --SPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLN 290

Query: 412 NLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKG 452
           +L L+ N L     + +     L  L LS NH     P+  
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLAS 331

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  121 bits (307), Expect = 6e-31
 Identities = 76/355 (21%), Positives = 141/355 (39%), Gaps = 43/355 (12%)

Query: 11  KLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLL 70
               L++     + + +++  +      L S+  L  +  +      + +  L  + YL 
Sbjct: 17  PDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV--ASIQGIEYLTNLEYLN 72

Query: 71  LGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIP 130
           L  N+++   P S  NL  L  + +  N++  +  S L   L NL  L L  +  +   P
Sbjct: 73  LNGNQITDISPLS--NLVKLTNLYIGTNKI--TDISALQ-NLTNLRELYLNEDNISDISP 127

Query: 131 ASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRN-----------------HLG 173
             ++N + +  L +  N     +  L  +  L ++ ++ +                  L 
Sbjct: 128 --LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLN 185

Query: 174 NGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPS 233
             + +D+  + SL +   L       N    +    V N+ TRL  L +GNN++     S
Sbjct: 186 YNQIEDISPLASLTS---LHYFTAYVNQITDI--TPVANM-TRLNSLKIGNNKI--TDLS 237

Query: 234 GLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLN 293
            L NL  L +L +G NQ +     ++ DL KL+ L +  N+      S + NL+ L +L 
Sbjct: 238 PLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLF 293

Query: 294 FEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 348
              N L       +G   NL +L LS N+++   P     LS +    D +   +
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA--SLSKMD-SADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  120 bits (304), Expect = 1e-30
 Identities = 71/313 (22%), Positives = 127/313 (40%), Gaps = 28/313 (8%)

Query: 12  LGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLL 71
           +  L+ L  L ++ N ++   P    NL  L  L    N+        L  L  +  L L
Sbjct: 62  IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYL 117

Query: 72  GVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPA 131
             + +S   P +  NL+ +  + +  N    S  S L   +  L  L +  ++     P 
Sbjct: 118 NEDNISDISPLA--NLTKMYSLNLGANHNL-SDLSPLS-NMTGLNYLTVTESKVKDVTP- 172

Query: 132 SISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASR 191
            I+N ++L  L +  N     +  L  L  L +     N +      D+  V ++     
Sbjct: 173 -IANLTDLYSLSLNYNQIED-ISPLASLTSLHYFTAYVNQI-----TDITPVANMTR--- 222

Query: 192 LELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQF 251
           L  L+I +N    +    + NL ++L  L +G NQ+  +  + +++L  L+ L++G NQ 
Sbjct: 223 LNSLKIGNNKITDL--SPLANL-SQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQI 277

Query: 252 TGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQ 311
           +      + +L +L  L L  N+   E    IG LT L TL   +N +    P  L    
Sbjct: 278 SD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333

Query: 312 NLISLNLSNNNLS 324
            + S + +N  + 
Sbjct: 334 KMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.8 bits (229), Expect = 2e-20
 Identities = 41/220 (18%), Positives = 79/220 (35%), Gaps = 16/220 (7%)

Query: 233 SGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITL 292
               +L       L     T  +     +L  + +L + G K        I  LT L  L
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV--ASIQGIEYLTNLEYL 71

Query: 293 NFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPL 352
           N   N +    P  L     L +L +  N +  T  + +  L++L   L L+++ ++   
Sbjct: 72  NLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLR-ELYLNEDNISD-- 124

Query: 353 PSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIEN 412
            S    L  + ++++  N       S + + T L  L +  +  +   P  +++L  + +
Sbjct: 125 ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181

Query: 413 LDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKG 452
           L L+ N +    P  L +   L       N      P+  
Sbjct: 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVAN 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  132 bits (335), Expect = 4e-35
 Identities = 65/344 (18%), Positives = 109/344 (31%), Gaps = 33/344 (9%)

Query: 35  SFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYIC 94
              + S  E L    +  +    + LSQ +R           +        N ++     
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIET 62

Query: 95  VPVNQLQGSLPSDLGF-TLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKV 153
                L+ +    L   T P    L L         P      S+L  + I   G     
Sbjct: 63  RTGRALK-ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLMELP 120

Query: 154 PSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNL 213
            +++    LE + ++RN L            S+ + +RL  L I        LPE + + 
Sbjct: 121 DTMQQFAGLETLTLARNPLR-------ALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 214 STRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGN 273
                                 + LVNL+ L L        +P SI +L  L+ L +  +
Sbjct: 174 D----------------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216

Query: 274 KFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIG 333
                +  +I +L  L  L+        + P   G    L  L L + +   T+P ++  
Sbjct: 217 PL-SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275

Query: 334 LSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIP 377
           L+ L   LDL        LPS    L     I +  +  +    
Sbjct: 276 LTQLE-KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  130 bits (329), Expect = 3e-34
 Identities = 47/281 (16%), Positives = 94/281 (33%), Gaps = 17/281 (6%)

Query: 172 LGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNL-STRLRILIVGNNQLFGN 230
             N  ++         N++  ++   +         + + +        L + +  L   
Sbjct: 38  HYNADRNRWHSAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPL-PQ 95

Query: 231 IPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLI 290
            P     L +L+ + +        +P ++     L+ L L  N     +P+SI +L  L 
Sbjct: 96  FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLR 153

Query: 291 TLNFEENMLEGSIPSSLGKC---------QNLISLNLSNNNLSGTIPTEVIGLSSLSIYL 341
            L+         +P  L             NL SL L    +  ++P  +  L +L   L
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS-L 211

Query: 342 DLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIP 401
            +  + L+  L      L  L  +D+         P   G    L++L++        +P
Sbjct: 212 KIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270

Query: 402 SSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFN 442
             +  L  +E LDL       R+P  +   P    + +  +
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  127 bits (322), Expect = 3e-33
 Identities = 49/291 (16%), Positives = 92/291 (31%), Gaps = 35/291 (12%)

Query: 188 NASRLELLQISDNNFGGMLPEAVGNL-------------------STRLRILIVGNNQLF 228
           ++S  E L    +       + +                      S   +I       L 
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRAL- 68

Query: 229 GNIPSGLRNL--VNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNL 286
                 L +        L L       + P     L  LQ + ++      E+P ++   
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQF 126

Query: 287 TLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSI------- 339
             L TL    N L  ++P+S+     L  L++        +P  +    +          
Sbjct: 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 340 -YLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQG 398
             L L    +   LP++   L+NL ++ I  + LS  +  +I    +LE+L + G     
Sbjct: 186 QSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR 243

Query: 399 NIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449
           N P        ++ L L   +    +P  +     L+ L+L        +P
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  120 bits (302), Expect = 2e-30
 Identities = 58/320 (18%), Positives = 106/320 (33%), Gaps = 34/320 (10%)

Query: 7   KVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRM 66
                L    +      +R +          N ++ +  + +         + L    + 
Sbjct: 27  PYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRALK-ATADLLEDATQP 81

Query: 67  --LYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQ 124
             + L L    L  + P   + LS L ++ +    L   LP  +      LE L L RN 
Sbjct: 82  GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNP 138

Query: 125 FTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVN 184
               +PASI++ + L  L I       ++P                 L +      +   
Sbjct: 139 LRA-LPASIASLNRLRELSIRACPELTELP---------------EPLAS-----TDASG 177

Query: 185 SLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFL 244
                  L+ L++        LP ++ NL   L+ L + N+ L   +   + +L  LE L
Sbjct: 178 EHQGLVNLQSLRLEWTGIRS-LPASIANL-QNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234

Query: 245 HLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIP 304
            L G       P        L+RL L+       +P  I  LT L  L+    +    +P
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

Query: 305 SSLGKCQNLISLNLSNNNLS 324
           S + +      + +  +  +
Sbjct: 295 SLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 28/204 (13%), Positives = 59/204 (28%), Gaps = 28/204 (13%)

Query: 301 GSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIY------------------LD 342
           GS            +L    +         +                           ++
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61

Query: 343 LSQNQLNGPLPSNFGILK--NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
               +                  A+++    L  Q P      + L+ + ++       +
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 401 PSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAI 460
           P ++    G+E L L+RN L   +P  + +   L+ L++       E+P + + S  ++ 
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP-EPLASTDASG 177

Query: 461 SIDGNDNLCGGISELHLSTCSIKE 484
              G  NL      L L    I+ 
Sbjct: 178 EHQGLVNL----QSLRLEWTGIRS 197

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  136 bits (345), Expect = 6e-35
 Identities = 86/455 (18%), Positives = 171/455 (37%), Gaps = 29/455 (6%)

Query: 9   PGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLY 68
            G L + + L++L +  + ++     +F +L SLE L  S N            L  + Y
Sbjct: 43  HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102

Query: 69  LLLGVNKLSG-EIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG 127
           L L  N      +     NL++L  + +   +    +       L +L  L +       
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162

Query: 128 PIPASISNASNLMRLVIAKNGFSGKVP-SLKILHKLEWVGISRNHLG--NGKKDDLEFVN 184
               S+ +  ++  L +  +  +  +     IL  + ++ +   +L         ++ V+
Sbjct: 163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVS 222

Query: 185 SLVNASRLELLQISDNNFGGMLPEAVGNLS-TRLRILIVGNNQLFGNIPSGLR------- 236
           S +         ++D +F  +L      L  + +       N L    PS          
Sbjct: 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282

Query: 237 -NLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE 295
              V +  LH+        +      L K++R+ +E +K +    S   +L  L  L+  
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342

Query: 296 ENMLEGSI---PSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLS--IYLDLSQNQLNG 350
           EN++        +  G   +L +L LS N+L  ++      L +L     LD+S+N  + 
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH- 400

Query: 351 PLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGI 410
           P+P +    + +  +++S   +   + + I     LE L ++ N    +    L  L+  
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPRLQ-- 454

Query: 411 ENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE 445
             L +SRN L   +P     FP L  + +S N  +
Sbjct: 455 -ELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  125 bits (315), Expect = 5e-31
 Identities = 81/422 (19%), Positives = 151/422 (35%), Gaps = 36/422 (8%)

Query: 8   VPGKLGSLSKLRILAMHRNNLSGEIP-SSFGNLSSLEALSASANQFVGQIPETLSQLKRM 66
           V     +L+ L+ L +       EI    F  L+SL  L   A        ++L  ++ +
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174

Query: 67  LYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFT 126
            +L L +++ +  +      LSS+ Y+ +    L                 +     + +
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGS 233

Query: 127 GPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSL 186
                S +    L+R ++              L ++E+   + N LG+    + + V+ L
Sbjct: 234 VLTDESFNELLKLLRYILE-------------LSEVEFDDCTLNGLGDFNPSESDVVSEL 280

Query: 187 --VNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEF 243
             V    +  L I        L      L  +++ + V N+++F  +P    ++L +LEF
Sbjct: 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLL-EKVKRITVENSKVF-LVPCSFSQHLKSLEF 338

Query: 244 LHLGGNQFTGRI---PGSIVDLYKLQRLALEGNKFW--GEIPSSIGNLTLLITLNFEENM 298
           L L  N                  LQ L L  N      +    +  L  L +L+   N 
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398

Query: 299 LEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI 358
               +P S    + +  LNLS+  +   + T +    +L   LD+S N L+         
Sbjct: 399 FH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLE-VLDVSNNNLDS-FSLF--- 449

Query: 359 LKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRN 418
           L  L  + IS NKL   +P +      L  + ++ N  +         L  ++ + L  N
Sbjct: 450 LPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

Query: 419 NL 420
             
Sbjct: 508 PW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  103 bits (258), Expect = 1e-23
 Identities = 56/364 (15%), Positives = 118/364 (32%), Gaps = 19/364 (5%)

Query: 98  NQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-- 155
           N++      DL     NL+VL L  ++       +  +  +L  L ++ N  S  + S  
Sbjct: 36  NKITYIGHGDLRA-CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSW 93

Query: 156 LKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLST 215
              L  L+++ +  N         L   +   N + L+ L+I +      +        T
Sbjct: 94  FGPLSSLKYLNLMGNPY-----QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148

Query: 216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKF 275
            L  L +    L       L+++ ++  L L  ++    +      L  ++ L L     
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208

Query: 276 WGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLS 335
                S +    +   +             S  +   L+   L  + +            
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE-------FDDC 261

Query: 336 SLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF 395
           +L+   D + ++ +            +  + I +  L   + +      +++++ +  + 
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 396 FQGNIPSSLSSLRGIENLDLSRNNLSGRIPKY---LENFPFLQNLNLSFNHFEGEVPIKG 452
                 S    L+ +E LDLS N +     K       +P LQ L LS NH         
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

Query: 453 VFSN 456
           +   
Sbjct: 382 ILLT 385

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 14/175 (8%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLS--GEIPSSFGNLSSLEALSASANQFVGQIPE 58
             E   K     G+   L+ L + +N+L    +       L +L +L  S N F   +P+
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPD 404

Query: 59  TLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVL 118
           +    ++M +L L    +   +   I    +L  + V  N L           LP L+ L
Sbjct: 405 SCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNL-----DSFSLFLPRLQEL 456

Query: 119 NLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHL 172
            + RN+    +P + S    L+ + I++N            L  L+ + +  N  
Sbjct: 457 YISRNKLKT-LPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  124 bits (314), Expect = 3e-31
 Identities = 96/432 (22%), Positives = 172/432 (39%), Gaps = 70/432 (16%)

Query: 14  SLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGV 73
           S + L+    H +NL+ E+P    N+ S      + +++    P    + + M    L  
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 74  NKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASI 133
                           L         L  SLP        +LE L    N  T  +P   
Sbjct: 68  CLDR--------QAHELELNN---LGLS-SLPELPP----HLESLVASCNSLT-ELPELP 110

Query: 134 SNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLE 193
            +  +L+         S   P L+ L       +S N         LE +  L N+S L+
Sbjct: 111 QSLKSLLVDNNNLKALSDLPPLLEYLG------VSNNQ--------LEKLPELQNSSFLK 156

Query: 194 LLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTG 253
           ++ + +N+    LP+   +    L  +  GNNQL   +P  L+NL  L  ++   N    
Sbjct: 157 IIDVDNNSL-KKLPDLPPS----LEFIAAGNNQL-EELPE-LQNLPFLTAIYADNNSLK- 208

Query: 254 RIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNL 313
           ++P   +    L+ +    N    E    + NL  L T+  + N+L+ ++P       +L
Sbjct: 209 KLPDLPL---SLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP---SL 259

Query: 314 ISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLS 373
            +LN+ +N L+  +P     L+     LD+S+N  +G L     +  NL  ++ S N++ 
Sbjct: 260 EALNVRDNYLT-DLPELPQSLTF----LDVSENIFSG-LSE---LPPNLYYLNASSNEIR 310

Query: 374 GQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPF 433
             +     S   LE+L ++ N     +P+    L   E L  S N+L+  +P+  +N   
Sbjct: 311 -SLCDLPPS---LEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQN--- 358

Query: 434 LQNLNLSFNHFE 445
           L+ L++ +N   
Sbjct: 359 LKQLHVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  117 bits (294), Expect = 1e-28
 Identities = 96/452 (21%), Positives = 162/452 (35%), Gaps = 80/452 (17%)

Query: 7   KVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLS-------------SLEALSASANQFV 53
           ++P +  ++          +      P   G                    L  +     
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 54  GQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLP 113
             +PE    L+    L+   N L+ E+P    +L SL      +  L   LP       P
Sbjct: 85  -SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS-DLP-------P 131

Query: 114 NLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLG 173
            LE L +  NQ    +P  + N+S L  + +  N    K+P L     LE++    N   
Sbjct: 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL--PPSLEFIAAGNNQ-- 184

Query: 174 NGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPS 233
                 LE +  L N   L  +   +N+    LP+   +L +    ++ GNN L      
Sbjct: 185 ------LEELPELQNLPFLTAIYADNNSLKK-LPDLPLSLES----IVAGNNIL--EELP 231

Query: 234 GLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLN 293
            L+NL  L  ++   N     +P        L+ L +  N    ++P    +LT L    
Sbjct: 232 ELQNLPFLTTIYADNNLLK-TLPDLPP---SLEALNVRDNYL-TDLPELPQSLTFLDVSE 286

Query: 294 FEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLP 353
              + L    P       NL  LN S+N +  ++      L      L++S N+L   LP
Sbjct: 287 NIFSGLSELPP-------NLYYLNASSNEIR-SLCDLPPSLEE----LNVSNNKLIE-LP 333

Query: 354 SNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENL 413
           +    L+ L     S N L+ ++P    +   L+QL +  N  +   P    S+      
Sbjct: 334 ALPPRLERL---IASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVE----- 380

Query: 414 DLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE 445
           DL  N+    +P+  +N   L+ L++  N   
Sbjct: 381 DLRMNSHLAEVPELPQN---LKQLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  106 bits (266), Expect = 7e-25
 Identities = 88/422 (20%), Positives = 148/422 (35%), Gaps = 71/422 (16%)

Query: 14  SLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGV 73
               L  L    N+L+ E+P    +L SL   + +       + +    L+   YL +  
Sbjct: 89  LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA----LSDLPPLLE---YLGVSN 140

Query: 74  NKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASI 133
           N+L  ++P  + N S L  I V  N L+  LP       P+LE +    NQ    +P  +
Sbjct: 141 NQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLEE-LP-EL 191

Query: 134 SNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLE 193
            N   L  +    N    K+P L     LE +    N L        E +  L N   L 
Sbjct: 192 QNLPFLTAIYADNNSLK-KLPDL--PLSLESIVAGNNIL--------EELPELQNLPFLT 240

Query: 194 LLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTG 253
            +   +N     LP+   +L      L V +N L  ++P   ++L  L+      +  + 
Sbjct: 241 TIYADNNLLK-TLPDLPPSLEA----LNVRDNYL-TDLPELPQSLTFLDVSENIFSGLS- 293

Query: 254 RIPGSIVDLY--------------KLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENML 299
            +P ++  L                L+ L +  NK   E+P+    L     L    N L
Sbjct: 294 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPPRLE---RLIASFNHL 349

Query: 300 EGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGIL 359
              +P       NL  L++  N L    P     +  L         ++N  L     + 
Sbjct: 350 A-EVPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDL---------RMNSHLAEVPELP 395

Query: 360 KNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNN 419
           +NL  + +  N L  + P    S   +E L MN          +  +   +E+     ++
Sbjct: 396 QNLKQLHVETNPLR-EFPDIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

Query: 420 LS 421
             
Sbjct: 452 HH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 91.2 bits (227), Expect = 7e-20
 Identities = 73/398 (18%), Positives = 126/398 (31%), Gaps = 80/398 (20%)

Query: 7   KVPGKLGSLSKLRILAMHRNNLSGEIPS---------------SFGNLSSLEALSASANQ 51
           ++P    SL  L +   +   LS   P                   N S L+ +    N 
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS 164

Query: 52  FVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFT 111
              ++P+    L+   ++  G N+L  E+P  + NL  L  I    N L+  LP      
Sbjct: 165 LK-KLPDLPPSLE---FIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPL-- 215

Query: 112 LPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNH 171
             +LE +    N         + N   L  +    N     +P L     LE + +  N+
Sbjct: 216 --SLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDL--PPSLEALNVRDNY 268

Query: 172 LGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNI 231
           L        +      + + L++ +   +     L E   NL      L   +N++  ++
Sbjct: 269 LT-------DLPELPQSLTFLDVSENIFSG----LSELPPNL----YYLNASSNEI-RSL 312

Query: 232 PSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLIT 291
                   +LE L++  N+    +P       +L+RL    N    E+P    NL     
Sbjct: 313 CD---LPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQNLK---Q 361

Query: 292 LNFEENMLEGSIPSSLGK----------------CQNLISLNLSNNNLSGTIPTEVIGLS 335
           L+ E N L    P                      QNL  L++  N L    P     + 
Sbjct: 362 LHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVE 419

Query: 336 SLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLS 373
                L ++  ++  P          L       +   
Sbjct: 420 ----DLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.3 bits (178), Expect = 8e-14
 Identities = 45/219 (20%), Positives = 73/219 (33%), Gaps = 41/219 (18%)

Query: 255 IPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGK----- 309
           I    V    LQ      +    E+P    N+          +  E + P   G+     
Sbjct: 3   INPRNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 310 --------CQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKN 361
                    +    L L+N  LS ++P     L S    L  S N L   LP     LK+
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLS-SLPELPPHLES----LVASCNSLT-ELPELPQSLKS 115

Query: 362 LGAIDISENKLSGQIPS---------------SIGSCTRLEQLVMNGNFFQGNIPSSLSS 406
           L   + +   LS   P                 + + + L+ + ++ N  +  +P    S
Sbjct: 116 LLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPS 174

Query: 407 LRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE 445
           L   E +    N L   +P+ L+N PFL  +    N  +
Sbjct: 175 L---EFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK 208

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  123 bits (311), Expect = 3e-31
 Identities = 72/385 (18%), Positives = 141/385 (36%), Gaps = 30/385 (7%)

Query: 98  NQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSG-KVPSL 156
            Q Q         TL N +++    +       A + +   +  L +           + 
Sbjct: 30  MQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF 89

Query: 157 KILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTR 216
              H ++ + +  N +       L   +   N   L +L +  N+   +      N   +
Sbjct: 90  AYAHTIQKLYMGFNAI-----RYLP-PHVFQNVPLLTVLVLERNDLSSLPRGIFHNT-PK 142

Query: 217 LRILIVGNNQLFGNIPSG-LRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKF 275
           L  L + NN L   I     +   +L+ L L  N+ T  +  S+  +  L    +  N  
Sbjct: 143 LTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLL 198

Query: 276 WGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLS 335
                S++     +  L+   N +   +   +     L  L L +NNL+      ++   
Sbjct: 199 -----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTAW-LLNYP 248

Query: 336 SLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF 395
            L + +DLS N+L   +   F  ++ L  + IS N+L   +         L+ L ++ N 
Sbjct: 249 GL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH 306

Query: 396 FQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFS 455
              ++  +      +ENL L  N++   +   L     L+NL LS N ++    ++ +F 
Sbjct: 307 LL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD-CNSLRALFR 361

Query: 456 NSSAISIDGNDNLCGGISELHLSTC 480
           N +  ++D  D  C    +L    C
Sbjct: 362 NVARPAVDDADQHCKIDYQLEHGLC 386

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (272), Expect = 5e-26
 Identities = 75/417 (17%), Positives = 141/417 (33%), Gaps = 76/417 (18%)

Query: 14  SLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGV 73
           +L+  +I+    + +     +   +   +E L+ +  Q         +    +  L +G 
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 74  NKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASI 133
           N +                           LP  +   +P L VL L RN  +       
Sbjct: 103 NAIR-------------------------YLPPHVFQNVPLLTVLVLERNDLS------- 130

Query: 134 SNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLE 193
                     + +  F           KL  + +S N+L       +E  ++    + L+
Sbjct: 131 ---------SLPRGIFHN-------TPKLTTLSMSNNNLER-----IE-DDTFQATTSLQ 168

Query: 194 LLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTG 253
            LQ+S N    +    + +L        V  N L     S L   + +E L    N    
Sbjct: 169 NLQLSSNRLTHVDLSLIPSLFH----ANVSYNLL-----STLAIPIAVEELDASHNSIN- 218

Query: 254 RIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNL 313
            + G +    +L  L L+ N       + + N   L+ ++   N LE  +     K Q L
Sbjct: 219 VVRGPV--NVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274

Query: 314 ISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLS 373
             L +SNN L   +      + +L + LDLS N L   +  N      L  + +  N + 
Sbjct: 275 ERLYISNNRLV-ALNLYGQPIPTLKV-LDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV 331

Query: 374 GQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLEN 430
             +   + +   L+ L ++ N +  N  S  +  R +    +   +   +I   LE+
Sbjct: 332 -TLK--LSTHHTLKNLTLSHNDWDCN--SLRALFRNVARPAVDDADQHCKIDYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  106 bits (266), Expect = 3e-25
 Identities = 66/375 (17%), Positives = 131/375 (34%), Gaps = 54/375 (14%)

Query: 9   PGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLY 68
              L S  ++ +L ++   +      +F    +++ L    N      P     +  +  
Sbjct: 62  AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121

Query: 69  LLLGVNKLSGEIPFSI-YNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG 127
           L+L  N LS  +P  I +N   L  + +  N L+  +  D      +L+ L L  N+ T 
Sbjct: 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH 179

Query: 128 PIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLV 187
            +  S                         ++  L    +S N L           ++L 
Sbjct: 180 -VDLS-------------------------LIPSLFHANVSYNLL-----------STLA 202

Query: 188 NASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLG 247
               +E L  S N+   ++      ++  L IL + +N L     + L N   L  + L 
Sbjct: 203 IPIAVEELDASHNSI-NVVRG---PVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLS 256

Query: 248 GNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSL 307
            N+    +    V + +L+RL +  N+    +      +  L  L+   N L   +  + 
Sbjct: 257 YNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 314

Query: 308 GKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDI 367
            +   L +L L +N++  T+        +L   L LS N  +    S   + +N+    +
Sbjct: 315 PQFDRLENLYLDHNSIV-TLKLST--HHTLK-NLTLSHNDWDC--NSLRALFRNVARPAV 368

Query: 368 SENKLSGQIPSSIGS 382
            +     +I   +  
Sbjct: 369 DDADQHCKIDYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 35/193 (18%), Positives = 71/193 (36%), Gaps = 8/193 (4%)

Query: 255 IPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLI 314
           I  ++        + ++              L     + F+ + +     + L   + + 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 315 SLNLSNNNLSGTIPTEVI-GLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLS 373
            LNL++  +   I T       ++   L +  N +    P  F  +  L  + +  N LS
Sbjct: 73  LLNLNDLQIE-EIDTYAFAYAHTIQ-KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 374 GQIPSSI-GSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFP 432
             +P  I  +  +L  L M+ N  +     +  +   ++NL LS N L+  +   L   P
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIP 186

Query: 433 FLQNLNLSFNHFE 445
            L + N+S+N   
Sbjct: 187 SLFHANVSYNLLS 199

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  120 bits (303), Expect = 1e-30
 Identities = 51/281 (18%), Positives = 100/281 (35%), Gaps = 17/281 (6%)

Query: 188 NASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLG 247
           N +R ++ +++D++    L     +    ++ L +  N L     + L     LE L+L 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSA-WNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 248 GNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSL 307
            N         +  L  L+ L L  N         +     + TL+   N +   +  S 
Sbjct: 67  SNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR 118

Query: 308 GKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNG-PLPSNFGILKNLGAID 366
           G  Q   ++ L+NN ++     +    S +  YLDL  N+++             L  ++
Sbjct: 119 G--QGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 367 ISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPK 426
           +  N +   +   +    +L+ L ++ N     +     S  G+  + L  N L   I K
Sbjct: 176 LQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 427 YLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDN 467
            L     L++ +L  N F           N    ++     
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.9 bits (247), Expect = 3e-23
 Identities = 54/392 (13%), Positives = 110/392 (28%), Gaps = 79/392 (20%)

Query: 32  IPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLN 91
           I     N +  +    + +     +         +  L L  N LS      +       
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP----- 56

Query: 92  YICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSG 151
                                  LE+LNL  N                            
Sbjct: 57  --------------------FTKLELLNLSSNVLY------------------------- 71

Query: 152 KVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVG 211
           +   L+ L  L  + ++ N++             L+    +E L  ++NN    +  + G
Sbjct: 72  ETLDLESLSTLRTLDLNNNYV-----------QELLVGPSIETLHAANNNI-SRVSCSRG 119

Query: 212 NLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTG-RIPGSIVDLYKLQRLAL 270
                 + + + NN++             +++L L  N+               L+ L L
Sbjct: 120 ---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 271 EGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTE 330
           + N  + ++   +     L TL+   N L   +         +  ++L NN L   I   
Sbjct: 177 QYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA 232

Query: 331 VIGLSSLSIYLDLSQNQLN-GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQL 389
           +    +L  + DL  N  + G L   F   + +  +     K   ++         +  L
Sbjct: 233 LRFSQNLE-HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTL 288

Query: 390 VMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS 421
              G +        L +      + L  ++  
Sbjct: 289 GHYGAY----CCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 96.6 bits (241), Expect = 2e-22
 Identities = 54/337 (16%), Positives = 117/337 (34%), Gaps = 31/337 (9%)

Query: 14  SLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGV 73
           + ++ +I  +  ++L   + S   +  +++ L  S N         L+   ++  L L  
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 74  NKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASI 133
           N L   +     +LS+L  + +  N +Q  L        P++E L+   N  +  +  S 
Sbjct: 68  NVLYETLDLE--SLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISR-VSCSR 118

Query: 134 SNASNLMRLVIAKNGFSGKVPSLKI--LHKLEWVGISRNHLGNGKKDDLEFVNSLVNASR 191
                   + +A N  +  +  L      +++++ +  N +     D + F     ++  
Sbjct: 119 --GQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEI-----DTVNFAELAASSDT 170

Query: 192 LELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQF 251
           LE L +  N     +   V     +L+ L + +N+L   +    ++   + ++ L  N+ 
Sbjct: 171 LEHLNLQYNFI-YDVKGQVVF--AKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKL 226

Query: 252 TGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQ 311
              I  ++     L+   L GN F        G L    + N     +       L   Q
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGF------HCGTLRDFFSKNQRVQTVAKQTVKKLT-GQ 278

Query: 312 NLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 348
           N     +      G    E +        + L  +  
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 89.3 bits (222), Expect = 8e-20
 Identities = 51/296 (17%), Positives = 93/296 (31%), Gaps = 25/296 (8%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLS 61
           + L   +     S   ++ L +  N LS    +     + LE L+ S+N    +  + L 
Sbjct: 20  SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLD-LE 77

Query: 62  QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
            L  +  L L  N +       +    S+  +    N +   +           + + L 
Sbjct: 78  SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCS---RGQGKKNIYLA 128

Query: 122 RNQFTGPIPASISNASNLMRLVIAKNGFSG--KVPSLKILHKLEWVGISRNHLGNGKKDD 179
            N+ T          S +  L +  N                LE + +  N         
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-------- 180

Query: 180 LEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLV 239
           +  V   V  ++L+ L +S N     +     +    +  + + NN+L   I   LR   
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSA-AGVTWISLRNNKL-VLIEKALRFSQ 237

Query: 240 NLEFLHLGGNQFT-GRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNF 294
           NLE   L GN F  G +        ++Q +A +  K           +  L     
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 80.0 bits (198), Expect = 9e-17
 Identities = 34/178 (19%), Positives = 65/178 (36%), Gaps = 12/178 (6%)

Query: 279 IPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLS 338
           I     N          ++ L+ ++ S      N+  L+LS N LS     ++   + L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQG 398
             L+LS N L      +   L  L  +D++ N +       +     +E L    N    
Sbjct: 62  -LLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 399 NIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSN 456
            +  S    +G +N+ L+ N ++            +Q L+L  N  +  V    + ++
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAAS 167

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 34/190 (17%), Positives = 69/190 (36%), Gaps = 12/190 (6%)

Query: 255 IPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLI 314
           I     +  + +   +  +     + S   +   +  L+   N L     + L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 315 SLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSG 374
            LNLS+N L      ++  LS+L   LDL+ N +         +  ++  +  + N +S 
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTL-RTLDLNNNYV-----QELLVGPSIETLHAANNNIS- 112

Query: 375 QIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSG-RIPKYLENFPF 433
           ++  S G     + + +  N               ++ LDL  N +      +   +   
Sbjct: 113 RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 434 LQNLNLSFNH 443
           L++LNL +N 
Sbjct: 171 LEHLNLQYNF 180

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 11/142 (7%)

Query: 302 SIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKN 361
           +I              +++++L   + +      ++   LDLS N L+    ++      
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVK-ELDLSGNPLSQISAADLAPFTK 59

Query: 362 LGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS 421
           L  +++S N L       + S + L  L +N N+        L     IE L  + NN+S
Sbjct: 60  LELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS 112

Query: 422 GRIPKYLENFPFLQNLNLSFNH 443
            R+          +N+ L+ N 
Sbjct: 113 -RVS--CSRGQGKKNIYLANNK 131

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (299), Expect = 3e-29
 Identities = 60/343 (17%), Positives = 120/343 (34%), Gaps = 36/343 (10%)

Query: 103 SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKL 162
           ++P  +        +L+L +N+                   + ++ F+           L
Sbjct: 25  AVPEGI---PTETRLLDLGKNRIK----------------TLNQDEFAS-------FPHL 58

Query: 163 EWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIV 222
           E + ++ N +       +E   +  N   L  L +  N    +       LS  L  L +
Sbjct: 59  EELELNENIVSA-----VE-PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS-NLTKLDI 111

Query: 223 GNNQLFGNIPSGL-RNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPS 281
             N++   +   + ++L NL+ L +G N        +   L  L++L LE          
Sbjct: 112 SENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170

Query: 282 SIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYL 341
           ++ +L  LI L      +      S  +   L  L +S+     T+    +   +L+  L
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT-SL 229

Query: 342 DLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIP 401
            ++   L          L  L  +++S N +S    S +    RL+++ + G       P
Sbjct: 230 SITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289

Query: 402 SSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHF 444
            +   L  +  L++S N L+        +   L+ L L  N  
Sbjct: 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (268), Expect = 4e-25
 Identities = 64/360 (17%), Positives = 123/360 (34%), Gaps = 60/360 (16%)

Query: 16  SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNK 75
           ++ R+L + +N +       F +   LE L  + N      P   + L  +  L L  N+
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 76  LSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISN 135
           L                           +P  +   L NL  L++  N+           
Sbjct: 92  LK-------------------------LIPLGVFTGLSNLTKLDISENKIV--------- 117

Query: 136 ASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELL 195
                  ++    F         L+ L+ + +  N L       +    +    + LE L
Sbjct: 118 -------ILLDYMFQD-------LYNLKSLEVGDNDLVY-----IS-HRAFSGLNSLEQL 157

Query: 196 QISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRI 255
            +   N   +  EA+ +L   L +L + +  +        + L  L+ L +    +   +
Sbjct: 158 TLEKCNLTSIPTEALSHL-HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 256 PGSIVDLYKLQRLALEGNKFWGEIPS-SIGNLTLLITLNFEENMLEGSIPSSLGKCQNLI 314
             + +    L  L++        +P  ++ +L  L  LN   N +     S L +   L 
Sbjct: 217 TPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ 275

Query: 315 SLNLSNNNLSGTIPTEV-IGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLS 373
            + L    L+  +      GL+ L + L++S NQL     S F  + NL  + +  N L+
Sbjct: 276 EIQLVGGQLA-VVEPYAFRGLNYLRV-LNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (257), Expect = 9e-24
 Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 7/237 (2%)

Query: 212 NLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE 271
            + T  R+L +G N++         +  +LE L L  N  +   PG+  +L+ L+ L L 
Sbjct: 29  GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88

Query: 272 GNKFWGEIPSSI-GNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTE 330
            N+    IP  +   L+ L  L+  EN +   +        NL SL + +N+L   I   
Sbjct: 89  SNRL-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHR 146

Query: 331 VI-GLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQL 389
              GL+SL   L L +  L          L  L  + +    ++     S     RL+ L
Sbjct: 147 AFSGLNSLEQ-LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205

Query: 390 VMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKY-LENFPFLQNLNLSFNHFE 445
            ++   +   +  +      + +L ++  NL+  +P   + +  +L+ LNLS+N   
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 83.2 bits (206), Expect = 3e-17
 Identities = 50/268 (18%), Positives = 88/268 (32%), Gaps = 33/268 (12%)

Query: 9   PGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLY 68
            G    LS L  L +  N +   +   F +L +L++L    N  V       S L  +  
Sbjct: 97  LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156

Query: 69  LLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGP 128
           L L    L+     ++ +L  L  + +    +  ++       L  L+VL +    +   
Sbjct: 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDT 215

Query: 129 IPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVN 188
           +  +     NL  L I     +  VP                              ++ +
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLT-AVPY----------------------------LAVRH 246

Query: 189 ASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHLG 247
              L  L +S N    +    +  L  RL+ + +   QL   +     R L  L  L++ 
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHEL-LRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVS 304

Query: 248 GNQFTGRIPGSIVDLYKLQRLALEGNKF 275
           GNQ T         +  L+ L L+ N  
Sbjct: 305 GNQLTTLEESVFHSVGNLETLILDSNPL 332

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (293), Expect = 2e-28
 Identities = 62/436 (14%), Positives = 136/436 (31%), Gaps = 25/436 (5%)

Query: 13  GSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLG 72
            + ++ +I  +  ++L   + S   +  +++ L  S N         L+   ++  L L 
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 73  VNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPAS 132
            N L   +     +LS+L  + +  N +Q  L        P++E L+   N  +  +  S
Sbjct: 67  SNVLYETLDLE--SLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISR-VSCS 117

Query: 133 ISNASNLMRLVIAKNGFSG-KVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASR 191
                    + +A N  +  +        +++++ +  N +     D + F     ++  
Sbjct: 118 R--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI-----DTVNFAELAASSDT 170

Query: 192 LELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQF 251
           LE L +  N    +  +    +  +L+ L + +N+L   +    ++   + ++ L  N+ 
Sbjct: 171 LEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKL 226

Query: 252 TGRIPGSIVDLYKLQRLALEGNKF-WGEIPSSIGNLTLLITLNFEEN-MLEGSIPSSLGK 309
              I  ++     L+   L GN F  G +         + T+  +    L G        
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 310 CQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISE 369
                       +L       +I L      L   Q      L            ID  +
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 370 NKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLE 429
            +    I            L          + +   +   ++            +    E
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ-IELQHATE 404

Query: 430 NFPFLQNLNLSFNHFE 445
               LQ L      +E
Sbjct: 405 EQSPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  112 bits (281), Expect = 8e-27
 Identities = 65/464 (14%), Positives = 126/464 (27%), Gaps = 56/464 (12%)

Query: 32  IPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLN 91
           I     N +  +    + +     +         +  L L  N LS      +       
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP----- 56

Query: 92  YICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSG 151
                                  LE+LNL  N     +   + + S L  L +  N    
Sbjct: 57  --------------------FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ- 93

Query: 152 KVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVG 211
               L +   +E +  + N++        +           + + +++N    +     G
Sbjct: 94  ---ELLVGPSIETLHAANNNISRVSCSRGQG---------KKNIYLANNKITMLRDLDEG 141

Query: 212 NLSTRLRILIVGNNQLFG-NIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLAL 270
              +R++ L +  N++   N      +   LE L+L  N     + G +    KL+ L L
Sbjct: 142 CR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDL 198

Query: 271 EGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTE 330
             NK    +     +   +  ++   N L   I  +L   QNL   +L  N        +
Sbjct: 199 SSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 331 VIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLV 390
               S       +++  +      N                              L++  
Sbjct: 257 --FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKE 314

Query: 391 MNGNFFQGNIPSSLSSLRG----IENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEG 446
                 QG+    L   R        +D  +      I +          L       + 
Sbjct: 315 HALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDE 374

Query: 447 EVPIKGVFSNSSAISIDGNDNLCGGISELHLSTCSIKESKQSRS 490
           +V         +   +DG      G  EL  +T      +  R+
Sbjct: 375 QVSN----GRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRA 414

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  110 bits (277), Expect = 3e-26
 Identities = 58/426 (13%), Positives = 119/426 (27%), Gaps = 31/426 (7%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLS 61
           + L   +     S   ++ L +  N LS    +     + LE L+ S+N         L 
Sbjct: 20  SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLE 77

Query: 62  QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
            L  +  L L  N +       +    S+  +    N +   +           + + L 
Sbjct: 78  SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCS---RGQGKKNIYLA 128

Query: 122 RNQFTGPIPASISNASNLMRLVIAKNGFSG--KVPSLKILHKLEWVGISRNHLGNGKKDD 179
            N+ T          S +  L +  N                LE + +  N         
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-------- 180

Query: 180 LEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLV 239
           +  V   V  ++L+ L +S N     +     +    +  + + NN+L   I   LR   
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSA-AGVTWISLRNNKL-VLIEKALRFSQ 237

Query: 240 NLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENML 299
           NLE   L GN F              +   +           +    T+    ++     
Sbjct: 238 NLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

Query: 300 EGSIPSSLGKCQNLISLNLSNNNLSG----TIPTEVIGLSSLSIYLDLSQNQLNGPLPSN 355
           E        +   L     +  +  G     +  E    +     +D  + Q    +   
Sbjct: 297 EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQR-EIDALKEQYRTVIDQV 355

Query: 356 FGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDL 415
               +    ++  +  L  Q+ +   +   L+  +      Q  +  +      ++ L  
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV-GQIELQHATEEQSPLQLLRA 414

Query: 416 SRNNLS 421
                 
Sbjct: 415 IVKRYE 420

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  116 bits (291), Expect = 8e-28
 Identities = 83/426 (19%), Positives = 139/426 (32%), Gaps = 63/426 (14%)

Query: 15  LSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVN 74
            +   +L +  + L+  +P        +  L    N     +P    +L+    L +  N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPELR---TLEVSGN 91

Query: 75  KLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASIS 134
           +L+  +P     L  L+    P+  L              L  L +  NQ T  +P    
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQLTS-LPVLPP 141

Query: 135 NASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSL-VNASRLE 193
               L  L ++ N  +        L KL       N L            SL +  S L+
Sbjct: 142 G---LQELSVSDNQLASLPALPSELCKLW---AYNNQL-----------TSLPMLPSGLQ 184

Query: 194 LLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTG 253
            L +SDN     LP     L  +L      NN+L  ++P+    L   + L + GN+ T 
Sbjct: 185 ELSVSDNQLA-SLPTLPSEL-YKLWAY---NNRL-TSLPALPSGL---KELIVSGNRLT- 234

Query: 254 RIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNL 313
            +P       +L+ L + GN+    +P     L    +L+   N L   +P SL    + 
Sbjct: 235 SLPVLPS---ELKELMVSGNRL-TSLPMLPSGLL---SLSVYRNQLT-RLPESLIHLSSE 286

Query: 314 ISLNLSNNNLSGTIPTEVIGLSSLSIYL--DLSQNQLNGPLPSNFGILKNLGAIDISENK 371
            ++NL  N LS      +  ++S   Y    +  +      P     L    A  +   +
Sbjct: 287 TTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

Query: 372 LSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENF 431
                P+         Q      F        L  L   EN  +       +I  +L   
Sbjct: 347 EGE--PAPADRWHMFGQEDNADAFSL-----FLDRLSETEN-FIKDAGFKAQISSWLAQL 398

Query: 432 PFLQNL 437
              + L
Sbjct: 399 AEDEAL 404

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  108 bits (270), Expect = 4e-25
 Identities = 72/353 (20%), Positives = 115/353 (32%), Gaps = 52/353 (14%)

Query: 87  LSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAK 146
            +    + V  + L  +LP  L     ++  L +  N  T  +PA       L  L ++ 
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPALPPE---LRTLEVSG 90

Query: 147 NGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGML 206
           N  +        L +L        HL                 S L  L I  N     L
Sbjct: 91  NQLTSLPVLPPGLLELSIFSNPLTHLPA-------------LPSGLCKLWIFGNQLTS-L 136

Query: 207 PEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQ 266
           P     L    + L V +NQL  ++P+    L  L       NQ T  +P        LQ
Sbjct: 137 PVLPPGL----QELSVSDNQL-ASLPALPSELCKL---WAYNNQLT-SLPMLPS---GLQ 184

Query: 267 RLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGT 326
            L++  N+    +P+    L  L   N   N L  S+P+       L  L +S N L+ +
Sbjct: 185 ELSVSDNQL-ASLPTLPSELYKLWAYN---NRLT-SLPALPS---GLKELIVSGNRLT-S 235

Query: 327 IPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRL 386
           +P     L  L     +S N+L   LP     L +L    +  N+L+ ++P S+   +  
Sbjct: 236 LPVLPSELKEL----MVSGNRLTS-LPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSE 286

Query: 387 EQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNL 439
             + + GN        +L  +                          L     
Sbjct: 287 TTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.0 bits (218), Expect = 1e-18
 Identities = 70/327 (21%), Positives = 109/327 (33%), Gaps = 50/327 (15%)

Query: 7   KVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRM 66
            +P     L +L I +    +L           S L  L    NQ    +P     L+  
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQL-TSLPVLPPGLQ-- 144

Query: 67  LYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFT 126
             L +  N+L+  +P     L  L       NQL  SLP         L+ L++  NQ  
Sbjct: 145 -ELSVSDNQLA-SLPALPSELCKLW---AYNNQLT-SLPMLPS----GLQELSVSDNQLA 194

Query: 127 GPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSL 186
             +P      S L +L    N  +  +P+L     L+ + +S N L              
Sbjct: 195 S-LPTLP---SELYKLWAYNNRLT-SLPAL--PSGLKELIVSGNRLT-------SLPVLP 240

Query: 187 VNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHL 246
              S L+ L +S N     LP         L  L V  NQL   +P  L +L +   ++L
Sbjct: 241 ---SELKELMVSGNRL-TSLPMLPSG----LLSLSVYRNQL-TRLPESLIHLSSETTVNL 291

Query: 247 GGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEI---PSSIGNLTLLITLNF----EENML 299
            GN  + R   ++ ++      +    +F       P     L L          E    
Sbjct: 292 EGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPA 351

Query: 300 EGSIPSSLGKCQNLISLNLSNNNLSGT 326
                   G+  N  + +L  + LS T
Sbjct: 352 PADRWHMFGQEDNADAFSLFLDRLSET 378

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  114 bits (288), Expect = 1e-27
 Identities = 90/443 (20%), Positives = 156/443 (35%), Gaps = 25/443 (5%)

Query: 16  SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNK 75
            K  IL + +N +S    S   +LS L  L  S N+            + + YL L  NK
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 76  LSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFT-LPNLEVLNLCRNQFTGPIPASIS 134
           L  +I        +L ++ +  N    +LP    F  +  L+ L L            I+
Sbjct: 81  LV-KISCH--PTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 135 NASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDL--EFVNSLVNASRL 192
           +  N+ ++++      G+    + L       +      N +   +    V ++ N    
Sbjct: 137 H-LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 193 ELLQISDNNFGGMLPEAVGNLST--RLRILIVGNNQLFGNIPSGLRNLV---NLEFLHLG 247
            +  + ++N        +  L T  +L  L + N +   N    +  LV    + +  + 
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255

Query: 248 GNQFTGRIPGSIVD-----LYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGS 302
             +  G++     D     L  L    +  + F           + +   NF  +     
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 303 IPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLN--GPLPSNFGILK 360
                 K    + L+ SNN L+ T+      L+ L   L L  NQL     +      +K
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE-TLILQMNQLKELSKIAEMTTQMK 374

Query: 361 NLGAIDISENKLSGQIPSSI-GSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNN 419
           +L  +DIS+N +S             L  L M+ N     I   L     I+ LDL  N 
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNK 432

Query: 420 LSGRIPKYLENFPFLQNLNLSFN 442
           +   IPK +     LQ LN++ N
Sbjct: 433 IK-SIPKQVVKLEALQELNVASN 454

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (266), Expect = 8e-25
 Identities = 71/427 (16%), Positives = 136/427 (31%), Gaps = 23/427 (5%)

Query: 9   PGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQF-VGQIPETLSQLKRML 67
                   +L  L +  N L      S     +L+ L  S N F    I +    + ++ 
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118

Query: 68  YLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQ--GSLPSDLGFTLPNLEVLNLCRNQF 125
           +L L    L       I +L+    + V                F   +L ++     +F
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178

Query: 126 TGPIPASISNASNL----MRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLE 181
              +  S+   +NL    ++ V+  N  S  +  L  L     +     +      +   
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238

Query: 182 FVNSLVNASRLELLQISDNNFGGMLPEAVGNLS----TRLRILIVGNNQLFGNIPSGLRN 237
            +  LV  + +    IS+    G L     + S      L I  V ++            
Sbjct: 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298

Query: 238 LVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEEN 297
             N+   +   +            +     L    N     +  + G+LT L TL  + N
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358

Query: 298 MLEGSIPSSLG---KCQNLISLNLSNNNLSGTIPTEVI-GLSSLSIYLDLSQNQLNGPLP 353
            L+  +        + ++L  L++S N++S            SL   L++S N L   + 
Sbjct: 359 QLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL-SLNMSSNILTDTIF 416

Query: 354 SNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENL 413
                   +  +D+  NK+   IP  +     L++L +  N  +         L  ++ +
Sbjct: 417 RCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473

Query: 414 DLSRNNL 420
            L  N  
Sbjct: 474 WLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 81.1 bits (200), Expect = 1e-16
 Identities = 67/397 (16%), Positives = 127/397 (31%), Gaps = 32/397 (8%)

Query: 68  YLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG 127
            L +  N +S      I +LS L  + +  N++Q  L   +      LE L+L  N+   
Sbjct: 25  ILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVK 83

Query: 128 PIPASISNASNLMRLVIAKNGFS--GKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNS 185
               S     NL  L ++ N F           + +L+++G+S  HL       +  +N 
Sbjct: 84  ---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140

Query: 186 LVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLH 245
                 L        +  G+        +  L I+   N +    +   ++ + NLE  +
Sbjct: 141 SKVLLVLGETYGEKEDPEGL----QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 246 LGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPS 305
           +       +    +  L KLQ      N     +  +    T    +   + +       
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQT-----NPKLSNLTLNNIETTWNSFIRILQLVWH----- 246

Query: 306 SLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSI----YLDLSQNQLNGPLPSNFGILKN 361
                  +   ++SN  L G +       S  S+       +  +    P    + I  N
Sbjct: 247 -----TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN 301

Query: 362 LGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS 421
           +   + + +             +    L  + N     +  +   L  +E L L  N L 
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

Query: 422 --GRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSN 456
              +I +       LQ L++S N    +   KG  S 
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEK-KGDCSW 397

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 5e-12
 Identities = 40/242 (16%), Positives = 80/242 (33%), Gaps = 12/242 (4%)

Query: 212 NLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE 271
           +LS +  IL +  N +     S + +L  L  L +  N+             +L+ L L 
Sbjct: 18  DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77

Query: 272 GNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSS--LGKCQNLISLNLSNNNLSGTIPT 329
            NK       S      L  L+   N  + ++P     G    L  L LS  +L  +   
Sbjct: 78  HNKLVK---ISCHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 330 EVIGLSSLSIYLDLSQNQLNGPLPSNFGIL--KNLGAIDISENKLSGQIPSSIGSCTRLE 387
            +  L+   + L L +       P        ++L  +  +  +    +  S+ +   LE
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 388 QLVMNGNFFQGNIPSSLSSLRGIEN----LDLSRNNLSGRIPKYLENFPFLQNLNLSFNH 443
              +            LS L  ++      +L+ NN+      ++     + +  + +  
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253

Query: 444 FE 445
             
Sbjct: 254 IS 255

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLS--GEIPSSFGNLSSLEALSASANQF-VGQIP 57
            N L   V    G L++L  L +  N L    +I      + SL+ L  S N     +  
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

Query: 58  ETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEV 117
              S  K +L L +  N L+  I   +     +  + +  N+++ S+P  +   L  L+ 
Sbjct: 393 GDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQV-VKLEALQE 448

Query: 118 LNLCRNQFTGPIPASISNASNLMRLVIAKN 147
           LN+  NQ            ++L ++ +  N
Sbjct: 449 LNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  115 bits (288), Expect = 2e-27
 Identities = 67/369 (18%), Positives = 135/369 (36%), Gaps = 28/369 (7%)

Query: 14  SLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGV 73
           +L+  +I+    + +     +   +   +E L+ +  Q         +    +  L +G 
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 74  NKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASI 133
           N +    P    N+  L  + +  N L  SLP  +    P L  L++  N        + 
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167

Query: 134 SNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLE 193
              ++L  L ++ N  +  V  L ++  L    +S N L           ++L     +E
Sbjct: 168 QATTSLQNLQLSSNRLT-HVD-LSLIPSLFHANVSYNLL-----------STLAIPIAVE 214

Query: 194 LLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTG 253
            L  S N+    +    G ++  L IL + +N L     + L N   L  + L  N+   
Sbjct: 215 ELDASHNS----INVVRGPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEK 268

Query: 254 RIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNL 313
            +    V + +L+RL +  N+    +      +  L  L+   N L   +  +  +   L
Sbjct: 269 IMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 326

Query: 314 ISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLS 373
            +L L +N++  T+        +L   L LS N  +    S   + +N+    + +    
Sbjct: 327 ENLYLDHNSIV-TLKLST--HHTLK-NLTLSHNDWDC--NSLRALFRNVARPAVDDADQH 380

Query: 374 GQIPSSIGS 382
            +I   +  
Sbjct: 381 CKIDYQLEH 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 75.0 bits (184), Expect = 2e-14
 Identities = 39/236 (16%), Positives = 81/236 (34%), Gaps = 13/236 (5%)

Query: 231 IPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLI 290
           I S L+       +H+             + L   + +  + +       + + +   + 
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 291 TLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVI-GLSSLSIYLDLSQNQLN 349
            LN  +  +E     +      +  L +  N +   +P  V   +  L   L L +N L+
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLL-TVLVLERNDLS 136

Query: 350 GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRG 409
                 F     L  + +S N L      +  + T L+ L ++ N    ++   LS +  
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPS 193

Query: 410 IENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGN 465
           + + ++S N LS      L     ++ L+ S N     V    V    + + +  N
Sbjct: 194 LFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVR-GPVNVELTILKLQHN 242

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.6 bits (157), Expect = 4e-11
 Identities = 34/212 (16%), Positives = 68/212 (32%), Gaps = 9/212 (4%)

Query: 278 EIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVI-GLSS 336
            I S++    +   ++ +    +           N   +   N+ +   +P  ++     
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 76

Query: 337 LSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFF 396
           +   L+L+  Q+       F     +  + +  N +    P    +   L  LV+  N  
Sbjct: 77  VE-LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 397 QGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSN 456
                    +   +  L +S NNL        +    LQNL LS N     V +  +  +
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL-SLIPS 193

Query: 457 SSAISIDGND----NLCGGISELHLSTCSIKE 484
               ++  N      +   + EL  S  SI  
Sbjct: 194 LFHANVSYNLLSTLAIPIAVEELDASHNSINV 225

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  101 bits (253), Expect = 2e-23
 Identities = 60/234 (25%), Positives = 98/234 (41%), Gaps = 8/234 (3%)

Query: 212 NLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLAL 270
            +ST  R+L +  NQ+   I     ++L +LE L L  N       G+   L  L  L L
Sbjct: 61  GISTNTRLLNLHENQI-QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119

Query: 271 EGNKFWGEIPSSI-GNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPT 329
             N+    IP+     L+ L  L    N +E     +  +  +L  L+L        I  
Sbjct: 120 FDNRL-TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178

Query: 330 EV-IGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQ 388
               GLS+L  YL+L+   L   +P+    L  L  +D+S N LS   P S      L++
Sbjct: 179 GAFEGLSNLR-YLNLAMCNLRE-IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235

Query: 389 LVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFN 442
           L M  +  Q    ++  +L+ +  ++L+ NNL+            L+ ++L  N
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.0 bits (234), Expect = 6e-21
 Identities = 59/234 (25%), Positives = 93/234 (39%), Gaps = 9/234 (3%)

Query: 190 SRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHLGG 248
           +   LL + +N    +   +  +L   L IL +  N +   I  G    L NL  L L  
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHL-RHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFD 121

Query: 249 NQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSI-GNLTLLITLN-FEENMLEGSIPSS 306
           N+ T    G+ V L KL+ L L  N     IPS     +  L  L+  E   L      +
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180

Query: 307 LGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAID 366
                NL  LNL+  NL   IP  +  L  L   LDLS N L+   P +F  L +L  + 
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLD-ELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 367 ISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL 420
           + ++++     ++  +   L ++ +  N          + L  +E + L  N  
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.7 bits (215), Expect = 2e-18
 Identities = 59/214 (27%), Positives = 90/214 (42%), Gaps = 9/214 (4%)

Query: 184 NSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSG-LRNLVNLE 242
           NS  +   LE+LQ+S N+   +   A   L   L  L + +N+L   IP+G    L  L+
Sbjct: 82  NSFKHLRHLEILQLSRNHIRTIEIGAFNGL-ANLNTLELFDNRL-TTIPNGAFVYLSKLK 139

Query: 243 FLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSI-GNLTLLITLNFEENMLEG 301
            L L  N        +   +  L+RL L   K    I       L+ L  LN     L  
Sbjct: 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198

Query: 302 SIPSSLGKCQNLISLNLSNNNLSGTIPTEVI-GLSSLSIYLDLSQNQLNGPLPSNFGILK 360
            IP+ L     L  L+LS N+LS  I      GL  L   L + Q+Q+     + F  L+
Sbjct: 199 EIPN-LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQ-KLWMIQSQIQVIERNAFDNLQ 255

Query: 361 NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGN 394
           +L  I+++ N L+            LE++ ++ N
Sbjct: 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.3 bits (201), Expect = 1e-16
 Identities = 59/251 (23%), Positives = 100/251 (39%), Gaps = 19/251 (7%)

Query: 103 SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVP--SLKILH 160
            +P  +     N  +LNL  NQ       S  +  +L  L +++N     +   +   L 
Sbjct: 57  EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLA 112

Query: 161 KLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRIL 220
            L  + +  N L            + V  S+L+ L + +N    +   A   +   LR L
Sbjct: 113 NLNTLELFDNRLTTIPNG------AFVYLSKLKELWLRNNPIESIPSYAFNRI-PSLRRL 165

Query: 221 IVGNNQLFGNIPSG-LRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEI 279
            +G  +    I  G    L NL +L+L        IP ++  L KL  L L GN      
Sbjct: 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIR 223

Query: 280 PSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVI-GLSSLS 338
           P S   L  L  L   ++ ++    ++    Q+L+ +NL++NNL+  +P ++   L  L 
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLE 282

Query: 339 IYLDLSQNQLN 349
             + L  N  N
Sbjct: 283 -RIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.3 bits (201), Expect = 1e-16
 Identities = 58/259 (22%), Positives = 102/259 (39%), Gaps = 38/259 (14%)

Query: 18  LRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLS 77
            R+L +H N +     +SF +L  LE L  S N          + L  +  L L  N+L+
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 78  GEIPFSI-YNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCR-NQFTGPIPASISN 135
             IP      LS L  + +  N ++ S+PS     +P+L  L+L    + +         
Sbjct: 126 -TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS--------- 174

Query: 136 ASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELL 195
                   I++  F G       L  L ++ ++  +        L  + +L    +L+ L
Sbjct: 175 -------YISEGAFEG-------LSNLRYLNLAMCN--------LREIPNLTPLIKLDEL 212

Query: 196 QISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHLGGNQFTGR 254
            +S N+   + P +   L   L+ L +  +Q+   I      NL +L  ++L  N  T  
Sbjct: 213 DLSGNHLSAIRPGSFQGL-MHLQKLWMIQSQI-QVIERNAFDNLQSLVEINLAHNNLTLL 270

Query: 255 IPGSIVDLYKLQRLALEGN 273
                  L+ L+R+ L  N
Sbjct: 271 PHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.0 bits (195), Expect = 6e-16
 Identities = 65/300 (21%), Positives = 107/300 (35%), Gaps = 59/300 (19%)

Query: 24  HRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFS 83
            R NL  E+P      ++   L+   NQ       +   L+ +  L L  N +      +
Sbjct: 51  VRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA 107

Query: 84  IYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLV 143
              L++LN + +  N+L  ++P+     L  L+ L L  N                    
Sbjct: 108 FNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE----------------S 150

Query: 144 IAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFG 203
           I    F+  +PSL+ L                   DL  +  L          IS+  F 
Sbjct: 151 IPSYAFNR-IPSLRRL-------------------DLGELKRLSY--------ISEGAFE 182

Query: 204 GMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLY 263
           G+         + LR L +    L   IP+ L  L+ L+ L L GN  +   PGS   L 
Sbjct: 183 GL---------SNLRYLNLAMCNL-REIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLM 231

Query: 264 KLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNL 323
            LQ+L +  ++      ++  NL  L+ +N   N L            +L  ++L +N  
Sbjct: 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 76.3 bits (188), Expect = 4e-15
 Identities = 52/227 (22%), Positives = 85/227 (37%), Gaps = 11/227 (4%)

Query: 232 PSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLIT 291
           PS          +          +P  I      + L L  N+      +S  +L  L  
Sbjct: 36  PSVCSCSNQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEI 92

Query: 292 LNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEV-IGLSSLSIYLDLSQNQLNG 350
           L    N +      +     NL +L L +N L+ TIP    + LS L   L L  N +  
Sbjct: 93  LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLK-ELWLRNNPIES 150

Query: 351 PLPSNFGILKNLGAIDISE-NKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRG 409
                F  + +L  +D+ E  +LS     +    + L  L +     +  IP+ L+ L  
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIK 208

Query: 410 IENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSN 456
           ++ LDLS N+LS   P   +    LQ L +  +  +  +  +  F N
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIE-RNAFDN 253

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  100 bits (251), Expect = 9e-23
 Identities = 73/449 (16%), Positives = 138/449 (30%), Gaps = 47/449 (10%)

Query: 9   PGKLGSLSKLRILAMHRNNLSGEIPS----------------------SFGNLSSLEALS 46
              +  LS+LR+L +  N +   +                        S   ++SL  L 
Sbjct: 69  MPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLD 127

Query: 47  ASANQFVGQIPET--LSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSL 104
            S N F   +P       L ++ +L L   K   ++         L+ I + +       
Sbjct: 128 LSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKG 185

Query: 105 PSDLGFTLPNLEVLNLCRNQ---FTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHK 161
                  +PN  VL+L  +    F+  +  S++   +L    I  N  + +     +   
Sbjct: 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL 245

Query: 162 LEWVGISRNHLGNGKKDDLEFVN--SLVNASRLELLQISDNNFGGMLPEAVGNLSTR--- 216
                +    L + +      V          +E L I +      +       S     
Sbjct: 246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK 305

Query: 217 -LRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKF 275
            L I  V N     +  +       +    L  +                  L    N F
Sbjct: 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365

Query: 276 WGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNL----SGTIPTEV 331
              +      L  L TL  + N L+ +        +N+ SL   + +L    S       
Sbjct: 366 TDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424

Query: 332 IGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVM 391
               S+   L+LS N L G +     +   +  +D+  N++   IP  +     L++L +
Sbjct: 425 AWAESIL-VLNLSSNMLTGSVFR--CLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNV 480

Query: 392 NGNFFQGNIP-SSLSSLRGIENLDLSRNN 419
             N  + ++P      L  ++ + L  N 
Sbjct: 481 ASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 98.0 bits (244), Expect = 7e-22
 Identities = 74/444 (16%), Positives = 141/444 (31%), Gaps = 45/444 (10%)

Query: 14  SLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPET--LSQLKRMLYLLL 71
               L  L +  N L   I      ++SL  L  S N F   +P       L ++ +L L
Sbjct: 98  FNQDLEYLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGL 153

Query: 72  GVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQ---FTGP 128
              K   ++         L+ I + +              +PN  VL+L  +    F+  
Sbjct: 154 SAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ 212

Query: 129 IPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVN--SL 186
           +  S++   +L    I  N  + +     +        +    L + +      V     
Sbjct: 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272

Query: 187 VNASRLELLQISDNNFGGMLPEAVGNLSTR----LRILIVGNNQLFGNIPSGLRNLVNLE 242
                +E L I +      +       S      L I  V N     +  +       + 
Sbjct: 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332

Query: 243 FLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGS 302
              L  +                  L    N F   +      L  L TL  + N L+ +
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-N 391

Query: 303 IPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLN-GPLPSNFGILKN 361
                   +N+ SL                        LD+S N LN           ++
Sbjct: 392 FFKVALMTKNMSSLET----------------------LDVSLNSLNSHAYDRTCAWAES 429

Query: 362 LGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS 421
           +  +++S N L+G +   +    +++ L ++ N    +IP  ++ L+ ++ L+++ N L 
Sbjct: 430 ILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486

Query: 422 GRIPK-YLENFPFLQNLNLSFNHF 444
             +P    +    LQ + L  N +
Sbjct: 487 -SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 93.4 bits (232), Expect = 2e-20
 Identities = 82/460 (17%), Positives = 155/460 (33%), Gaps = 35/460 (7%)

Query: 16  SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNK 75
            + + L++ +N++S         LS L  L  S N+            + + YL +  N+
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 76  LSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFT-LPNLEVLNLCRNQFTGPIPASIS 134
           L   I      ++SL ++ +  N     LP    F  L  L  L L   +F   +     
Sbjct: 112 LQ-NISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPV 166

Query: 135 NASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLEL 194
              +L  +++    +  K    + L        +  HL     + L  V   ++ + L  
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIP---NTTVLHLVF-HPNSLFSVQVNMSVNALGH 222

Query: 195 LQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN---------LEFLH 245
           LQ+S+        + +    + L       N    +I +  +  V          +E+L+
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282

Query: 246 LGGNQFTGRIPGSIVD-----LYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLE 300
           +     T RI           L  L    ++   F     +       +       +   
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342

Query: 301 GSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILK 360
                      +   LN + N  + ++      L  L   L L +N L         + K
Sbjct: 343 FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ-TLILQRNGLKN-FFKVALMTK 400

Query: 361 NLGAIDISENKL----SGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLS 416
           N+ +++  +  L    S     +      +  L ++ N   G++   L     ++ LDL 
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDLH 458

Query: 417 RNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSN 456
            N +   IPK + +   LQ LN++ N  +  VP  GVF  
Sbjct: 459 NNRIM-SIPKDVTHLQALQELNVASNQLK-SVP-DGVFDR 495

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 9/129 (6%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFV----GQIP 57
           N     V     +L +L+ L + RN L            ++ +L                
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421

Query: 58  ETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEV 117
            T +  + +L L L  N L+G +   +     +  + +  N++  S+P D+   L  L+ 
Sbjct: 422 RTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDV-THLQALQE 477

Query: 118 LNLCRNQFT 126
           LN+  NQ  
Sbjct: 478 LNVASNQLK 486

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.5 bits (243), Expect = 5e-22
 Identities = 57/234 (24%), Positives = 90/234 (38%), Gaps = 9/234 (3%)

Query: 190 SRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHLGG 248
           S    L + +NN   +  +   +L   L +L +G N +   I  G    L +L  L L  
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHL-HHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFD 132

Query: 249 NQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSI-GNLTLLITLN-FEENMLEGSIPSS 306
           N  T    G+   L KL+ L L  N     IPS     +  L+ L+  E   LE     +
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 307 LGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAID 366
                NL  LNL   N+   +P  +  L  L   L++S N      P +F  L +L  + 
Sbjct: 192 FEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLE-ELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 367 ISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL 420
           +  +++S    ++      L +L +  N          + LR +  L L  N  
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.6 bits (212), Expect = 4e-18
 Identities = 55/260 (21%), Positives = 92/260 (35%), Gaps = 37/260 (14%)

Query: 212 NLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLAL 270
            + +  R L +  N +   I +   R+L +LE L LG N       G+   L  L  L L
Sbjct: 72  GIPSNTRYLNLMENNI-QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130

Query: 271 EGNKFWGEIPSSI-GNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPT 329
             N     IPS     L+ L  L    N +E     +  +  +L+ L+L        I  
Sbjct: 131 FDNWL-TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 330 EV-IGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQ 388
               GL +L  YL+L    +   +P+    L  L  +++S N    +I            
Sbjct: 190 GAFEGLFNLK-YLNLGMCNIKD-MPN-LTPLVGLEELEMSGNHFP-EIR----------- 234

Query: 389 LVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEV 448
                       P S   L  ++ L +  + +S       +    L  LNL+ N+    +
Sbjct: 235 ------------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SL 281

Query: 449 PIKGVFSNSSA---ISIDGN 465
           P   +F+       + +  N
Sbjct: 282 P-HDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.6 bits (212), Expect = 5e-18
 Identities = 63/271 (23%), Positives = 102/271 (37%), Gaps = 41/271 (15%)

Query: 103 SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKL 162
            +P  +     N   LNL  N                   +I  + F         LH L
Sbjct: 68  EVPQGI---PSNTRYLNLMENNIQ----------------MIQADTFRH-------LHHL 101

Query: 163 EWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIV 222
           E + + RN +       +E V +    + L  L++ DN    +   A   L ++LR L +
Sbjct: 102 EVLQLGRNSIRQ-----IE-VGAFNGLASLNTLELFDNWLTVIPSGAFEYL-SKLRELWL 154

Query: 223 GNNQLFGNIPSG-LRNLVNLEFLHLGG-NQFTGRIPGSIVDLYKLQRLALEGNKFWGEIP 280
            NN +  +IPS     + +L  L LG   +      G+   L+ L+ L L       ++P
Sbjct: 155 RNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMP 212

Query: 281 SSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVI-GLSSLSI 339
            ++  L  L  L    N      P S     +L  L + N+ +S  I      GL+SL  
Sbjct: 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLV- 269

Query: 340 YLDLSQNQLNGPLPSNFGILKNLGAIDISEN 370
            L+L+ N L+      F  L+ L  + +  N
Sbjct: 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 83.3 bits (206), Expect = 3e-17
 Identities = 56/258 (21%), Positives = 96/258 (37%), Gaps = 36/258 (13%)

Query: 18  LRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLS 77
            R L +  NN+      +F +L  LE L    N          + L  +  L L  N L+
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136

Query: 78  GEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCR-NQFTGPIPASISNA 136
                +   LS L  + +  N ++ S+PS     +P+L  L+L    +            
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLE---------- 185

Query: 137 SNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQ 196
                  I++  F G       L  L+++ +   ++ +        + +L     LE L+
Sbjct: 186 ------YISEGAFEG-------LFNLKYLNLGMCNIKD--------MPNLTPLVGLEELE 224

Query: 197 ISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHLGGNQFTGRI 255
           +S N+F  + P +   L + L+ L V N+Q+   I       L +L  L+L  N  +   
Sbjct: 225 MSGNHFPEIRPGSFHGL-SSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHNNLSSLP 282

Query: 256 PGSIVDLYKLQRLALEGN 273
                 L  L  L L  N
Sbjct: 283 HDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.0 bits (195), Expect = 6e-16
 Identities = 69/300 (23%), Positives = 103/300 (34%), Gaps = 59/300 (19%)

Query: 24  HRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFS 83
            R  LS E+P      S+   L+   N       +T   L  +  L LG N +      +
Sbjct: 62  TRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA 118

Query: 84  IYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLV 143
              L+SLN + +  N L   +PS     L  L  L L  N                    
Sbjct: 119 FNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE----------------S 161

Query: 144 IAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFG 203
           I    F+  VPSL  L                    L  +  L          IS+  F 
Sbjct: 162 IPSYAFNR-VPSLMRLD-------------------LGELKKLEY--------ISEGAFE 193

Query: 204 GMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLY 263
           G+           L+ L +G   +  ++P+ L  LV LE L + GN F    PGS   L 
Sbjct: 194 GL---------FNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLS 242

Query: 264 KLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNL 323
            L++L +  ++      ++   L  L+ LN   N L           + L+ L+L +N  
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.6 bits (155), Expect = 5e-11
 Identities = 47/245 (19%), Positives = 78/245 (31%), Gaps = 60/245 (24%)

Query: 9   PGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLY 68
            G    L+ L  L +  N L+     +F  LS L  L    N          +++  ++ 
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175

Query: 69  LLLG-VNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG 127
           L LG + KL      +   L +L Y+ + +  ++  +P+     L  LE L +  N F  
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTP--LVGLEELEMSGNHFP- 231

Query: 128 PIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLV 187
                           I    F G       L  L+ + +  + +               
Sbjct: 232 ---------------EIRPGSFHG-------LSSLKKLWVMNSQVS-------------- 255

Query: 188 NASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHL 246
                    I  N F G+           L  L + +N L  ++P      L  L  LHL
Sbjct: 256 --------LIERNAFDGL---------ASLVELNLAHNNL-SSLPHDLFTPLRYLVELHL 297

Query: 247 GGNQF 251
             N +
Sbjct: 298 HHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 53.6 bits (129), Expect = 8e-08
 Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETL 60
             +L     G    L  L+ L +   N+  ++P+    L  LE L  S N F    P + 
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSF 238

Query: 61  SQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNL 120
             L  +  L +  +++S     +   L+SL  + +  N L  SLP DL   L  L  L+L
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHL 297

Query: 121 CRNQF 125
             N +
Sbjct: 298 HHNPW 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.1 bits (237), Expect = 1e-21
 Identities = 63/264 (23%), Positives = 109/264 (41%), Gaps = 21/264 (7%)

Query: 190 SRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHLGG 248
               LL + +N    +      NL   L  LI+ NN++   I  G    LV LE L+L  
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKI-SKISPGAFAPLVKLERLYLSK 109

Query: 249 NQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSI-GNLTLLITLNFEENMLEGSI--PS 305
           NQ    +P  +     LQ L +  N+   ++  S+   L  +I +    N L+ S     
Sbjct: 110 NQLK-ELPEKM--PKTLQELRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 306 SLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAI 365
           +    + L  + +++ N++ TIP  +    SL+  L L  N++     ++   L NL  +
Sbjct: 166 AFQGMKKLSYIRIADTNIT-TIPQGL--PPSLT-ELHLDGNKITKVDAASLKGLNNLAKL 221

Query: 366 DISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSG--- 422
            +S N +S     S+ +   L +L +N N     +P  L+  + I+ + L  NN+S    
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 280

Query: 423 ---RIPKYLENFPFLQNLNLSFNH 443
                P Y         ++L  N 
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 92.0 bits (229), Expect = 1e-20
 Identities = 57/236 (24%), Positives = 101/236 (42%), Gaps = 10/236 (4%)

Query: 212 NLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE 271
           +L     +L + NN++        +NL NL  L L  N+ +   PG+   L KL+RL L 
Sbjct: 49  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108

Query: 272 GNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNL-SGTIPTE 330
            N+   E+P  +     L  L   EN +     S       +I + L  N L S  I   
Sbjct: 109 KNQL-KELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 331 V-IGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQL 389
              G+  LS Y+ ++   +   +P   G+  +L  + +  NK++    +S+     L +L
Sbjct: 166 AFQGMKKLS-YIRIADTNITT-IPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 221

Query: 390 VMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE 445
            ++ N        SL++   +  L L+ N L  ++P  L +  ++Q + L  N+  
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.1 bits (224), Expect = 6e-20
 Identities = 62/345 (17%), Positives = 106/345 (30%), Gaps = 65/345 (18%)

Query: 103 SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKL 162
            +P DL    P+  +L+L  N+ T                 I    F         L  L
Sbjct: 45  KVPKDLP---PDTALLDLQNNKIT----------------EIKDGDFKN-------LKNL 78

Query: 163 EWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIV 222
             + +  N +            +     +LE L +S N     L E    +   L+ L V
Sbjct: 79  HTLILINNKISKISP------GAFAPLVKLERLYLSKNQ----LKELPEKMPKTLQELRV 128

Query: 223 GNNQLFGNIPSG-LRNLVNLEFLHLGGNQFTGRI--PGSIVDLYKLQRLALEGNKFWGEI 279
             N++   +       L  +  + LG N         G+   + KL  + +        I
Sbjct: 129 HENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTI 186

Query: 280 PSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSI 339
           P   G    L  L+ + N +     +SL    NL  L LS N++S      +     L  
Sbjct: 187 PQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR- 243

Query: 340 YLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGN 399
            L L+ N+L   +P      K +  + +  N +S                + + +F    
Sbjct: 244 ELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA---------------IGSNDFCPPG 287

Query: 400 IPSSLSSLRGIENLDLSRNNLS-GRIPKYL-ENFPFLQNLNLSFN 442
             +  +S  G   + L  N +    I             + L   
Sbjct: 288 YNTKKASYSG---VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.0 bits (216), Expect = 5e-19
 Identities = 58/294 (19%), Positives = 104/294 (35%), Gaps = 32/294 (10%)

Query: 18  LRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLS 77
             +L +  N ++      F NL +L  L    N+     P   + L ++  L L  N+L 
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 78  GEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFT-GPIPASI-SN 135
            E+P  +    +L  + V  N++   +   +   L  + V+ L  N      I       
Sbjct: 114 -ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 136 ASNLMRLVIAKNGFS----GKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASR 191
              L  + IA    +    G  PSL  LH      +  N +       L+        + 
Sbjct: 170 MKKLSYIRIADTNITTIPQGLPPSLTELH------LDGNKITKVDAASLK------GLNN 217

Query: 192 LELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQF 251
           L  L +S N+   +   ++ N    LR L + NN+L   +P GL +   ++ ++L  N  
Sbjct: 218 LAKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNI 275

Query: 252 TG------RIPGSIVDLYKLQRLALEGNKF-WGEIPSSI-GNLTLLITLNFEEN 297
           +         PG          ++L  N   + EI  S    + +   +     
Sbjct: 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 18/183 (9%)

Query: 312 NLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENK 371
           +L  +  S+  L   +P     L   +  LDL  N++      +F  LKNL  + +  NK
Sbjct: 32  HLRVVQCSDLGLE-KVPK---DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 372 LSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKY-LEN 430
           +S   P +     +LE+L ++ N  +  +P  +   + ++ L +  N ++ ++ K     
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNG 143

Query: 431 FPFLQNLNLSFNHFEGEVPIKGVFSNSSA---ISIDGN------DNLCGGISELHLSTCS 481
              +  + L  N  +      G F        I I           L   ++ELHL    
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK 203

Query: 482 IKE 484
           I +
Sbjct: 204 ITK 206

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 8/122 (6%)

Query: 9   PGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLY 68
              L  L+ L  L +  N++S     S  N   L  L  + N+ V ++P  L+  K +  
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV 267

Query: 69  LLLGVNKLSG------EIPFSIYNLSSLNYICVPVNQLQ-GSLPSDLGFTLPNLEVLNLC 121
           + L  N +S         P      +S + + +  N +Q   +       +     + L 
Sbjct: 268 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327

Query: 122 RN 123
             
Sbjct: 328 NY 329

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 96.0 bits (239), Expect = 2e-21
 Identities = 76/392 (19%), Positives = 142/392 (36%), Gaps = 33/392 (8%)

Query: 68  YLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG 127
           Y+ L +N ++     S   L  L ++ V        + ++    L +L +L L  NQF  
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93

Query: 128 PIPASI-SNASNLMRLVIAKNGF-SGKVP--SLKILHKLEWVGISRNHLGNGKKDDLEFV 183
            +     +  +NL  L + +       +     K L  LE + +  N++       ++  
Sbjct: 94  -LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI-----KKIQPA 147

Query: 184 NSLVNASRLELLQISDNNFGGMLPEAVGNL-STRLRILIVGNNQL-------FGNIPSG- 234
           +  +N  R  +L ++ N    +  E + N       +L + +  L        G    G 
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 235 LRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNF 294
                ++  L L GN F   +     D     ++          + SS G+       NF
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 295 EENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEV-IGLSSLSIYLDLSQNQLNGPLP 353
               LE S          + + +LS + +   +   V    + L   L L+QN++N  + 
Sbjct: 268 TFKGLEAS---------GVKTCDLSKSKIF-ALLKSVFSHFTDLE-QLTLAQNEIN-KID 315

Query: 354 SN-FGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIEN 412
            N F  L +L  +++S+N L         +  +LE L ++ N  +     S   L  ++ 
Sbjct: 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375

Query: 413 LDLSRNNLSGRIPKYLENFPFLQNLNLSFNHF 444
           L L  N L        +    LQ + L  N +
Sbjct: 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 95.6 bits (238), Expect = 2e-21
 Identities = 71/384 (18%), Positives = 127/384 (33%), Gaps = 47/384 (12%)

Query: 9   PGKLGSLSKLRILAMHRNNLSGEIPS-SFGNLSSLEALSASANQFVGQIPETLSQLKRML 67
                 L  L+ L + +      I + +F  LSSL  L    NQF+       + L  + 
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106

Query: 68  YLLLGVNKL-SGEIPFSIY-NLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQF 125
            L L    L    +  + +  L+SL  + +  N ++   P+     +    VL+L  N+ 
Sbjct: 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166

Query: 126 TGPIPASI---SNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEF 182
              I           +   L ++             L  +    +     GN        
Sbjct: 167 KS-ICEEDLLNFQGKHFTLLRLSSI----------TLQDMNEYWLGWEKCGN-------- 207

Query: 183 VNSLVNASRLELLQISDNNFGGMLPEAVGNL--STRLRILIVGNNQ-----LFGNIPSGL 235
                  + +  L +S N F   + +   +    T+++ LI+ N+               
Sbjct: 208 ---PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264

Query: 236 RNLV-------NLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSI-GNLT 287
            N          ++   L  ++    +         L++L L  N+   +I  +    LT
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLT 323

Query: 288 LLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVI-GLSSLSIYLDLSQN 346
            L+ LN  +N L             L  L+LS N++   +  +   GL +L   L L  N
Sbjct: 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLK-ELALDTN 381

Query: 347 QLNGPLPSNFGILKNLGAIDISEN 370
           QL       F  L +L  I +  N
Sbjct: 382 QLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 47/262 (17%), Positives = 80/262 (30%), Gaps = 24/262 (9%)

Query: 239 VNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSI-GNLTLLITLNFEEN 297
            ++ ++ L  N        S   L  LQ L +E       I ++    L+ LI L  + N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 298 MLEGSIPSSLGKCQNLISLNLSNNNL-SGTIPTEV-IGLSSLSIYLDLSQNQLNGPLPSN 355
                   +     NL  L L+  NL    +       L+SL   L L  N +    P++
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE-MLVLRDNNIKKIQPAS 148

Query: 356 -FGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIEN-- 412
            F  ++    +D++ NK+   I                            + LR      
Sbjct: 149 FFLNMRRFHVLDLTFNKVK-SICEED---------------LLNFQGKHFTLLRLSSITL 192

Query: 413 LDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGI 472
            D++   L             +  L+LS N F+ E   K  F   +   I          
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK-ESMAKRFFDAIAGTKIQSLILSNSYN 251

Query: 473 SELHLSTCSIKESKQSRSRSLK 494
                   + K+      + L+
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLE 273

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 93.6 bits (233), Expect = 4e-21
 Identities = 46/267 (17%), Positives = 93/267 (34%), Gaps = 17/267 (6%)

Query: 190 SRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGL-RNLVNLEFLHLGG 248
             ++ L +S+N    +    +      L+ L++ +N +   I      +L +LE L L  
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRC-VNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSY 109

Query: 249 NQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSI-GNLTLLITLNFEENMLEGSIPS-S 306
           N  +         L  L  L L GN +     +S+  +LT L  L          I    
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 307 LGKCQNLISLNLSNNNLSGTIPTEVI-GLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAI 365
                 L  L +  ++L  +   + +  + ++S +L L   Q    L     +  ++  +
Sbjct: 170 FAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVS-HLILHMKQHILLLEIFVDVTSSVECL 227

Query: 366 DISENKLSGQIPSSIGS--------CTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSR 417
           ++ +  L     S + +              + +        +   L+ + G+  L+ SR
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286

Query: 418 NNLSGRIPKYLENFPFLQNLNLSFNHF 444
           N L        +    LQ + L  N +
Sbjct: 287 NQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.6 bits (207), Expect = 9e-18
 Identities = 56/284 (19%), Positives = 102/284 (35%), Gaps = 41/284 (14%)

Query: 98  NQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLK 157
           N++   + +       NL+ L L  N                    I ++ FS       
Sbjct: 62  NRIT-YISNSDLQRCVNLQALVLTSNGIN----------------TIEEDSFSS------ 98

Query: 158 ILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRL 217
            L  LE + +S N+L N     L   +     S L  L +  N +  +   ++ +  T+L
Sbjct: 99  -LGSLEHLDLSYNYLSN-----LS-SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151

Query: 218 RILIVGNNQLFGNIPSG-LRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFW 276
           +IL VGN   F  I       L  LE L +  +      P S+  +  +  L L   +  
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211

Query: 277 GEIPSSIGNLTLLITLNFEENMLEG----SIPS----SLGKCQNLISLNLSNNNLSGTIP 328
             +   +   + +  L   +  L+      + +    SL K     ++ +++ +L   + 
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVM 270

Query: 329 TEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKL 372
             +  +S L   L+ S+NQL       F  L +L  I +  N  
Sbjct: 271 KLLNQISGLL-ELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 53/228 (23%), Positives = 85/228 (37%), Gaps = 33/228 (14%)

Query: 223 GNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSS 282
           G++    +IPSGL     ++ L L  N+ T      +     LQ L L  N         
Sbjct: 38  GSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI------- 88

Query: 283 IGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEV-IGLSSLSIYL 341
                         N +E    SSLG   +L  L+LS N LS  + +     LSSL+ +L
Sbjct: 89  --------------NTIEEDSFSSLG---SLEHLDLSYNYLS-NLSSSWFKPLSSLT-FL 129

Query: 342 DLSQNQLNG-PLPSNFGILKNLGAIDISENKLSGQIPSSI-GSCTRLEQLVMNGNFFQGN 399
           +L  N        S F  L  L  + +       +I        T LE+L ++ +  Q  
Sbjct: 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189

Query: 400 IPSSLSSLRGIENLDLSRNNLSGRIPKYL-ENFPFLQNLNLSFNHFEG 446
            P SL S++ + +L L        + +   +    ++ L L     + 
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT 236

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.7 bits (137), Expect = 6e-09
 Identities = 38/219 (17%), Positives = 72/219 (32%), Gaps = 26/219 (11%)

Query: 9   PGKLGSLSKLRILAMHRNNLSGEIPSS-FGNLSSLEALSASANQFVGQIPE-TLSQLKRM 66
                 LS L  L +  N       +S F +L+ L+ L         +I     + L  +
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176

Query: 67  LYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFT 126
             L +  + L    P S+ ++ +++++ + + Q    L         ++E L L      
Sbjct: 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLD 235

Query: 127 GPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSL 186
               + +S               +G+  SL        V I+   L        + +  L
Sbjct: 236 TFHFSELS---------------TGETNSLIKKFTFRNVKITDESL-------FQVMKLL 273

Query: 187 VNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNN 225
              S L  L+ S N    +       L T L+ + +  N
Sbjct: 274 NQISGLLELEFSRNQLKSVPDGIFDRL-TSLQKIWLHTN 311

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.5 bits (225), Expect = 3e-20
 Identities = 47/277 (16%), Positives = 99/277 (35%), Gaps = 22/277 (7%)

Query: 190 SRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHLGG 248
               LL + +N+   +  +    L   L  L++ NN++   I       L  L+ L++  
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGL-QHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISK 111

Query: 249 NQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSI-GNLTLLITLNFEENML-EGSIPSS 306
           N     IP ++     L  L +  N+   ++P  +   L  +  +    N L        
Sbjct: 112 NHLV-EIPPNL--PSSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167

Query: 307 LGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAID 366
                 L  L +S   L+  IP ++    +L+  L L  N++      +      L  + 
Sbjct: 168 AFDGLKLNYLRISEAKLT-GIPKDL--PETLN-ELHLDHNKIQAIELEDLLRYSKLYRLG 223

Query: 367 ISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIP- 425
           +  N++      S+     L +L ++ N     +P+ L  L+ ++ + L  NN++ ++  
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGV 281

Query: 426 ------KYLENFPFLQNLNLSFNHFEGEVPIKGVFSN 456
                  +     +   ++L  N           F  
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 57/283 (20%), Positives = 98/283 (34%), Gaps = 24/283 (8%)

Query: 98  NQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLK 157
           N +   L  D    L +L  L L  N+ +     + S    L +L I+KN    ++P   
Sbjct: 64  NDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP-N 120

Query: 158 ILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRL 217
           +   L  + I  N +    K              +  +++  N       E       +L
Sbjct: 121 LPSSLVELRIHDNRIRKVPK------GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174

Query: 218 RILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWG 277
             L +   +L   IP  L     L  LHL  N+        ++   KL RL L  N+   
Sbjct: 175 NYLRISEAKL-TGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231

Query: 278 EIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEV------ 331
               S+  L  L  L+ + N L   +P+ L   + L  + L  NN++  +          
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGF 289

Query: 332 -IGLSSLSIYLDLSQNQLNGPL--PSNFGILKNLGAIDISENK 371
            +  +  +  + L  N +      P+ F  + +  AI     K
Sbjct: 290 GVKRAYYN-GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 59/299 (19%), Positives = 100/299 (33%), Gaps = 73/299 (24%)

Query: 9   PGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLY 68
                 L KL+ L + +N+L  EIP      SSL  L    N+         S L+ M  
Sbjct: 95  EKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNC 151

Query: 69  LLLGVNKL-SGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG 127
           + +G N L +       ++   LNY+ +   +L   +P DL      L  L+L  N+   
Sbjct: 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQ- 206

Query: 128 PIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLV 187
                           I                KL  +G+  N +               
Sbjct: 207 ---------------AIELEDLLR-------YSKLYRLGLGHNQIRM------------- 231

Query: 188 NASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLG 247
                    I + +   +           LR L + NN+L   +P+GL +L  L+ ++L 
Sbjct: 232 ---------IENGSLSFL---------PTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLH 272

Query: 248 GNQFTGRIP-------GSIVDLYKLQRLALEGN--KFWGEIPSSIGNLTLLITLNFEEN 297
            N  T ++        G  V       ++L  N   +W   P++   +T  + + F   
Sbjct: 273 TNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 17/182 (9%)

Query: 312 NLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENK 371
           +L  +  S+  L   +P     +S  +  LDL  N ++     +F  L++L A+ +  NK
Sbjct: 34  HLRVVQCSDLGLK-AVPK---EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 372 LSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKY-LEN 430
           +S     +     +L++L ++ N     IP +L     +  L +  N +  ++PK     
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIR-KVPKGVFSG 145

Query: 431 FPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGIS--------ELHLSTCSI 482
              +  + +  N  E      G F       +  ++    GI         ELHL    I
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKI 205

Query: 483 KE 484
           + 
Sbjct: 206 QA 207

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 10/124 (8%)

Query: 9   PGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLY 68
              L   SKL  L +  N +      S   L +L  L    N+   ++P  L  LK +  
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV 268

Query: 69  LLLGVNKLSGEIP-------FSIYNLSSLNYICVPVNQLQ-GSLPSDLGFTLPNLEVLNL 120
           + L  N ++ ++              +  N I +  N +    +       + +   +  
Sbjct: 269 VYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

Query: 121 CRNQ 124
              +
Sbjct: 328 GNYK 331

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 90.1 bits (224), Expect = 3e-20
 Identities = 52/226 (23%), Positives = 91/226 (40%), Gaps = 8/226 (3%)

Query: 224 NNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNK--FWGEIPS 281
           N++   ++P+G+    +   L L  N+      G    L +L +L+L  N   F G    
Sbjct: 15  NSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72

Query: 282 SIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEV-IGLSSLSIY 340
           S    T L  L+   N +  ++ S+    + L  L+  ++NL       V + L +L IY
Sbjct: 73  SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IY 130

Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSI-GSCTRLEQLVMNGNFFQGN 399
           LD+S           F  L +L  + ++ N         I      L  L ++    +  
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190

Query: 400 IPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE 445
            P++ +SL  ++ L++S NN         +    LQ L+ S NH  
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.0 bits (216), Expect = 4e-19
 Identities = 47/238 (19%), Positives = 91/238 (38%), Gaps = 10/238 (4%)

Query: 190 SRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQL-FGNIPSG-LRNLVNLEFLHLG 247
           S    L++  N    +       L T+L  L + +N L F    S       +L++L L 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKL-TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 248 GNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSS--IGNLTLLITLNFEENMLEGSIPS 305
            N     +  + + L +L+ L  + +    ++       +L  LI L+        +   
Sbjct: 87  FNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144

Query: 306 SLGKCQNLISLNLSNNNLSGTIPTEV-IGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGA 364
                 +L  L ++ N+       ++   L +L+ +LDLSQ QL    P+ F  L +L  
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT-FLDLSQCQLEQLSPTAFNSLSSLQV 203

Query: 365 IDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSL-RGIENLDLSRNNLS 421
           +++S N               L+ L  + N    +    L      +  L+L++N+ +
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 52/276 (18%), Positives = 93/276 (33%), Gaps = 40/276 (14%)

Query: 103 SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKL 162
           S+P+ +     +   L L  N+                   +    F         L +L
Sbjct: 21  SVPTGI---PSSATRLELESNKLQ----------------SLPHGVFDK-------LTQL 54

Query: 163 EWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIV 222
             + +S N L            +    + L+ L +S N     +      L  +L  L  
Sbjct: 55  TKLSLSSNGLSFKGCCSQSDFGT----TSLKYLDLSFNGVI-TMSSNFLGL-EQLEHLDF 108

Query: 223 GNNQLFGNIPSGL-RNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPS 281
            ++ L       +  +L NL +L +          G    L  L+ L + GN F      
Sbjct: 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168

Query: 282 SI-GNLTLLITLNFEENMLEGSIPSSLGKC-QNLISLNLSNNNLSGTIPTEVI-GLSSLS 338
            I   L  L  L+  +  LE  +  +      +L  LN+S+NN   ++ T     L+SL 
Sbjct: 169 DIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQ 226

Query: 339 IYLDLSQNQLNGPLPSNF-GILKNLGAIDISENKLS 373
             LD S N +             +L  +++++N  +
Sbjct: 227 -VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.0 bits (185), Expect = 4e-15
 Identities = 50/264 (18%), Positives = 86/264 (32%), Gaps = 39/264 (14%)

Query: 18  LRILAMHRNNLSGEIPSSFGNLSSLEALSASANQ--FVGQIPETLSQLKRMLYLLLGVNK 75
              L +  N L       F  L+ L  LS S+N   F G   ++      + YL L  N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 76  LSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFT-LPNLEVLNLCRNQFTGPIPASIS 134
           +   +  +   L  L ++    + L+  +     F  L NL  L++              
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR-------- 139

Query: 135 NASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLEL 194
                   V     F+G       L  LE + ++ N        D+           L  
Sbjct: 140 --------VAFNGIFNG-------LSSLEVLKMAGNSFQENFLPDI-----FTELRNLTF 179

Query: 195 LQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHLGGNQFTG 253
           L +S      + P A  +L + L++L + +N    ++ +   + L +L+ L    N    
Sbjct: 180 LDLSQCQLEQLSPTAFNSL-SSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIM- 236

Query: 254 RIPGSIVD--LYKLQRLALEGNKF 275
                 +      L  L L  N F
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 33/221 (14%)

Query: 9   PGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPE--TLSQLKRM 66
                  + L+ L +  N +   + S+F  L  LE L    +    Q+ E      L+ +
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNL 128

Query: 67  LYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFT 126
           +YL +               LSSL  + +  N  Q +   D+   L NL  L+L + Q  
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

Query: 127 GPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSL 186
                            ++   F+        L  L+ + +S N+  +     L+     
Sbjct: 189 ----------------QLSPTAFNS-------LSSLQVLNMSHNNFFS-----LDT-FPY 219

Query: 187 VNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQL 227
              + L++L  S N+      + + +  + L  L +  N  
Sbjct: 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF--FQG 398
           +  +   L   +P+  GI  +   +++  NKL           T+L +L ++ N   F+G
Sbjct: 12  IRCNSKGLTS-VPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 399 NIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSN 456
               S      ++ LDLS N +   +         L++L+   ++ + ++    VF +
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLS 124

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 89.7 bits (223), Expect = 3e-20
 Identities = 44/213 (20%), Positives = 85/213 (39%), Gaps = 8/213 (3%)

Query: 212 NLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLAL 270
            +    + + +  N++  ++P+   R   NL  L L  N        +   L  L++L L
Sbjct: 29  GIPAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 271 EGNKFWGEIPSSI-GNLTLLITLNFEENMLEGSIPS-SLGKCQNLISLNLSNNNLSGTIP 328
             N     +  +    L  L TL+ +   L+  +          L  L L +N L   +P
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALP 145

Query: 329 TEV-IGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLE 387
            +    L +L+ +L L  N+++      F  L +L  + + +N+++   P +     RL 
Sbjct: 146 DDTFRDLGNLT-HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 388 QLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL 420
            L +  N        +L+ LR ++ L L+ N  
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 89.3 bits (222), Expect = 4e-20
 Identities = 55/223 (24%), Positives = 88/223 (39%), Gaps = 10/223 (4%)

Query: 224 NNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSI 283
             Q    +P G+      + + L GN+ +     S      L  L L  N     I ++ 
Sbjct: 19  PQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAA 75

Query: 284 -GNLTLLITLNFEENMLEGSIPSS-LGKCQNLISLNLSNNNLSGTIPTEV-IGLSSLSIY 340
              L LL  L+  +N    S+  +       L +L+L    L   +   +  GL++L  Y
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQ-Y 133

Query: 341 LDLSQNQLNGPLPSN-FGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGN 399
           L L  N L   LP + F  L NL  + +  N++S     +      L++L+++ N     
Sbjct: 134 LYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 400 IPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFN 442
            P +   L  +  L L  NNLS    + L     LQ L L+ N
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 56/225 (24%), Positives = 86/225 (38%), Gaps = 16/225 (7%)

Query: 129 IPASISNASNLMRLVIAKNGFSGKVP-SLKILHKLEWVGISRNHLGNGKKDDLEFVNSLV 187
           +P  I   +   R+ +  N  S     S +    L  + +  N L            +  
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA------AAFT 77

Query: 188 NASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHL 246
             + LE L +SDN     +  A  +   RL  L +    L   +  G  R L  L++L+L
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYL 136

Query: 247 GGNQFTGRIP-GSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPS 305
             N     +P  +  DL  L  L L GN+       +   L  L  L   +N +    P 
Sbjct: 137 QDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 306 SLGKCQNLISLNLSNNNLSGTIPTEVI-GLSSLSIYLDLSQNQLN 349
           +      L++L L  NNLS  +PTE +  L +L  YL L+ N   
Sbjct: 196 AFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQ-YLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.5 bits (168), Expect = 6e-13
 Identities = 44/258 (17%), Positives = 80/258 (31%), Gaps = 58/258 (22%)

Query: 18  LRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLS 77
            + + +H N +S    +SF    +L  L   +N          + L  +  L L  N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 78  GEIPFSI-YNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNA 136
             +  +  + L  L+ + +    LQ  L   L   L  L+ L L  N             
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ---------- 142

Query: 137 SNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQ 196
                  +  + F         L  L  + +  N + +                      
Sbjct: 143 ------ALPDDTFRD-------LGNLTHLFLHGNRISS---------------------- 167

Query: 197 ISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHLGGNQFTGRI 255
           + +  F G+           L  L++  N++  ++     R+L  L  L+L  N  +   
Sbjct: 168 VPERAFRGL---------HSLDRLLLHQNRV-AHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 256 PGSIVDLYKLQRLALEGN 273
             ++  L  LQ L L  N
Sbjct: 218 TEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 13/198 (6%)

Query: 9   PGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIP-ETLSQLKRML 67
                +   L IL +H N L+    ++F  L+ LE L  S N  +  +   T   L R+ 
Sbjct: 49  AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108

Query: 68  YLLLGVNKLSGEIPFSI-YNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFT 126
            L L    L  E+   +   L++L Y+ +  N LQ +LP D    L NL  L L  N+ +
Sbjct: 109 TLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 127 GPIPASISNASNLMRLVIAKNGFSGKVPS--LKILHKLEWVGISRNHLGNGKKDDLEFVN 184
                +     +L RL++ +N  +  V     + L +L  + +  N+L     +      
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTE------ 219

Query: 185 SLVNASRLELLQISDNNF 202
           +L     L+ L+++DN +
Sbjct: 220 ALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 40/183 (21%), Positives = 63/183 (34%), Gaps = 12/183 (6%)

Query: 278 EIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEV-IGLSS 336
            +P  I        +    N +     +S   C+NL  L L +N L+  I      GL+ 
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLAL 81

Query: 337 LSIYLDLSQNQLNGPLPSN-FGILKNLGAIDISENKLSGQIPSSI-GSCTRLEQLVMNGN 394
           L   LDLS N     +    F  L  L  + +    L  ++   +      L+ L +  N
Sbjct: 82  LE-QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDN 139

Query: 395 FFQGNIPS-SLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGV 453
             Q  +P  +   L  + +L L  N +S    +       L  L L  N     V     
Sbjct: 140 ALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVH-PHA 196

Query: 454 FSN 456
           F +
Sbjct: 197 FRD 199

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 87.3 bits (216), Expect = 2e-18
 Identities = 57/331 (17%), Positives = 102/331 (30%), Gaps = 66/331 (19%)

Query: 32  IPSSFGNLSSLEALSAS--ANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSS 89
           I     N  SL   S     +           + ++        N+    +   +  ++ 
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQ 60

Query: 90  LNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGF 149
            + + +    L  SLP +L    P + VL + +N     +P   ++              
Sbjct: 61  FSELQLNRLNLS-SLPDNLP---PQITVLEITQNALI-SLPELPAS-------------- 101

Query: 150 SGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSL-VNASRLELLQISDNNFGGMLPE 208
                       LE++    N L           ++L    + L+ L + +N    MLPE
Sbjct: 102 ------------LEYLDACDNRL-----------STLPELPASLKHLDVDNNQLT-MLPE 137

Query: 209 AVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRL 268
               L      +   NNQL   +P    +L   E L +  NQ T  +P        L+ L
Sbjct: 138 LPALL----EYINADNNQL-TMLPELPTSL---EVLSVRNNQLT-FLPELPE---SLEAL 185

Query: 269 ALEGNKFWGEIPSSIGNLT----LLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLS 324
            +  N     +P+            I     EN +   IP ++       ++ L +N LS
Sbjct: 186 DVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243

Query: 325 GTIPTEVIGLSSLSIYLDLSQNQLNGPLPSN 355
             I   +   ++   Y              N
Sbjct: 244 SRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.5 bits (206), Expect = 3e-17
 Identities = 59/313 (18%), Positives = 106/313 (33%), Gaps = 40/313 (12%)

Query: 26  NNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIY 85
           +    +  S++           + N+ V  + E    + +   L L    LS  +P ++ 
Sbjct: 23  SGTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQLNRLNLS-SLPDNL- 78

Query: 86  NLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIA 145
               +  + +  N L  SLP        +LE L+ C N+ +  +P      ++L  L + 
Sbjct: 79  -PPQITVLEITQNALI-SLPELPA----SLEYLDACDNRLST-LPELP---ASLKHLDVD 128

Query: 146 KNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGM 205
            N  +  +P L     LE++    N L                 + LE+L + +N     
Sbjct: 129 NNQLT-MLPEL--PALLEYINADNNQLT-------MLPELP---TSLEVLSVRNNQLTF- 174

Query: 206 LPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLE----FLHLGGNQFTGRIPGSIVD 261
           LPE   +    L  L V  N L  ++P+      + E    F     N+ T  IP +I+ 
Sbjct: 175 LPELPES----LEALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILS 228

Query: 262 LYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNN 321
           L     + LE N     I  S+   T     +        S        + L   +    
Sbjct: 229 LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLA--DAVTA 286

Query: 322 NLSGTIPTEVIGL 334
                  ++V  +
Sbjct: 287 WFPENKQSDVSQI 299

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 31/176 (17%), Positives = 49/176 (27%), Gaps = 13/176 (7%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLE----ALSASANQFVGQI 56
            N+L   +P    SL  L +     N L   +P+        E          N+    I
Sbjct: 169 NNQL-TFLPELPESLEALDV---STNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HI 222

Query: 57  PETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLE 116
           PE +  L     ++L  N LS  I  S+   ++      P      S         P  +
Sbjct: 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLAD 282

Query: 117 VLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHL 172
                   F     + +S   +        N FS  +  L            R  +
Sbjct: 283 ---AVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQV 335

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 82.5 bits (203), Expect = 7e-17
 Identities = 51/318 (16%), Positives = 116/318 (36%), Gaps = 31/318 (9%)

Query: 152 KVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVG 211
           ++       +     + +  +      D    N L +   ++ +  ++++   +  + + 
Sbjct: 13  QIFPDDAFAETIKDNLKKKSV-----TDAVTQNELNS---IDQIIANNSDIKSV--QGIQ 62

Query: 212 NLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE 271
            L   +  L +  N+L  +I   L NL NL +L L  N+    +   + DL KL+ L+LE
Sbjct: 63  YL-PNVTKLFLNGNKL-TDI-KPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLE 117

Query: 272 GNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEV 331
            N       + + +L  L +L    N +  +  + L +   L +L+L +N +     +++
Sbjct: 118 HNGI--SDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI-----SDI 168

Query: 332 IGLSSLS--IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQL 389
           + L+ L+    L LS+N ++         LKNL  +++   +   +  +   +      +
Sbjct: 169 VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 390 VMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449
                      P  +S     E  ++  +            +  +         F G V 
Sbjct: 227 KNTDGSLV--TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR-FHGRVT 283

Query: 450 IKGVFSNSSAISIDGNDN 467
                  + +  +DG   
Sbjct: 284 QPLKEVYTVSYDVDGTVI 301

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.5 bits (190), Expect = 3e-15
 Identities = 58/335 (17%), Positives = 118/335 (35%), Gaps = 29/335 (8%)

Query: 42  LEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQ 101
           +      +   + QI          +   L    ++  +  +   L+S++ I    + + 
Sbjct: 1   MGETITVSTP-IKQI-FPDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDI- 55

Query: 102 GSLPSDLGF--TLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKIL 159
                 +     LPN+  L L  N+ T   P  ++N  NL  L + +N     + SLK L
Sbjct: 56  ----KSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSSLKDL 108

Query: 160 HKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRI 219
            KL+ + +  N +      D+  +  L     LE L + +N    +    +  L T+L  
Sbjct: 109 KKLKSLSLEHNGI-----SDINGLVHLPQ---LESLYLGNNKITDI--TVLSRL-TKLDT 157

Query: 220 LIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEI 279
           L + +NQ+  +I   L  L  L+ L+L  N  +     ++  L  L  L L   +   + 
Sbjct: 158 LSLEDNQI-SDI-VPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKP 213

Query: 280 PSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSI 339
            +   NL +  T+   +  L      S        ++       +  +        ++  
Sbjct: 214 INHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGK 273

Query: 340 YLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSG 374
                  ++  PL   + +  ++    I     +G
Sbjct: 274 AKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAG 308

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 40/191 (20%), Positives = 77/191 (40%), Gaps = 40/191 (20%)

Query: 12  LGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLL 71
           L +L  L  L +  N +  ++ SS  +L  L++LS   N  +  I   L  L ++  L L
Sbjct: 83  LTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYL 138

Query: 72  GVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPA 131
           G NK++        +++ L+                    L  L+ L+L  NQ +  +P 
Sbjct: 139 GNNKIT--------DITVLS-------------------RLTKLDTLSLEDNQISDIVP- 170

Query: 132 SISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASR 191
            ++  + L  L ++KN  S  + +L  L  L+ + +      N      + +N   N   
Sbjct: 171 -LAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLN------KPINHQSNLVV 222

Query: 192 LELLQISDNNF 202
              ++ +D + 
Sbjct: 223 PNTVKNTDGSL 233

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 80.1 bits (198), Expect = 3e-16
 Identities = 69/425 (16%), Positives = 131/425 (30%), Gaps = 49/425 (11%)

Query: 16  SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNK 75
                       +      S   L++L +L    +     +   + +L  +  L+   N 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNN 75

Query: 76  LSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISN 135
           ++  +  S    ++L Y+    N+L  +L       L  L  LN   N+ T      +S 
Sbjct: 76  IT-TLDLS--QNTNLTYLACDSNKLT-NLDVT---PLTKLTYLNCDTNKLT---KLDVSQ 125

Query: 136 ASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELL 195
              L  L  A+N  +     +    +L  +    N               +   ++L  L
Sbjct: 126 NPLLTYLNCARNTLT--EIDVSHNTQLTELDCHLNKKIT--------KLDVTPQTQLTTL 175

Query: 196 QISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRI 255
             S N    +    V      L  L    N +   +   L   + L FL    N+ T  I
Sbjct: 176 DCSFNKITEL---DVSQN-KLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EI 227

Query: 256 PGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLIS 315
              +  L +L       N    E+   +  L+ L TL+  +  L   I   L     LI 
Sbjct: 228 D--VTPLTQLTYFDCSVNPL-TELD--VSTLSKLTTLHCIQTDLL-EID--LTHNTQLIY 279

Query: 316 LNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQ 375
                      +  +V   + L   LD     +      +      L  + ++  +L+ +
Sbjct: 280 FQAEGCRKIKEL--DVTHNTQLY-LLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-E 332

Query: 376 IPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQ 435
           +   +   T+L+ L       Q    SS+  +  + N   +         + L N     
Sbjct: 333 LD--VSHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTI 388

Query: 436 NLNLS 440
            ++  
Sbjct: 389 AVSPD 393

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 61/334 (18%), Positives = 102/334 (30%), Gaps = 44/334 (13%)

Query: 112 LPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNH 171
           L  L  L    N  T      +S  +NL  L    N  +     +  L KL ++    N 
Sbjct: 63  LTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN--LDVTPLTKLTYLNCDTNK 117

Query: 172 LGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNI 231
           L             +     L  L  + N     L E   + +T+L  L    N+    +
Sbjct: 118 LTK---------LDVSQNPLLTYLNCARNT----LTEIDVSHNTQLTELDCHLNKKITKL 164

Query: 232 PSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLIT 291
              +     L  L    N+ T      +     L RL  + N    ++   +     L  
Sbjct: 165 D--VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNI-TKLD--LNQNIQLTF 216

Query: 292 LNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGP 351
           L+   N L   I   +     L   + S N L+  +      LS L+  L   Q  L   
Sbjct: 217 LDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVS--TLSKLT-TLHCIQTDLLEI 269

Query: 352 LPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIE 411
             ++   L    A    + K        +   T+L  L              LS    + 
Sbjct: 270 DLTHNTQLIYFQAEGCRKIK-----ELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLV 321

Query: 412 NLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE 445
            L L+   L+  +   + +   L++L+    H +
Sbjct: 322 YLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.4 bits (178), Expect = 8e-14
 Identities = 58/347 (16%), Positives = 109/347 (31%), Gaps = 43/347 (12%)

Query: 110 FTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISR 169
           F   N         +       S    + L  L    +  +  +  ++ L  L  +  + 
Sbjct: 15  FPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTS 73

Query: 170 NHLGN---GKKDDLEFVN---------SLVNASRLELLQISDNNFGGMLPEAVGNLSTRL 217
           N++      +  +L ++           +   ++L  L    N     L +   + +  L
Sbjct: 74  NNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNK----LTKLDVSQNPLL 129

Query: 218 RILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWG 277
             L    N L   I   + +   L  L    N+   ++   +    +L  L    NK   
Sbjct: 130 TYLNCARNTL-TEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI-- 182

Query: 278 EIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSL 337
                +    LL  LN + N +   +   L +   L  L+ S+N L+  I   V  L+ L
Sbjct: 183 -TELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQL 235

Query: 338 SIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ 397
           + Y D S N L      +   L  L  +   +  L       +   T+L      G   +
Sbjct: 236 T-YFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGC--R 286

Query: 398 GNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHF 444
                 ++    +  LD     ++  +   L   P L  L L+    
Sbjct: 287 KIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTEL 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.0 bits (164), Expect = 5e-12
 Identities = 61/371 (16%), Positives = 121/371 (32%), Gaps = 46/371 (12%)

Query: 12  LGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLL 71
           +  L+KL  L    N L+            L  L+ + N    +I   +S   ++  L  
Sbjct: 102 VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDC 155

Query: 72  GVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFT-LPNLEVLNLCRNQFTGPIP 130
            +NK   ++  +    + L  +    N++     ++L  +    L  LN   N  T    
Sbjct: 156 HLNKKITKLDVT--PQTQLTTLDCSFNKI-----TELDVSQNKLLNRLNCDTNNITKL-- 206

Query: 131 ASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNAS 190
             ++    L  L  + N  +     +  L +L +   S N L             +   S
Sbjct: 207 -DLNQNIQLTFLDCSSNKLTE--IDVTPLTQLTYFDCSVNPLTE---------LDVSTLS 254

Query: 191 RLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQ 250
           +L  L     +   +      +L+   +++              + +   L  L      
Sbjct: 255 KLTTLHCIQTDLLEI------DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAG 308

Query: 251 FTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKC 310
            T      +    KL  L L   +   E+   + + T L +L+     ++     S+GK 
Sbjct: 309 IT---ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKI 360

Query: 311 QNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNG---PLPSNFGILKNLGAIDI 367
             L +   +      T+P E +  +SL+I +        G    +    G + +     I
Sbjct: 361 PALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTI 419

Query: 368 SENKLSGQIPS 378
           +   LS   P+
Sbjct: 420 TWENLSTDNPA 430

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 75/424 (17%), Positives = 132/424 (31%), Gaps = 73/424 (17%)

Query: 12  LGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLL 71
           L   + L  LA   N L+  +      L+ L  L+   N+        +SQ   + YL  
Sbjct: 81  LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKL---TKLDVSQNPLLTYLNC 134

Query: 72  GVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPA 131
             N L+ EI  S  + + L  +   +N+    L          L  L+   N+ T     
Sbjct: 135 ARNTLT-EIDVS--HNTQLTELDCHLNKKITKLDVT---PQTQLTTLDCSFNKITE---L 185

Query: 132 SISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASR 191
            +S    L RL    N  +     L    +L ++  S N                     
Sbjct: 186 DVSQNKLLNRLNCDTNNITK--LDLNQNIQLTFLDCSSN--------------------- 222

Query: 192 LELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQF 251
               ++++ +   +         T+L       N L   +      L  L  LH      
Sbjct: 223 ----KLTEIDVTPL---------TQLTYFDCSVNPL-TELDVS--TLSKLTTLHCIQTDL 266

Query: 252 TGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQ 311
              I  +     +L     EG +   E+   + + T L  L+ +   +   +   L +  
Sbjct: 267 L-EIDLT--HNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELD--LSQNP 318

Query: 312 NLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENK 371
            L+ L L+N  L+  +   V   + L   L      +     S+ G +  L     +E +
Sbjct: 319 KLVYLYLNNTELT-ELD--VSHNTKLK-SLSCVNAHIQD--FSSVGKIPALNNNFEAEGQ 372

Query: 372 LSGQIPSSIGSCTRLEQLVMNGNF-FQGNIPSSLSSLRGIENL---DLSRNNLSGRIPKY 427
               +P    +   L   V        GN  +      G+ +     ++  NLS   P  
Sbjct: 373 TI-TMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAV 431

Query: 428 LENF 431
              F
Sbjct: 432 TYTF 435

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.5 bits (188), Expect = 2e-15
 Identities = 53/276 (19%), Positives = 89/276 (32%), Gaps = 23/276 (8%)

Query: 188 NASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN---LEFL 244
               LE L    +    +        S  L+ L V   ++   I  G   ++    L+ L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 245 HLGGNQFTGRIPGSIVDLYKLQRLALE-GNKFWGEIPSSIGNL-----TLLITLNFEENM 298
            L   + TG  P  +++        L   N  W    + +  L       L  L+  +  
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 299 LEGSIPSSLGKCQNLISLNLSNNNLSGTIP----TEVIGLSSLSIYLDLSQNQLN---GP 351
                   +     L +L+LS+N   G          +   +L   L L    +    G 
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ-VLALRNAGMETPSGV 219

Query: 352 LPSNFGILKNLGAIDISENKLSGQIPSSIGS-CTRLEQLVMNGNFFQGNIPSSLSSLRGI 410
             +       L  +D+S N L     +      ++L  L ++    +       + L   
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL--- 276

Query: 411 ENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEG 446
             LDLS N L  R P   +  P + NL+L  N F  
Sbjct: 277 SVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 3e-13
 Identities = 54/278 (19%), Positives = 98/278 (35%), Gaps = 15/278 (5%)

Query: 8   VPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQL---K 64
           V    G  S   +L            +      SL+ L+  A +   +I     ++    
Sbjct: 36  VELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGIS 95

Query: 65  RMLYLLLGVNKLSGEIPFSIY-----NLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLN 119
            +  L L   +++G  P  +      +L+ LN   V        L     +  P L+VL+
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 120 LCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDD 179
           + +          +     L  L ++ N   G+   +  L  L++  +    L N   + 
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 180 LEFV--NSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRN 237
              V         +L+ L +S N+          +  ++L  L +    L   +P GL  
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGL-- 272

Query: 238 LVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKF 275
              L  L L  N+   R P S  +L ++  L+L+GN F
Sbjct: 273 PAKLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.4 bits (154), Expect = 3e-11
 Identities = 47/252 (18%), Positives = 72/252 (28%), Gaps = 23/252 (9%)

Query: 114 NLEVLNLCRNQFTGPIPASIS---NASNLMRLVIAKNGFSGKVPSLKI---LHKLEWVGI 167
           +L+ L +   +    I          S L  L +     +G  P   +      L  + +
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 168 SRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQL 227
                        E    L     L++L I+  +      E V      L  L + +N  
Sbjct: 129 RNVSWATRDAWLAELQQWL--KPGLKVLSIAQAHSLNFSCEQVRVFPA-LSTLDLSDNPE 185

Query: 228 FGNI-------PSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIP 280
            G         P     L  L   + G    +G          +LQ L L  N       
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 281 SSI-GNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSI 339
           +      + L +LN     L+  +P  L     L  L+LS N L    P     L  +  
Sbjct: 246 APSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD-RNP-SPDELPQVG- 299

Query: 340 YLDLSQNQLNGP 351
            L L  N     
Sbjct: 300 NLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 39/227 (17%), Positives = 69/227 (30%), Gaps = 27/227 (11%)

Query: 231 IPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSS---IGNLT 287
           +  G R+L     L     +        I+    L+RL +   +    I      +  ++
Sbjct: 38  LYGGGRSL--EYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGIS 95

Query: 288 LLITLNFEENMLEGSIPSSLGKCQ--NLISLNLSNNNLSG--TIPTEVIGLSSLSI-YLD 342
            L  L  E   + G+ P  L +    +L  LNL N + +       E+       +  L 
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 343 LSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPS 402
           ++Q            +   L  +D+S+N   G+       C                 P 
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC-----------------PL 198

Query: 403 SLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449
              +L+ +   +      SG           LQ L+LS N       
Sbjct: 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 7/122 (5%)

Query: 8   VPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQ-LKRM 66
            P K  +L  L +        SG   +       L+ L  S N               ++
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 67  LYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFT 126
             L L    L  ++P  +   + L+ + +  N+L    PS     LP +  L+L  N F 
Sbjct: 256 NSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLD-RNPSPDE--LPQVGNLSLKGNPFL 309

Query: 127 GP 128
             
Sbjct: 310 DS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 25/169 (14%), Positives = 54/169 (31%), Gaps = 20/169 (11%)

Query: 284 GNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLS--IYL 341
           G  +L   L   +   +    + + K  +L  L +    +   I    + +  +S    L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 342 DLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIP 401
            L   ++ G  P             ++   +S     +                +   + 
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDA----------------WLAELQ 144

Query: 402 SSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI 450
             L    G++ L +++ +      + +  FP L  L+LS N   GE  +
Sbjct: 145 QWL--KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.5 bits (181), Expect = 3e-15
 Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 12/164 (7%)

Query: 282 SIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLS--I 339
           +   +  L  +      +   + + +    N+  L ++N +      T    +S LS   
Sbjct: 39  TEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHA-----TNYNPISGLSNLE 91

Query: 340 YLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGN 399
            L +    +      N   L +L  +DIS +     I + I +  ++  + ++ N    +
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151

Query: 400 IPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNH 443
           I   L +L  +++L++  + +       +E+FP L  L      
Sbjct: 152 I-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.2 bits (170), Expect = 7e-14
 Identities = 29/184 (15%), Positives = 60/184 (32%), Gaps = 17/184 (9%)

Query: 169 RNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLF 228
              LG     ++    +    + L  + +++ N   +    +      ++ L + N    
Sbjct: 27  NGLLGQSSTANI----TEAQMNSLTYITLANINVTDL--TGIEYA-HNIKDLTINNIHA- 78

Query: 229 GNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTL 288
               + +  L NLE L + G   T     ++  L  L  L +  +     I + I  L  
Sbjct: 79  -TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137

Query: 289 LITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLS--IYLDLSQN 346
           + +++   N     I   L     L SLN+  + +      +  G+        L     
Sbjct: 138 VNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGV-----HDYRGIEDFPKLNQLYAFSQ 191

Query: 347 QLNG 350
            + G
Sbjct: 192 TIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 26/186 (13%), Positives = 58/186 (31%), Gaps = 11/186 (5%)

Query: 237 NLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEE 296
                    LG +        +   +  L  + L          + I     +  L    
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINV--TDLTGIEYAHNIKDLTINN 75

Query: 297 NMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNF 356
                   + +    NL  L +   +++      + GL+SL+  LD+S +  +  + +  
Sbjct: 76  IHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT-LLDISHSAHDDSILTKI 132

Query: 357 GILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLS 416
             L  + +ID+S N     I   + +   L+ L +  +    +    +     +  L   
Sbjct: 133 NTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH-DY-RGIEDFPKLNQLYAF 189

Query: 417 RNNLSG 422
              + G
Sbjct: 190 SQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.8 bits (156), Expect = 6e-12
 Identities = 27/161 (16%), Positives = 63/161 (39%), Gaps = 13/161 (8%)

Query: 285 NLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLS--IYLD 342
                +     ++       + +    +L  + L+N N+     T++ G+        L 
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQM---NSLTYITLANINV-----TDLTGIEYAHNIKDLT 72

Query: 343 LSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPS 402
           ++         +    L NL  + I    ++     ++   T L  L ++ +    +I +
Sbjct: 73  INNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 403 SLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNH 443
            +++L  + ++DLS N     I   L+  P L++LN+ F+ 
Sbjct: 131 KINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 26/170 (15%), Positives = 58/170 (34%), Gaps = 13/170 (7%)

Query: 35  SFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYIC 94
           +   ++SL  ++ +           +     +  L +     +   P S   LS+L  + 
Sbjct: 39  TEAQMNSLTYITLANINV--TDLTGIEYAHNIKDLTINNIHATNYNPIS--GLSNLERLR 94

Query: 95  VPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVP 154
           +    +      +L   L +L +L++  +     I   I+    +  + ++ NG    + 
Sbjct: 95  IMGKDVTSDKIPNLS-GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 155 SLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGG 204
            LK L +L+ + I  + +      D   +        L  L       GG
Sbjct: 154 PLKTLPELKSLNIQFDGV-----HDYRGIEDFPK---LNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 8/118 (6%)

Query: 12  LGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLL 71
           +  LS L  L +   +++ +   +   L+SL  L  S +     I   ++ L ++  + L
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 72  GVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGF--TLPNLEVLNLCRNQFTG 127
             N    +I   +  L  L  + +  + +      D       P L  L        G
Sbjct: 144 SYNGAITDIM-PLKTLPELKSLNIQFDGV-----HDYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 3/101 (2%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLS 61
            ++       L  L+ L +L +  +     I +    L  + ++  S N  +  I   L 
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLK 156

Query: 62  QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQG 102
            L  +  L +  + +         +   LN +      + G
Sbjct: 157 TLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 75.2 bits (185), Expect = 5e-15
 Identities = 44/236 (18%), Positives = 75/236 (31%), Gaps = 11/236 (4%)

Query: 212 NLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHLGGNQFTGRIP-GSIVDLYKLQRLA 269
           +L      L     +L   I  G      +LE + +  N     I      +L KL  + 
Sbjct: 27  DLPRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85

Query: 270 LEGNKFWGEIPSSI-GNLTLLITLNFEENMLEGSIPS-SLGKCQNLISLNLSNNNLSGTI 327
           +E       I      NL  L  L      ++  +P          + L++ +N    TI
Sbjct: 86  IEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 328 PTEVI-GLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRL 386
                 GLS  S+ L L++N +     S F   +         N L           +  
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204

Query: 387 EQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFN 442
             L ++           L +L+ +        NL  ++P  LE    L   +L++ 
Sbjct: 205 VILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 55/273 (20%), Positives = 93/273 (34%), Gaps = 48/273 (17%)

Query: 103 SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKL 162
            +PSDL     N   L     +                  VI K  FSG          L
Sbjct: 23  EIPSDL---PRNAIELRFVLTKLR----------------VIQKGAFSG-------FGDL 56

Query: 163 EWVGISRNHLGNGKKDDLEFV--NSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRIL 220
           E + IS+N +       LE +  +   N  +L  ++I   N    +          L+ L
Sbjct: 57  EKIEISQNDV-------LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109

Query: 221 IVGNNQLFGNIPSGL-RNLVNLEFLHLGGNQFTGRIP-GSIVDL-YKLQRLALEGNKFWG 277
           ++ N  +  ++P     + +    L +  N     I   S V L ++   L L  N    
Sbjct: 110 LISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167

Query: 278 EIPSSIGNLTLLITLNFEENMLEGSIPS-SLGKCQNLISLNLSNNNLSGTIPTEVI-GLS 335
           EI +S  N T L  LN  +N     +P+         + L++S   +  ++P+  +  L 
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLK 226

Query: 336 SLSIYLDLSQNQLNGPLPSNFGILKNLGAIDIS 368
            L         +    LP+    L  L    ++
Sbjct: 227 KL-RARSTYNLKK---LPT-LEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 42/279 (15%), Positives = 84/279 (30%), Gaps = 61/279 (21%)

Query: 18  LRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIP-ETLSQLKRMLYL-LLGVNK 75
              L      L      +F     LE +  S N  +  I  +  S L ++  + +   N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 76  LSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISN 135
           L    P +  NL +L Y+ +    ++  LP           +L++  N        +I  
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDN-------INIH- 142

Query: 136 ASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELL 195
                   I +N F G      IL       +++N +                       
Sbjct: 143 -------TIERNSFVGLSFESVILW------LNKNGIQE--------------------- 168

Query: 196 QISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHLGGNQFTGR 254
                     +  +  N +    + +  NN L   +P+           L +   +    
Sbjct: 169 ----------IHNSAFNGTQLDELNLSDNNNL-EELPNDVFHGASGPVILDISRTRIHSL 217

Query: 255 IPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLN 293
               + +L KL+  +    K   ++P ++  L  L+  +
Sbjct: 218 PSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEAS 252

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 10/166 (6%)

Query: 9   PGKLGSLSKLRILAMHRNNLSGEIPS-SFGNLSSLEALSASANQFVGQIPE-TLSQLKRM 66
           P    +L  L+ L +    +   +P     +      L    N  +  I   +   L   
Sbjct: 97  PEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE 155

Query: 67  L-YLLLGVNKLSGEIPFSIYNLSSLNYICV-PVNQLQGSLPSDLGFTLPNLEVLNLCRNQ 124
              L L  N +  EI  S +N + L+ + +   N L+  LP+D+        +L++ R +
Sbjct: 156 SVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTR 213

Query: 125 FTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRN 170
               +P+      NL +L         K+P+L+ L  L    ++  
Sbjct: 214 IH-SLPSYG--LENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 29/187 (15%), Positives = 61/187 (32%), Gaps = 27/187 (14%)

Query: 304 PSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLG 363
              +  C N        + ++  IP+    L   +I L     +L       F    +L 
Sbjct: 3   HHRICHCSNR-VFLCQESKVT-EIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLE 57

Query: 364 AIDISENKLSGQIPSSI-GSCTRLEQLVMNGN----FFQGNIPSSLSSLRGIENLDLSRN 418
            I+IS+N +   I + +  +  +L ++ +       +       +L +L+    L +S  
Sbjct: 58  KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ---YLLISNT 114

Query: 419 NLSGRIPKYL-ENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHL 477
            +   +P     +      L++  N     +  +  F             L      L L
Sbjct: 115 GIK-HLPDVHKIHSLQKVLLDIQDNINIHTIE-RNSF-----------VGLSFESVILWL 161

Query: 478 STCSIKE 484
           +   I+E
Sbjct: 162 NKNGIQE 168

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.3 bits (175), Expect = 6e-14
 Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 11/190 (5%)

Query: 231 IPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLI 290
           +P  L    +   LHL  N        +++   +L +L L+  +   ++    G L +L 
Sbjct: 25  LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLG 80

Query: 291 TLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVI-GLSSLSIYLDLSQNQLN 349
           TL+   N L+ S+P        L  L++S N L+ ++P   + GL  L   L L  N+L 
Sbjct: 81  TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQ-ELYLKGNELK 137

Query: 350 GPLPSNFGILKNLGAIDISENKLSGQIPSSI-GSCTRLEQLVMNGNFFQGNIPSSLSSLR 408
              P        L  + ++ N L+ ++P+ +      L+ L++  N     IP       
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH 195

Query: 409 GIENLDLSRN 418
            +    L  N
Sbjct: 196 LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 68.2 bits (167), Expect = 8e-13
 Identities = 55/226 (24%), Positives = 86/226 (38%), Gaps = 42/226 (18%)

Query: 98  NQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLK 157
             L  +LP DL     +  +L+L  N       A++   + L +L + +   + K+    
Sbjct: 20  RNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDG 74

Query: 158 ILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRL 217
            L  L  + +S N L +                               LP     L   L
Sbjct: 75  TLPVLGTLDLSHNQLQS-------------------------------LPLLGQTL-PAL 102

Query: 218 RILIVGNNQLFGNIPSGL-RNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFW 276
            +L V  N+L  ++P G  R L  L+ L+L GN+     PG +    KL++L+L  N   
Sbjct: 103 TVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161

Query: 277 GEIPSSI-GNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNN 321
            E+P+ +   L  L TL  +EN L  +IP        L    L  N
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.0 bits (143), Expect = 8e-10
 Identities = 44/232 (18%), Positives = 71/232 (30%), Gaps = 59/232 (25%)

Query: 18  LRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLS 77
             IL +  N L     ++    + L  L+    +      +    L  +  L L  N+L 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 78  GEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNAS 137
             +P     L +L  + V  N+L  SLP      L  L+ L L  N+    +P  +    
Sbjct: 91  -SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT-LPPGL---- 143

Query: 138 NLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQI 197
                       +          KLE + ++ N+L                       ++
Sbjct: 144 -----------LTP-------TPKLEKLSLANNNLT----------------------EL 163

Query: 198 SDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGN 249
                 G+           L  L++  N L   IP G      L F  L GN
Sbjct: 164 PAGLLNGL---------ENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 59/251 (23%), Positives = 83/251 (33%), Gaps = 64/251 (25%)

Query: 24  HRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFS 83
            + NL+  +P           L  S N        TL    R+  L L   +L+      
Sbjct: 18  DKRNLT-ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74

Query: 84  IYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLV 143
              L  L  + +  NQLQ SLP  LG TLP L VL++  N+ T  +P             
Sbjct: 75  --TLPVLGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTS-LPLGA---------- 119

Query: 144 IAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFG 203
                  G       L +L+ + +  N L                               
Sbjct: 120 -----LRG-------LGELQELYLKGNELKT----------------------------- 138

Query: 204 GMLPEAVGNLSTRLRILIVGNNQLFGNIPSGL-RNLVNLEFLHLGGNQFTGRIPGSIVDL 262
             LP  +   + +L  L + NN L   +P+GL   L NL+ L L  N     IP      
Sbjct: 139 --LPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS 194

Query: 263 YKLQRLALEGN 273
           + L    L GN
Sbjct: 195 HLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 8/148 (5%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLS 61
           N L       L   ++L  L + R  L+ ++    G L  L  L  S NQ    +P    
Sbjct: 41  NLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQ 97

Query: 62  QLKRMLYLLLGVNKLSGEIPFSIY-NLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNL 120
            L  +  L +  N+L+  +P      L  L  + +  N+L+ +LP  L    P LE L+L
Sbjct: 98  TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSL 155

Query: 121 CRNQFTGPIPASI-SNASNLMRLVIAKN 147
             N  T  +PA + +   NL  L++ +N
Sbjct: 156 ANNNLTE-LPAGLLNGLENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 312 NLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENK 371
           + + +N    NL+  +P     L   +  L LS+N L     +       L  +++   +
Sbjct: 11  SHLEVNCDKRNLT-ALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 372 LSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENF 431
           L+ ++    G+   L  L ++ N  Q ++P    +L  +  LD+S N L+      L   
Sbjct: 67  LT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 432 PFLQNLNLSFNH 443
             LQ L L  N 
Sbjct: 124 GELQELYLKGNE 135

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 4/117 (3%)

Query: 8   VPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRML 67
           +P    +L  L +L +  N L+     +   L  L+ L    N+     P  L+   ++ 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151

Query: 68  YLLLGVNKLSGEIPFSIY-NLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRN 123
            L L  N L+ E+P  +   L +L+ + +  N L  ++P    F    L    L  N
Sbjct: 152 KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGF-FGSHLLPFAFLHGN 205

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.3 bits (175), Expect = 7e-14
 Identities = 46/222 (20%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 233 SGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITL 292
                L N   +  G +  T  +     DL  +  L+  G          +  L  LI L
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV--TTIEGVQYLNNLIGL 68

Query: 293 NFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLS--IYLDLSQNQLNG 350
             ++N +  +  + L     +  L LS N L       V  ++ L     LDL+  Q+  
Sbjct: 69  ELKDNQI--TDLAPLKNLTKITELELSGNPL-----KNVSAIAGLQSIKTLDLTSTQITD 121

Query: 351 PLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGI 410
              +    L NL  + +  N+++    S +   T L+ L +     Q +  + L++L  +
Sbjct: 122 V--TPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNA--QVSDLTPLANLSKL 175

Query: 411 ENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKG 452
             L    N +S   P  L + P L  ++L  N      P+  
Sbjct: 176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLAN 215

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 51/259 (19%), Positives = 96/259 (37%), Gaps = 24/259 (9%)

Query: 186 LVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLH 245
               +    +    +N    + +A  +L   +  L      +   I  G++ L NL  L 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQA--DL-DGITTLSAFGTGV-TTI-EGVQYLNNLIGLE 69

Query: 246 LGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPS 305
           L  NQ T  +   + +L K+  L L GN    +  S+I  L  + TL+     +  +  +
Sbjct: 70  LKDNQIT-DLAP-LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQI--TDVT 123

Query: 306 SLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLS--IYLDLSQNQLNGPLPSNFGILKNLG 363
            L    NL  L L  N +     T +  L+ L+   YL +   Q++    +    L  L 
Sbjct: 124 PLAGLSNLQVLYLDLNQI-----TNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLT 176

Query: 364 AIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGR 423
            +   +NK+S    S + S   L ++ +  N       S L++   +  + L+   ++ +
Sbjct: 177 TLKADDNKISD--ISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTITNQ 232

Query: 424 IPKYLENFPFLQNLNLSFN 442
              Y  N      +     
Sbjct: 233 PVFYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 56/281 (19%), Positives = 110/281 (39%), Gaps = 25/281 (8%)

Query: 82  FSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMR 141
           F    L++   I    + +  ++       L  +  L+      T      +   +NL+ 
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVTTIEG--VQYLNNLIG 67

Query: 142 LVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNN 201
           L +  N  +  +  LK L K+  + +S N L      ++  +  L +   ++ L ++   
Sbjct: 68  LELKDNQIT-DLAPLKNLTKITELELSGNPL-----KNVSAIAGLQS---IKTLDLTSTQ 118

Query: 202 FGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVD 261
              +    +  L + L++L +  NQ+  NI S L  L NL++L +G  Q +   P  + +
Sbjct: 119 ITDV--TPLAGL-SNLQVLYLDLNQI-TNI-SPLAGLTNLQYLSIGNAQVSDLTP--LAN 171

Query: 262 LYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNN 321
           L KL  L  + NK      S + +L  LI ++ + N +     S L    NL  + L+N 
Sbjct: 172 LSKLTTLKADDNKI--SDISPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQ 227

Query: 322 NLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNL 362
            ++         L   ++    S   +     S+ G   + 
Sbjct: 228 TITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASP 268

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 40/193 (20%), Positives = 74/193 (38%), Gaps = 16/193 (8%)

Query: 12  LGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLL 71
           L +L+K+  L +  N L     S+   L S++ L  ++ Q     P  L+ L  +  L L
Sbjct: 81  LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYL 136

Query: 72  GVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGF--TLPNLEVLNLCRNQFTGPI 129
            +N+++   P +   L++L Y+ +   Q+     SDL     L  L  L    N+ +   
Sbjct: 137 DLNQITNISPLA--GLTNLQYLSIGNAQV-----SDLTPLANLSKLTTLKADDNKISDIS 189

Query: 130 PASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNA 189
           P  +++  NL+ + +  N  S  V  L     L  V ++   + N        +      
Sbjct: 190 P--LASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246

Query: 190 SRLELLQISDNNF 202
                  I+    
Sbjct: 247 KGPSGAPIAPATI 259

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 49/220 (22%), Positives = 83/220 (37%), Gaps = 15/220 (6%)

Query: 231 IPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSI-GNLTLL 289
           IP  L    + + L L  N        S     +LQ L L   +    I      +L+ L
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHL 78

Query: 290 ITLNFEENMLEGSIPSSL-GKCQNLISLNLSNNNLSGTIPTEVI-GLSSLSIYLDLSQNQ 347
            TL    N ++ S+         +L  L     NL+ ++    I  L +L   L+++ N 
Sbjct: 79  STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLK-ELNVAHNL 135

Query: 348 L-NGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLE----QLVMNGNFFQGNIPS 402
           + +  LP  F  L NL  +D+S NK+     + +    ++      L ++ N      P 
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 403 SLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFN 442
           +   +R ++ L L  N L        +    LQ + L  N
Sbjct: 196 AFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.8 bits (169), Expect = 4e-13
 Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 14/211 (6%)

Query: 192 LELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGL-RNLVNLEFLHLGGNQ 250
            + L +S N    +   +  +    L++L +   ++   I  G  ++L +L  L L GN 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNP 87

Query: 251 FTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSI-GNLTLLITLNFEENMLEGSIPSS--L 307
                 G+   L  LQ+L          + +   G+L  L  LN   N+++ S       
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYF 145

Query: 308 GKCQNLISLNLSNNNLSGTIPTEV----IGLSSLSIYLDLSQNQLNGPLPSNFGILKNLG 363
               NL  L+LS+N +  +I          +  L++ LDLS N +N   P  F  +  L 
Sbjct: 146 SNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLK 203

Query: 364 AIDISENKLSGQIPSSIGSCTRLEQLVMNGN 394
            + +  N+L           T L+++ ++ N
Sbjct: 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 45/241 (18%), Positives = 86/241 (35%), Gaps = 41/241 (17%)

Query: 113 PNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHL 172
            + + L+L  N         + + S           F           +L+ + +SR  +
Sbjct: 28  FSTKNLDLSFNPLR-----HLGSYS-----------FFS-------FPELQVLDLSRCEI 64

Query: 173 GNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIP 232
                  +E   +  + S L  L ++ N     L     +  + L+ L+     L  ++ 
Sbjct: 65  QT-----IE-DGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNLA-SLE 116

Query: 233 SGL-RNLVNLEFLHLGGNQFTG-RIPGSIVDLYKLQRLALEGNKFW---GEIPSSIGNLT 287
           +    +L  L+ L++  N     ++P    +L  L+ L L  NK           +  + 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 288 LL-ITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVI-GLSSLSIYLDLSQ 345
           LL ++L+   N +   I     K   L  L L  N L  ++P  +   L+SL   + L  
Sbjct: 177 LLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQ-KIWLHT 233

Query: 346 N 346
           N
Sbjct: 234 N 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 53/238 (22%), Positives = 89/238 (37%), Gaps = 39/238 (16%)

Query: 18  LRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPE-TLSQLKRMLYLLLGVNKL 76
            + L +  N L      SF +   L+ L  S  + +  I +     L  +  L+L  N +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 77  SGEIPFSI-YNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG-PIPASIS 134
              +       LSSL  +      L  SL +     L  L+ LN+  N      +P   S
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 135 NASNLMRLVIAKNGFSGKVPS--LKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRL 192
           N +NL  L ++ N     +    L++LH++  + +S                        
Sbjct: 147 NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS------------------------ 181

Query: 193 ELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHLGGN 249
             L +S N    + P A   +  RL+ L +  NQL  ++P G    L +L+ + L  N
Sbjct: 182 --LDLSLNPMNFIQPGAFKEI--RLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 42/240 (17%), Positives = 84/240 (35%), Gaps = 37/240 (15%)

Query: 209 AVGNLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHLGGNQFTGRIP-GSIVDLYKLQ 266
            + +L    + L +    L   IPS    NL N+  +++  +    ++   S  +L K+ 
Sbjct: 25  RIPSLPPSTQTLKLIETHL-RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83

Query: 267 RLALEGNKFWGEIPSSI-GNLTLLITLNFEENMLEGSIP--SSLGKCQNLISLNLSNNNL 323
            + +   +    I       L LL  L      L+   P  + +        L +++N  
Sbjct: 84  HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPY 142

Query: 324 SGTIPTEVI-GLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGS 382
             +IP     GL + ++ L L  N                             +     +
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFT-------------------------SVQGYAFN 177

Query: 383 CTRLEQLVMNGNFFQGNIPS-SLSSLR-GIENLDLSRNNLSGRIPKY-LENFPFLQNLNL 439
            T+L+ + +N N +   I   +   +  G   LD+S+ +++  +P   LE+   L   N 
Sbjct: 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 36/186 (19%), Positives = 64/186 (34%), Gaps = 10/186 (5%)

Query: 184 NSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSG-LRNLVNLE 242
           ++  N   +  + +S +     L        +++  + + N +    I    L+ L  L+
Sbjct: 49  HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108

Query: 243 FLHLGGNQFTGRIPG--SIVDLYKLQRLALEGNKFWGEIPS-SIGNLT-LLITLNFEENM 298
           FL +         P    +        L +  N +   IP  +   L    +TL    N 
Sbjct: 109 FLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167

Query: 299 LEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEV-IGLSSLSIYLDLSQNQLNGPLPSN-F 356
              S+         L ++ L+ N     I  +   G+ S    LD+SQ  +   LPS   
Sbjct: 168 FT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSKGL 225

Query: 357 GILKNL 362
             LK L
Sbjct: 226 EHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 37/245 (15%), Positives = 83/245 (33%), Gaps = 40/245 (16%)

Query: 8   VPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRML 67
           +P    S   L++      +L      +F NL ++  +  S +  + Q+           
Sbjct: 26  IPSLPPSTQTLKL---IETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE---------- 72

Query: 68  YLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG 127
                          S YNLS + +I +   +    +  D    LP L+ L +       
Sbjct: 73  -------------SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM 119

Query: 128 -PIPASISNASNLMRLVIAKNGFSGKVPS---LKILHKLEWVGISRNHLGNGKKDDLEFV 183
            P    + +      L I  N +   +P      + ++   + +  N   + +       
Sbjct: 120 FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF--- 176

Query: 184 NSLVNASRLELLQISDNNFGGMLPEAV-GNLSTRLRILIVGNNQLFGNIPSG-LRNLVNL 241
               N ++L+ + ++ N +  ++ +   G + +   +L V    +   +PS  L +L  L
Sbjct: 177 ----NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALPSKGLEHLKEL 231

Query: 242 EFLHL 246
              + 
Sbjct: 232 IARNT 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 50/240 (20%), Positives = 99/240 (41%), Gaps = 23/240 (9%)

Query: 133 ISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRL 192
               +  ++  + K   +    +   L+ ++ +  + + +       ++ +  L N   +
Sbjct: 20  DDAFAETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDI-----KSVQGIQYLPN---V 70

Query: 193 ELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFT 252
             L ++ N    + P  + NL   L  L +  N++     S L++L  L+ L L  N  +
Sbjct: 71  TKLFLNGNKLTDIKP--LANL-KNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGIS 125

Query: 253 GRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQN 312
             I G +V L +L+ L L  NK      + +  LT L TL+ E+N +   I   L     
Sbjct: 126 -DING-LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTK 179

Query: 313 LISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKL 372
           L +L LS N++S      + GL +L + L+L   +      ++   L     +  ++  L
Sbjct: 180 LQNLYLSKNHISDL--RALAGLKNLDV-LELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 21/230 (9%)

Query: 215 TRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNK 274
                  +    +          L +++ +    +     + G I  L  + +L L GNK
Sbjct: 24  AETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNK 79

Query: 275 FWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGL 334
              +I   + NL  L  L  +EN ++  + SSL   + L SL+L +N +     +++ GL
Sbjct: 80  L-TDI-KPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGI-----SDINGL 130

Query: 335 SSLS--IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMN 392
             L     L L  N++     +    L  L  + + +N++S      +   T+L+ L ++
Sbjct: 131 VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLS 186

Query: 393 GNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFN 442
            N    +   +L+ L+ ++ L+L       +   +  N      +  +  
Sbjct: 187 KN--HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 21/212 (9%)

Query: 233 SGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITL 292
                       +L     T  +     +L  + ++    +    +    I  L  +  L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI--KSVQGIQYLPNVTKL 73

Query: 293 NFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLS--IYLDLSQNQLNG 350
               N L   I   L   +NL  L L  N +      ++  L  L     L L  N ++ 
Sbjct: 74  FLNGNKLT-DI-KPLANLKNLGWLFLDENKV-----KDLSSLKDLKKLKSLSLEHNGIS- 125

Query: 351 PLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGI 410
              +    L  L ++ +  NK++    + +   T+L+ L +  N    +I   L+ L  +
Sbjct: 126 -DINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKL 180

Query: 411 ENLDLSRNNLSGRIPKYLENFPFLQNLNLSFN 442
           +NL LS+N++S    + L     L  L L   
Sbjct: 181 QNLYLSKNHISD--LRALAGLKNLDVLELFSQ 210

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 49/290 (16%), Positives = 102/290 (35%), Gaps = 49/290 (16%)

Query: 11  KLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLL 70
              + ++     + + +++  +      L+S++ + A+ +  +  + + +  L  +  L 
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD-IKSV-QGIQYLPNVTKLF 74

Query: 71  LGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIP 130
           L  NKL+      I  L++L                       NL  L L  N+      
Sbjct: 75  LNGNKLT-----DIKPLANL----------------------KNLGWLFLDENKVKDLSS 107

Query: 131 ASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNAS 190
             + +   L  L +  NG S  +  L  L +LE + +  N +      D+  ++ L    
Sbjct: 108 --LKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKI-----TDITVLSRLTK-- 157

Query: 191 RLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQ 250
            L+ L + DN    +    +  L T+L+ L +  N +  +    L  L NL+ L L   +
Sbjct: 158 -LDTLSLEDNQISDI--VPLAGL-TKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQE 211

Query: 251 FTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLE 300
              +      +L     +           P  I +       N + ++ E
Sbjct: 212 CLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 15/141 (10%)

Query: 305 SSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGA 364
            S       I  NL   +++  +      L+S+   +  + + +          L N+  
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQN--ELNSID-QIIANNSDIKS--VQGIQYLPNVTK 72

Query: 365 IDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIP--SSLSSLRGIENLDLSRNNLSG 422
           + ++ NKL+  I   + +   L  L ++ N     +   SSL  L+ +++L L  N +S 
Sbjct: 73  LFLNGNKLT-DI-KPLANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNGIS- 125

Query: 423 RIPKYLENFPFLQNLNLSFNH 443
            I   L + P L++L L  N 
Sbjct: 126 DING-LVHLPQLESLYLGNNK 145

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.5 bits (159), Expect = 2e-11
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 12/150 (8%)

Query: 230 NIPSGLRNLVNLEFLHLGG-----NQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIG 284
                   L  ++ +         ++F        ++   ++ L L        +   + 
Sbjct: 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLE 460

Query: 285 NLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLS 344
            L L+  L+   N L  ++P +L   + L  L  S+N L   +   V  L  L   L L 
Sbjct: 461 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQE-LLLC 516

Query: 345 QNQLNG-PLPSNFGILKNLGAIDISENKLS 373
            N+L              L  +++  N L 
Sbjct: 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.6 bits (154), Expect = 7e-11
 Identities = 52/366 (14%), Positives = 118/366 (32%), Gaps = 37/366 (10%)

Query: 85  YNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVI 144
            + S+  Y    + + +                L++C ++     P ++ +    + L++
Sbjct: 224 NDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSR-----PLTVGSRMGTLLLMV 278

Query: 145 AKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGG 204
            +   S +  +    ++   V +      +      +    ++        +        
Sbjct: 279 DEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRP 338

Query: 205 MLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYK 264
                      +L    +   +    + S L +   L+ L          I   I+ +  
Sbjct: 339 ECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTI---ILLMRA 394

Query: 265 LQRLALEGNKFWGEIPSSIGNLTLLITLN-----FEENMLEGSIPSSLGKCQNLISLNLS 319
           L  L  E      E       L  +  +         +           +  ++  L+L+
Sbjct: 395 LDPLLYEK-----ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA 449

Query: 320 NNNLSGTIPTEVIGLSSLSI--YLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIP 377
           + +L     T +  L  L +  +LDLS N+L   LP     L+ L  +  S+N L   + 
Sbjct: 450 HKDL-----TVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVD 502

Query: 378 SSIGSCTRLEQLVMNGNFFQGNIPS--SLSSLRGIENLDLSRNNLSGRIPKYLEN----F 431
             + +  RL++L++  N  Q    +   L S   +  L+L  N+L  +     E      
Sbjct: 503 G-VANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEML 559

Query: 432 PFLQNL 437
           P + ++
Sbjct: 560 PSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.2 bits (127), Expect = 1e-07
 Identities = 33/190 (17%), Positives = 65/190 (34%), Gaps = 10/190 (5%)

Query: 256 PGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLIS 315
                   +L R  L   K    + S + +   L  L  E      +I   +     L+ 
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400

Query: 316 LNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQ 375
              +    S      V  + +  +    S+  L   +         +  + ++   L+  
Sbjct: 401 EKETLQYFST--LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV--LHLAHKDLT-- 454

Query: 376 IPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQ 435
           +   +     +  L ++ N  +  +P +L++LR +E L  S N L   +   + N P LQ
Sbjct: 455 VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQ 511

Query: 436 NLNLSFNHFE 445
            L L  N  +
Sbjct: 512 ELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.5 bits (107), Expect = 3e-05
 Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 27/115 (23%)

Query: 12  LGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLL 71
           L  L  +  L +  N L   +P +   L  LE L AS N     +   ++ L R+  LLL
Sbjct: 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLL 515

Query: 72  GVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFT 126
             N+L           +++  +                 + P L +LNL  N   
Sbjct: 516 CNNRLQ--------QSAAIQPL----------------VSCPRLVLLNLQGNSLC 546

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 43/206 (20%), Positives = 76/206 (36%), Gaps = 18/206 (8%)

Query: 233 SGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITL 292
                L N    +LG    T  +     +L  +Q    + +    +  + +   T L  L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNI--QSLAGMQFFTNLKEL 68

Query: 293 NFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSI-YLDLSQNQLNGP 351
           +   N +   + S L     L  L+++ N L       + G+ S  +  L L  N+L   
Sbjct: 69  HLSHNQIS-DL-SPLKDLTKLEELSVNRNRL-----KNLNGIPSACLSRLFLDNNELRD- 120

Query: 352 LPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIE 411
              +   LKNL  + I  NKL       +G  ++LE L ++GN  +      L+ L+ + 
Sbjct: 121 -TDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGN--EITNTGGLTRLKKVN 175

Query: 412 NLDLSRNNLSGRIPKYLENFPFLQNL 437
            +DL+         KY         +
Sbjct: 176 WIDLTGQKCVNEPVKYQPELYITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 43/251 (17%), Positives = 79/251 (31%), Gaps = 45/251 (17%)

Query: 112 LPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNH 171
           L N    NL +   T  +       S +       +     +  ++    L+ + +S N 
Sbjct: 18  LANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQ 74

Query: 172 LGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNI 231
           +      DL  +  L     LE L ++ N     L    G  S  L  L + NN+L    
Sbjct: 75  I-----SDLSPLKDLTK---LEELSVNRNR----LKNLNGIPSACLSRLFLDNNEL--RD 120

Query: 232 PSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLIT 291
              L +L NLE L +  N+        +  +                    +G L+ L  
Sbjct: 121 TDSLIHLKNLEILSIRNNK--------LKSI------------------VMLGFLSKLEV 154

Query: 292 LNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGP 351
           L+   N +  +    L + + +  ++L+              L   +   D     ++  
Sbjct: 155 LDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212

Query: 352 LPSNFGILKNL 362
             SN G   + 
Sbjct: 213 YISNGGSYVDG 223

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 40/183 (21%), Positives = 66/183 (36%), Gaps = 29/183 (15%)

Query: 265 LQRLALEGNKFWGEIPSSI--GNLTLLITLNFEENMLEGSIPS-SLGKCQNLISLNLSNN 321
              L L  N     + +      LT L +L    N L   I S +     NL  L+LS+N
Sbjct: 41  TALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98

Query: 322 NLSGTIPTEV-IGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSI 380
           +L  T+   +   L +L   L L  N +     + F  +  L  + +S+N++S + P  +
Sbjct: 99  HLH-TLDEFLFSDLQALE-VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL 155

Query: 381 GSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLS 440
                           +       + L  +  LDLS N L       L+  P      L 
Sbjct: 156 ---------------IKD-----GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

Query: 441 FNH 443
            ++
Sbjct: 196 LHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 38/152 (25%), Positives = 61/152 (40%), Gaps = 15/152 (9%)

Query: 315 SLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSN--FGILKNLGAIDISENKL 372
            L+ S   L   +P     L S +  LDLS N L+  L +      L NL ++ +S N L
Sbjct: 22  ILSCSKQQLP-NVPQ---SLPSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHL 76

Query: 373 SGQIPSSI-GSCTRLEQLVMNGNFFQGNIPS-SLSSLRGIENLDLSRNNLSGRIPKY-LE 429
           +  I S        L  L ++ N     +     S L+ +E L L  N++   + +   E
Sbjct: 77  N-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFE 133

Query: 430 NFPFLQNLNLSFNHFEGEVPIKGVFSNSSAIS 461
           +   LQ L LS N      P   +  + + + 
Sbjct: 134 DMAQLQKLYLSQNQIS-RFP-VELIKDGNKLP 163

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 6/134 (4%)

Query: 15  LSKLRILAMHRNNLSGEIPS-SFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGV 73
           L+ L  L +  N+L+  I S +F  + +L  L  S+N          S L+ +  LLL  
Sbjct: 63  LTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121

Query: 74  NKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDL---GFTLPNLEVLNLCRNQFTGPIP 130
           N +      +  +++ L  + +  NQ+    P +L   G  LP L +L+L  N+      
Sbjct: 122 NHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180

Query: 131 ASISNASNLMRLVI 144
             +      ++  +
Sbjct: 181 TDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 9e-07
 Identities = 41/239 (17%), Positives = 80/239 (33%), Gaps = 33/239 (13%)

Query: 18  LRILAMHRNNLSGEIPS--SFGNLSSLEALSASANQFVGQIPE-TLSQLKRMLYLLLGVN 74
             +L +  NNLS  + +  +   L++L +L  S N  +  I       +  + YL L  N
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN 98

Query: 75  KLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASIS 134
            L     F   +L +L  + +  N +   +  +    +  L+ L L +NQ +        
Sbjct: 99  HLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-------- 149

Query: 135 NASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLEL 194
                                   L KL  + +S N L      DL+ + +         
Sbjct: 150 --------RFPVELIKD----GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW----VKNG 193

Query: 195 LQISDNNFG---GMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQ 250
           L + +N       +          +L  ++     L+      L N+ +L+F +    +
Sbjct: 194 LYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYK 252

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 18/177 (10%)

Query: 129 IPASISNASNLMRLVIAKNGFSGKVP--SLKILHKLEWVGISRNHLGNGKKDDLEFVNSL 186
           +P S+   S    L ++ N  S      +   L  L  + +S NHL       +    + 
Sbjct: 33  VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-----IS-SEAF 84

Query: 187 VNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLH 245
           V    L  L +S N+   +      +L   L +L++ NN +   +      ++  L+ L+
Sbjct: 85  VPVPNLRYLDLSSNHLHTLDEFLFSDL-QALEVLLLYNNHI-VVVDRNAFEDMAQLQKLY 142

Query: 246 LGGNQFTGRIPGSIVD---LYKLQRLALEGNKFWGEIPSSIGNLTLL--ITLNFEEN 297
           L  NQ +      I D   L KL  L L  NK      + +  L       L    N
Sbjct: 143 LSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 6/116 (5%)

Query: 9   PGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLY 68
                 +  LR L +  N+L       F +L +LE L    N  V         + ++  
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140

Query: 69  LLLGVNKLSGEIPFSIY----NLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNL 120
           L L  N++S   P  +      L  L  + +  N+L+  LP      LP      L
Sbjct: 141 LYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGL 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 52/215 (24%), Positives = 82/215 (38%), Gaps = 33/215 (15%)

Query: 231 IPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLI 290
           IPS +    + + L L  N+ +     +   L KL+ L L  NK           L    
Sbjct: 31  IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-----------LQ--- 74

Query: 291 TLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVI-GLSSLSIYLDLSQNQLN 349
                   L   I   L    NL +L +++N L   +P  V   L +L+  L L +NQL 
Sbjct: 75  -------TLPAGIFKELK---NLETLWVTDNKLQ-ALPIGVFDQLVNLA-ELRLDRNQLK 122

Query: 350 GPLPSN-FGILKNLGAIDISENKLSGQIPSSI-GSCTRLEQLVMNGNFFQGNIPSSLSSL 407
             LP   F  L  L  + +  N+L   +P  +    T L++L +  N  +     +   L
Sbjct: 123 S-LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180

Query: 408 RGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFN 442
             ++ L L  N L        ++   L+ L L  N
Sbjct: 181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 58/222 (26%), Positives = 84/222 (37%), Gaps = 45/222 (20%)

Query: 80  IPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNL 139
           IP     L  L       N+L  SLPS     L  L +L L  N+    +PA I      
Sbjct: 35  IPADTKKLD-LQS-----NKLS-SLPSKAFHRLTKLRLLYLNDNKLQT-LPAGI------ 80

Query: 140 MRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLG---NGKKDDLEFVNSLVNASRLELLQ 196
                    F         L  LE + ++ N L     G  D L           L  L+
Sbjct: 81  ---------FKE-------LKNLETLWVTDNKLQALPIGVFDQL---------VNLAELR 115

Query: 197 ISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGL-RNLVNLEFLHLGGNQFTGRI 255
           +  N     LP  V +  T+L  L +G N+L  ++P G+   L +L+ L L  NQ     
Sbjct: 116 LDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVP 173

Query: 256 PGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEEN 297
            G+   L +L+ L L+ N+       +  +L  L  L  +EN
Sbjct: 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 58/236 (24%), Positives = 88/236 (37%), Gaps = 59/236 (25%)

Query: 40  SSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYN-LSSLNYICVPVN 98
           +  + L   +N+      +   +L ++  L L  NKL   +P  I+  L +L  + V  N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 99  QLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKI 158
           +LQ +LP  +   L NL  L L RNQ    +P  +               F         
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRV---------------FDS------- 131

Query: 159 LHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLR 218
           L KL ++ +  N L +                               LP+ V +  T L+
Sbjct: 132 LTKLTYLSLGYNELQS-------------------------------LPKGVFDKLTSLK 160

Query: 219 ILIVGNNQLFGNIPSGL-RNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGN 273
            L + NNQL   +P G    L  L+ L L  NQ      G+   L KL+ L L+ N
Sbjct: 161 ELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 5/141 (3%)

Query: 9   PGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLY 68
                 L+KLR+L ++ N L       F  L +LE L  + N+          QL  +  
Sbjct: 54  SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113

Query: 69  LLLGVNKLSGEIPFSIY-NLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG 127
           L L  N+L   +P  ++ +L+ L Y+ +  N+LQ SLP  +   L +L+ L L  NQ   
Sbjct: 114 LRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKR 171

Query: 128 PIPASI-SNASNLMRLVIAKN 147
            +P       + L  L +  N
Sbjct: 172 -VPEGAFDKLTELKTLKLDNN 191

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 60/237 (25%), Positives = 85/237 (35%), Gaps = 65/237 (27%)

Query: 18  LRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLS 77
            + L +  N LS     +F  L+ L                          L L  NKL 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLR------------------------LLYLNDNKLQ 74

Query: 78  GEIPFSIYN-LSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNA 136
             +P  I+  L +L  + V  N+LQ +LP  +   L NL  L L RNQ    +P  +   
Sbjct: 75  -TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRV--- 128

Query: 137 SNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLE---FVNSLVNASRLE 193
                       F         L KL ++ +  N L       L    F + L +   L 
Sbjct: 129 ------------FDS-------LTKLTYLSLGYNEL-----QSLPKGVF-DKLTSLKELR 163

Query: 194 LLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGL-RNLVNLEFLHLGGN 249
           L     NN    +PE   +  T L+ L + NNQL   +P G   +L  L+ L L  N
Sbjct: 164 L----YNNQLKRVPEGAFDKLTELKTLKLDNNQL-KRVPEGAFDSLEKLKMLQLQEN 215

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 68/463 (14%), Positives = 153/463 (33%), Gaps = 78/463 (16%)

Query: 40  SSLEALSASANQFVGQ-IPETLSQLKRMLYLLLGVNKLSGE----IPFSIYNLSSLNYIC 94
             +++L     +       E L  L++   + L    L+      I  ++    +L  + 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 95  VPVNQLQGSLPSDLGFTL----PNLEVLNLCRNQFT----GPIPASISNASNLMRLVIAK 146
           +  N+L       +   L      ++ L+L     T    G + +++     L  L ++ 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 147 NGFSGKVPSLKILH--------KLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQIS 198
           N        L++L         +LE + +    L           + L      + L +S
Sbjct: 123 NLLGDA--GLQLLCEGLLDPQCRLEKLQLEYCSLSA--ASCEPLASVLRAKPDFKELTVS 178

Query: 199 DNNFGG----MLPEAVGNLSTRLRILIVGNNQL----FGNIPSGLRNLVNLEFLHLGGNQ 250
           +N+       +L + + +   +L  L + +  +      ++   + +  +L  L LG N+
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 251 FTGR-----IPGSIVDLYKLQRLALEGNKF----WGEIPSSIGNLTLLITLNFEENMLEG 301
                     PG +    +L+ L +          G++   +     L  L+   N L  
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298

Query: 302 SIPSSLGK-----CQNLISLNLSNNNLS---GTIPTEVIGLSSLSIYLDLSQNQLNGPLP 353
                L +        L SL + + + +    +  + V+  +   + L +S N+L     
Sbjct: 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL----- 353

Query: 354 SNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ----GNIPSSLSSLRG 409
                 ++ G  ++ +              + L  L +           ++ ++L +   
Sbjct: 354 ------EDAGVRELCQGLGQ--------PGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399

Query: 410 IENLDLSRNNLSGRIPKYL-----ENFPFLQNLNLSFNHFEGE 447
           +  LDLS N L       L     +    L+ L L   ++  E
Sbjct: 400 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 61/369 (16%), Positives = 101/369 (27%), Gaps = 65/369 (17%)

Query: 12  LGSLSKLRILAMHRNNLSGEIPSSFGNL-----SSLEALSASANQF----VGQIPETLSQ 62
           L     L  L +  N L                  ++ LS           G +  TL  
Sbjct: 52  LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT 111

Query: 63  LKRMLYLLLGVNKLSGE-----IPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTL---PN 114
           L  +  L L  N L            +     L  + +    L  +    L   L   P+
Sbjct: 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD 171

Query: 115 LEVLNLCRNQFTGP-----IPASISNASNLMRLVIAKNGFSGK-----VPSLKILHKLEW 164
            + L +  N                +   L  L +   G +          +     L  
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231

Query: 165 VGISRNHLGNGKKDDLEFVNSLVNA-----SRLELLQISDNNFGGMLPEAVGNL---STR 216
           + +  N LG+        +  L        SRL  L I +          +  +      
Sbjct: 232 LALGSNKLGD------VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285

Query: 217 LRILIVGNNQLFGNIPSGLRNLV--------NLEFLHLGGNQFTGRIPGSIVDLYK---- 264
           L+ L +  N+L      G R L          LE L +    FT         +      
Sbjct: 286 LKELSLAGNELG---DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342

Query: 265 LQRLALEGNKFWGEIPSSIG-----NLTLLITLNFEENML--EG--SIPSSLGKCQNLIS 315
           L  L +  N+        +        ++L  L   +  +      S+ ++L    +L  
Sbjct: 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402

Query: 316 LNLSNNNLS 324
           L+LSNN L 
Sbjct: 403 LDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 47/312 (15%), Positives = 92/312 (29%), Gaps = 69/312 (22%)

Query: 192 LELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQL----FGNIPSGLRNLVNLEFLHLG 247
           ++ L I            +  L  + +++ + +  L      +I S LR    L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 248 GNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLE----GSI 303
            N+        ++   +     ++                    L+ +   L     G +
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQ-------------------KLSLQNCCLTGAGCGVL 105

Query: 304 PSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLG 363
            S+L     L  L+LS+N L         GL  L   L L                  L 
Sbjct: 106 SSTLRTLPTLQELHLSDNLLGDA------GLQLLCEGL-LDPQ-------------CRLE 145

Query: 364 AIDISENKLSGQ----IPSSIGSCTRLEQLVMNGNFFQG----NIPSSLSSLR-GIENLD 414
            + +    LS      + S + +    ++L ++ N         +   L      +E L 
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205

Query: 415 LSRNNLSGR----IPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCG 470
           L    ++      +   + +   L+ L L  N         G+      + +  +  L  
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV----GMAELCPGL-LHPSSRL-- 258

Query: 471 GISELHLSTCSI 482
               L +  C I
Sbjct: 259 --RTLWIWECGI 268

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 74/396 (18%), Positives = 131/396 (33%), Gaps = 88/396 (22%)

Query: 115 LEVLNLCRNQFTG----PIPASISNASNLMRLVIAKNGFSGK-----VPSLKILHKLEWV 165
           +E  +L  +  T      + A +    ++  +V++ N    +       ++     LE  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 166 GISRNHLGNGKKDDLE----FVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILI 221
             S    G  K +  E     + +L+   +L  +++SDN FG   P A   L        
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG---PTAQEPLI------- 115

Query: 222 VGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPS 281
                        L     LE L+L  N      P +   + +    AL+       +  
Sbjct: 116 -----------DFLSKHTPLEHLYLHNNGLG---PQAGAKIAR----ALQEL----AVNK 153

Query: 282 SIGNLTLLITLNFEENMLEG----SIPSSLGKCQNLISLNLSNNNLS--GTIPTEVIGLS 335
              N   L ++    N LE         +    + L ++ +  N +   G     + GL+
Sbjct: 154 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213

Query: 336 SLS--IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNG 393
                  LDL  N              +LG+  ++          ++ S   L +L +N 
Sbjct: 214 YCQELKVLDLQDNTFT-----------HLGSSALAI---------ALKSWPNLRELGLND 253

Query: 394 NFFQGN----IPSSLSSL--RGIENLDLSRNNLSGRIPKYL-----ENFPFLQNLNLSFN 442
                     +  + S L   G++ L L  N +     + L     E  P L  L L+ N
Sbjct: 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313

Query: 443 HF--EGEV--PIKGVFSNSSAISIDGNDNLCGGISE 474
            F  E +V   I+ VFS      +D  D++     E
Sbjct: 314 RFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDE 349

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 49/291 (16%), Positives = 86/291 (29%), Gaps = 63/291 (21%)

Query: 231 IPSGLRNLVNLEFLHLGGNQFTGR----IPGSIVDLYKLQRLALEGNKFWGEIPSSIGNL 286
           + + L    +++ + L GN         +  +I     L+                 G +
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI--------FTGRV 75

Query: 287 TLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGL-------SSLSI 339
              I            +  +L KC  L ++ LS+N      PT    L       + L  
Sbjct: 76  KDEIPEALR------LLLQALLKCPKLHTVRLSDNAFG---PTAQEPLIDFLSKHTPLE- 125

Query: 340 YLDLSQNQL-------------NGPLPSNFGILKNLGAIDISENKLSGQ----IPSSIGS 382
           +L L  N L                +         L +I    N+L          +  S
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 383 CTRLEQLVMNGNFF-----QGNIPSSLSSLRGIENLDLSRNNLSGR----IPKYLENFPF 433
              L  + M  N       +  +   L+  + ++ LDL  N  +      +   L+++P 
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245

Query: 434 LQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTCSIKE 484
           L+ L L+           G  +   A S   N  L      L L    I+ 
Sbjct: 246 LRELGLNDCLLSAR----GAAAVVDAFSKLENIGL----QTLRLQYNEIEL 288

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 45/247 (18%), Positives = 80/247 (32%), Gaps = 55/247 (22%)

Query: 111 TLPNLEVLNLCRNQFTG----PIPASISNASNLMRLVIAKNGFS--------------GK 152
             P L  + L  N F      P+   +S  + L  L +  NG                  
Sbjct: 92  KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 151

Query: 153 VPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFG-----GMLP 207
               K    L  +   RN L NG   +     +  +   L  +++  N         +L 
Sbjct: 152 NKKAKNAPPLRSIICGRNRLENGSMKEW--AKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 208 EAVGNLSTRLRILIVGNNQLFGN-----IPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDL 262
           E +      L++L + +N  F +     +   L++  NL  L L     +          
Sbjct: 210 EGLAYCQE-LKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSA--------- 258

Query: 263 YKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEG----SIPSSLG-KCQNLISLN 317
                    G     +  S + N+ L  TL  + N +E     ++ + +  K  +L+ L 
Sbjct: 259 --------RGAAAVVDAFSKLENIGLQ-TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309

Query: 318 LSNNNLS 324
           L+ N  S
Sbjct: 310 LNGNRFS 316

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 12/135 (8%)

Query: 193 ELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHLGGNQF 251
             L++++N F  +    +     +LR +   NN++  +I  G       +  + L  N+ 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNRL 93

Query: 252 TGRIPGSIVDLYKLQRLALEGNKFWGEIPSSI-GNLTLLITLNFEENMLEGSIP----SS 306
                     L  L+ L L  N+    + +     L+ +  L+  +N +  ++      +
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDT 151

Query: 307 LGKCQNLISLNLSNN 321
           L     L +LNL  N
Sbjct: 152 LHS---LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 6/132 (4%)

Query: 316 LNLSNNNLSGTIPTEV-IGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSG 374
           L L+NN  +    T +   L  L   ++ S N++       F     +  I ++ N+L  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLR-KINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 375 QIPSSI-GSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPK-YLENFP 432
            +   +      L+ L++  N        S   L  +  L L  N ++  +     +   
Sbjct: 96  -VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLH 153

Query: 433 FLQNLNLSFNHF 444
            L  LNL  N F
Sbjct: 154 SLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 4/110 (3%)

Query: 19  RILAMHRNNLSG-EIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLS 77
             L ++ N  +  E    F  L  L  ++ S N+              +  +LL  N+L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 78  GEIPFSI-YNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFT 126
             +   +   L SL  + +  N++   + +D    L ++ +L+L  NQ T
Sbjct: 95  -NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 1/116 (0%)

Query: 10  GKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYL 69
           G    L +LR +    N ++     +F   S +  +  ++N+      +    L+ +  L
Sbjct: 51  GIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110

Query: 70  LLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQF 125
           +L  N+++     S   LSS+  + +  NQ+  ++      TL +L  LNL  N F
Sbjct: 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 46/154 (29%), Positives = 65/154 (42%), Gaps = 7/154 (4%)

Query: 220 LIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEI 279
           L + +  L     +  R L  L +L+L  NQ      G   DL +L  L L  N+    +
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASL 98

Query: 280 PSSI-GNLTLLITLNFEENMLEGSIPSSL-GKCQNLISLNLSNNNLSGTIPTEVI-GLSS 336
           P  +  +LT L  L    N L+ S+PS +  +   L  L L+ N L  +IP      L++
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTN 156

Query: 337 LSIYLDLSQNQLNGPLPSNFGILKNLGAIDISEN 370
           L   L LS NQL       F  L  L  I +  N
Sbjct: 157 LQ-TLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 11/168 (6%)

Query: 231 IPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSI-GNLTLL 289
           +PSG+    + E L L           +   L KL  L L+ N+    + + +  +LT L
Sbjct: 29  VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTEL 85

Query: 290 ITLNFEENMLEGSIPSSL-GKCQNLISLNLSNNNLSGTIPTEVI-GLSSLSIYLDLSQNQ 347
            TL    N L  S+P  +      L  L L  N L  ++P+ V   L+ L   L L+ NQ
Sbjct: 86  GTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLK-ELRLNTNQ 142

Query: 348 LNGPLPSN-FGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGN 394
           L   +P+  F  L NL  + +S N+L      +     +L+ + + GN
Sbjct: 143 LQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 37/116 (31%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 184 NSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGL-RNLVNLE 242
           + L     L L     NN    LP  V +  T+L  L +G NQL  ++PSG+   L  L+
Sbjct: 80  DDLTELGTLGL----ANNQLASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLK 134

Query: 243 FLHLGGNQFTGRIPGSIVD-LYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEEN 297
            L L  NQ    IP    D L  LQ L+L  N+       +   L  L T+    N
Sbjct: 135 ELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 9/169 (5%)

Query: 279 IPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEV-IGLSSL 337
           +PS I   T  + L      L     ++      L  LNL  N L  T+   V   L+ L
Sbjct: 29  VPSGIPADTEKLDLQS--TGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTEL 85

Query: 338 SIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSI-GSCTRLEQLVMNGNFF 396
              L L+ NQL       F  L  L  + +  N+L   +PS +    T+L++L +N N  
Sbjct: 86  G-TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQL 143

Query: 397 QGNIPSSL-SSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHF 444
           Q +IP+     L  ++ L LS N L        +    LQ + L  N F
Sbjct: 144 Q-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 3/107 (2%)

Query: 21  LAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEI 80
           L +    L+    ++F  L+ L  L+   NQ           L  +  L L  N+L+  +
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SL 98

Query: 81  PFSIY-NLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFT 126
           P  ++ +L+ L+ + +  NQL+ SLPS +   L  L+ L L  NQ  
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ 144

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 11/131 (8%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQF----VGQI 56
              L          L+KL  L +  N L       F +L+ L  L  + NQ     +G +
Sbjct: 44  STGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG-V 102

Query: 57  PETLSQLKRMLYLLLGVNKLSGEIPFSIY-NLSSLNYICVPVNQLQGSLPSDLGFTLPNL 115
            + L+QL     L LG N+L   +P  ++  L+ L  + +  NQLQ S+P+     L NL
Sbjct: 103 FDHLTQLD---KLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNL 157

Query: 116 EVLNLCRNQFT 126
           + L+L  NQ  
Sbjct: 158 QTLSLSTNQLQ 168

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 5/132 (3%)

Query: 316 LNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSN-FGILKNLGAIDISENKLSG 374
           + L  N +    P        L   +DLS NQ++  L  + F  L++L ++ +  NK++ 
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLR-RIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 375 QIPSSI-GSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPF 433
           ++P S+      L+ L++N N        +   L  +  L L  N L             
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153

Query: 434 LQNLNLSFNHFE 445
           +Q ++L+ N F 
Sbjct: 154 IQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 37/142 (26%), Positives = 55/142 (38%), Gaps = 9/142 (6%)

Query: 212 NLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLAL 270
           NL   +  + +  N +   IP G       L  + L  NQ +   P +   L  L  L L
Sbjct: 29  NLPETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87

Query: 271 EGNKFWGEIPSSI-GNLTLLITLNFEENMLEGSIPS-SLGKCQNLISLNLSNNNLSGTIP 328
            GNK   E+P S+   L  L  L    N +   +   +     NL  L+L +N L  TI 
Sbjct: 88  YGNKI-TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIA 144

Query: 329 TEVI-GLSSLSIYLDLSQNQLN 349
                 L ++   + L+QN   
Sbjct: 145 KGTFSPLRAIQ-TMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 3/130 (2%)

Query: 19  RILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSG 78
             + + +N +    P +F     L  +  S NQ     P+    L+ +  L+L  NK++ 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 79  EIPFSI-YNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNAS 137
           E+P S+   L SL  + +  N++   L  D    L NL +L+L  N+       + S   
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 138 NLMRLVIAKN 147
            +  + +A+N
Sbjct: 153 AIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 5/131 (3%)

Query: 266 QRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPS-SLGKCQNLISLNLSNNNLS 324
             + LE N      P +      L  ++   N +   +   +    ++L SL L  N ++
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 325 GTIPTEVI-GLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSC 383
             +P  +  GL SL   L L+ N++N      F  L NL  + + +NKL      +    
Sbjct: 94  -ELPKSLFEGLFSLQ-LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 384 TRLEQLVMNGN 394
             ++ + +  N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 9   PGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLY 68
           PG      KLR + +  N +S   P +F  L SL +L    N+           L  +  
Sbjct: 49  PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108

Query: 69  LLLGVNKLSGEIPFSIY-NLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQF 125
           LLL  NK++  +    + +L +LN + +  N+LQ ++       L  ++ ++L +N F
Sbjct: 109 LLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 3/109 (2%)

Query: 190 SRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGL-RNLVNLEFLHLGG 248
            +L  + +S+N     L          L  L++  N++   +P  L   L +L+ L L  
Sbjct: 56  KKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNA 113

Query: 249 NQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEEN 297
           N+       +  DL+ L  L+L  NK       +   L  + T++  +N
Sbjct: 114 NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 34/184 (18%), Positives = 55/184 (29%), Gaps = 57/184 (30%)

Query: 69  LLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGP 128
           + L  N +    P +      L  I +  NQ+   L  D    L +L  L L  N+ T  
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITE- 94

Query: 129 IPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVN 188
           +P S+               F G       L  L+ + ++ N +                
Sbjct: 95  LPKSL---------------FEG-------LFSLQLLLLNANKINC-------------- 118

Query: 189 ASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHLG 247
                            L          L +L + +N+L   I  G    L  ++ +HL 
Sbjct: 119 -----------------LRVDAFQDLHNLNLLSLYDNKL-QTIAKGTFSPLRAIQTMHLA 160

Query: 248 GNQF 251
            N F
Sbjct: 161 QNPF 164

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 302 SIPSSLGKCQNLISLNLSNNNLSGTIPTEVI-GLSSLSIYLDLSQNQLNGPLPSNFGILK 360
                L   +NL  L + N      +    + GL  L   L + ++ L    P  F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELR-NLTIVKSGLRFVAPDAFHFTP 80

Query: 361 NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ 397
            L  +++S N L   +         L++LV++GN   
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 8e-07
 Identities = 23/127 (18%), Positives = 39/127 (30%), Gaps = 27/127 (21%)

Query: 224 NNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIP-GSIVDLYKLQRLALEGNKFWGEIPSS 282
                 +    L    NL  L++   Q    +    +  L +L+ L +  +         
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-----RF 70

Query: 283 IGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLD 342
           +                    P +      L  LNLS N L  ++  + +   SL   L 
Sbjct: 71  VA-------------------PDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQE-LV 109

Query: 343 LSQNQLN 349
           LS N L+
Sbjct: 110 LSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 1/75 (1%)

Query: 215 TRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGN 273
             L  L + N Q   ++    LR L  L  L +  +      P +     +L RL L  N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 274 KFWGEIPSSIGNLTL 288
                   ++  L+L
Sbjct: 91  ALESLSWKTVQGLSL 105

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 2/95 (2%)

Query: 8   VPGKLGSLSKLRILAMHRNNLSGEIPS-SFGNLSSLEALSASANQFVGQIPETLSQLKRM 66
               L     L  L +        +       L  L  L+   +      P+      R+
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 67  LYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQ 101
             L L  N L   + +      SL  + +  N L 
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 2/93 (2%)

Query: 353 PSNFGILKNLGAIDISENKLSGQIPS-SIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIE 411
             +    +NL  + I   +    +    +     L  L +  +  +   P +      + 
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 412 NLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHF 444
            L+LS N L   +         LQ L LS N  
Sbjct: 84  RLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 3/95 (3%)

Query: 56  IPETLSQLKRMLYLLLGVNKLSGEIP-FSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPN 114
               L   + +  L +   +    +    +  L  L  + +  + L+  +  D     P 
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 115 LEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGF 149
           L  LNL  N     +        +L  LV++ N  
Sbjct: 82  LSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPL 115

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 90/512 (17%), Positives = 149/512 (29%), Gaps = 167/512 (32%)

Query: 43  EALSASANQFVGQIPETLSQLKRMLYLLL-----GVNKLSGEIPFSIYN--LSSLNYICV 95
             LS      +    + +S   R+ + LL      V K   E+    Y   +S +     
Sbjct: 44  SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 96  -P----------VNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVI 144
            P           ++L         F        N+ R Q   P    +  A  L+ L  
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQV---FA-K----YNVSRLQ---PY-LKLRQA--LLELRP 149

Query: 145 AKN-------GFSGK-------VPSLKILHKLE----WVGISRNHLGNGKKDD--LEFVN 184
           AKN       G  GK         S K+  K++    W+     +L N    +  LE + 
Sbjct: 150 AKNVLIDGVLGS-GKTWVALDVCLSYKVQCKMDFKIFWL-----NLKNCNSPETVLEMLQ 203

Query: 185 SLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGN---IPSGLRNLVNL 241
            L+          SD++    +   + ++   LR L+   ++ + N   +   L N+ N 
Sbjct: 204 KLLYQIDPNWTSRSDHSSN--IKLRIHSIQAELRRLLK--SKPYENCLLV---LLNVQNA 256

Query: 242 EFLHLGGNQFTGRIPGSIVDLYKLQ-RLALEGNKFWGEIPSSIGNLTLLITLNFEENMLE 300
           +                  + + L  +                    LL T         
Sbjct: 257 K----------------AWNAFNLSCK-------------------ILLTTRF------- 274

Query: 301 GSIPSSL-GKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGIL 359
             +   L       ISL+  +  L+   P EV  L  L  YLD         LP      
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLT---PDEVKSL--LLKYLDCRPQD----LPRE---- 321

Query: 360 KNLGAIDISENKLSGQIP---SSIGSCTRLEQLVMNGNFFQGN-------IPSSLSSLRG 409
                +  +        P   S I    R + L    N+   N       I SSL+ L  
Sbjct: 322 ----VLTTN--------PRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 410 IEN----LDLS--RNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGV--FSNSSAIS 461
            E       LS    +    IP           L+L +        +  V      S + 
Sbjct: 369 AEYRKMFDRLSVFPPSA--HIP--------TILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 462 IDGNDNLCGGISELHLSTCSIKESKQSRSRSL 493
               ++    I  ++L      E++ +  RS+
Sbjct: 419 KQPKESTI-SIPSIYLELKVKLENEYALHRSI 449

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.9 bits (123), Expect = 3e-07
 Identities = 29/175 (16%), Positives = 57/175 (32%), Gaps = 12/175 (6%)

Query: 90  LNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGF 149
              I     ++      DL   L  + +LN  + + T  +        NL  L I   G 
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGL 205

Query: 150 SGKVP------SLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFG 203
              V        L  L KL       ++  +G  +    + S      L+ L I D    
Sbjct: 206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ 265

Query: 204 GMLPEAVGN--LSTRLRILIVGNNQL----FGNIPSGLRNLVNLEFLHLGGNQFT 252
            ++ E      +  +L  + +    L       +   +  + +L+F+++  N  +
Sbjct: 266 NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.8 bits (102), Expect = 9e-05
 Identities = 32/205 (15%), Positives = 66/205 (32%), Gaps = 40/205 (19%)

Query: 154 PSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNL 213
           P L  +  L  + I          ++L           L+ L+I        + E +   
Sbjct: 166 PVLDAMPLLNNLKIKGT-------NNLSI--GKKPRPNLKSLEIISGGLPDSVVEDILGS 216

Query: 214 S----TRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLA 269
                 +L + +   +  F    +  R L          ++F             L+ L 
Sbjct: 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPL-------FSKDRFP-----------NLKWLG 258

Query: 270 LEGNKFWGEIPSSIGN---LTLLITLNFEENMLEGS----IPSSLGKCQNLISLNLSNNN 322
           +   +    +         L  L T++    +L       +   + K ++L  +N+  N 
Sbjct: 259 IVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318

Query: 323 LSGTIPTEVIGLSSLSIYLDLSQNQ 347
           LS  +  E+    SL + +D+S +Q
Sbjct: 319 LSDEMKKEL--QKSLPMKIDVSDSQ 341

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.0 bits (100), Expect = 2e-04
 Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 14/164 (8%)

Query: 298 MLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSI-YLDLSQNQLNGPLPSNF 356
           + +  +   L     L +L +   N           L SL I    L  + +   L S+ 
Sbjct: 159 IEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDL 218

Query: 357 GILKNLGAIDISENKLSGQIPSSI------GSCTRLEQLVMNGNFFQGNIPSSLSS---L 407
             L+ L      E+       +             L+ L +     Q  +         L
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278

Query: 408 RGIENLDLSRNNLSGR----IPKYLENFPFLQNLNLSFNHFEGE 447
             +E +D+S   L+      +  +++    L+ +N+ +N+   E
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 14/145 (9%)

Query: 231 IPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSI-GNLTLL 289
           +P+G+    N + L+L  NQ T   PG    L  L+ L L  N+  G +P  +  +LT L
Sbjct: 34  VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQL 90

Query: 290 ITLNFEENMLEGSIPS----SLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQ 345
             L+   N L   +PS     L     L  L +  N L+  +P  +  L+ L+ +L L Q
Sbjct: 91  TVLDLGTNQLT-VLPSAVFDRLVH---LKELFMCCNKLT-ELPRGIERLTHLT-HLALDQ 144

Query: 346 NQLNGPLPSNFGILKNLGAIDISEN 370
           NQL       F  L +L    +  N
Sbjct: 145 NQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 6/133 (4%)

Query: 212 NLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE 271
            + T  +IL + +NQ+    P    +L+NL+ L+LG NQ      G    L +L  L L 
Sbjct: 37  GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96

Query: 272 GNKFWGEIPSSI-GNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTE 330
            N+    +PS++   L  L  L    N L   +P  + +  +L  L L  N L  +IP  
Sbjct: 97  TNQL-TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHG 153

Query: 331 VI-GLSSLS-IYL 341
               LSSL+  YL
Sbjct: 154 AFDRLSSLTHAYL 166

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 184 NSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEF 243
           +SL   + L+L      N   +LP AV +    L+ L +  N+L   +P G+  L +L  
Sbjct: 85  DSLTQLTVLDL----GTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTH 139

Query: 244 LHLGGNQFTGRIPGSIVD-LYKLQRLALEGN 273
           L L  NQ    IP    D L  L    L GN
Sbjct: 140 LALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 49/137 (35%), Positives = 68/137 (49%), Gaps = 9/137 (6%)

Query: 215 TRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNK 274
             +R L +G N+L  +I + L+ L NL +L L GNQ      G    L  L+ L L  N+
Sbjct: 63  PNVRYLALGGNKL-HDISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120

Query: 275 FWGEIPSSIGN-LTLLITLNFEENMLEGSIPSSL-GKCQNLISLNLSNNNLSGTIPTEVI 332
               +P  + + LT L  LN   N L+ S+P  +  K  NL  L+LS N L  ++P  V 
Sbjct: 121 L-QSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVF 177

Query: 333 G-LSSLSIYLDLSQNQL 348
             L+ L   L L QNQL
Sbjct: 178 DKLTQLK-DLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 13/166 (7%)

Query: 211 GNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLAL 270
            N    +  +I  N+ +      G++ L N+ +L LGGN+       ++ +L  L  L L
Sbjct: 37  QNELNSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLIL 92

Query: 271 EGNKFWGEIPSSI-GNLTLLITLNFEENMLEGSIPSSL-GKCQNLISLNLSNNNLSGTIP 328
            GN+    +P+ +   LT L  L   EN L+ S+P  +  K  NL  LNL++N L  ++P
Sbjct: 93  TGNQL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLP 149

Query: 329 TEVI-GLSSLSIYLDLSQNQLNGPLPSN-FGILKNLGAIDISENKL 372
             V   L++L+  LDLS NQL   LP   F  L  L  + + +N+L
Sbjct: 150 KGVFDKLTNLT-ELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 45/211 (21%)

Query: 68  YLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG 127
              L    ++  +  +   L+S++ I    + ++          LPN+  L L  N+   
Sbjct: 23  KANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ---YLPNVRYLALGGNKLH- 76

Query: 128 PIPASISNASNLMRLVIAKNGFSGKVPS--LKILHKLEWVGISRNHLGNGKKDDLEFVNS 185
            I A +   +NL  L++  N     +P+     L  L+ + +  N L +           
Sbjct: 77  DISA-LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQS----------- 123

Query: 186 LVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGL-RNLVNLEFL 244
                               LP+ V +  T L  L + +NQL  ++P G+   L NL  L
Sbjct: 124 --------------------LPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTEL 162

Query: 245 HLGGNQFTGRIPGSIVD-LYKLQRLALEGNK 274
            L  NQ    +P  + D L +L+ L L  N+
Sbjct: 163 DLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQ 192

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 27/118 (22%), Positives = 40/118 (33%), Gaps = 11/118 (9%)

Query: 233 SGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPS--SIGNLTLLI 290
           +   N V    L L G +    I      L +   +    N    EI        L  L 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRLK 67

Query: 291 TLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLS--IYLDLSQN 346
           TL    N +            +L  L L+NN+L      ++  L+SL    YL + +N
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 12/129 (9%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIP--ET 59
            EL+ +      +  + R L +    +   I +    L   +A+  S N+    I   + 
Sbjct: 6   AELIEQAAQ-YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE----IRKLDG 59

Query: 60  LSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGF--TLPNLEV 117
              L+R+  LL+  N++          L  L  + +  N L      DL    +L +L  
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL--VELGDLDPLASLKSLTY 117

Query: 118 LNLCRNQFT 126
           L + RN  T
Sbjct: 118 LCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 17/117 (14%), Positives = 38/117 (32%), Gaps = 9/117 (7%)

Query: 281 SSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLS-- 338
           +   N      L+     +   I +         +++ S+N +      ++ G   L   
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI-----RKLDGFPLLRRL 66

Query: 339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSG-QIPSSIGSCTRLEQLVMNGN 394
             L ++ N++          L +L  + ++ N L        + S   L  L +  N
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 9/121 (7%)

Query: 230 NIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLL 289
            + + L  L   + L L  N    +I   +  +  L+ L+L  N    +I +       L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLI-KKIENLDAVADTL 95

Query: 290 ITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLS--IYLDLSQNQ 347
             L    N +  S+ S + K  NL  L +SNN ++     E+  L++L     L L+ N 
Sbjct: 96  EELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITN--WGEIDKLAALDKLEDLLLAGNP 151

Query: 348 L 348
           L
Sbjct: 152 L 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 40/159 (25%)

Query: 289 LITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLS--IYLDLSQN 346
            + L+     +E  + ++L   +    L LS NN+      ++  LS +     L L +N
Sbjct: 27  KVELHGMIPPIEK-MDATLSTLKACKHLALSTNNI-----EKISSLSGMENLRILSLGRN 80

Query: 347 QLN--GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSL 404
            +     L +    L+ L    IS N+++     S+                     S +
Sbjct: 81  LIKKIENLDAVADTLEEL---WISYNQIA-----SL---------------------SGI 111

Query: 405 SSLRGIENLDLSRNNLSG-RIPKYLENFPFLQNLNLSFN 442
             L  +  L +S N ++       L     L++L L+ N
Sbjct: 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 62/435 (14%), Positives = 126/435 (28%), Gaps = 67/435 (15%)

Query: 76  LSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASIS- 134
           L G+  F+ +NL    +       ++    S        LE + L R   T      I+ 
Sbjct: 73  LKGKPHFADFNLVPDGWGGYVYPWIEAMSSS-----YTWLEEIRLKRMVVTDDCLELIAK 127

Query: 135 NASNLMRLVIAK-NGFS--GKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASR 191
           +  N   LV++   GFS  G          L+ + +  + + +     L         + 
Sbjct: 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD--TYTS 185

Query: 192 LELLQISD--NNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGN 249
           L  L IS   +       E +      L+ L +        + + L+    LE L  GG 
Sbjct: 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245

Query: 250 QFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGK 309
                   + V       L+            ++     L  L+   + +   +P+    
Sbjct: 246 T-------AEVRPDVYSGLS-----------VALSGCKELRCLSGFWDAVPAYLPAVYSV 287

Query: 310 CQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISE 369
           C  L +LNLS   +      +++        L +     +  L       K+L  + +  
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347

Query: 370 NKLSGQIPSS----------IGSCTRLEQLVMNGNFFQGN----IPSSLSSLRGIENLDL 415
           ++     P+              C +LE ++             I  +  ++       +
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407

Query: 416 SRNNLSGR--------IPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDN 467
                               +E+   L+ L+LS           G+ ++     I     
Sbjct: 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS-----------GLLTDKVFEYIGTY-- 454

Query: 468 LCGGISELHLSTCSI 482
               +  L ++    
Sbjct: 455 -AKKMEMLSVAFAGD 468

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 9/115 (7%)

Query: 212 NLSTRLRILIVGNNQLFGNIPSGL-RNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLAL 270
           ++      L++ +N+L      GL   L +L  L L  NQ TG  P +      +Q L L
Sbjct: 26  DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85

Query: 271 EGNKFWGEIPSSI-GNLTLLITLNFEENMLEGSIPSSLGKCQNLISL---NLSNN 321
             NK   EI + +   L  L TLN  +N +   +    G  ++L SL   NL++N
Sbjct: 86  GENKI-KEISNKMFLGLHQLKTLNLYDNQIS-CVMP--GSFEHLNSLTSLNLASN 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 212 NLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE 271
            +  +   L +  N L          L +L  L+LGGN+      G    L  L  L L 
Sbjct: 25  GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84

Query: 272 GNKFWGEIPSSI-GNLTLLITLNFEENMLEGSIPSSL-GKCQNLISLNLSNNNLSGTIPT 329
            N+    +P+ +   LT L  L    N L+ S+P  +  K   L  L L  N L  ++P 
Sbjct: 85  TNQL-QSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPD 141

Query: 330 EVI-GLSSLS-IYL 341
            V   L+SL  I+L
Sbjct: 142 GVFDRLTSLQYIWL 155

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 206 LPEAVGNLSTRLRILIVGNNQLFGNIPSGL-RNLVNLEFLHLGGNQFTGRIPGSIVD-LY 263
           LP  V N  T L  L +  NQL  ++P+G+   L  L+ L L  NQ    +P  + D L 
Sbjct: 67  LPNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLT 124

Query: 264 KLQRLALEGNK 274
           +L+ L L  N+
Sbjct: 125 QLKDLRLYQNQ 135

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 4/106 (3%)

Query: 338 SIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ 397
            + LD S++   G L       + L  +      L+  I +++    +L++L ++ N   
Sbjct: 21  ELVLDNSRSN-EGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVS 77

Query: 398 GNIPSSLSSLRGIENLDLSRNNLSG-RIPKYLENFPFLQNLNLSFN 442
           G +         + +L+LS N +      + L+    L++L+L   
Sbjct: 78  GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 13/119 (10%)

Query: 234 GLRNLVNLEFLHLGGNQFT-GRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNL---TLL 289
             R   +++ L L  ++   G++ G   +  +L+ L+           +SI NL     L
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-----TSIANLPKLNKL 66

Query: 290 ITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLS--IYLDLSQN 346
             L   +N + G +     KC NL  LNLS N +     + +  L  L     LDL   
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD--LSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 309 KCQNLISLNLSNN-NLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDI 367
              ++  L L N+ +  G +         L   L      L     +N   L  L  +++
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEF-LSTINVGLTSI--ANLPKLNKLKKLEL 71

Query: 368 SENKLSGQIPSSIGSCTRLEQLVMNGNFFQG-NIPSSLSSLRGIENLDLSRN 418
           S+N++SG +      C  L  L ++GN  +  +    L  L  +++LDL   
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 8/97 (8%)

Query: 301 GSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLS--IYLDLSQNQLNGPLPSNFGI 358
           G I     +  NL  L+L N  L       V  L  L     L+LS+N++ G L      
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGL-----ISVSNLPKLPKLKKLELSENRIFGGLDMLAEK 93

Query: 359 LKNLGAIDISENKLSG-QIPSSIGSCTRLEQLVMNGN 394
           L NL  +++S NKL        +     L+ L +   
Sbjct: 94  LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 4/105 (3%)

Query: 339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQG 398
           + LD  ++   G +        NL  + +    L   + S++    +L++L ++ N   G
Sbjct: 29  LVLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFG 85

Query: 399 NIPSSLSSLRGIENLDLSRNNLSG-RIPKYLENFPFLQNLNLSFN 442
            +      L  + +L+LS N L      + L+    L++L+L   
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 11/127 (8%)

Query: 224 NNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSI 283
           + +L    P+ +R LV    L    +   G+I G   +   L+ L+L          S++
Sbjct: 15  HLELRNRTPAAVRELV----LDNCKSN-DGKIEGLTAEFVNLEFLSLINVGL--ISVSNL 67

Query: 284 GNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLS--IYL 341
             L  L  L   EN + G +     K  NL  LNLS N L     + +  L  L     L
Sbjct: 68  PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--ISTLEPLKKLECLKSL 125

Query: 342 DLSQNQL 348
           DL   ++
Sbjct: 126 DLFNCEV 132

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 206 LPEAVGNLSTRLRILIVGNNQLFGNIPSGL-RNLVNLEFLHLGGNQFTGRIPGSIVD-LY 263
           LP  V +  T+L  L +  NQ+  ++P G+   L  L  L+L  N+    +P  + D L 
Sbjct: 43  LPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLT 100

Query: 264 KLQRLALEGNK 274
           +L+ LAL+ N+
Sbjct: 101 QLKELALDTNQ 111

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 9/114 (7%)

Query: 212 NLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE 271
            +   +  L +  NQ    +P  L N  +L  + L  N+ +     S  ++ +L  L L 
Sbjct: 28  GIPRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86

Query: 272 GNKFWGEIPSSI-GNLTLLITLNFEENMLEGSIPSSLGKCQNLISLN---LSNN 321
            N+    IP      L  L  L+   N +   +P   G   +L +L+   +  N
Sbjct: 87  YNRL-RCIPPRTFDGLKSLRLLSLHGNDIS-VVPE--GAFNDLSALSHLAIGAN 136

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 59/358 (16%), Positives = 105/358 (29%), Gaps = 79/358 (22%)

Query: 186 LVNASRLELLQISDNNFGGM----LPEAVGNLSTRLRILIVGNNQL----FGNIPSGLR- 236
                 +  L +S NN   +    L +A  N    +  L +  N L       +   L  
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 237 NLVNLEFLHLGGNQFTGRIPGSIVDL-----YKLQRLALEGNKFWGEIPSSIGNL----- 286
              N+  L+L GN  + +    +V       + +  L L  N F  +  S          
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 287 TLLITLNFEENMLEGSIPSSLGKC-----QNLISLNLSNNNLSGTIPTEVIGLSSLS--- 338
             + +LN   N L       L +       N+ SLNL  NNL+          + L+   
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA------SKNCAELAKFL 191

Query: 339 -------IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVM 391
                    LDLS N L                 +++    S            +  L +
Sbjct: 192 ASIPASVTSLDLSANLLG-----------LKSYAELAYIFSS--------IPNHVVSLNL 232

Query: 392 NGNFFQG----NIPSSLSSLRGIENLDLSRNNLSG-------RIPKYLENFPFLQNLNLS 440
             N   G    N+     SL+ ++ + L  + +          +     N   +  ++ +
Sbjct: 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292

Query: 441 FNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTCSIKESKQSRSRSLKLIIP 498
                           S+ I       L G      L    +  +++ ++    L IP
Sbjct: 293 GKEIHPS----HSIPISNLIR-----ELSGKADVPSLLNQCLIFAQKHQTNIEDLNIP 341

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	503
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.98
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.74
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.73
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.6
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.58
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.57
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.37
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.37
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.29
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.86
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.6
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.58
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.52
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.39
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.33
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.28
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.54
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.5
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.33
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.67
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	85.49
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	82.74

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.7e-57  Score=480.33  Aligned_cols=464  Identities=34%  Similarity=0.525  Sum_probs=326.6

Q ss_pred             CCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcE
Q 040833           13 GSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNY   92 (503)
Q Consensus        13 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~   92 (503)
                      ..+++|++|++++|.+++..|. |.++++|++|++++|.+.+..|.+|..+++|++|++++|.+.+..|..  .+++|++
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~  273 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY  273 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred             ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCE
Confidence            4555555555555555544444 555555555555555555555555555555555555555555444332  4555555


Q ss_pred             EEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC--ccCCCCCcEEEcccc
Q 040833           93 ICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS--LKILHKLEWVGISRN  170 (503)
Q Consensus        93 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--l~~l~~L~~L~l~~n  170 (503)
                      |++++|.+.+.+|..++..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+.  +..+++|++|++++|
T Consensus       274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n  353 (768)
T 3rgz_A          274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN  353 (768)
T ss_dssp             EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred             EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence            555555554445544443335555555555555545555555555555555555554433332  444455555555544


Q ss_pred             cCCCCCCCCc-------------------cccccccC--CCCCCEEECcCCcccccCchhHhhccccCcEEEeecccccc
Q 040833          171 HLGNGKKDDL-------------------EFVNSLVN--ASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFG  229 (503)
Q Consensus       171 ~l~~~~~~~~-------------------~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  229 (503)
                      .+.......+                   ..+..+..  +++|++|++++|.+.+..|..+..++ +|++|++++|.+.+
T Consensus       354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~  432 (768)
T 3rgz_A          354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSG  432 (768)
T ss_dssp             EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEES
T ss_pred             ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC-CCCEEECcCCcccC
Confidence            4331100000                   11222222  56677777777777777777777765 78888888887777


Q ss_pred             ccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccC
Q 040833          230 NIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGK  309 (503)
Q Consensus       230 ~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  309 (503)
                      ..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|.++..
T Consensus       433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~  512 (768)
T 3rgz_A          433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR  512 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence            77777777888888888888877777777777888888888888887777777888888888888888887777777788


Q ss_pred             CCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcc----------------------------------
Q 040833          310 CQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSN----------------------------------  355 (503)
Q Consensus       310 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~----------------------------------  355 (503)
                      +++|++|++++|++.+..|..+..++++ +.|++++|.+.+.+|..                                  
T Consensus       513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  591 (768)
T 3rgz_A          513 LENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG  591 (768)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSE
T ss_pred             CCCCCEEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccc
Confidence            8888888888888877788888888777 78888888776554433                                  


Q ss_pred             ------------------------------------hhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCccc
Q 040833          356 ------------------------------------FGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGN  399 (503)
Q Consensus       356 ------------------------------------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~  399 (503)
                                                          +..++.|+.|++++|.+++.+|..+.++++|+.|+|++|.+++.
T Consensus       592 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~  671 (768)
T 3rgz_A          592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS  671 (768)
T ss_dssp             EEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred             cccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCC
Confidence                                                33457899999999999999999999999999999999999999


Q ss_pred             CchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCcccCCCCCCCC
Q 040833          400 IPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLST  479 (503)
Q Consensus       400 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~~~~~~ls~  479 (503)
                      +|..++.+++|+.|||++|++++.+|..+..+++|++|++++|+++|.+|..+.|..+....+.|||.+||.+    ++.
T Consensus       672 ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~----l~~  747 (768)
T 3rgz_A          672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP----LPR  747 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT----SCC
T ss_pred             CChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC----CcC
Confidence            9999999999999999999999999999999999999999999999999998889999999999999999865    346


Q ss_pred             CCCCCc
Q 040833          480 CSIKES  485 (503)
Q Consensus       480 ~~~~~~  485 (503)
                      |.-...
T Consensus       748 C~~~~~  753 (768)
T 3rgz_A          748 CDPSNA  753 (768)
T ss_dssp             CCSCC-
T ss_pred             CCCCcc
Confidence            754433

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.5e-55  Score=462.70  Aligned_cols=452  Identities=34%  Similarity=0.485  Sum_probs=307.8

Q ss_pred             CCccccCCCcc---cCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceee
Q 040833            1 FNELVGKVPGK---LGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLS   77 (503)
Q Consensus         1 ~~~~~~~~~~~---~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~   77 (503)
                      .|.+++..+..   ++++++|++|++++|.+++..+  +..+++|++|++++|.+.+..|. +..+++|++|++++|.+.
T Consensus       160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~  236 (768)
T 3rgz_A          160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS  236 (768)
T ss_dssp             SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC
T ss_pred             CCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC
Confidence            47788888887   8999999999999999986555  48899999999999999987777 999999999999999999


Q ss_pred             eeCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCC-CCCCEEecccCcCcccCCC-
Q 040833           78 GEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNA-SNLMRLVIAKNGFSGKVPS-  155 (503)
Q Consensus        78 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~-  155 (503)
                      +..|..+.++++|++|++++|.+.+.+|..   .+++|++|++++|.+++.+|..+... ++|++|++++|.+.+..+. 
T Consensus       237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~  313 (768)
T 3rgz_A          237 GDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF  313 (768)
T ss_dssp             SCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG
T ss_pred             CcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH
Confidence            888999999999999999999998777765   59999999999999998999988775 9999999999999877776 


Q ss_pred             ccCCCCCcEEEcccccCCCCCCCCccccc-cccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccccccc---
Q 040833          156 LKILHKLEWVGISRNHLGNGKKDDLEFVN-SLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNI---  231 (503)
Q Consensus       156 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---  231 (503)
                      +..+++|++|++++|.+.+      ..+. .+..+++|++|++++|.+.+..|..+..++.+|++|++++|.+.+..   
T Consensus       314 ~~~l~~L~~L~L~~n~l~~------~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~  387 (768)
T 3rgz_A          314 FGSCSLLESLALSSNNFSG------ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN  387 (768)
T ss_dssp             GGGCTTCCEEECCSSEEEE------ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT
T ss_pred             HhcCCCccEEECCCCcccC------cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh
Confidence            9999999999999998863      2232 26677888888888888877777777666445666666666555444   


Q ss_pred             -----------------------chhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCC
Q 040833          232 -----------------------PSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTL  288 (503)
Q Consensus       232 -----------------------~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  288 (503)
                                             |..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++
T Consensus       388 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  467 (768)
T 3rgz_A          388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT  467 (768)
T ss_dssp             TTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             hhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence                                   444444445555555555544444444555555555555555554444555555555


Q ss_pred             CCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCC
Q 040833          289 LITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDIS  368 (503)
Q Consensus       289 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  368 (503)
                      |++|++++|.+.+..|..+..+++|++|++++|++.+..|.++..++++ ++|++++|.+.+..|..+..+++|++|+++
T Consensus       468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  546 (768)
T 3rgz_A          468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL-AILKLSNNSFSGNIPAELGDCRSLIWLDLN  546 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC-CEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred             ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC-CEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence            5555555555554455555555555555555555555555555555555 555555555555555555555555555555


Q ss_pred             CCcccccCCcc---------------------------------------------------------------------
Q 040833          369 ENKLSGQIPSS---------------------------------------------------------------------  379 (503)
Q Consensus       369 ~n~l~~~~~~~---------------------------------------------------------------------  379 (503)
                      +|++++.+|..                                                                     
T Consensus       547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~  626 (768)
T 3rgz_A          547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP  626 (768)
T ss_dssp             SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred             CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence            55554333321                                                                     


Q ss_pred             -ccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC-CCccCCC
Q 040833          380 -IGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KGVFSNS  457 (503)
Q Consensus       380 -~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l  457 (503)
                       +..+++|+.|++++|.+++.+|..++.+++|+.|+|++|++++.+|..+..+++|++||+++|++++.+|. ...+++|
T Consensus       627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L  706 (768)
T 3rgz_A          627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML  706 (768)
T ss_dssp             SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred             hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence             22234455555555555555555555555555555555555555555555555555555555555555442 3334555


Q ss_pred             CceeccCC
Q 040833          458 SAISIDGN  465 (503)
Q Consensus       458 ~~l~~~~n  465 (503)
                      +.+++++|
T Consensus       707 ~~L~ls~N  714 (768)
T 3rgz_A          707 TEIDLSNN  714 (768)
T ss_dssp             SEEECCSS
T ss_pred             CEEECcCC
Confidence            55555555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.7e-54  Score=443.78  Aligned_cols=461  Identities=21%  Similarity=0.206  Sum_probs=369.6

Q ss_pred             CCccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeC
Q 040833            1 FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEI   80 (503)
Q Consensus         1 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~   80 (503)
                      +|.|++..|.+|+++++|++|++++|.+++..|+.|.++++|++|++++|.+....|.+|.++++|++|++++|.+....
T Consensus        42 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~  121 (606)
T 3t6q_A           42 FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID  121 (606)
T ss_dssp             TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG
T ss_pred             CCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC
Confidence            36777777778888888888888888887777777888888888888888887777777888888888888888877655


Q ss_pred             CccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCC--EEecccCcCcccCCCccC
Q 040833           81 PFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLM--RLVIAKNGFSGKVPSLKI  158 (503)
Q Consensus        81 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~--~L~l~~n~~~~~~~~l~~  158 (503)
                      +..|.++++|++|++++|.+.+..+..+.. +++|++|++++|.+++..+..+..+++|+  +|++++|.+.+..+....
T Consensus       122 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~  200 (606)
T 3t6q_A          122 FIPLHNQKTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD  200 (606)
T ss_dssp             GSCCTTCTTCCEEECCSSCCCCCCCCTTCC-CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT
T ss_pred             cchhccCCcccEEECCCCcccccCcccccC-CcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh
Confidence            667778888888888888776322233333 77888888888888766677777888887  777888877766554333


Q ss_pred             CCC----------------------------------------------------CcEEEcccccCCCCCCCCccccccc
Q 040833          159 LHK----------------------------------------------------LEWVGISRNHLGNGKKDDLEFVNSL  186 (503)
Q Consensus       159 l~~----------------------------------------------------L~~L~l~~n~l~~~~~~~~~~~~~l  186 (503)
                      ...                                                    |+++++++|.+..      .....+
T Consensus       201 ~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~------~~~~~~  274 (606)
T 3t6q_A          201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN------ISSNTF  274 (606)
T ss_dssp             TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS------CCTTTT
T ss_pred             hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc------cCHHHh
Confidence            333                                                    3444444444433      122346


Q ss_pred             cCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCC-ccccCCCCC
Q 040833          187 VNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIP-GSIVDLYKL  265 (503)
Q Consensus       187 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~-~~~~~~~~L  265 (503)
                      ..+++|++|++++|.+. .+|..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|
T Consensus       275 ~~l~~L~~L~l~~n~l~-~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  352 (606)
T 3t6q_A          275 HCFSGLQELDLTATHLS-ELPSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL  352 (606)
T ss_dssp             TTCTTCSEEECTTSCCS-CCCSSCCSCT-TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred             ccccCCCEEeccCCccC-CCChhhcccc-cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence            67788999999999887 6676777775 89999999999887777788889999999999998875444 458889999


Q ss_pred             CEEEccCCcccccC--CccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCc-chhccccccceeE
Q 040833          266 QRLALEGNKFWGEI--PSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPT-EVIGLSSLSIYLD  342 (503)
Q Consensus       266 ~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~l~~~L~  342 (503)
                      ++|++++|.+.+..  +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..++.+ +.|+
T Consensus       353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~  431 (606)
T 3t6q_A          353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL-KVLN  431 (606)
T ss_dssp             CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC-CEEE
T ss_pred             CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC-CEEE
Confidence            99999999988665  66788999999999999999888888899999999999999998866554 37778888 8999


Q ss_pred             ccCCCCccCCCcchhcCCCCCeEeCCCCccccc---CCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCc
Q 040833          343 LSQNQLNGPLPSNFGILKNLGAIDISENKLSGQ---IPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNN  419 (503)
Q Consensus       343 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  419 (503)
                      +++|.+.+..+..+..+++|++|++++|.+++.   .+..+..+++|++|++++|.+++..|..|.++++|++|++++|+
T Consensus       432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR  511 (606)
T ss_dssp             CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence            999999988888899999999999999999762   33578899999999999999998888999999999999999999


Q ss_pred             cccccCccCcCCCCCCeeecCCCcCcccCCC-CCccCCCCceeccCCCCCcccC
Q 040833          420 LSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KGVFSNSSAISIDGNDNLCGGI  472 (503)
Q Consensus       420 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~l~~~~n~~~c~~~  472 (503)
                      +++..|..+..++.| .|++++|++++..|. ...+++|+.+++++||+.|+|-
T Consensus       512 l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          512 LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            999999999999999 999999999977663 3557899999999999999753

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.1e-52  Score=430.76  Aligned_cols=461  Identities=20%  Similarity=0.162  Sum_probs=370.4

Q ss_pred             CCccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeC
Q 040833            1 FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEI   80 (503)
Q Consensus         1 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~   80 (503)
                      .|.+++..+.+|+++++|++|++++|.+++..|..|.++++|++|++++|.+....|++|.++++|++|++++|.+....
T Consensus        41 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  120 (606)
T 3vq2_A           41 FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE  120 (606)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSS
T ss_pred             CCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccc
Confidence            36677777778888888888888888887777777888888888888888887777778888888888888888877666


Q ss_pred             CccccCCCCCcEEEccCCCCcc-cCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCC----EEecccCcCcccCCC
Q 040833           81 PFSIYNLSSLNYICVPVNQLQG-SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLM----RLVIAKNGFSGKVPS  155 (503)
Q Consensus        81 ~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~  155 (503)
                      +..|+++++|++|++++|.+.+ .+|..+.. +++|++|++++|.+++..+..+..+.+|+    ++++++|.+....+.
T Consensus       121 ~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~  199 (606)
T 3vq2_A          121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSN-LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ  199 (606)
T ss_dssp             SSCCTTCTTCCEEECCSSCCCCCCCCGGGGT-CTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTT
T ss_pred             ccccCCCCCCCEEeCCCCcccceechHhHhh-cCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcc
Confidence            5678888888888888887764 45666654 88888888888888776666666655443    688888877766666


Q ss_pred             ccCCCCCcEEEcccccCCCC---------------------------------------------------CCCCccccc
Q 040833          156 LKILHKLEWVGISRNHLGNG---------------------------------------------------KKDDLEFVN  184 (503)
Q Consensus       156 l~~l~~L~~L~l~~n~l~~~---------------------------------------------------~~~~~~~~~  184 (503)
                      .....+|++|++++|.+...                                                   ...-.....
T Consensus       200 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~  279 (606)
T 3vq2_A          200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV  279 (606)
T ss_dssp             TTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG
T ss_pred             cccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccc
Confidence            44444788888888765310                                                   000001112


Q ss_pred             cccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCC
Q 040833          185 SLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYK  264 (503)
Q Consensus       185 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~  264 (503)
                      .+..+++|+.|+++++.+. .++ .+...+ +|++|++++|.+ +.+|. + .+++|++|++++|...+..  .+..+++
T Consensus       280 ~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~-~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~  351 (606)
T 3vq2_A          280 KFHCLANVSAMSLAGVSIK-YLE-DVPKHF-KWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPS  351 (606)
T ss_dssp             SCGGGTTCSEEEEESCCCC-CCC-CCCTTC-CCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTT
T ss_pred             ccccCCCCCEEEecCccch-hhh-hccccc-cCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCC
Confidence            2566788999999998886 344 566654 899999999998 45663 4 8899999999999554333  6778999


Q ss_pred             CCEEEccCCcccccC--CccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCC-cchhcccccccee
Q 040833          265 LQRLALEGNKFWGEI--PSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIP-TEVIGLSSLSIYL  341 (503)
Q Consensus       265 L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~~L  341 (503)
                      |++|++++|.+.+..  +..+..+++|++|++++|.+.. .+..+..+++|++|++++|.+.+..+ ..+..++++ ++|
T Consensus       352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L  429 (606)
T 3vq2_A          352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL-LYL  429 (606)
T ss_dssp             CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC-CEE
T ss_pred             CCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccC-CEE
Confidence            999999999988663  7778899999999999999885 45788999999999999999987766 678888888 999


Q ss_pred             EccCCCCccCCCcchhcCCCCCeEeCCCCcccc-cCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCcc
Q 040833          342 DLSQNQLNGPLPSNFGILKNLGAIDISENKLSG-QIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL  420 (503)
Q Consensus       342 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  420 (503)
                      ++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..|..+++|++|++++|++
T Consensus       430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  509 (606)
T 3vq2_A          430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL  509 (606)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence            999999998888999999999999999999987 4788999999999999999999988899999999999999999999


Q ss_pred             ccccCccCcCCCCCCeeecCCCcCcccCCCCCccC-CCCceeccCCCCCcccC
Q 040833          421 SGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFS-NSSAISIDGNDNLCGGI  472 (503)
Q Consensus       421 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~l~~l~~~~n~~~c~~~  472 (503)
                      ++..|..+..+++|++|++++|+++..++....++ +|+.+++++||+.|+|.
T Consensus       510 ~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          510 LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             SCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            98889999999999999999999996665555565 69999999999999764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.8e-51  Score=428.18  Aligned_cols=231  Identities=22%  Similarity=0.197  Sum_probs=170.4

Q ss_pred             CcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCC-ccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECc
Q 040833          241 LEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIP-SSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLS  319 (503)
Q Consensus       241 L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  319 (503)
                      |+.|++++|.+.+..+.++..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus       383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~  462 (680)
T 1ziw_A          383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR  462 (680)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred             CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence            3333333344444444555555666666666666554333 445566666666666666655555566666666666666


Q ss_pred             CCcCc--ccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCC--------ccccCCCCCCEE
Q 040833          320 NNNLS--GTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIP--------SSIGSCTRLEQL  389 (503)
Q Consensus       320 ~n~~~--~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------~~~~~~~~L~~L  389 (503)
                      +|.+.  +..|..+..++++ +.|++++|.+++..+..|..+++|++|++++|.+++..+        ..+.++++|++|
T Consensus       463 ~n~l~~~~~~p~~~~~l~~L-~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L  541 (680)
T 1ziw_A          463 RVALKNVDSSPSPFQPLRNL-TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL  541 (680)
T ss_dssp             TSCCBCTTCSSCTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred             cccccccccCCcccccCCCC-CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence            66654  3456777778888 899999999987777778889999999999998875422        237788999999


Q ss_pred             ECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC-CC-ccCCCCceeccCCCC
Q 040833          390 VMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KG-VFSNSSAISIDGNDN  467 (503)
Q Consensus       390 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~-~~~~l~~l~~~~n~~  467 (503)
                      ++++|.+++..+..|.++++|++|++++|+++...+..|..+++|+.|++++|++++..+. .. .+++|+.+++++|||
T Consensus       542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~  621 (680)
T 1ziw_A          542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF  621 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred             ECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCc
Confidence            9999999866666799999999999999999987778889999999999999999976653 22 578999999999999


Q ss_pred             CcccC
Q 040833          468 LCGGI  472 (503)
Q Consensus       468 ~c~~~  472 (503)
                      .|+|-
T Consensus       622 ~c~c~  626 (680)
T 1ziw_A          622 DCTCE  626 (680)
T ss_dssp             CBCCC
T ss_pred             ccCCc
Confidence            99874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.1e-50  Score=419.69  Aligned_cols=472  Identities=20%  Similarity=0.199  Sum_probs=237.4

Q ss_pred             CCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEc
Q 040833           16 SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICV   95 (503)
Q Consensus        16 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l   95 (503)
                      +++++|++++|.+++..+..|.++++|++|++++|.+.+..|++|.++++|++|++++|.+....+..|+++++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            45666666666666555555666666666666666666555566666666666666666665433335666666666666


Q ss_pred             cCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC---ccCCCCCcEEEcccccC
Q 040833           96 PVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS---LKILHKLEWVGISRNHL  172 (503)
Q Consensus        96 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---l~~l~~L~~L~l~~n~l  172 (503)
                      ++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.   ...+++|++|++++|.+
T Consensus       105 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          105 MSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            666655 33333233366666666666666555555555666666666666655544332   12345566666665555


Q ss_pred             CCCCCCCccccccc---------------------cCCCCCCEEECcCCcccccCchhHhhcc-ccCcEEEeeccccccc
Q 040833          173 GNGKKDDLEFVNSL---------------------VNASRLELLQISDNNFGGMLPEAVGNLS-TRLRILIVGNNQLFGN  230 (503)
Q Consensus       173 ~~~~~~~~~~~~~l---------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~  230 (503)
                      .......+.....+                     ...++|+.|++++|.+.+..+..+..+. ++|++|++++|.+.+.
T Consensus       184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~  263 (680)
T 1ziw_A          184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV  263 (680)
T ss_dssp             CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred             cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence            44222111100000                     0113444455555544444444443332 1245555555444444


Q ss_pred             cchhccCCCCCcEEEccCCcccccCCcc---------------------------------ccCCCCCCEEEccCCcccc
Q 040833          231 IPSGLRNLVNLEFLHLGGNQFTGRIPGS---------------------------------IVDLYKLQRLALEGNKFWG  277 (503)
Q Consensus       231 ~~~~~~~~~~L~~L~ls~n~~~~~~~~~---------------------------------~~~~~~L~~L~l~~n~~~~  277 (503)
                      .+..+..+++|++|++++|.+.+..+..                                 |..+++|++|++++|.+.+
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~  343 (680)
T 1ziw_A          264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG  343 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence            4444444444444444444444333333                                 3334444444444444444


Q ss_pred             cCCccccCCCCCCEEEccCC----------------------------cCcccCCccccCCCCCCEEECcCCcCcccCC-
Q 040833          278 EIPSSIGNLTLLITLNFEEN----------------------------MLEGSIPSSLGKCQNLISLNLSNNNLSGTIP-  328 (503)
Q Consensus       278 ~~~~~~~~~~~L~~L~l~~n----------------------------~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-  328 (503)
                      ..+..|..+++|++|++++|                            .+.+..+.++..+++|++|++++|.+.+.++ 
T Consensus       344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  423 (680)
T 1ziw_A          344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG  423 (680)
T ss_dssp             CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred             CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence            44444444444444444333                            3333333344444444444444444443332 


Q ss_pred             cchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCccc--ccCCccccCCCCCCEEECCCCcCcccCchhccC
Q 040833          329 TEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLS--GQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSS  406 (503)
Q Consensus       329 ~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  406 (503)
                      ..+..++.+ +++++++|.+.+..+..|..+++|++|++++|.+.  +..|..+..+++|++|++++|.+++..+..|.+
T Consensus       424 ~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~  502 (680)
T 1ziw_A          424 QEWRGLENI-FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG  502 (680)
T ss_dssp             GGGTTCTTC-CEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccccCcccc-cEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc
Confidence            333444444 44555555444444444444555555555555443  234555555666666666666666555555666


Q ss_pred             CCCCCEEeCCCCccccccC--------ccCcCCCCCCeeecCCCcCcccCC-CCCccCCCCceeccCCCC---------C
Q 040833          407 LRGIENLDLSRNNLSGRIP--------KYLENFPFLQNLNLSFNHFEGEVP-IKGVFSNSSAISIDGNDN---------L  468 (503)
Q Consensus       407 l~~L~~L~L~~n~l~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~~~~n~~---------~  468 (503)
                      +++|++|++++|+++...+        ..|..+++|++|++++|.++...+ ....+++|+.+++++|..         .
T Consensus       503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~  582 (680)
T 1ziw_A          503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN  582 (680)
T ss_dssp             CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence            6666666666666654321        124555666666666666663332 134455666666665521         1


Q ss_pred             cccCCCCCCCCCCCCCccccc
Q 040833          469 CGGISELHLSTCSIKESKQSR  489 (503)
Q Consensus       469 c~~~~~~~ls~~~~~~~~~~~  489 (503)
                      +..+..+++++|.+..+.+..
T Consensus       583 l~~L~~L~L~~N~l~~~~~~~  603 (680)
T 1ziw_A          583 QVSLKSLNLQKNLITSVEKKV  603 (680)
T ss_dssp             CTTCCEEECTTSCCCBCCHHH
T ss_pred             CCCCCEEECCCCcCCccChhH
Confidence            244555666666666655543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.1e-50  Score=415.87  Aligned_cols=443  Identities=21%  Similarity=0.185  Sum_probs=389.8

Q ss_pred             CCccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeC
Q 040833            1 FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEI   80 (503)
Q Consensus         1 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~   80 (503)
                      .|.+++..|.+|+++++|++|++++|.+++..|..|.++++|++|++++|.+....+..|..+++|++|++++|++.+..
T Consensus        66 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~  145 (606)
T 3t6q_A           66 RCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK  145 (606)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCC
T ss_pred             CCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccC
Confidence            47899999999999999999999999999888999999999999999999999877888999999999999999998655


Q ss_pred             CccccCCCCCcEEEccCCCCcccCchhhhcCCCCCC--EEEccCCcccccCCccccCC----------------------
Q 040833           81 PFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLE--VLNLCRNQFTGPIPASISNA----------------------  136 (503)
Q Consensus        81 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~--~L~l~~n~~~~~~~~~~~~~----------------------  136 (503)
                      ...+..+++|++|++++|.+.+..+..+. .+++|+  .|++++|.+++..+..+...                      
T Consensus       146 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  224 (606)
T 3t6q_A          146 LPKGFPTEKLKVLDFQNNAIHYLSKEDMS-SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN  224 (606)
T ss_dssp             CCTTCCCTTCCEEECCSSCCCEECHHHHH-TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTT
T ss_pred             cccccCCcccCEEEcccCcccccChhhhh-hhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccc
Confidence            45566699999999999999844455555 599999  89999999987666554321                      


Q ss_pred             -----------------------------CCCCEEecccCcCcccCCC-ccCCCCCcEEEcccccCCCCCCCCccccccc
Q 040833          137 -----------------------------SNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHLGNGKKDDLEFVNSL  186 (503)
Q Consensus       137 -----------------------------~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l  186 (503)
                                                   .+|++|++++|.+....+. +..+++|++|++++|.+..       ++..+
T Consensus       225 ~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------lp~~l  297 (606)
T 3t6q_A          225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-------LPSGL  297 (606)
T ss_dssp             CEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-------CCSSC
T ss_pred             cchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC-------CChhh
Confidence                                         1677888888888877766 8999999999999998873       34567


Q ss_pred             cCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccccccc-chhccCCCCCcEEEccCCcccccC--CccccCCC
Q 040833          187 VNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNI-PSGLRNLVNLEFLHLGGNQFTGRI--PGSIVDLY  263 (503)
Q Consensus       187 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ls~n~~~~~~--~~~~~~~~  263 (503)
                      ..+++|++|++++|.+.+..+..+..++ +|++|++++|.+.... +..+..+++|++|++++|.+.+..  +..+..++
T Consensus       298 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  376 (606)
T 3t6q_A          298 VGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS  376 (606)
T ss_dssp             CSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT
T ss_pred             cccccCCEEECccCCcCcCchhhhhccC-cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCC
Confidence            7889999999999999977787888886 8999999999887544 445889999999999999998655  67889999


Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCc-cccCCCCCCEEECcCCcCcccCCcchhccccccceeE
Q 040833          264 KLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPS-SLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLD  342 (503)
Q Consensus       264 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~  342 (503)
                      +|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+..++.+ ++|+
T Consensus       377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~  455 (606)
T 3t6q_A          377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-QHLN  455 (606)
T ss_dssp             TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-CEEE
T ss_pred             CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC-CEEE
Confidence            999999999999988889999999999999999999866554 48899999999999999998888888899999 9999


Q ss_pred             ccCCCCccC---CCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCc
Q 040833          343 LSQNQLNGP---LPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNN  419 (503)
Q Consensus       343 l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  419 (503)
                      +++|.+.+.   .+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++| +|++++|+
T Consensus       456 L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~  534 (606)
T 3t6q_A          456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH  534 (606)
T ss_dssp             CTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred             CCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence            999999862   33568899999999999999998889999999999999999999999999999999999 99999999


Q ss_pred             cccccCccCcCCCCCCeeecCCCcCcccCCCCCcc
Q 040833          420 LSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVF  454 (503)
Q Consensus       420 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  454 (503)
                      +++..|..+..+++|+.|++++|++.|.++..++.
T Consensus       535 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~  569 (606)
T 3t6q_A          535 ISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFL  569 (606)
T ss_dssp             CCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHH
T ss_pred             ccccCHhhcccCCCCCEEeCCCCCccccCCcHHHH
Confidence            99888888999999999999999999988754443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3e-50  Score=429.28  Aligned_cols=459  Identities=20%  Similarity=0.203  Sum_probs=290.2

Q ss_pred             CccccCCCcccCCCCCCcEEEcccCcCC-CCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeC
Q 040833            2 NELVGKVPGKLGSLSKLRILAMHRNNLS-GEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEI   80 (503)
Q Consensus         2 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~   80 (503)
                      |.|++..+.+|+++++|++|++++|... ...|+.|.++++|++|++++|.+.+..|++|.++++|++|++++|.+.+..
T Consensus        34 N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~  113 (844)
T 3j0a_A           34 NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV  113 (844)
T ss_dssp             CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCC
T ss_pred             CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccc
Confidence            4555555566666666666666665332 223555666666666666666665555666666666666666666555433


Q ss_pred             Ccc--ccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCC--CCCCEEecccCcCcccCCC-
Q 040833           81 PFS--IYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNA--SNLMRLVIAKNGFSGKVPS-  155 (503)
Q Consensus        81 ~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~-  155 (503)
                      +..  |.++++|++|++++|.+.+..+...+..+++|++|++++|.+++..+..+..+  ++|+.|++++|.+....+. 
T Consensus       114 ~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~  193 (844)
T 3j0a_A          114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD  193 (844)
T ss_dssp             STTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC
T ss_pred             ccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccc
Confidence            333  55666666666666655533332233346666666666666555555555544  5566666666555543332 


Q ss_pred             ccCCCC------CcEEEcccccCCCCCCCCcc------------------------------ccccccC--CCCCCEEEC
Q 040833          156 LKILHK------LEWVGISRNHLGNGKKDDLE------------------------------FVNSLVN--ASRLELLQI  197 (503)
Q Consensus       156 l~~l~~------L~~L~l~~n~l~~~~~~~~~------------------------------~~~~l~~--~~~L~~L~l  197 (503)
                      +..+.+      |+.|++++|.+.......+.                              ....+..  .++|++|++
T Consensus       194 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~L  273 (844)
T 3j0a_A          194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL  273 (844)
T ss_dssp             CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEEC
T ss_pred             hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEEC
Confidence            333332      67777766654431111000                              0001111  256777777


Q ss_pred             cCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccc
Q 040833          198 SDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWG  277 (503)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  277 (503)
                      ++|.+.+..+..+..++ +|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+..
T Consensus       274 s~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~  352 (844)
T 3j0a_A          274 SHGFVFSLNSRVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI  352 (844)
T ss_dssp             TTCCCCEECSCCSSSCC-CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC
T ss_pred             CCCcccccChhhhhcCC-CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc
Confidence            77766655566666554 67777777777766666667777777777777777766666667777777777777777766


Q ss_pred             cCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCc----------------------chhccc
Q 040833          278 EIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPT----------------------EVIGLS  335 (503)
Q Consensus       278 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~----------------------~~~~~~  335 (503)
                      ..+..|..+++|++|++++|.+...     ..+++|++|++++|++. .+|.                      .+..++
T Consensus       353 ~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~  426 (844)
T 3j0a_A          353 IQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVP  426 (844)
T ss_dssp             CCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCT
T ss_pred             cChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCC
Confidence            6666666777777777777766532     12444455544444443 2221                      123555


Q ss_pred             cccceeEccCCCCccCCCc-chhcCCCCCeEeCCCCccc-----ccCCccccCCCCCCEEECCCCcCcccCchhccCCCC
Q 040833          336 SLSIYLDLSQNQLNGPLPS-NFGILKNLGAIDISENKLS-----GQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRG  409 (503)
Q Consensus       336 ~l~~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  409 (503)
                      .+ +.|++++|.+.+..+. .+..+++|++|++++|.++     +..+..|.++++|+.|+|++|.+++..+..|.++++
T Consensus       427 ~L-~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  505 (844)
T 3j0a_A          427 HL-QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA  505 (844)
T ss_dssp             TC-CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred             cc-ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence            66 7777777777643322 3445677888888888775     233456788899999999999999888888999999


Q ss_pred             CCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCcccC
Q 040833          410 IENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGI  472 (503)
Q Consensus       410 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~~  472 (503)
                      |+.|+|++|++++..+..+.  ++|+.|++++|.+++..|  ..+.+++.+++++||+.|+|-
T Consensus       506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~--~~~~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP--DVFVSLSVLDITHNKFICECE  564 (844)
T ss_dssp             CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS--CCCSSCCEEEEEEECCCCSSS
T ss_pred             hheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCCh--hHhCCcCEEEecCCCcccccc
Confidence            99999999999877776665  889999999999998777  457899999999999999764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-48  Score=399.81  Aligned_cols=446  Identities=22%  Similarity=0.213  Sum_probs=310.8

Q ss_pred             CCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEc
Q 040833           16 SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICV   95 (503)
Q Consensus        16 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l   95 (503)
                      +++++|++++|.+++..+.+|.++++|++|++++|.+.+..+++|.++++|++|++++|++....+..|.++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            34666666666665555555666666666666666665555555666666666666666665555555666666666666


Q ss_pred             cCCCCcccCchhhhcCCCCCCEEEccCCcccc-cCCccccCCCCCCEEecccCcCcccCCC-ccCCCCC----cEEEccc
Q 040833           96 PVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG-PIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKL----EWVGISR  169 (503)
Q Consensus        96 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L----~~L~l~~  169 (503)
                      ++|.+. .++...+..+++|++|++++|.+++ .+|..+.++++|++|++++|.+....+. +..+++|    +.+++++
T Consensus       108 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~  186 (570)
T 2z63_A          108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (570)
T ss_dssp             TTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             cccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence            666555 3333223335666666666665554 2455566666666666666655544333 4444444    4555555


Q ss_pred             ccCCCCCCCCcc------------------ccccccCCC--------------------------------CCCEEECcC
Q 040833          170 NHLGNGKKDDLE------------------FVNSLVNAS--------------------------------RLELLQISD  199 (503)
Q Consensus       170 n~l~~~~~~~~~------------------~~~~l~~~~--------------------------------~L~~L~l~~  199 (503)
                      |.+.......+.                  ....+..++                                .++.+++++
T Consensus       187 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~  266 (570)
T 2z63_A          187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  266 (570)
T ss_dssp             CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred             CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence            554432111000                  000000001                                123333333


Q ss_pred             C-cccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCccccc
Q 040833          200 N-NFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGE  278 (503)
Q Consensus       200 ~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  278 (503)
                      + .+.+..+..+..++ +++++++++|.+. ..+..+..+ +|++|++++|.+. ..|.  ..+++|+.|++++|.....
T Consensus       267 ~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~  340 (570)
T 2z63_A          267 LDYYLDDIIDLFNCLT-NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNA  340 (570)
T ss_dssp             TTEEESCSTTTTGGGT-TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCB
T ss_pred             chhhhhhchhhhcCcC-cccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCccccc
Confidence            3 44445556666664 8999999998887 466667777 8999999999887 4443  4678899999999987755


Q ss_pred             CCccccCCCCCCEEEccCCcCcccC--CccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCC-cc
Q 040833          279 IPSSIGNLTLLITLNFEENMLEGSI--PSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLP-SN  355 (503)
Q Consensus       279 ~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~-~~  355 (503)
                      .+.  ..+++|++|++++|.+....  +..+..+++|++|++++|.+.+. +..+..++.+ ++|++++|.+.+..+ ..
T Consensus       341 ~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L-~~L~l~~n~l~~~~~~~~  416 (570)
T 2z63_A          341 FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQL-EHLDFQHSNLKQMSEFSV  416 (570)
T ss_dssp             CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTC-CEEECTTSEEESCTTSCT
T ss_pred             ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCC-CEEEccCCccccccchhh
Confidence            444  67899999999999987554  56678899999999999998844 4447788888 899999999987655 46


Q ss_pred             hhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCc-ccCchhccCCCCCCEEeCCCCccccccCccCcCCCCC
Q 040833          356 FGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ-GNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFL  434 (503)
Q Consensus       356 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  434 (503)
                      +..+++|++|++++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..|..+++|
T Consensus       417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  496 (570)
T 2z63_A          417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  496 (570)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence            888999999999999999888889999999999999999987 4678889999999999999999998888999999999


Q ss_pred             CeeecCCCcCcccCCC-CCccCCCCceeccCCCCCcccC
Q 040833          435 QNLNLSFNHFEGEVPI-KGVFSNSSAISIDGNDNLCGGI  472 (503)
Q Consensus       435 ~~L~l~~n~l~~~~~~-~~~~~~l~~l~~~~n~~~c~~~  472 (503)
                      ++|++++|++++..+. ...+++|+.+++++||+.|++.
T Consensus       497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            9999999999987663 4567899999999999998754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2e-48  Score=402.36  Aligned_cols=439  Identities=21%  Similarity=0.192  Sum_probs=376.2

Q ss_pred             CCccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeee-e
Q 040833            1 FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSG-E   79 (503)
Q Consensus         1 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~   79 (503)
                      .|.+++..|.+|+++++|++|++++|.+++..|+.|.++++|++|++++|.+....+..|.++++|++|++++|.+.+ .
T Consensus        65 ~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  144 (606)
T 3vq2_A           65 RCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK  144 (606)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC
T ss_pred             CCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee
Confidence            478999999999999999999999999998889999999999999999999998887889999999999999999985 5


Q ss_pred             CCccccCCCCCcEEEccCCCCcccCchhhhcCCCCC----CEEEccCCcccccCCccccCCCCCCEEecccCcCc-----
Q 040833           80 IPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNL----EVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFS-----  150 (503)
Q Consensus        80 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L----~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-----  150 (503)
                      +|..|+++++|++|++++|.+.+..+..+.. +.+|    .++++++|.+++..+..+... +|++|++++|.+.     
T Consensus       145 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~  222 (606)
T 3vq2_A          145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMK  222 (606)
T ss_dssp             CCGGGGTCTTCCEEECCSSCCCEECTTTTHH-HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHH
T ss_pred             chHhHhhcCCCCEEEccCCcceecChhhhhh-hhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHH
Confidence            6899999999999999999998555554443 4444    489999999986555555444 8888888887653     


Q ss_pred             -----------------------------------------------------ccCCCccCCCCCcEEEcccccCCCCCC
Q 040833          151 -----------------------------------------------------GKVPSLKILHKLEWVGISRNHLGNGKK  177 (503)
Q Consensus       151 -----------------------------------------------------~~~~~l~~l~~L~~L~l~~n~l~~~~~  177 (503)
                                                                           +..+.+..+++|+.++++++.+...  
T Consensus       223 ~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l--  300 (606)
T 3vq2_A          223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--  300 (606)
T ss_dssp             HHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCC--
T ss_pred             HHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhh--
Confidence                                                                 1122256678899999999988642  


Q ss_pred             CCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCccccc--C
Q 040833          178 DDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGR--I  255 (503)
Q Consensus       178 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~--~  255 (503)
                           . .+..+++|++|++++|.+. .+|..  .++ +|++|++++|......  .+..+++|++|++++|.+++.  .
T Consensus       301 -----~-~l~~~~~L~~L~l~~n~l~-~lp~~--~l~-~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~  368 (606)
T 3vq2_A          301 -----E-DVPKHFKWQSLSIIRCQLK-QFPTL--DLP-FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCC  368 (606)
T ss_dssp             -----C-CCCTTCCCSEEEEESCCCS-SCCCC--CCS-SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEEC
T ss_pred             -----h-hccccccCCEEEcccccCc-ccccC--CCC-ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcch
Confidence                 2 6777899999999999994 66743  564 8999999999654333  577899999999999998865  3


Q ss_pred             CccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCC-ccccCCCCCCEEECcCCcCcccCCcchhcc
Q 040833          256 PGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIP-SSLGKCQNLISLNLSNNNLSGTIPTEVIGL  334 (503)
Q Consensus       256 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  334 (503)
                      +..+..+++|++|++++|.+.+ .+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+
T Consensus       369 ~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  447 (606)
T 3vq2_A          369 SYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL  447 (606)
T ss_dssp             CHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred             hhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC
Confidence            7788999999999999999885 55788999999999999999987766 678999999999999999998888889999


Q ss_pred             ccccceeEccCCCCcc-CCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEE
Q 040833          335 SSLSIYLDLSQNQLNG-PLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENL  413 (503)
Q Consensus       335 ~~l~~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  413 (503)
                      +++ ++|++++|.+.+ ..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|++|
T Consensus       448 ~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  526 (606)
T 3vq2_A          448 TSL-NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL  526 (606)
T ss_dssp             TTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEE
T ss_pred             CCC-CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEE
Confidence            999 999999999987 468889999999999999999998889999999999999999999998889999999999999


Q ss_pred             eCCCCccccccCccCcCCC-CCCeeecCCCcCcccCCCCCccCCCC
Q 040833          414 DLSRNNLSGRIPKYLENFP-FLQNLNLSFNHFEGEVPIKGVFSNSS  458 (503)
Q Consensus       414 ~L~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~l~  458 (503)
                      ++++|+++ .+|..+..++ +|++|++++|++.+.++..+....++
T Consensus       527 ~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~  571 (606)
T 3vq2_A          527 DCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVK  571 (606)
T ss_dssp             ECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTT
T ss_pred             ECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHH
Confidence            99999999 4555588887 59999999999999888655544443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-48  Score=401.78  Aligned_cols=443  Identities=20%  Similarity=0.205  Sum_probs=380.8

Q ss_pred             CCccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeC
Q 040833            1 FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEI   80 (503)
Q Consensus         1 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~   80 (503)
                      .|.+++..+.+|+++++|++|++++|.+++..++.|.++++|++|++++|.+....|++|..+++|++|++++|.+....
T Consensus        37 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~  116 (570)
T 2z63_A           37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE  116 (570)
T ss_dssp             SCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred             CCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCC
Confidence            47888888999999999999999999999888889999999999999999999888899999999999999999999666


Q ss_pred             CccccCCCCCcEEEccCCCCcc-cCchhhhcCCCCCCEEEccCCcccccCCccccCCCCC----CEEecccCcCcccCCC
Q 040833           81 PFSIYNLSSLNYICVPVNQLQG-SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNL----MRLVIAKNGFSGKVPS  155 (503)
Q Consensus        81 ~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L----~~L~l~~n~~~~~~~~  155 (503)
                      +..|+++++|++|++++|.+.+ .+|..+.. +++|++|++++|.+++..+..+..+++|    +++++++|.+....+.
T Consensus       117 ~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~  195 (570)
T 2z63_A          117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG  195 (570)
T ss_dssp             TCSCTTCTTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred             CccccccccccEEecCCCccceecChhhhcc-cCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHH
Confidence            6679999999999999999975 46887775 9999999999999998778888888888    8999999999887776


Q ss_pred             ccCCCCCcEEEcccccCCCC-------------------------------CCC---------------------Ccccc
Q 040833          156 LKILHKLEWVGISRNHLGNG-------------------------------KKD---------------------DLEFV  183 (503)
Q Consensus       156 l~~l~~L~~L~l~~n~l~~~-------------------------------~~~---------------------~~~~~  183 (503)
                      .....+|+++++++|.....                               ...                     .....
T Consensus       196 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~  275 (570)
T 2z63_A          196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII  275 (570)
T ss_dssp             TTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST
T ss_pred             HhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhch
Confidence            33334788888877632110                               000                     00122


Q ss_pred             ccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCC
Q 040833          184 NSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLY  263 (503)
Q Consensus       184 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~  263 (503)
                      ..+..+++|++|++++|.+. .+|..+...  ++++|++++|.+. ..+.  ..+++|++|++++|.+.+..+.  ..++
T Consensus       276 ~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~  347 (570)
T 2z63_A          276 DLFNCLTNVSSFSLVSVTIE-RVKDFSYNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLP  347 (570)
T ss_dssp             TTTGGGTTCSEEEEESCEEC-SCCBCCSCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCT
T ss_pred             hhhcCcCcccEEEecCccch-hhhhhhccC--CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCC
Confidence            44667899999999999988 566666665  8999999999988 3443  4678999999999998765544  6889


Q ss_pred             CCCEEEccCCcccccC--CccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCC-cchhccccccce
Q 040833          264 KLQRLALEGNKFWGEI--PSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIP-TEVIGLSSLSIY  340 (503)
Q Consensus       264 ~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~~  340 (503)
                      +|+.|++++|.+.+..  +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..++++ ++
T Consensus       348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~  425 (570)
T 2z63_A          348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IY  425 (570)
T ss_dssp             TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC-CE
T ss_pred             CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC-CE
Confidence            9999999999988654  56788999999999999999865554 8899999999999999986655 467788888 99


Q ss_pred             eEccCCCCccCCCcchhcCCCCCeEeCCCCccc-ccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCc
Q 040833          341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLS-GQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNN  419 (503)
Q Consensus       341 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  419 (503)
                      |++++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|.+++..|..|..+++|++|++++|+
T Consensus       426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  505 (570)
T 2z63_A          426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ  505 (570)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence            999999999888889999999999999999997 4688899999999999999999998889999999999999999999


Q ss_pred             cccccCccCcCCCCCCeeecCCCcCcccCCCCCcc
Q 040833          420 LSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVF  454 (503)
Q Consensus       420 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  454 (503)
                      +++..+..|..+++|++|++++|++++.+|..+.+
T Consensus       506 l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  540 (570)
T 2z63_A          506 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  540 (570)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             CCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence            99888888999999999999999999998866554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-47  Score=408.99  Aligned_cols=455  Identities=20%  Similarity=0.174  Sum_probs=361.5

Q ss_pred             CCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccc-cCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcE
Q 040833           14 SLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFV-GQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNY   92 (503)
Q Consensus        14 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~   92 (503)
                      ..+++++|++++|.+++..+..|.++++|++|++++|... .+.|.+|.++++|++|+|++|.+....|..|.++++|++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            4588999999999999888999999999999999999544 444889999999999999999999888999999999999


Q ss_pred             EEccCCCCcccCchh-hhcCCCCCCEEEccCCcccccCC-ccccCCCCCCEEecccCcCcccCCC-ccCC--CCCcEEEc
Q 040833           93 ICVPVNQLQGSLPSD-LGFTLPNLEVLNLCRNQFTGPIP-ASISNASNLMRLVIAKNGFSGKVPS-LKIL--HKLEWVGI  167 (503)
Q Consensus        93 L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l--~~L~~L~l  167 (503)
                      |++++|.+.+.+|.. .+..+++|++|++++|.+++..+ ..|.++++|++|++++|.+....+. +..+  ++|+.|++
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L  181 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL  181 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence            999999998666654 34569999999999999986654 5799999999999999999876655 6666  89999999


Q ss_pred             ccccCCCCCCCCccccccccCCC------CCCEEECcCCcccccCchhHhhc----------------------------
Q 040833          168 SRNHLGNGKKDDLEFVNSLVNAS------RLELLQISDNNFGGMLPEAVGNL----------------------------  213 (503)
Q Consensus       168 ~~n~l~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~~~~----------------------------  213 (503)
                      ++|.+....      ...+..++      .|++|++++|.+.+..+..+...                            
T Consensus       182 ~~n~l~~~~------~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~  255 (844)
T 3j0a_A          182 AANSLYSRV------SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP  255 (844)
T ss_dssp             CCSBSCCCC------CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred             CCCcccccc------ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence            999987632      22222232      49999999997765544433321                            


Q ss_pred             ---------cccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCcccc
Q 040833          214 ---------STRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIG  284 (503)
Q Consensus       214 ---------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  284 (503)
                               +++++.|++++|.+....+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.
T Consensus       256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  335 (844)
T 3j0a_A          256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY  335 (844)
T ss_dssp             GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred             ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence                     24799999999999888788899999999999999999988888999999999999999999888888899


Q ss_pred             CCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCc---------------
Q 040833          285 NLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLN---------------  349 (503)
Q Consensus       285 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~---------------  349 (503)
                      .+++|++|++++|.+....+..+..+++|++|++++|.+.+ ++.    ++++ +.+++++|++.               
T Consensus       336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~----~~~L-~~L~l~~N~l~~l~~~~~~l~~L~ls  409 (844)
T 3j0a_A          336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHF----IPSI-PDIFLSGNKLVTLPKINLTANLIHLS  409 (844)
T ss_dssp             SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSS----CCSC-SEEEEESCCCCCCCCCCTTCCEEECC
T ss_pred             CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccC----CCCc-chhccCCCCcccccccccccceeecc
Confidence            99999999999999987788889999999999999999873 221    3333 45555555544               


Q ss_pred             -----cCCC-cchhcCCCCCeEeCCCCcccccCCc-cccCCCCCCEEECCCCcCc-----ccCchhccCCCCCCEEeCCC
Q 040833          350 -----GPLP-SNFGILKNLGAIDISENKLSGQIPS-SIGSCTRLEQLVMNGNFFQ-----GNIPSSLSSLRGIENLDLSR  417 (503)
Q Consensus       350 -----~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~  417 (503)
                           +... ..+..+++|++|++++|.+++..+. .+..+++|+.|++++|.++     +..+..|.++++|++|+|++
T Consensus       410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~  489 (844)
T 3j0a_A          410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH  489 (844)
T ss_dssp             SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred             cCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCC
Confidence                 2211 1234678888888888888754332 4556788888888888876     33345678888999999999


Q ss_pred             CccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCc------ccCCCCCCCCCC
Q 040833          418 NNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLC------GGISELHLSTCS  481 (503)
Q Consensus       418 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c------~~~~~~~ls~~~  481 (503)
                      |++++..+..|..+++|+.|++++|++++..+. ...++|+.+++++|....      ..++.+++++|+
T Consensus       490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np  558 (844)
T 3j0a_A          490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN-DLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNK  558 (844)
T ss_dssp             HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCC-CCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEEEC
T ss_pred             CcccccChhHccchhhhheeECCCCCCCccChh-hhhccccEEECCCCcCCCCChhHhCCcCEEEecCCC
Confidence            999888888888899999999999998866553 233788888888874332      234555666553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=9.8e-47  Score=385.11  Aligned_cols=438  Identities=20%  Similarity=0.222  Sum_probs=294.2

Q ss_pred             CCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEc
Q 040833           16 SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICV   95 (503)
Q Consensus        16 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l   95 (503)
                      ++|++|++++|.+++..|..|.++++|++|++++|.+.+..|++|..+++|++|++++|++.+..+..|+++++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            56777777777777666666777777777777777777666667777777777777777776555555777777777777


Q ss_pred             cCCCCcc-cCchhhhcCCCCCCEEEccCCcccccC-CccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEEEcccccC
Q 040833           96 PVNQLQG-SLPSDLGFTLPNLEVLNLCRNQFTGPI-PASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHL  172 (503)
Q Consensus        96 ~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~n~l  172 (503)
                      ++|.+.+ ..|..+. .+++|++|++++|.+.+.+ +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+
T Consensus       106 s~n~l~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          106 MGNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             TTCCCSSSCSSCSCT-TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred             CCCcccccchhhhhh-ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence            7776653 2233333 4677777777777632233 34666777777777777776665444 66666666666666554


Q ss_pred             CCCCCCCccccccccCCCCCCEEECcCCcccccC--chhHhhccccCcEEEeeccccccccc----h-------------
Q 040833          173 GNGKKDDLEFVNSLVNASRLELLQISDNNFGGML--PEAVGNLSTRLRILIVGNNQLFGNIP----S-------------  233 (503)
Q Consensus       173 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~----~-------------  233 (503)
                      ..      .....+..+++|++|++++|.+.+..  +..+....+.++.++++++.+.+..+    .             
T Consensus       185 ~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l  258 (549)
T 2z81_A          185 AF------LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF  258 (549)
T ss_dssp             TT------HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred             cc------cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence            32      11111223455666666665554321  11111112345555555544432211    1             


Q ss_pred             -----------------hccCCCCCcEEEccCCccccc-----CCccccCCCCCCEEEccCCcccccCCcc-ccCCCCCC
Q 040833          234 -----------------GLRNLVNLEFLHLGGNQFTGR-----IPGSIVDLYKLQRLALEGNKFWGEIPSS-IGNLTLLI  290 (503)
Q Consensus       234 -----------------~~~~~~~L~~L~ls~n~~~~~-----~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~L~  290 (503)
                                       .+..+++++.|++.++.+...     .+..+...++|+.|++++|.+. ..|.. +..+++|+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~  337 (549)
T 2z81_A          259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLE  337 (549)
T ss_dssp             ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCC
T ss_pred             ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCcccc
Confidence                             223444555555555443321     1111233467888888888887 44544 46789999


Q ss_pred             EEEccCCcCcccCC---ccccCCCCCCEEECcCCcCcccCC--cchhccccccceeEccCCCCccCCCcchhcCCCCCeE
Q 040833          291 TLNFEENMLEGSIP---SSLGKCQNLISLNLSNNNLSGTIP--TEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAI  365 (503)
Q Consensus       291 ~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L  365 (503)
                      +|++++|.+.+..+   ..+..+++|++|++++|.+++..+  ..+..++++ ++|++++|+++ .+|..+..+++|++|
T Consensus       338 ~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L-~~L~Ls~N~l~-~lp~~~~~~~~L~~L  415 (549)
T 2z81_A          338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL-TSLDISRNTFH-PMPDSCQWPEKMRFL  415 (549)
T ss_dssp             EEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC-CEEECTTCCCC-CCCSCCCCCTTCCEE
T ss_pred             EEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC-CEEECCCCCCc-cCChhhcccccccEE
Confidence            99999999886543   346788999999999999974422  456778888 89999999998 567778888999999


Q ss_pred             eCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCc
Q 040833          366 DISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE  445 (503)
Q Consensus       366 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  445 (503)
                      ++++|.++ .++..+.  ++|++|++++|.+++..    ..+++|++|++++|+++ .+|. ...+++|++|++++|+++
T Consensus       416 ~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~  486 (549)
T 2z81_A          416 NLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLK  486 (549)
T ss_dssp             ECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCC
T ss_pred             ECCCCCcc-cccchhc--CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccC
Confidence            99999987 4444432  68999999999998542    57899999999999998 4554 467899999999999999


Q ss_pred             ccCCC-CCccCCCCceeccCCCCCcccC
Q 040833          446 GEVPI-KGVFSNSSAISIDGNDNLCGGI  472 (503)
Q Consensus       446 ~~~~~-~~~~~~l~~l~~~~n~~~c~~~  472 (503)
                      +..|. ...+++|+.+++++||+.|+|.
T Consensus       487 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          487 SVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            87764 5668999999999999999764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.6e-46  Score=379.23  Aligned_cols=446  Identities=22%  Similarity=0.213  Sum_probs=296.2

Q ss_pred             CccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCC
Q 040833            2 NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIP   81 (503)
Q Consensus         2 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~   81 (503)
                      |+++ .+|..+.  ++|++|++++|.+++..|+.|.++++|++|++++|.+.+..|++|.++++|++|++++|+++ .+|
T Consensus        10 n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp   85 (520)
T 2z7x_B           10 NGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KIS   85 (520)
T ss_dssp             SCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEE
T ss_pred             CCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecC
Confidence            4455 3454444  66666666666666555566666666666666666666666666666666666666666666 334


Q ss_pred             ccccCCCCCcEEEccCCCCcc-cCchhhhcCCCCCCEEEccCCcccccCCccccCCCCC--CEEecccCcC--cccCCC-
Q 040833           82 FSIYNLSSLNYICVPVNQLQG-SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNL--MRLVIAKNGF--SGKVPS-  155 (503)
Q Consensus        82 ~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L--~~L~l~~n~~--~~~~~~-  155 (503)
                      ..  .+++|++|++++|.+.+ .+|..+.. +++|++|++++|.+++   ..+..+++|  ++|++++|.+  .+..+. 
T Consensus        86 ~~--~l~~L~~L~L~~N~l~~~~~p~~~~~-l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~  159 (520)
T 2z7x_B           86 CH--PTVNLKHLDLSFNAFDALPICKEFGN-MSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEG  159 (520)
T ss_dssp             CC--CCCCCSEEECCSSCCSSCCCCGGGGG-CTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred             cc--ccCCccEEeccCCccccccchhhhcc-CCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccc
Confidence            33  56666666666666653 24455543 6666666666666653   345555555  6666666665  332222 


Q ss_pred             ccCCC-CCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCc-------ccccCchhHhhccccCcEEEeecccc
Q 040833          156 LKILH-KLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNN-------FGGMLPEAVGNLSTRLRILIVGNNQL  227 (503)
Q Consensus       156 l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~  227 (503)
                      +..+. ....+++++|.+...     .....+..+++|+.+++++|.       +.+..+ .+..++ +++.++++++.+
T Consensus       160 l~~l~~~~l~l~l~~n~~~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~-~L~~L~l~~~~l  232 (520)
T 2z7x_B          160 LQDFNTESLHIVFPTNKEFHF-----ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNP-KLSNLTLNNIET  232 (520)
T ss_dssp             TTTCCEEEEEEECCSSSCCCC-----CCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCT-TCCEEEEEEEEE
T ss_pred             ccccccceEEEEeccCcchhh-----hhhhhhhcccceeeccccccccccccceeecchh-hhcccc-chhhcccccccc
Confidence            33322 122334444443321     112234556778888888775       443333 455554 788888888877


Q ss_pred             ccccchhc---cCCCCCcEEEccCCcccccCCccc-----cCCCCCCEEEccCCcccccCCccccCC---CCCCEEEccC
Q 040833          228 FGNIPSGL---RNLVNLEFLHLGGNQFTGRIPGSI-----VDLYKLQRLALEGNKFWGEIPSSIGNL---TLLITLNFEE  296 (503)
Q Consensus       228 ~~~~~~~~---~~~~~L~~L~ls~n~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~  296 (503)
                      .+.....+   ...++|++|++++|.+.+..|..+     ..++.|+.+++++|.+ ......+..+   ++|++|++++
T Consensus       233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~  311 (520)
T 2z7x_B          233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSG  311 (520)
T ss_dssp             EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEES
T ss_pred             CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCC
Confidence            64322211   123588888888888887777777     7888888888888887 2222333333   5788888888


Q ss_pred             CcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCcc--CCCcchhcCCCCCeEeCCCCcccc
Q 040833          297 NMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNG--PLPSNFGILKNLGAIDISENKLSG  374 (503)
Q Consensus       297 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~  374 (503)
                      |.+....  ....+++|++|++++|.+.+..|..+..++.+ ++|++++|.+++  ..+..+..+++|++|++++|.+++
T Consensus       312 n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~  388 (520)
T 2z7x_B          312 TRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTEL-ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY  388 (520)
T ss_dssp             SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSC-CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred             Ccccccc--chhhCCcccEEEeECCccChhhhhhhccCCCC-CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence            8876432  12577888888888888887778788888888 888888888875  344567788888888888888886


Q ss_pred             cCCc-cccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC-CC
Q 040833          375 QIPS-SIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KG  452 (503)
Q Consensus       375 ~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~  452 (503)
                      .+|. .+..+++|++|++++|.+++..+..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++..++. ..
T Consensus       389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~  465 (520)
T 2z7x_B          389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFD  465 (520)
T ss_dssp             CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhc
Confidence            3444 477788888888888888766666553  68888888888888 5666666888888888888888855443 45


Q ss_pred             ccCCCCceeccCCCCCccc
Q 040833          453 VFSNSSAISIDGNDNLCGG  471 (503)
Q Consensus       453 ~~~~l~~l~~~~n~~~c~~  471 (503)
                      .+++|+.+++++||+.|+|
T Consensus       466 ~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          466 RLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             TCTTCCEEECCSSCBCCCH
T ss_pred             cCCcccEEECcCCCCcccC
Confidence            5778888888888888864

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.3e-45  Score=380.84  Aligned_cols=413  Identities=21%  Similarity=0.286  Sum_probs=345.2

Q ss_pred             CCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccc------c---------------------------CCCccc--
Q 040833           16 SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFV------G---------------------------QIPETL--   60 (503)
Q Consensus        16 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~------~---------------------------~~~~~~--   60 (503)
                      .+++.|+|+++.+++..|.+|+++++|++|++++|.+.      +                           ..|..+  
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            57899999999999999999999999999999999652      1                           000000  


Q ss_pred             -----------------cCCCCCCEEEcc--cceeeeeCCccccCCCCCcEEEccCCCCccc-----------------C
Q 040833           61 -----------------SQLKRMLYLLLG--VNKLSGEIPFSIYNLSSLNYICVPVNQLQGS-----------------L  104 (503)
Q Consensus        61 -----------------~~l~~L~~L~L~--~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~-----------------~  104 (503)
                                       .....++.+.+.  .|++++ +|..++++++|++|++++|.+.+.                 +
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i  239 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK  239 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence                             111223333332  578886 899999999999999999999864                 8


Q ss_pred             chhhh--cCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCc-Ccc-cCCC-ccCC------CCCcEEEcccccCC
Q 040833          105 PSDLG--FTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNG-FSG-KVPS-LKIL------HKLEWVGISRNHLG  173 (503)
Q Consensus       105 ~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~-l~~l------~~L~~L~l~~n~l~  173 (503)
                      |..+.  . +++|++|++++|.+.+.+|..+.++++|++|++++|. +.+ ..|. +..+      ++|++|++++|.++
T Consensus       240 p~~l~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          240 TEDLKWDN-LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TSCCCGGG-CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             chhhhhcc-cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            88877  5 9999999999999999999999999999999999998 776 4443 5554      89999999999887


Q ss_pred             CCCCCCccccc--cccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCC-CcEEEccCCc
Q 040833          174 NGKKDDLEFVN--SLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN-LEFLHLGGNQ  250 (503)
Q Consensus       174 ~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~ls~n~  250 (503)
                      .       ++.  .+..+++|++|++++|.+.+.+| .+..++ +|++|++++|.+. .+|..+..+++ |++|++++|.
T Consensus       319 ~-------ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~  388 (636)
T 4eco_A          319 T-------FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK  388 (636)
T ss_dssp             S-------CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC
T ss_pred             c-------cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc
Confidence            3       344  67788999999999999997788 777775 8999999999998 77778999999 9999999999


Q ss_pred             ccccCCccccCCC--CCCEEEccCCcccccCCcccc-------CCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCC
Q 040833          251 FTGRIPGSIVDLY--KLQRLALEGNKFWGEIPSSIG-------NLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNN  321 (503)
Q Consensus       251 ~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  321 (503)
                      ++ .+|..+....  +|+.|++++|.+.+..|..+.       .+++|++|++++|.+....+..+..+++|++|++++|
T Consensus       389 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N  467 (636)
T 4eco_A          389 LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN  467 (636)
T ss_dssp             CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS
T ss_pred             Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC
Confidence            99 6777776654  899999999999988888887       7889999999999999665556777999999999999


Q ss_pred             cCcccCCcchhccc--------cccceeEccCCCCccCCCcchh--cCCCCCeEeCCCCcccccCCccccCCCCCCEEEC
Q 040833          322 NLSGTIPTEVIGLS--------SLSIYLDLSQNQLNGPLPSNFG--ILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVM  391 (503)
Q Consensus       322 ~~~~~~~~~~~~~~--------~l~~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  391 (503)
                      .+. .+|.......        .+ +.|++++|.++ .+|..+.  .+++|++|++++|.+++ +|..+..+++|++|++
T Consensus       468 ~l~-~i~~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L  543 (636)
T 4eco_A          468 MLT-EIPKNSLKDENENFKNTYLL-TSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI  543 (636)
T ss_dssp             CCS-BCCSSSSEETTEECTTGGGC-CEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEEC
T ss_pred             CCC-CcCHHHhccccccccccCCc-cEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEEC
Confidence            998 6665544433        66 99999999999 6677776  89999999999999996 8888999999999999


Q ss_pred             ------CCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccC
Q 040833          392 ------NGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEV  448 (503)
Q Consensus       392 ------~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  448 (503)
                            ++|.+.+.+|..+..+++|++|+|++|++. .+|..+.  ++|+.|++++|++.+..
T Consensus       544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             CCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcccc
Confidence                  567788899999999999999999999995 5666554  89999999999988654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.1e-45  Score=369.68  Aligned_cols=437  Identities=21%  Similarity=0.241  Sum_probs=357.7

Q ss_pred             CCccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeee-e
Q 040833            1 FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSG-E   79 (503)
Q Consensus         1 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~   79 (503)
                      +|.|++..|.+|+++++|++|++++|.+++..|+.|.++++|++|++++|.+.. +|..  .+++|++|++++|.+.+ .
T Consensus        30 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~  106 (520)
T 2z7x_B           30 QNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALP  106 (520)
T ss_dssp             SSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCC
T ss_pred             CCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEeccCCcccccc
Confidence            478888888999999999999999999998889999999999999999999994 5554  89999999999999986 4


Q ss_pred             CCccccCCCCCcEEEccCCCCcccCchhhhcCCCCC--CEEEccCCcc--cccCCccccCCC-CCCEEecccCcCcccCC
Q 040833           80 IPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNL--EVLNLCRNQF--TGPIPASISNAS-NLMRLVIAKNGFSGKVP  154 (503)
Q Consensus        80 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L--~~L~l~~n~~--~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~  154 (503)
                      .|..|+++++|++|++++|.+.+   ..+. .+++|  ++|++++|.+  .+..|..+..+. +..++++++|.+.+..+
T Consensus       107 ~p~~~~~l~~L~~L~L~~n~l~~---~~~~-~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~  182 (520)
T 2z7x_B          107 ICKEFGNMSQLKFLGLSTTHLEK---SSVL-PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFIL  182 (520)
T ss_dssp             CCGGGGGCTTCCEEEEEESSCCG---GGGG-GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCC
T ss_pred             chhhhccCCcceEEEecCcccch---hhcc-ccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhh
Confidence            67899999999999999999874   2333 47788  9999999999  767777777665 34467788888776555


Q ss_pred             C--ccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhh--ccccCcEEEeeccccccc
Q 040833          155 S--LKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGN--LSTRLRILIVGNNQLFGN  230 (503)
Q Consensus       155 ~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~  230 (503)
                      .  +..+++|+.+++++|...............+..+++|+.|+++++.+.+.....+..  ..+++++|++++|.+.+.
T Consensus       183 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  262 (520)
T 2z7x_B          183 DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ  262 (520)
T ss_dssp             CCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC
T ss_pred             hhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc
Confidence            4  788999999999998621100000022336778899999999999877543322221  113899999999999877


Q ss_pred             cchhc-----cCCCCCcEEEccCCcccccCC-ccccCC---CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcc
Q 040833          231 IPSGL-----RNLVNLEFLHLGGNQFTGRIP-GSIVDL---YKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEG  301 (503)
Q Consensus       231 ~~~~~-----~~~~~L~~L~ls~n~~~~~~~-~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  301 (503)
                      .|..+     ..+++|+.+++++|.+  ..| ..+..+   .+|+.|++++|.+....  .+..+++|++|++++|.+.+
T Consensus       263 ~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~  338 (520)
T 2z7x_B          263 LDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTD  338 (520)
T ss_dssp             CCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCT
T ss_pred             cccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccCh
Confidence            88877     8899999999999988  234 344333   67999999999976432  23688999999999999998


Q ss_pred             cCCccccCCCCCCEEECcCCcCcc--cCCcchhccccccceeEccCCCCccCCCc-chhcCCCCCeEeCCCCcccccCCc
Q 040833          302 SIPSSLGKCQNLISLNLSNNNLSG--TIPTEVIGLSSLSIYLDLSQNQLNGPLPS-NFGILKNLGAIDISENKLSGQIPS  378 (503)
Q Consensus       302 ~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~l~~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~  378 (503)
                      ..+..+..+++|++|++++|++.+  ..|..+..++.+ ++|++++|.+.+.++. .+..+++|++|++++|.+++..+.
T Consensus       339 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L-~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  417 (520)
T 2z7x_B          339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR  417 (520)
T ss_dssp             TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC-CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG
T ss_pred             hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC-CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh
Confidence            888899999999999999999985  455778888998 9999999999974544 478899999999999999877776


Q ss_pred             cccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCC
Q 040833          379 SIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKG  452 (503)
Q Consensus       379 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  452 (503)
                      .+.  ++|++|++++|.++ .+|..+..+++|++|++++|+++...+..+..+++|++|++++|++.|.++..+
T Consensus       418 ~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~  488 (520)
T 2z7x_B          418 CLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  488 (520)
T ss_dssp             SCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred             hhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchH
Confidence            654  79999999999999 677777799999999999999996555559999999999999999999877433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2e-44  Score=368.04  Aligned_cols=447  Identities=21%  Similarity=0.199  Sum_probs=336.2

Q ss_pred             CCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEE
Q 040833           15 LSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYIC   94 (503)
Q Consensus        15 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~   94 (503)
                      |+...+.+.+++.++ .+|..+.  ++|++|++++|.+.+..|.+|.++++|++|++++|++.+..|.+|.++++|++|+
T Consensus         4 C~~~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A            4 CDASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             ECTTSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence            455556788899998 6776664  8999999999999988899999999999999999999988889999999999999


Q ss_pred             ccCCCCcccCchhhhcCCCCCCEEEccCCcccc-cCCccccCCCCCCEEecccCcC-cccCC-CccCCCCCcEEEccccc
Q 040833           95 VPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG-PIPASISNASNLMRLVIAKNGF-SGKVP-SLKILHKLEWVGISRNH  171 (503)
Q Consensus        95 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~-~~~~~-~l~~l~~L~~L~l~~n~  171 (503)
                      +++|.+. .++...+..+++|++|++++|.+++ ..+..+..+++|++|++++|.+ ....+ .+..+++|++|++++|.
T Consensus        81 Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A           81 LSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS  159 (549)
T ss_dssp             CTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             CCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence            9999998 5555544469999999999999985 3567899999999999999984 44443 38999999999999999


Q ss_pred             CCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccccccc---chhccCCCCCcEEEccC
Q 040833          172 LGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNI---PSGLRNLVNLEFLHLGG  248 (503)
Q Consensus       172 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~ls~  248 (503)
                      +..      ..+..+..+++|++|+++++.+. ..+..+....++|++|++++|.+.+..   ......+++|+.|++++
T Consensus       160 l~~------~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~  232 (549)
T 2z81_A          160 LRN------YQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG  232 (549)
T ss_dssp             CCE------ECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEES
T ss_pred             ccc------cChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccc
Confidence            876      45567778899999999999886 445554443359999999999988642   12234578899999998


Q ss_pred             CcccccC----CccccCCCCCCEEEccCCcccccCC------cc-----------------------------ccCCCCC
Q 040833          249 NQFTGRI----PGSIVDLYKLQRLALEGNKFWGEIP------SS-----------------------------IGNLTLL  289 (503)
Q Consensus       249 n~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~~~------~~-----------------------------~~~~~~L  289 (503)
                      |.+.+..    +..+..++.|+.+++++|.+.+...      ..                             +...++|
T Consensus       233 n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L  312 (549)
T 2z81_A          233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV  312 (549)
T ss_dssp             CEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTC
T ss_pred             cccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccc
Confidence            8776422    2233455667777777666543210      01                             1223567


Q ss_pred             CEEEccCCcCcccCCccc-cCCCCCCEEECcCCcCcccCC---cchhccccccceeEccCCCCccCCC--cchhcCCCCC
Q 040833          290 ITLNFEENMLEGSIPSSL-GKCQNLISLNLSNNNLSGTIP---TEVIGLSSLSIYLDLSQNQLNGPLP--SNFGILKNLG  363 (503)
Q Consensus       290 ~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~l~~~L~l~~n~l~~~~~--~~~~~~~~L~  363 (503)
                      ++|++++|.+. ..|..+ ..+++|++|++++|.+.+..+   ..+..++.+ ++|++++|.+++..+  ..+..+++|+
T Consensus       313 ~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~l~~L~  390 (549)
T 2z81_A          313 KRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL-QTLVLSQNHLRSMQKTGEILLTLKNLT  390 (549)
T ss_dssp             CEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTC-CEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred             eEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccC-cEEEccCCcccccccchhhhhcCCCCC
Confidence            77777777766 334333 567888888888888876553   235566777 888888888875422  3477788888


Q ss_pred             eEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCc
Q 040833          364 AIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNH  443 (503)
Q Consensus       364 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  443 (503)
                      +|++++|.++ .+|..+..+++|++|++++|.+++ ++..+  .++|++|++++|++++.    ...+++|++|++++|+
T Consensus       391 ~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~  462 (549)
T 2z81_A          391 SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNK  462 (549)
T ss_dssp             EEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSC
T ss_pred             EEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCc
Confidence            8888888887 567777778888888888888773 34333  25788888888888753    2567889999999998


Q ss_pred             CcccCCCCCccCCCCceeccCCCCC---------cccCCCCCCCCCCCC
Q 040833          444 FEGEVPIKGVFSNSSAISIDGNDNL---------CGGISELHLSTCSIK  483 (503)
Q Consensus       444 l~~~~~~~~~~~~l~~l~~~~n~~~---------c~~~~~~~ls~~~~~  483 (503)
                      ++ ..|....+++|+.+++++|...         +..++.+++++|++.
T Consensus       463 l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  510 (549)
T 2z81_A          463 LK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD  510 (549)
T ss_dssp             CS-SCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred             cC-cCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence            88 4454566788888888887432         334567788888753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8.6e-45  Score=374.81  Aligned_cols=406  Identities=20%  Similarity=0.247  Sum_probs=338.9

Q ss_pred             CCccccCCCcccCCCCCCcEEEcccCcCC------C---------------------------CCCcccC----------
Q 040833            1 FNELVGKVPGKLGSLSKLRILAMHRNNLS------G---------------------------EIPSSFG----------   37 (503)
Q Consensus         1 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~------~---------------------------~~~~~~~----------   37 (503)
                      .|.++|.+|.+|+++++|++|+|++|.+.      +                           ..|..+.          
T Consensus        90 ~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~  169 (636)
T 4eco_A           90 GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD  169 (636)
T ss_dssp             TSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHC
T ss_pred             CcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcC
Confidence            37889999999999999999999999762      0                           0011111          


Q ss_pred             ---------CCCCCCEEECC--CCccccCCCccccCCCCCCEEEcccceeeee-----------------CCcccc--CC
Q 040833           38 ---------NLSSLEALSAS--ANQFVGQIPETLSQLKRMLYLLLGVNKLSGE-----------------IPFSIY--NL   87 (503)
Q Consensus        38 ---------~l~~L~~L~l~--~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-----------------~~~~~~--~l   87 (503)
                               ....++.+.+.  .|.+++ +|..|.++++|++|++++|.+++.                 +|..++  ++
T Consensus       170 l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l  248 (636)
T 4eco_A          170 PQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL  248 (636)
T ss_dssp             TTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred             ccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhccc
Confidence                     11122222222  577887 788999999999999999999864                 899988  99


Q ss_pred             CCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCc-ccc-cCCccccCC------CCCCEEecccCcCcccCC--Ccc
Q 040833           88 SSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQ-FTG-PIPASISNA------SNLMRLVIAKNGFSGKVP--SLK  157 (503)
Q Consensus        88 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~~------~~L~~L~l~~n~~~~~~~--~l~  157 (503)
                      ++|++|++++|.+.+.+|..+.. +++|++|++++|. +++ .+|..+..+      ++|++|++++|.+...+.  .+.
T Consensus       249 ~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~  327 (636)
T 4eco_A          249 KDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ  327 (636)
T ss_dssp             TTCCEEEEECCTTCSSCCTTTTT-CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT
T ss_pred             CCCCEEEecCCcCCccChHHHhc-CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhc
Confidence            99999999999998889988775 9999999999998 887 788877765      999999999999995555  489


Q ss_pred             CCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhcccc-CcEEEeeccccccccchhcc
Q 040833          158 ILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTR-LRILIVGNNQLFGNIPSGLR  236 (503)
Q Consensus       158 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~  236 (503)
                      .+++|++|++++|.+.+      .++ .+..+++|++|++++|.+. .+|..+..++ + |++|++++|.+. .+|..+.
T Consensus       328 ~l~~L~~L~L~~N~l~g------~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~l~-~lp~~~~  397 (636)
T 4eco_A          328 KMKKLGMLECLYNQLEG------KLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFT-EQVENLSFAHNKLK-YIPNIFD  397 (636)
T ss_dssp             TCTTCCEEECCSCCCEE------ECC-CCEEEEEESEEECCSSEEE-ECCTTSEEEC-TTCCEEECCSSCCS-SCCSCCC
T ss_pred             cCCCCCEEeCcCCcCcc------chh-hhCCCCCCCEEECCCCccc-cccHhhhhhc-ccCcEEEccCCcCc-ccchhhh
Confidence            99999999999998874      333 6677789999999999998 7788888886 6 999999999998 6677776


Q ss_pred             CCC--CCcEEEccCCcccccCCcccc-------CCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccc
Q 040833          237 NLV--NLEFLHLGGNQFTGRIPGSIV-------DLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSL  307 (503)
Q Consensus       237 ~~~--~L~~L~ls~n~~~~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  307 (503)
                      ...  +|++|++++|.+.+..|..+.       .+++|+.|++++|.+....+..+..+++|++|++++|.+.......+
T Consensus       398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~  477 (636)
T 4eco_A          398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL  477 (636)
T ss_dssp             TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred             hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence            654  899999999999988888887       78899999999999996655667789999999999999995544444


Q ss_pred             cCC-------CCCCEEECcCCcCcccCCcchh--ccccccceeEccCCCCccCCCcchhcCCCCCeEeC------CCCcc
Q 040833          308 GKC-------QNLISLNLSNNNLSGTIPTEVI--GLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDI------SENKL  372 (503)
Q Consensus       308 ~~~-------~~L~~L~l~~n~~~~~~~~~~~--~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l------~~n~l  372 (503)
                      ...       ++|++|++++|.++ .+|..+.  .++.+ +.|++++|.+++ +|..+..+++|++|++      ++|.+
T Consensus       478 ~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L-~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l  554 (636)
T 4eco_A          478 KDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL-VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT  554 (636)
T ss_dssp             EETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC-CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred             ccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc-CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcc
Confidence            433       39999999999999 7888887  88888 999999999996 7888999999999999      56778


Q ss_pred             cccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCcccccc
Q 040833          373 SGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRI  424 (503)
Q Consensus       373 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  424 (503)
                      .+.+|..+..+++|++|++++|.++ .+|..+.  ++|++|++++|++....
T Consensus       555 ~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          555 LREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             cccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcccc
Confidence            8889999999999999999999995 6777665  89999999999987544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=9.3e-43  Score=362.33  Aligned_cols=457  Identities=21%  Similarity=0.189  Sum_probs=319.6

Q ss_pred             CCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccC
Q 040833            7 KVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYN   86 (503)
Q Consensus         7 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~   86 (503)
                      .+|..+.  +++++|+|++|.|+...+.+|.++++|++|++++|.|..+.+++|.++++|++|+|++|+++...+..|.+
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~  122 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG  122 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred             ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence            3454432  47899999999998777788999999999999999998888888999999999999999988766678889


Q ss_pred             CCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccc-cCCccccCCCCCCEEecccCcCcccCCC-ccCCCC---
Q 040833           87 LSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG-PIPASISNASNLMRLVIAKNGFSGKVPS-LKILHK---  161 (503)
Q Consensus        87 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~---  161 (503)
                      +++|++|++++|.+. .++...+..+++|++|++++|.++. ..|..+..+++|++|++++|.+.+..+. +..+.+   
T Consensus       123 L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~  201 (635)
T 4g8a_A          123 LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL  201 (635)
T ss_dssp             CTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred             CCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhh
Confidence            999999999999887 6666555568999999999998865 3567788889999999999888765543 322222   


Q ss_pred             -CcEEEcccccCCCCCCCCcc------------------ccccccCCCCCCEEEC-------------------------
Q 040833          162 -LEWVGISRNHLGNGKKDDLE------------------FVNSLVNASRLELLQI-------------------------  197 (503)
Q Consensus       162 -L~~L~l~~n~l~~~~~~~~~------------------~~~~l~~~~~L~~L~l-------------------------  197 (503)
                       ...++++.|.+.......+.                  ....+..+..++...+                         
T Consensus       202 ~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l  281 (635)
T 4g8a_A          202 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL  281 (635)
T ss_dssp             CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred             hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence             23445555444321111000                  0000111111221111                         


Q ss_pred             -----cCCccc---ccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccC--------------
Q 040833          198 -----SDNNFG---GMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRI--------------  255 (503)
Q Consensus       198 -----~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~--------------  255 (503)
                           ..+...   ......+... ..++.+.+.++.+....  .+.....++.|++.++.+.+..              
T Consensus       282 ~~~~l~~~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~  358 (635)
T 4g8a_A          282 TIEEFRLAYLDYYLDGIIDLFNCL-TNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS  358 (635)
T ss_dssp             EEEEEEEECCCSCEEECTTTTGGG-TTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEES
T ss_pred             hhhhhhhhhhcccccchhhhhhhh-ccccccccccccccccc--ccccchhhhhhhcccccccCcCcccchhhhhccccc
Confidence                 110000   0001111111 24444554444433221  1233334444444444333211              


Q ss_pred             -----CccccCCCCCCEEEccCCccccc--CCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCC
Q 040833          256 -----PGSIVDLYKLQRLALEGNKFWGE--IPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIP  328 (503)
Q Consensus       256 -----~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  328 (503)
                           +.....++.|+.+++++|.+...  .+..+..+.+|+.+++..+.... .+..+..+++|+.+++..+......+
T Consensus       359 n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~  437 (635)
T 4g8a_A          359 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE  437 (635)
T ss_dssp             CCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred             ccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccc
Confidence                 12234567788888888876532  34445567788888888877663 44557788999999999887664444


Q ss_pred             -cchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCccc-ccCCccccCCCCCCEEECCCCcCcccCchhccC
Q 040833          329 -TEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLS-GQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSS  406 (503)
Q Consensus       329 -~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  406 (503)
                       ..+..+..+ +.++++.|.+....+..+..++.++.|++++|.+. ...|..|..+++|++|+|++|.+++..|..|.+
T Consensus       438 ~~~~~~l~~l-~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~  516 (635)
T 4g8a_A          438 FSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS  516 (635)
T ss_dssp             SCTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             cccccccccc-ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcC
Confidence             445666777 89999999999888888999999999999999754 457888999999999999999999888999999


Q ss_pred             CCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC-CCcc-CCCCceeccCCCCCccc
Q 040833          407 LRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KGVF-SNSSAISIDGNDNLCGG  471 (503)
Q Consensus       407 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~-~~l~~l~~~~n~~~c~~  471 (503)
                      +++|++|+|++|++++..+..|..+++|++|++++|++++..|. ...+ ++|+.+++++|||.|+|
T Consensus       517 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            99999999999999988888999999999999999999987763 2333 68999999999999976

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5e-44  Score=374.91  Aligned_cols=433  Identities=20%  Similarity=0.226  Sum_probs=346.6

Q ss_pred             CCCcEEEcccCcCCCCCCcccCCCCCCCEEEC-CCCccccCCCcc-----------------------------------
Q 040833           16 SKLRILAMHRNNLSGEIPSSFGNLSSLEALSA-SANQFVGQIPET-----------------------------------   59 (503)
Q Consensus        16 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l-~~n~i~~~~~~~-----------------------------------   59 (503)
                      ..++.|+|+++.+.+.+|..|+++++|++|++ ++|.+.+..+-.                                   
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            57999999999999999999999999999999 888776542211                                   


Q ss_pred             ----------------ccCCCCCCEEEccc--ceeeeeCCccccCCCCCcEEEccCCCCcc-----------------cC
Q 040833           60 ----------------LSQLKRMLYLLLGV--NKLSGEIPFSIYNLSSLNYICVPVNQLQG-----------------SL  104 (503)
Q Consensus        60 ----------------~~~l~~L~~L~L~~--n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-----------------~~  104 (503)
                                      ......++.+.+..  |++.+ +|..|+++++|++|++++|.+.+                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                            01122334444443  77886 88899999999999999999986                 28


Q ss_pred             chhhh-cCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCc-Ccc-cCCC-c-------cCCCCCcEEEcccccCC
Q 040833          105 PSDLG-FTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNG-FSG-KVPS-L-------KILHKLEWVGISRNHLG  173 (503)
Q Consensus       105 ~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~-l-------~~l~~L~~L~l~~n~l~  173 (503)
                      |..+. ..+++|++|++++|.+.+.+|..+.++++|++|++++|+ +.+ ..|. +       ..+++|++|++++|.+.
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            88874 349999999999999988999999999999999999998 765 3332 3       34569999999999887


Q ss_pred             CCCCCCccccc--cccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCC-CcEEEccCCc
Q 040833          174 NGKKDDLEFVN--SLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN-LEFLHLGGNQ  250 (503)
Q Consensus       174 ~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~ls~n~  250 (503)
                             .++.  .+..+++|++|++++|.+. .+| .+..++ +|+.|++++|.+. .+|..+..+++ |++|++++|.
T Consensus       562 -------~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~-~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          562 -------EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV-KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             -------BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS-EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred             -------ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC-cceEEECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence                   3344  6788899999999999998 667 677775 8999999999998 77778888998 9999999999


Q ss_pred             ccccCCccccCCCC--CCEEEccCCcccccCCccc---c--CCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcC
Q 040833          251 FTGRIPGSIVDLYK--LQRLALEGNKFWGEIPSSI---G--NLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNL  323 (503)
Q Consensus       251 ~~~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~---~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  323 (503)
                      +. .+|..+...+.  |+.|++++|.+.+..|...   .  .+++|+.|++++|.+.......+..+++|++|++++|.+
T Consensus       631 L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L  709 (876)
T 4ecn_A          631 LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM  709 (876)
T ss_dssp             CC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC
T ss_pred             CC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC
Confidence            98 66777766654  9999999999987655322   2  345899999999999954444456889999999999999


Q ss_pred             cccCCcchhccc--------cccceeEccCCCCccCCCcchh--cCCCCCeEeCCCCcccccCCccccCCCCCCEEECCC
Q 040833          324 SGTIPTEVIGLS--------SLSIYLDLSQNQLNGPLPSNFG--ILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNG  393 (503)
Q Consensus       324 ~~~~~~~~~~~~--------~l~~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  393 (503)
                      . .+|..+....        .+ +.|++++|.++ .+|..+.  .+++|+.|++++|.+++ +|..+..+++|+.|+|++
T Consensus       710 ~-~ip~~~~~~~~~~l~nl~~L-~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          710 T-SIPENSLKPKDGNYKNTYLL-TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH  785 (876)
T ss_dssp             S-CCCTTSSSCTTSCCTTGGGC-CEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred             C-ccChHHhccccccccccCCc-cEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence            8 6666554432        66 89999999999 6777776  89999999999999996 788899999999999976


Q ss_pred             ------CcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCC-CccCCCCceeccCCC
Q 040833          394 ------NFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIK-GVFSNSSAISIDGND  466 (503)
Q Consensus       394 ------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~l~~~~n~  466 (503)
                            |.+.+.+|..+..+++|+.|+|++|++. .+|..+.  ++|+.|++++|++....+.. .....+....+.+|+
T Consensus       786 N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~  862 (876)
T 4ecn_A          786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK  862 (876)
T ss_dssp             CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred             CCCcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence                  7788899999999999999999999995 6666654  69999999999998654411 111233445555665


Q ss_pred             CC
Q 040833          467 NL  468 (503)
Q Consensus       467 ~~  468 (503)
                      ..
T Consensus       863 ~~  864 (876)
T 4ecn_A          863 TQ  864 (876)
T ss_dssp             TS
T ss_pred             cc
Confidence            44

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.1e-43  Score=358.56  Aligned_cols=439  Identities=19%  Similarity=0.173  Sum_probs=292.4

Q ss_pred             CCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEE
Q 040833           14 SLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYI   93 (503)
Q Consensus        14 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L   93 (503)
                      .+...++++++++.++ .+|..+.  ++|++|++++|.+.+..+.+|..+++|++|++++|++++..|..|.++++|++|
T Consensus        29 ~~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           29 SNELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             ----CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             ccCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence            3455588899988888 4676654  788999999998887777888889999999999998887778888889999999


Q ss_pred             EccCCCCcccCchhhhcCCCCCCEEEccCCcccc-cCCccccCCCCCCEEecccCcCcccCCCccCCCCC--cEEEcccc
Q 040833           94 CVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG-PIPASISNASNLMRLVIAKNGFSGKVPSLKILHKL--EWVGISRN  170 (503)
Q Consensus        94 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L--~~L~l~~n  170 (503)
                      ++++|.+. .+|..   .+++|++|++++|.+++ ..|..+.++++|++|++++|.+..  ..+..+++|  ++|++++|
T Consensus       106 ~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          106 DVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             ECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEES
T ss_pred             ECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecc
Confidence            99998887 77766   48889999999988885 345788888999999998888765  234555555  88888888


Q ss_pred             cC--CCCCCCCccc--------------------cccccCCCCCCEEECcCCccc----ccCchhHhhccccCcEEEeec
Q 040833          171 HL--GNGKKDDLEF--------------------VNSLVNASRLELLQISDNNFG----GMLPEAVGNLSTRLRILIVGN  224 (503)
Q Consensus       171 ~l--~~~~~~~~~~--------------------~~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~L~~L~l~~  224 (503)
                      .+  .......+..                    ...+..+++|+.+++++|...    ......+...+ .++.+.+.+
T Consensus       180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~-~L~~L~L~~  258 (562)
T 3a79_B          180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP-TLLNVTLQH  258 (562)
T ss_dssp             SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS-SCEEEEEEE
T ss_pred             cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccC-cceEEEecC
Confidence            77  4322211111                    012233455666666665311    01112233333 566666665


Q ss_pred             ccccccc----chhccCCCCCcEEEccCCcccccCCccc-----cCCCCCCEEEccCCcccccCC-cccc---CCCCCCE
Q 040833          225 NQLFGNI----PSGLRNLVNLEFLHLGGNQFTGRIPGSI-----VDLYKLQRLALEGNKFWGEIP-SSIG---NLTLLIT  291 (503)
Q Consensus       225 ~~~~~~~----~~~~~~~~~L~~L~ls~n~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~~-~~~~---~~~~L~~  291 (503)
                      +.+.+..    +.. ...++|++|++++|.+.+..|..+     ..++.|+.+++..+.+  ..| ..+.   ..++|++
T Consensus       259 ~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~  335 (562)
T 3a79_B          259 IETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKM  335 (562)
T ss_dssp             EEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSE
T ss_pred             CcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceE
Confidence            5544311    111 123478888888888776666655     4445555555555544  122 1111   1256777


Q ss_pred             EEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCC--CcchhcCCCCCeEeCCC
Q 040833          292 LNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPL--PSNFGILKNLGAIDISE  369 (503)
Q Consensus       292 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~  369 (503)
                      |++++|.+....  ....+++|++|++++|.+.+..|..+..++++ +.|++++|.+++..  +..+..+++|++|++++
T Consensus       336 L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~  412 (562)
T 3a79_B          336 LSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL-QTLILQRNGLKNFFKVALMTKNMSSLETLDVSL  412 (562)
T ss_dssp             EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSC-CEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred             EEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCC-CEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence            777777765322  12567778888888887776677777777777 77888888777532  34566777888888888


Q ss_pred             CcccccCC-ccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccC
Q 040833          370 NKLSGQIP-SSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEV  448 (503)
Q Consensus       370 n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  448 (503)
                      |.+++.+| ..+..+++|++|++++|.+++..+..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++..+
T Consensus       413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~  489 (562)
T 3a79_B          413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVP  489 (562)
T ss_dssp             SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCC
T ss_pred             CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCC
Confidence            87776333 3567777888888888877755544433  57888888888777 44544457778888888888877544


Q ss_pred             CC-CCccCCCCceeccCCCCCccc
Q 040833          449 PI-KGVFSNSSAISIDGNDNLCGG  471 (503)
Q Consensus       449 ~~-~~~~~~l~~l~~~~n~~~c~~  471 (503)
                      +. ...+++|+.+++++||+.|+|
T Consensus       490 ~~~~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          490 DGVFDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             TTSTTTCTTCCCEECCSCCBCCCH
T ss_pred             HHHHhcCCCCCEEEecCCCcCCCc
Confidence            43 455677777888888887765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=7.2e-43  Score=366.13  Aligned_cols=427  Identities=18%  Similarity=0.188  Sum_probs=346.2

Q ss_pred             CCccccCCCcccCCCCCCcEEEc-ccCcCCCCCCcc--------------------------------------------
Q 040833            1 FNELVGKVPGKLGSLSKLRILAM-HRNNLSGEIPSS--------------------------------------------   35 (503)
Q Consensus         1 ~~~~~~~~~~~~~~~~~L~~L~l-~~n~i~~~~~~~--------------------------------------------   35 (503)
                      .|.++|.+|.+|+++++|++|+| ++|.+.+..|-.                                            
T Consensus       332 ~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~  411 (876)
T 4ecn_A          332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN  411 (876)
T ss_dssp             TTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred             cCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence            47899999999999999999999 888665431111                                            


Q ss_pred             -------cCCCCCCCEEECC--CCccccCCCccccCCCCCCEEEcccceeee-----------------eCCcccc--CC
Q 040833           36 -------FGNLSSLEALSAS--ANQFVGQIPETLSQLKRMLYLLLGVNKLSG-----------------EIPFSIY--NL   87 (503)
Q Consensus        36 -------~~~l~~L~~L~l~--~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-----------------~~~~~~~--~l   87 (503)
                             ......++.+.+.  .|.+.+ +|..|.++++|++|+|++|.+++                 .+|..++  ++
T Consensus       412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L  490 (876)
T 4ecn_A          412 PEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL  490 (876)
T ss_dssp             TTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred             ccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC
Confidence                   0112233444443  377887 78899999999999999999996                 3888877  99


Q ss_pred             CCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCc-ccc-cCCccccC-------CCCCCEEecccCcCcccCC--Cc
Q 040833           88 SSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQ-FTG-PIPASISN-------ASNLMRLVIAKNGFSGKVP--SL  156 (503)
Q Consensus        88 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~-------~~~L~~L~l~~n~~~~~~~--~l  156 (503)
                      ++|++|++++|.+.+.+|..+.. +++|++|++++|+ +++ .+|..+..       +++|++|++++|.+...+.  .+
T Consensus       491 ~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l  569 (876)
T 4ecn_A          491 KDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL  569 (876)
T ss_dssp             TTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred             CCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence            99999999999988899988776 9999999999998 887 67765554       4599999999999995555  48


Q ss_pred             cCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhcc
Q 040833          157 KILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLR  236 (503)
Q Consensus       157 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  236 (503)
                      ..+++|+.|++++|.+..       ++ .+..+++|+.|++++|.+. .+|..+..++.+|++|++++|.+. .+|..+.
T Consensus       570 ~~L~~L~~L~Ls~N~l~~-------lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~  639 (876)
T 4ecn_A          570 QKMVKLGLLDCVHNKVRH-------LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN  639 (876)
T ss_dssp             TTCTTCCEEECTTSCCCB-------CC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC
T ss_pred             hcCCCCCEEECCCCCccc-------ch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhh
Confidence            999999999999998872       22 6778899999999999998 778888888623999999999998 6677776


Q ss_pred             CCC--CCcEEEccCCcccccCCccc---c--CCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccC
Q 040833          237 NLV--NLEFLHLGGNQFTGRIPGSI---V--DLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGK  309 (503)
Q Consensus       237 ~~~--~L~~L~ls~n~~~~~~~~~~---~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  309 (503)
                      ..+  +|+.|++++|.+.+..|...   .  ..++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..
T Consensus       640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~  719 (876)
T 4ecn_A          640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP  719 (876)
T ss_dssp             TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC
T ss_pred             ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcc
Confidence            665  49999999999987554322   2  3458999999999999544445668999999999999998444444432


Q ss_pred             -------CCCCCEEECcCCcCcccCCcchh--ccccccceeEccCCCCccCCCcchhcCCCCCeEeCCC------Ccccc
Q 040833          310 -------CQNLISLNLSNNNLSGTIPTEVI--GLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISE------NKLSG  374 (503)
Q Consensus       310 -------~~~L~~L~l~~n~~~~~~~~~~~--~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~------n~l~~  374 (503)
                             +++|++|++++|++. .+|..+.  .++++ +.|++++|.+.+ +|..+..+++|+.|++++      |.+.+
T Consensus       720 ~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L-~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~  796 (876)
T 4ecn_A          720 KDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL-SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILR  796 (876)
T ss_dssp             TTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC-CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred             ccccccccCCccEEECCCCCCc-cchHHhhhccCCCc-CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccc
Confidence                   349999999999998 7888887  88888 999999999996 688888999999999976      77888


Q ss_pred             cCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCc
Q 040833          375 QIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE  445 (503)
Q Consensus       375 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  445 (503)
                      .+|..+..+++|+.|+|++|.+ +.+|..+.  ++|+.|+|++|++....+..+.....+..+.+.+|++.
T Consensus       797 ~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          797 QWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             CCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             cChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence            8999999999999999999999 47777765  69999999999998777666655555666777777655

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.2e-42  Score=351.96  Aligned_cols=431  Identities=19%  Similarity=0.236  Sum_probs=334.5

Q ss_pred             CccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCC
Q 040833            2 NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIP   81 (503)
Q Consensus         2 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~   81 (503)
                      |+++. +|..+.  +++++|++++|.+++..++.|.++++|++|++++|.+.+..|++|.++++|++|++++|+++ .+|
T Consensus        41 ~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp  116 (562)
T 3a79_B           41 RNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NIS  116 (562)
T ss_dssp             SCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EEC
T ss_pred             CCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccC
Confidence            56665 666554  89999999999999888889999999999999999999988999999999999999999998 566


Q ss_pred             ccccCCCCCcEEEccCCCCcc-cCchhhhcCCCCCCEEEccCCcccccCCccccCCCCC--CEEecccCcC--cccCCC-
Q 040833           82 FSIYNLSSLNYICVPVNQLQG-SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNL--MRLVIAKNGF--SGKVPS-  155 (503)
Q Consensus        82 ~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L--~~L~l~~n~~--~~~~~~-  155 (503)
                      ..  .+++|++|++++|.+.+ .+|..+.. +++|++|++++|.++..   .+..+++|  ++|++++|.+  .+..+. 
T Consensus       117 ~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~-l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~  190 (562)
T 3a79_B          117 CC--PMASLRHLDLSFNDFDVLPVCKEFGN-LTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETES  190 (562)
T ss_dssp             SC--CCTTCSEEECCSSCCSBCCCCGGGGG-CTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCE
T ss_pred             cc--ccccCCEEECCCCCccccCchHhhcc-cCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCccc
Confidence            55  89999999999999984 23456654 99999999999998853   45555555  9999999988  443332 


Q ss_pred             cc--------------------------CCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchh
Q 040833          156 LK--------------------------ILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEA  209 (503)
Q Consensus       156 l~--------------------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  209 (503)
                      +.                          .+++|+.+++++|......  .......+...++|+.++++++.+.+.....
T Consensus       191 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~  268 (562)
T 3a79_B          191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR--LMTFLSELTRGPTLLNVTLQHIETTWKCSVK  268 (562)
T ss_dssp             EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHH--HHHHHHHHHSCSSCEEEEEEEEEECHHHHHH
T ss_pred             ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccch--HHHHHHHHhccCcceEEEecCCcCcHHHHHH
Confidence            22                          3456777777766421100  0022345667788999999888765432111


Q ss_pred             H---hhccccCcEEEeeccccccccchhc-----cCCCCCcEEEccCCcccccCC-cccc---CCCCCCEEEccCCcccc
Q 040833          210 V---GNLSTRLRILIVGNNQLFGNIPSGL-----RNLVNLEFLHLGGNQFTGRIP-GSIV---DLYKLQRLALEGNKFWG  277 (503)
Q Consensus       210 ~---~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~ls~n~~~~~~~-~~~~---~~~~L~~L~l~~n~~~~  277 (503)
                      +   ... +++++|++++|.+.+..|..+     ..++.|+.++++.+.+  ..| ..+.   ...+|+.|++++|.+..
T Consensus       269 ~~~~~~~-~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~  345 (562)
T 3a79_B          269 LFQFFWP-RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIH  345 (562)
T ss_dssp             HHHHHTT-SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred             HHHhhhc-ccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccc
Confidence            1   112 389999999999987777766     5555555555555554  222 1111   23579999999998763


Q ss_pred             cCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcc--cCCcchhccccccceeEccCCCCccCCC-c
Q 040833          278 EIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSG--TIPTEVIGLSSLSIYLDLSQNQLNGPLP-S  354 (503)
Q Consensus       278 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~l~~~L~l~~n~l~~~~~-~  354 (503)
                      ..  ....+++|++|++++|.+.+..+..+..+++|++|++++|.+.+  ..|..+..++.+ ++|++++|.+++..+ .
T Consensus       346 ~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~  422 (562)
T 3a79_B          346 MV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL-ETLDVSLNSLNSHAYDR  422 (562)
T ss_dssp             CC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-CEEECTTSCCBSCCSSC
T ss_pred             cc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC-CEEECCCCcCCCccChh
Confidence            32  22678999999999999998888899999999999999999985  234567888888 999999999997344 4


Q ss_pred             chhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCC
Q 040833          355 NFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFL  434 (503)
Q Consensus       355 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  434 (503)
                      .+..+++|++|++++|.+++..+..+.  ++|++|++++|.++ .+|..+..+++|++|++++|+++...+..+..+++|
T Consensus       423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L  499 (562)
T 3a79_B          423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSL  499 (562)
T ss_dssp             CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTC
T ss_pred             hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCC
Confidence            588899999999999999877666554  79999999999998 567666699999999999999995555559999999


Q ss_pred             CeeecCCCcCcccCCCCCc
Q 040833          435 QNLNLSFNHFEGEVPIKGV  453 (503)
Q Consensus       435 ~~L~l~~n~l~~~~~~~~~  453 (503)
                      +.|++++|++.|.++..+.
T Consensus       500 ~~L~l~~N~~~c~c~~~~~  518 (562)
T 3a79_B          500 QYIWLHDNPWDCTCPGIRY  518 (562)
T ss_dssp             CCEECCSCCBCCCHHHHHH
T ss_pred             CEEEecCCCcCCCcchHHH
Confidence            9999999999998875443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.1e-40  Score=332.32  Aligned_cols=392  Identities=19%  Similarity=0.210  Sum_probs=261.3

Q ss_pred             cEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceee-eeCCccccCCCCCcEEEccC
Q 040833           19 RILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLS-GEIPFSIYNLSSLNYICVPV   97 (503)
Q Consensus        19 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~   97 (503)
                      +.++.+++.++ ..|. +.  ++|++|++++|.+.+..|..|.++++|++|++++|.+. ...+..|.++++|++|++++
T Consensus        13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            45677777777 5555 33  67888888888888777778888888888888888775 34456677888888888888


Q ss_pred             CCCcccCchhhhcCCCCCCEEEccCCcccccCCcc--ccCCCCCCEEecccCcCcccCCC--ccCCCCCcEEEcccccCC
Q 040833           98 NQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPAS--ISNASNLMRLVIAKNGFSGKVPS--LKILHKLEWVGISRNHLG  173 (503)
Q Consensus        98 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~--l~~l~~L~~L~l~~n~l~  173 (503)
                      |.+.+..|..+. .+++|++|++++|.+++..+..  +..+++|++|++++|.+.+..+.  +..+++|++|++++|.+.
T Consensus        89 n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           89 NQFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             CTTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            877744455554 3778888888888776533333  66777777777777777665443  556666666666666555


Q ss_pred             CCCCCCccccccccCC--CCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcc
Q 040833          174 NGKKDDLEFVNSLVNA--SRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQF  251 (503)
Q Consensus       174 ~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~  251 (503)
                      .....      .+..+  .+++.+++++|.+.+..+..+..                 .....+..+++|++|++++|.+
T Consensus       168 ~~~~~------~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~-----------------~~~~~~~~~~~L~~L~Ls~n~l  224 (455)
T 3v47_A          168 SICEE------DLLNFQGKHFTLLRLSSITLQDMNEYWLGW-----------------EKCGNPFKNTSITTLDLSGNGF  224 (455)
T ss_dssp             CCCTT------TSGGGTTCEEEEEECTTCBCTTCSTTCTTH-----------------HHHCCTTTTCEEEEEECTTSCC
T ss_pred             ccChh------hhhccccccccccccccCcccccchhhccc-----------------cccccccccceeeeEecCCCcc
Confidence            42211      11111  34455555555444322211110                 0001122345566666666665


Q ss_pred             cccCCccccCC---CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCcccc--CCCCCCEEECcCCcCccc
Q 040833          252 TGRIPGSIVDL---YKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLG--KCQNLISLNLSNNNLSGT  326 (503)
Q Consensus       252 ~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~  326 (503)
                      .+..+..+...   .+++.|++++|...+....              .+.+.......+.  ..++|++|++++|.+.+.
T Consensus       225 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  290 (455)
T 3v47_A          225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL  290 (455)
T ss_dssp             CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred             cccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCcccccc
Confidence            54444433222   5566666666654322110              0111111111122  235677777777777766


Q ss_pred             CCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccC
Q 040833          327 IPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSS  406 (503)
Q Consensus       327 ~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  406 (503)
                      .+..+..++.+ ++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|.+
T Consensus       291 ~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  369 (455)
T 3v47_A          291 LKSVFSHFTDL-EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG  369 (455)
T ss_dssp             CTTTTTTCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             chhhcccCCCC-CEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence            66677777777 77777777777677777888899999999999998888888999999999999999999888889999


Q ss_pred             CCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCc
Q 040833          407 LRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGV  453 (503)
Q Consensus       407 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  453 (503)
                      +++|++|++++|++++..+..+..+++|++|++++|++++.+|....
T Consensus       370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  416 (455)
T 3v47_A          370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  416 (455)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred             cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchH
Confidence            99999999999999987777889999999999999999998885433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.4e-39  Score=322.57  Aligned_cols=373  Identities=18%  Similarity=0.181  Sum_probs=267.8

Q ss_pred             CCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccc-cCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEE
Q 040833           16 SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFV-GQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYIC   94 (503)
Q Consensus        16 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~   94 (503)
                      ++|++|++++|.+++..|..|.++++|++|++++|.+. ...+..|..+++|++|++++|.+....|..|.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            78999999999999888999999999999999999986 44577899999999999999999988899999999999999


Q ss_pred             ccCCCCcccCchh-hhcCCCCCCEEEccCCcccccCCcc-ccCCCCCCEEecccCcCcccCCC-ccCC--CCCcEEEccc
Q 040833           95 VPVNQLQGSLPSD-LGFTLPNLEVLNLCRNQFTGPIPAS-ISNASNLMRLVIAKNGFSGKVPS-LKIL--HKLEWVGISR  169 (503)
Q Consensus        95 l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~-l~~l--~~L~~L~l~~  169 (503)
                      +++|.+.+..+.. .+..+++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+. +..+  .+|+.+++++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            9999998554543 3445999999999999999777776 88999999999999999877665 5554  6899999999


Q ss_pred             ccCCCCCCCCcc--ccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEcc
Q 040833          170 NHLGNGKKDDLE--FVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLG  247 (503)
Q Consensus       170 n~l~~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls  247 (503)
                      |.+.......+.  ....+..+++|++|++++|.+.+..+..+....                      ..++|+.|+++
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~----------------------~~~~L~~L~l~  247 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI----------------------AGTKIQSLILS  247 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT----------------------TTCCEEEEECT
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc----------------------cccceeeEeec
Confidence            998764322111  112233446677777777776655555544331                      11344444444


Q ss_pred             CCcccccCCccccCCCCCCEEEccCCcccccCCcccc--CCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcc
Q 040833          248 GNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIG--NLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSG  325 (503)
Q Consensus       248 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  325 (503)
                      +|...+...              ..+.+.+..+..+.  ..++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus       248 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  313 (455)
T 3v47_A          248 NSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK  313 (455)
T ss_dssp             TCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred             ccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence            443331100              00001101111111  12456666666666655555555666666666666666665


Q ss_pred             cCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhcc
Q 040833          326 TIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLS  405 (503)
Q Consensus       326 ~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  405 (503)
                      ..+..+..++.+ ++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..|.
T Consensus       314 ~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  392 (455)
T 3v47_A          314 IDDNAFWGLTHL-LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD  392 (455)
T ss_dssp             ECTTTTTTCTTC-CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             cChhHhcCcccC-CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc
Confidence            555555556665 6666666666655566677788888888888888877788888888888888888888876667778


Q ss_pred             CCCCCCEEeCCCCccccccC
Q 040833          406 SLRGIENLDLSRNNLSGRIP  425 (503)
Q Consensus       406 ~l~~L~~L~L~~n~l~~~~~  425 (503)
                      .+++|++|++++|+++...|
T Consensus       393 ~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          393 RLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TCTTCCEEECCSSCBCCCTT
T ss_pred             cCCcccEEEccCCCcccCCC
Confidence            88888888888888875544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.3e-39  Score=334.69  Aligned_cols=448  Identities=24%  Similarity=0.241  Sum_probs=343.4

Q ss_pred             CCccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeC
Q 040833            1 FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEI   80 (503)
Q Consensus         1 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~   80 (503)
                      +|.|++..+.+|+++++|++|+|++|.|++..+++|.++++|++|++++|++....+++|.++++|++|++++|++++..
T Consensus        61 ~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~  140 (635)
T 4g8a_A           61 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE  140 (635)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCST
T ss_pred             CCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCC
Confidence            58899999999999999999999999999888889999999999999999999888889999999999999999999777


Q ss_pred             CccccCCCCCcEEEccCCCCccc-CchhhhcCCCCCCEEEccCCcccccCCccccCCCCC----CEEecccCcCcccCCC
Q 040833           81 PFSIYNLSSLNYICVPVNQLQGS-LPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNL----MRLVIAKNGFSGKVPS  155 (503)
Q Consensus        81 ~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L----~~L~l~~n~~~~~~~~  155 (503)
                      +..|+++++|++|++++|.+.+. .|..+. .+++|++|++++|.+++..+..+..+.++    ..++++.|.+....+.
T Consensus       141 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~  219 (635)
T 4g8a_A          141 NFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG  219 (635)
T ss_dssp             TCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred             hhhhhcCcccCeeccccCccccCCCchhhc-cchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcc
Confidence            77899999999999999998743 455555 49999999999999997777777654433    3566777766544433


Q ss_pred             ccCCCCCcEEEcccccCC-------------------------C------CCCCCc---------------------ccc
Q 040833          156 LKILHKLEWVGISRNHLG-------------------------N------GKKDDL---------------------EFV  183 (503)
Q Consensus       156 l~~l~~L~~L~l~~n~l~-------------------------~------~~~~~~---------------------~~~  183 (503)
                      ......++.+++.+|...                         .      .....+                     ...
T Consensus       220 ~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~  299 (635)
T 4g8a_A          220 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGII  299 (635)
T ss_dssp             TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECT
T ss_pred             cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchh
Confidence            222222233332222100                         0      000000                     001


Q ss_pred             ccccCCCCCCEEECc----------------------CCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCC
Q 040833          184 NSLVNASRLELLQIS----------------------DNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNL  241 (503)
Q Consensus       184 ~~l~~~~~L~~L~l~----------------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  241 (503)
                      ..+....+++.+.+.                      ++.+.......   . ..++.+.+..+.....  .....+++|
T Consensus       300 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---l-~~L~~l~l~~n~~~~~--~~~~~l~~L  373 (635)
T 4g8a_A          300 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK---L-KSLKRLTFTSNKGGNA--FSEVDLPSL  373 (635)
T ss_dssp             TTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCB---C-TTCCEEEEESCCSCCB--CCCCBCTTC
T ss_pred             hhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCccc---c-hhhhhcccccccCCCC--ccccccccc
Confidence            112223344444444                      44433222111   1 2445555555443321  123467899


Q ss_pred             cEEEccCCcccc--cCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccC-CccccCCCCCCEEEC
Q 040833          242 EFLHLGGNQFTG--RIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSI-PSSLGKCQNLISLNL  318 (503)
Q Consensus       242 ~~L~ls~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l  318 (503)
                      +.+++++|.+..  ..+..+.....|+.+++..+.... .+..+..+++|+.+++..+...... ...+..+++++.+++
T Consensus       374 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l  452 (635)
T 4g8a_A          374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  452 (635)
T ss_dssp             CEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred             ccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccc
Confidence            999999998753  455667788899999999998874 4556788999999999988876443 456788999999999


Q ss_pred             cCCcCcccCCcchhccccccceeEccCCCCc-cCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCc
Q 040833          319 SNNNLSGTIPTEVIGLSSLSIYLDLSQNQLN-GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ  397 (503)
Q Consensus       319 ~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  397 (503)
                      +.|.+....+..+..++.+ +.+++++|.+. ...+..|..+++|++|++++|++++..|..|.++++|++|+|++|+++
T Consensus       453 s~n~l~~~~~~~~~~~~~L-~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~  531 (635)
T 4g8a_A          453 SHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF  531 (635)
T ss_dssp             TTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             cccccccccccccccchhh-hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC
Confidence            9999997778888888888 99999999754 456788999999999999999999888999999999999999999999


Q ss_pred             ccCchhccCCCCCCEEeCCCCccccccCccCcCC-CCCCeeecCCCcCcccCCCCCccCCC
Q 040833          398 GNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENF-PFLQNLNLSFNHFEGEVPIKGVFSNS  457 (503)
Q Consensus       398 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~l  457 (503)
                      +..+..|.++++|++|+|++|++++..|..+..+ ++|++|++++|++.|.+...++...+
T Consensus       532 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl  592 (635)
T 4g8a_A          532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI  592 (635)
T ss_dssp             BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred             CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHH
Confidence            8889999999999999999999999999999888 68999999999999998755443333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.5e-38  Score=313.48  Aligned_cols=347  Identities=18%  Similarity=0.193  Sum_probs=255.9

Q ss_pred             cEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEEEccc
Q 040833           91 NYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISR  169 (503)
Q Consensus        91 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~  169 (503)
                      +.++.+++.+. .+|..+   .++++.|++++|.+++..+..|..+++|++|++++|.+....+. +..+++|++|++++
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            56788887776 777765   35788999999888877777888888888888888887766544 66666666666666


Q ss_pred             ccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCC
Q 040833          170 NHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGN  249 (503)
Q Consensus       170 n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n  249 (503)
                      |.+....      ...+..+++                         |++|++++|.+....+..+..+++|++|++++|
T Consensus        90 n~l~~~~------~~~~~~l~~-------------------------L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n  138 (477)
T 2id5_A           90 NRLKLIP------LGVFTGLSN-------------------------LTKLDISENKIVILLDYMFQDLYNLKSLEVGDN  138 (477)
T ss_dssp             SCCCSCC------TTSSTTCTT-------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred             CcCCccC------cccccCCCC-------------------------CCEEECCCCccccCChhHccccccCCEEECCCC
Confidence            6554311      112333444                         455555555444444455566666666666666


Q ss_pred             cccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCc
Q 040833          250 QFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPT  329 (503)
Q Consensus       250 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  329 (503)
                      .+.+..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|++|++++|...+..+.
T Consensus       139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  218 (477)
T 2id5_A          139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP  218 (477)
T ss_dssp             TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred             ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence            66655566666666777777777766655555566777777777777777666666677777777777777766656665


Q ss_pred             chhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCC
Q 040833          330 EVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRG  409 (503)
Q Consensus       330 ~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  409 (503)
                      ......++ +.|++++|.++...+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..|.++++
T Consensus       219 ~~~~~~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  297 (477)
T 2id5_A          219 NCLYGLNL-TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY  297 (477)
T ss_dssp             TTTTTCCC-SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred             ccccCccc-cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence            55555566 78888888887555567888899999999999998877888889999999999999999888889999999


Q ss_pred             CCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCcccCC
Q 040833          410 IENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGIS  473 (503)
Q Consensus       410 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~~~  473 (503)
                      |++|+|++|+++...+..|..+++|++|++++|++.+.++..+.+.....+.+.++...|.++.
T Consensus       298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred             CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence            9999999999997777788899999999999999998887666666666677778888886653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.3e-37  Score=307.39  Aligned_cols=393  Identities=23%  Similarity=0.317  Sum_probs=244.6

Q ss_pred             CCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCC-------------CEEEcccceeeeeC
Q 040833           14 SLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRM-------------LYLLLGVNKLSGEI   80 (503)
Q Consensus        14 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L-------------~~L~L~~n~i~~~~   80 (503)
                      ..++|++|++++|.+ +.+|++|+++++|++|++++|.+.+..|..++.+++|             ++|++++|.++ .+
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~l   86 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SL   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CC
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cC
Confidence            458899999999999 5889899999999999999999988889888888764             88889888887 34


Q ss_pred             CccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCC
Q 040833           81 PFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILH  160 (503)
Q Consensus        81 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~  160 (503)
                      |..   .++|++|++++|.+. .+|..    +++|++|++++|.+++ ++..   .++|++|++++|.+.+ .+.++.++
T Consensus        87 p~~---~~~L~~L~l~~n~l~-~lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp~~~~l~  153 (454)
T 1jl5_A           87 PEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LPELQNSS  153 (454)
T ss_dssp             CSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CCCCTTCT
T ss_pred             CCC---cCCCCEEEccCCcCC-ccccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-CcccCCCC
Confidence            432   368888999988887 46642    5788999998888873 3321   2688889998888876 44688888


Q ss_pred             CCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCC
Q 040833          161 KLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN  240 (503)
Q Consensus       161 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  240 (503)
                      +|++|++++|.+.....       .   ..+|++|++++|.+.+ +| .+..++ +|++|++++|.+.+ .+..   .++
T Consensus       154 ~L~~L~l~~N~l~~lp~-------~---~~~L~~L~L~~n~l~~-l~-~~~~l~-~L~~L~l~~N~l~~-l~~~---~~~  216 (454)
T 1jl5_A          154 FLKIIDVDNNSLKKLPD-------L---PPSLEFIAAGNNQLEE-LP-ELQNLP-FLTAIYADNNSLKK-LPDL---PLS  216 (454)
T ss_dssp             TCCEEECCSSCCSCCCC-------C---CTTCCEEECCSSCCSS-CC-CCTTCT-TCCEEECCSSCCSS-CCCC---CTT
T ss_pred             CCCEEECCCCcCcccCC-------C---cccccEEECcCCcCCc-Cc-cccCCC-CCCEEECCCCcCCc-CCCC---cCc
Confidence            88999988888764221       1   2478888888888875 44 466665 78888888888774 3322   258


Q ss_pred             CcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcC
Q 040833          241 LEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSN  320 (503)
Q Consensus       241 L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  320 (503)
                      |++|++++|.+. .+| .+..+++|++|++++|.+.+ .|.   .+++|++|++++|.+.+ .+..   +++|++|++++
T Consensus       217 L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~  286 (454)
T 1jl5_A          217 LESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSE  286 (454)
T ss_dssp             CCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred             ccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcC
Confidence            888888888887 455 47888888888888888874 333   24788888888888875 3332   37888888888


Q ss_pred             CcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccC
Q 040833          321 NNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI  400 (503)
Q Consensus       321 n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~  400 (503)
                      |.+.+ ++..   .+.+ +.|++++|.+++. +.   ..++|++|++++|.+++ +|..   +++|++|++++|.++ .+
T Consensus       287 N~l~~-l~~~---~~~L-~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~l  352 (454)
T 1jl5_A          287 NIFSG-LSEL---PPNL-YYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EV  352 (454)
T ss_dssp             SCCSE-ESCC---CTTC-CEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CC
T ss_pred             CccCc-ccCc---CCcC-CEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cc
Confidence            88874 2211   1344 7888888888742 11   12578888888888874 4443   478888888888887 45


Q ss_pred             chhccCCCCCCEEeCCCCcccc--ccCccCcCC-------------CCCCeeecCCCcCcccCCCCCccCCCCceeccCC
Q 040833          401 PSSLSSLRGIENLDLSRNNLSG--RIPKYLENF-------------PFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGN  465 (503)
Q Consensus       401 ~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~-------------~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n  465 (503)
                      |.   .+++|++|++++|++++  ..|..+..+             ++|++|++++|++++...   ...+++.+.+.+|
T Consensus       353 p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~---iP~sl~~L~~~~~  426 (454)
T 1jl5_A          353 PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD---IPESVEDLRMNSE  426 (454)
T ss_dssp             CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------------------
T ss_pred             cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcccc---chhhHhheeCcCc
Confidence            54   46888888888888886  566666555             678888888888775211   1245666666555


Q ss_pred             CCC
Q 040833          466 DNL  468 (503)
Q Consensus       466 ~~~  468 (503)
                      ...
T Consensus       427 ~~~  429 (454)
T 1jl5_A          427 RVV  429 (454)
T ss_dssp             ---
T ss_pred             ccC
Confidence            433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.2e-36  Score=300.28  Aligned_cols=345  Identities=29%  Similarity=0.414  Sum_probs=210.2

Q ss_pred             CCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEE
Q 040833           15 LSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYIC   94 (503)
Q Consensus        15 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~   94 (503)
                      ++++++|+++++.++ ..| .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+....+  +.++++|++|+
T Consensus        45 l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  118 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT  118 (466)
T ss_dssp             HHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             hccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence            456677777766666 333 25666677777777776664433  6666677777777666663332  66666666666


Q ss_pred             ccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCC
Q 040833           95 VPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGN  174 (503)
Q Consensus        95 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~  174 (503)
                      +++|.+. .++. + ..+++|++|++++|.+++ .+ .+..+++|++|++++ .+.. .+.+..+++             
T Consensus       119 L~~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~-~~~~~~l~~-------------  178 (466)
T 1o6v_A          119 LFNNQIT-DIDP-L-KNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTD-LKPLANLTT-------------  178 (466)
T ss_dssp             CCSSCCC-CCGG-G-TTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCC-CGGGTTCTT-------------
T ss_pred             CCCCCCC-CChH-H-cCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccC-chhhccCCC-------------
Confidence            6666665 3333 2 336666666666666652 22 355566666665542 2221 111444444             


Q ss_pred             CCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCccccc
Q 040833          175 GKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGR  254 (503)
Q Consensus       175 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~  254 (503)
                                       |++|++++|.+.+.  ..+..++ +|++|++++|.+.+..+  +..+++|++|++++|.+++.
T Consensus       179 -----------------L~~L~l~~n~l~~~--~~l~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  236 (466)
T 1o6v_A          179 -----------------LERLDISSNKVSDI--SVLAKLT-NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI  236 (466)
T ss_dssp             -----------------CCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             -----------------CCEEECcCCcCCCC--hhhccCC-CCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc
Confidence                             44555544444322  1233333 55555555555543322  44455666666666665532


Q ss_pred             CCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhcc
Q 040833          255 IPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGL  334 (503)
Q Consensus       255 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  334 (503)
                        ..+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+
T Consensus       237 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l  308 (466)
T 1o6v_A          237 --GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNL  308 (466)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGC
T ss_pred             --hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCC
Confidence              245566666666666666654332  5666677777777776664333  5666777777777777664322  5566


Q ss_pred             ccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEe
Q 040833          335 SSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLD  414 (503)
Q Consensus       335 ~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  414 (503)
                      +++ +.|++++|.+.+..+  +..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..|  +..+++|+.|+
T Consensus       309 ~~L-~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  381 (466)
T 1o6v_A          309 KNL-TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG  381 (466)
T ss_dssp             TTC-SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEE
T ss_pred             CCC-CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEe
Confidence            666 777777777765543  66778888888888888754  467788888888888888886655  77888888888


Q ss_pred             CCCCcccc
Q 040833          415 LSRNNLSG  422 (503)
Q Consensus       415 L~~n~l~~  422 (503)
                      +++|++++
T Consensus       382 l~~n~~~~  389 (466)
T 1o6v_A          382 LNDQAWTN  389 (466)
T ss_dssp             CCCEEEEC
T ss_pred             ccCCcccC
Confidence            88888875

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=9.1e-37  Score=301.39  Aligned_cols=382  Identities=25%  Similarity=0.319  Sum_probs=271.5

Q ss_pred             CccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCC-------------CEEECCCCccccCCCccccCCCCCCE
Q 040833            2 NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSL-------------EALSASANQFVGQIPETLSQLKRMLY   68 (503)
Q Consensus         2 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L-------------~~L~l~~n~i~~~~~~~~~~l~~L~~   68 (503)
                      |.+ +.+|.+|+++++|++|++++|.+.+..|..++++++|             ++|++++|.+++ +|..   .++|++
T Consensus        21 n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~   95 (454)
T 1jl5_A           21 SNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLES   95 (454)
T ss_dssp             --------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSE
T ss_pred             Cch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCE
Confidence            667 8999999999999999999999998999999998865             999999999885 3432   379999


Q ss_pred             EEcccceeeeeCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCc
Q 040833           69 LLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNG  148 (503)
Q Consensus        69 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  148 (503)
                      |++++|.+++ +|..   .++|++|++++|.+. .++..    .++|++|++++|.+++ +| .+..+++|++|++++|.
T Consensus        96 L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~  164 (454)
T 1jl5_A           96 LVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNS  164 (454)
T ss_dssp             EECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC
T ss_pred             EEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCc
Confidence            9999999985 6643   489999999999987 44432    3799999999999995 77 59999999999999999


Q ss_pred             CcccCCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccc
Q 040833          149 FSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLF  228 (503)
Q Consensus       149 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  228 (503)
                      +.+....   ..+|++|++++|.+...        ..+..+++|++|++++|.+.+ +|.    .+++|++|++++|.+.
T Consensus       165 l~~lp~~---~~~L~~L~L~~n~l~~l--------~~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~n~l~  228 (454)
T 1jl5_A          165 LKKLPDL---PPSLEFIAAGNNQLEEL--------PELQNLPFLTAIYADNNSLKK-LPD----LPLSLESIVAGNNILE  228 (454)
T ss_dssp             CSCCCCC---CTTCCEEECCSSCCSSC--------CCCTTCTTCCEEECCSSCCSS-CCC----CCTTCCEEECCSSCCS
T ss_pred             CcccCCC---cccccEEECcCCcCCcC--------ccccCCCCCCEEECCCCcCCc-CCC----CcCcccEEECcCCcCC
Confidence            8864332   35999999999988752        247788999999999999885 333    2358999999999998


Q ss_pred             cccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCcccc
Q 040833          229 GNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLG  308 (503)
Q Consensus       229 ~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  308 (503)
                       .++ .+..+++|++|++++|.+++ .|.   ..++|+.|++++|.+.+ .|..   +++|++|++++|.+.+.. .   
T Consensus       229 -~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~-~---  294 (454)
T 1jl5_A          229 -ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS-E---  294 (454)
T ss_dssp             -SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES-C---
T ss_pred             -ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc-C---
Confidence             555 48899999999999999985 333   34799999999999885 3432   489999999999998532 1   


Q ss_pred             CCCCCCEEECcCCcCcccCCcchhccc-cccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCC
Q 040833          309 KCQNLISLNLSNNNLSGTIPTEVIGLS-SLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLE  387 (503)
Q Consensus       309 ~~~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  387 (503)
                      ..++|++|++++|.+.+ ++    .++ .+ +.|++++|++++ ++..   +++|++|++++|.++ .+|.   .+++|+
T Consensus       295 ~~~~L~~L~l~~N~l~~-i~----~~~~~L-~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~  360 (454)
T 1jl5_A          295 LPPNLYYLNASSNEIRS-LC----DLPPSL-EELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLK  360 (454)
T ss_dssp             CCTTCCEEECCSSCCSE-EC----CCCTTC-CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCC
T ss_pred             cCCcCCEEECcCCcCCc-cc----CCcCcC-CEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhcc
Confidence            13799999999999984 22    333 45 999999999985 4443   589999999999998 4555   478999


Q ss_pred             EEECCCCcCcc--cCchhccCC-------------CCCCEEeCCCCcccc--ccCccCcCCCCCCeeecCCCcCcccCC
Q 040833          388 QLVMNGNFFQG--NIPSSLSSL-------------RGIENLDLSRNNLSG--RIPKYLENFPFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       388 ~L~L~~n~l~~--~~~~~~~~l-------------~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~  449 (503)
                      +|++++|.+++  .+|..+..+             ++|++|++++|++++  .+|      ++++.|.+.+|.+.+..+
T Consensus       361 ~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~  433 (454)
T 1jl5_A          361 QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYE  433 (454)
T ss_dssp             EEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------------------------
T ss_pred             EEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCccc
Confidence            99999999998  677887776             889999999999985  333      457888899998886544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.5e-35  Score=295.31  Aligned_cols=346  Identities=28%  Similarity=0.374  Sum_probs=253.8

Q ss_pred             CCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEE
Q 040833           39 LSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVL  118 (503)
Q Consensus        39 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  118 (503)
                      ++++++|+++++.+.. +| .+..+++|++|++++|.+.... . +.++++|++|++++|.+. .++. + ..+++|++|
T Consensus        45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~-~~~~-~-~~l~~L~~L  117 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIA-DITP-L-ANLTNLTGL  117 (466)
T ss_dssp             HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEE
T ss_pred             hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCch-h-hhccccCCEEECCCCccc-cChh-h-cCCCCCCEE
Confidence            4556666666666553 23 2555666666666666655322 2 556666666666666555 2332 2 235556666


Q ss_pred             EccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECc
Q 040833          119 NLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQIS  198 (503)
Q Consensus       119 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~  198 (503)
                      ++++|.+++. + .+..+++                       |++|++++|.+...        ..+..+++|++|+++
T Consensus       118 ~L~~n~l~~~-~-~~~~l~~-----------------------L~~L~l~~n~l~~~--------~~~~~l~~L~~L~l~  164 (466)
T 1o6v_A          118 TLFNNQITDI-D-PLKNLTN-----------------------LNRLELSSNTISDI--------SALSGLTSLQQLSFG  164 (466)
T ss_dssp             ECCSSCCCCC-G-GGTTCTT-----------------------CSEEEEEEEEECCC--------GGGTTCTTCSEEEEE
T ss_pred             ECCCCCCCCC-h-HHcCCCC-----------------------CCEEECCCCccCCC--------hhhccCCcccEeecC
Confidence            6655555522 1 1444444                       44555544444321        124455666666665


Q ss_pred             CCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCccccc
Q 040833          199 DNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGE  278 (503)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  278 (503)
                      + .+....  .+..++ +|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+.
T Consensus       165 ~-~~~~~~--~~~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  236 (466)
T 1o6v_A          165 N-QVTDLK--PLANLT-TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI  236 (466)
T ss_dssp             E-SCCCCG--GGTTCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             C-cccCch--hhccCC-CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc
Confidence            3 233222  255664 899999999998754  347889999999999999986544  77899999999999998854


Q ss_pred             CCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhc
Q 040833          279 IPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI  358 (503)
Q Consensus       279 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~  358 (503)
                        ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..++.+ +.|++++|.+.+..+  +..
T Consensus       237 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L-~~L~L~~n~l~~~~~--~~~  307 (466)
T 1o6v_A          237 --GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL-TNLELNENQLEDISP--ISN  307 (466)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTC-SEEECCSSCCSCCGG--GGG
T ss_pred             --hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCcc-CeEEcCCCcccCchh--hcC
Confidence              467889999999999999986544  8889999999999999985433  7778888 999999999986543  788


Q ss_pred             CCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeee
Q 040833          359 LKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLN  438 (503)
Q Consensus       359 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  438 (503)
                      +++|++|++++|.+++..+  +..+++|++|++++|.+++.  ..+..+++|++|++++|++++..|  +..+++|+.|+
T Consensus       308 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  381 (466)
T 1o6v_A          308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG  381 (466)
T ss_dssp             CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEE
T ss_pred             CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEe
Confidence            9999999999999987655  77899999999999999865  578899999999999999997776  88999999999


Q ss_pred             cCCCcCccc
Q 040833          439 LSFNHFEGE  447 (503)
Q Consensus       439 l~~n~l~~~  447 (503)
                      +++|++++.
T Consensus       382 l~~n~~~~~  390 (466)
T 1o6v_A          382 LNDQAWTNA  390 (466)
T ss_dssp             CCCEEEECC
T ss_pred             ccCCcccCC
Confidence            999999974

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=9.5e-36  Score=294.35  Aligned_cols=363  Identities=20%  Similarity=0.228  Sum_probs=254.6

Q ss_pred             cccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCcc
Q 040833            4 LVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFS   83 (503)
Q Consensus         4 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~   83 (503)
                      +++..+..++++++|++|++++|.+++. | .|..+++|++|++++|.+.+. |  +..+++|++|++++|.+++ ++  
T Consensus        30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--  101 (457)
T 3bz5_A           30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--  101 (457)
T ss_dssp             CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--
T ss_pred             cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--
Confidence            4455566778888999999999988854 5 688889999999999988864 3  8888899999999988874 33  


Q ss_pred             ccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCc
Q 040833           84 IYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLE  163 (503)
Q Consensus        84 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~  163 (503)
                      ++++++|++|++++|.+. .++  + ..+++|++|++++|.+++.   .+..+++|++|++++|...+.. .+..+++|+
T Consensus       102 ~~~l~~L~~L~L~~N~l~-~l~--~-~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~  173 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLT-KLD--V-SQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-DVTPQTQLT  173 (457)
T ss_dssp             CTTCTTCCEEECCSSCCS-CCC--C-TTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCC
T ss_pred             cCCCCcCCEEECCCCcCC-eec--C-CCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-ccccCCcCC
Confidence            788888899999888887 454  3 3488888888888888753   3777888888888888544333 466777788


Q ss_pred             EEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcE
Q 040833          164 WVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEF  243 (503)
Q Consensus       164 ~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  243 (503)
                      +|++++|.++..         .+..+++|+.|++++|.+.+.   .+..++ +|++|++++|.+.+ +|  +..+++|++
T Consensus       174 ~L~ls~n~l~~l---------~l~~l~~L~~L~l~~N~l~~~---~l~~l~-~L~~L~Ls~N~l~~-ip--~~~l~~L~~  237 (457)
T 3bz5_A          174 TLDCSFNKITEL---------DVSQNKLLNRLNCDTNNITKL---DLNQNI-QLTFLDCSSNKLTE-ID--VTPLTQLTY  237 (457)
T ss_dssp             EEECCSSCCCCC---------CCTTCTTCCEEECCSSCCSCC---CCTTCT-TCSEEECCSSCCSC-CC--CTTCTTCSE
T ss_pred             EEECCCCcccee---------ccccCCCCCEEECcCCcCCee---ccccCC-CCCEEECcCCcccc-cC--ccccCCCCE
Confidence            888877777642         144566777777777776643   144443 67777777776665 23  566667777


Q ss_pred             EEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcC
Q 040833          244 LHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNL  323 (503)
Q Consensus       244 L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  323 (503)
                      |++++|.+++..   +..+++|+.|+++++              +|+.+++++|.+.+..|  +..+++|+.|++++|..
T Consensus       238 L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~  298 (457)
T 3bz5_A          238 FDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQ  298 (457)
T ss_dssp             EECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTT
T ss_pred             EEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcc
Confidence            777777666432   344556666665544              34556666666544433  45678888888888876


Q ss_pred             cccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchh
Q 040833          324 SGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSS  403 (503)
Q Consensus       324 ~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  403 (503)
                      .+.+|..   ...+ +.++             +..+++|++|++++|.+++. +  +..+++|+.|++++|++++     
T Consensus       299 l~~l~~~---~~~L-~~L~-------------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-----  353 (457)
T 3bz5_A          299 LYLLDCQ---AAGI-TELD-------------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-----  353 (457)
T ss_dssp             CCEEECT---TCCC-SCCC-------------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-----
T ss_pred             cceeccC---CCcc-eEec-------------hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-----
Confidence            6554432   2222 3333             33446888999999988863 2  7788899999999998874     


Q ss_pred             ccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC
Q 040833          404 LSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI  450 (503)
Q Consensus       404 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  450 (503)
                         ++.|..|++++|.+.+.     ..+..|+.+++++|.+++.+|.
T Consensus       354 ---l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          354 ---FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             ---CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred             ---ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence               25667778888888754     2445678889999999888773

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.1e-35  Score=291.08  Aligned_cols=319  Identities=20%  Similarity=0.184  Sum_probs=183.8

Q ss_pred             cEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEccCC
Q 040833           19 RILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVN   98 (503)
Q Consensus        19 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n   98 (503)
                      +.++.+++.++ .+|..+.  +++++|++++|.+....+..|.++++|++|+|++|.+....|..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            46666777666 5565543  56777777777777666777777777777777777777666777777777777777777


Q ss_pred             CCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEEEcccccCCCCCC
Q 040833           99 QLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHLGNGKK  177 (503)
Q Consensus        99 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~  177 (503)
                      .+. .+|...+..+++|++|++++|.+++..+..+..+++|++|++++|.+....+. +..+++|++|++++|.+..   
T Consensus        91 ~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---  166 (477)
T 2id5_A           91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS---  166 (477)
T ss_dssp             CCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS---
T ss_pred             cCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc---
Confidence            776 56655555577777777777777766666777777777777777766655443 5566666666666665543   


Q ss_pred             CCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCc
Q 040833          178 DDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPG  257 (503)
Q Consensus       178 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~  257 (503)
                         .....+..+++|+.|++++|.+....+..+..++ +|++|++++|...+..+.......+|++|++++|.+++..+.
T Consensus       167 ---~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  242 (477)
T 2id5_A          167 ---IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY-RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL  242 (477)
T ss_dssp             ---CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCT-TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH
T ss_pred             ---cChhHhcccCCCcEEeCCCCcCcEeChhhcccCc-ccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH
Confidence               1122344455555555555555444443444443 455555555544433333333334555555555555533333


Q ss_pred             cccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccc
Q 040833          258 SIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSL  337 (503)
Q Consensus       258 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l  337 (503)
                      .+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..++++
T Consensus       243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  322 (477)
T 2id5_A          243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL  322 (477)
T ss_dssp             HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGC
T ss_pred             HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCccc
Confidence            44455555555555555554444445555555555555555554444455555555555555555543333333344444


Q ss_pred             cceeEccCCCCc
Q 040833          338 SIYLDLSQNQLN  349 (503)
Q Consensus       338 ~~~L~l~~n~l~  349 (503)
                       +.|++++|++.
T Consensus       323 -~~L~l~~N~l~  333 (477)
T 2id5_A          323 -ETLILDSNPLA  333 (477)
T ss_dssp             -CEEECCSSCEE
T ss_pred             -CEEEccCCCcc
Confidence             44444444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.8e-34  Score=283.89  Aligned_cols=356  Identities=19%  Similarity=0.230  Sum_probs=216.5

Q ss_pred             cCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEccCCCCcccCch
Q 040833           27 NLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPS  106 (503)
Q Consensus        27 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  106 (503)
                      ......+..++++++|++|++++|.+.+. | .+..+++|++|++++|.+++ ++  ++.+++|++|++++|.+. .++ 
T Consensus        29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~-~~~-  101 (457)
T 3bz5_A           29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLT-NLD-  101 (457)
T ss_dssp             TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS-CCC-
T ss_pred             CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCc-eee-
Confidence            34444556677888999999999888854 5 68888899999999998884 33  788888888888888887 344 


Q ss_pred             hhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCCCCCCccccccc
Q 040833          107 DLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSL  186 (503)
Q Consensus       107 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l  186 (503)
                       +. .+++|++|++++|.+++ ++  +..+++|++|++++|.+.+.  .+..+++|++|++++|....      ..  .+
T Consensus       102 -~~-~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~------~~--~~  166 (457)
T 3bz5_A          102 -VT-PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKIT------KL--DV  166 (457)
T ss_dssp             -CT-TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCC------CC--CC
T ss_pred             -cC-CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccc------cc--cc
Confidence             33 48888888888888874 33  77888888888888877763  36677777777777774322      11  24


Q ss_pred             cCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCC
Q 040833          187 VNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQ  266 (503)
Q Consensus       187 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~  266 (503)
                      ..+++|++|++++|.+.+. +  +..++ +|+.|++++|.+.+.   .+..+++|++|++++|.+++ .|  +..+++|+
T Consensus       167 ~~l~~L~~L~ls~n~l~~l-~--l~~l~-~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~  236 (457)
T 3bz5_A          167 TPQTQLTTLDCSFNKITEL-D--VSQNK-LLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLT  236 (457)
T ss_dssp             TTCTTCCEEECCSSCCCCC-C--CTTCT-TCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCS
T ss_pred             ccCCcCCEEECCCCcccee-c--cccCC-CCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCC
Confidence            4456666666666666542 2  33332 555555555555433   24455555555555555553 22  44555555


Q ss_pred             EEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCC
Q 040833          267 RLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN  346 (503)
Q Consensus       267 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n  346 (503)
                      .|++++|.+++..   ...+++|+.|+++.+              +|+++++++|...+.+|  +..++++ +.|++++|
T Consensus       237 ~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L-~~L~Ls~n  296 (457)
T 3bz5_A          237 YFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKI-KELDVTHN  296 (457)
T ss_dssp             EEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTC-CCCCCTTC
T ss_pred             EEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccC-CEEECCCC
Confidence            5555555554322   233444555544432              23344445554433333  2233444 45555555


Q ss_pred             CCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCc
Q 040833          347 QLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPK  426 (503)
Q Consensus       347 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  426 (503)
                      ...+.++.   ..++|+.|++             ..+++|++|++++|.+++.   .+..+++|+.|++++|++++    
T Consensus       297 ~~l~~l~~---~~~~L~~L~l-------------~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~----  353 (457)
T 3bz5_A          297 TQLYLLDC---QAAGITELDL-------------SQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD----  353 (457)
T ss_dssp             TTCCEEEC---TTCCCSCCCC-------------TTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB----
T ss_pred             cccceecc---CCCcceEech-------------hhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC----
Confidence            44333221   1233333333             3346778888888888763   26777888888888887764    


Q ss_pred             cCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCC
Q 040833          427 YLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGN  465 (503)
Q Consensus       427 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n  465 (503)
                          ++.|+.|++++|.+.+.    ..+..+..++++.|
T Consensus       354 ----l~~L~~L~l~~n~l~g~----~~~~~l~~l~l~~N  384 (457)
T 3bz5_A          354 ----FSSVGKIPALNNNFEAE----GQTITMPKETLTNN  384 (457)
T ss_dssp             ----CTTGGGSSGGGTSEEEE----EEEEECCCBCCBTT
T ss_pred             ----ccccccccccCCcEEec----ceeeecCccccccC
Confidence                25667777777777765    12344555555555

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.3e-34  Score=279.27  Aligned_cols=333  Identities=21%  Similarity=0.234  Sum_probs=228.0

Q ss_pred             CCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEE
Q 040833           87 LSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWV  165 (503)
Q Consensus        87 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L  165 (503)
                      ++++++++++++.+. .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+....+. +..+++|++|
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            467777777777766 66666655577777777777777765556677777777777777766655443 4555555555


Q ss_pred             EcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEE
Q 040833          166 GISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLH  245 (503)
Q Consensus       166 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  245 (503)
                      ++++|.                              +....+..+..++ +|++|++++|.+....+..+..+++|++|+
T Consensus       123 ~L~~n~------------------------------l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  171 (390)
T 3o6n_A          123 VLERND------------------------------LSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQ  171 (390)
T ss_dssp             ECCSSC------------------------------CCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTSSCTTCCEEE
T ss_pred             ECCCCc------------------------------cCcCCHHHhcCCC-CCcEEECCCCccCccChhhccCCCCCCEEE
Confidence            555544                              4422222233333 556666666655555555566666777777


Q ss_pred             ccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcc
Q 040833          246 LGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSG  325 (503)
Q Consensus       246 ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  325 (503)
                      +++|.+++.   .+..+++|+.+++++|.+.+.     ...++|++|++++|.+.....   ...++|++|++++|.+.+
T Consensus       172 l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~  240 (390)
T 3o6n_A          172 LSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTD  240 (390)
T ss_dssp             CCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCC
T ss_pred             CCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCcc
Confidence            777766643   244556777777777765532     234567777777777764422   224678888888887764


Q ss_pred             cCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhcc
Q 040833          326 TIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLS  405 (503)
Q Consensus       326 ~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  405 (503)
                      .  ..+..++.+ ++|++++|.+++..+..|..+++|++|++++|.+++ ++..+..+++|++|++++|.++ .+|..+.
T Consensus       241 ~--~~l~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~  315 (390)
T 3o6n_A          241 T--AWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP  315 (390)
T ss_dssp             C--GGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred             c--HHHcCCCCc-cEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCcccc
Confidence            3  456677777 788888888887777788888899999999998874 4556677889999999999888 5566677


Q ss_pred             CCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCccc
Q 040833          406 SLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGG  471 (503)
Q Consensus       406 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~  471 (503)
                      .+++|++|++++|+++...   +..+++|+.|++++|++.+... ...+..+....+.+++..|.+
T Consensus       316 ~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          316 QFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             HHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCT
T ss_pred             ccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceecc
Confidence            8899999999999987542   6778899999999999987543 344566666667777777754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.7e-33  Score=267.64  Aligned_cols=305  Identities=25%  Similarity=0.392  Sum_probs=168.4

Q ss_pred             CCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEE
Q 040833           86 NLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWV  165 (503)
Q Consensus        86 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L  165 (503)
                      .+++|++|+++++.+. .++. +. .+++|++|++++|.+++ ++. +..+++|++|++++|.+... +.+.        
T Consensus        42 ~l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~-~~~~--------  107 (347)
T 4fmz_A           42 ELESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI-SALQ--------  107 (347)
T ss_dssp             HHTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GGGT--------
T ss_pred             hcccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc-hHHc--------
Confidence            4455555555555554 3332 22 25555555555555542 222 44555555555555544321 2233        


Q ss_pred             EcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEE
Q 040833          166 GISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLH  245 (503)
Q Consensus       166 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  245 (503)
                                            .+++|++|++++|.+.+..+  +..++ +|++|++++|......+ .+..+++|++|+
T Consensus       108 ----------------------~l~~L~~L~l~~n~i~~~~~--~~~l~-~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~  161 (347)
T 4fmz_A          108 ----------------------NLTNLRELYLNEDNISDISP--LANLT-KMYSLNLGANHNLSDLS-PLSNMTGLNYLT  161 (347)
T ss_dssp             ----------------------TCTTCSEEECTTSCCCCCGG--GTTCT-TCCEEECTTCTTCCCCG-GGTTCTTCCEEE
T ss_pred             ----------------------CCCcCCEEECcCCcccCchh--hccCC-ceeEEECCCCCCccccc-chhhCCCCcEEE
Confidence                                  44445555555544442211  33332 45555555553332222 255556666666


Q ss_pred             ccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcc
Q 040833          246 LGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSG  325 (503)
Q Consensus       246 ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  325 (503)
                      +++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|+.+++++|.+.+..+  +..+++|++|++++|.+.+
T Consensus       162 l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~  235 (347)
T 4fmz_A          162 VTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD  235 (347)
T ss_dssp             CCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             ecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC
Confidence            66665553322  5555666666666666553322  5556666666666666653332  5556666666666666653


Q ss_pred             cCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhcc
Q 040833          326 TIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLS  405 (503)
Q Consensus       326 ~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  405 (503)
                      . +. +..++.+ ++|++++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+..+.
T Consensus       236 ~-~~-~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~  308 (347)
T 4fmz_A          236 L-SP-LANLSQL-TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG  308 (347)
T ss_dssp             C-GG-GTTCTTC-CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred             C-cc-hhcCCCC-CEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh
Confidence            2 22 4455555 5666666666532  3456667777777777777643  3466677777777777777766667777


Q ss_pred             CCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCc
Q 040833          406 SLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE  445 (503)
Q Consensus       406 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  445 (503)
                      .+++|++|++++|++++..|  +..+++|++|++++|+++
T Consensus       309 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          309 GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             TCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            77777777777777765544  666777777777777764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.3e-33  Score=275.14  Aligned_cols=309  Identities=17%  Similarity=0.174  Sum_probs=188.6

Q ss_pred             CCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEc
Q 040833           16 SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICV   95 (503)
Q Consensus        16 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l   95 (503)
                      +++++|+++++.++...+..|..+++|++|++++|.+....+.+|..+++|++|++++|.+....|..|.++++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            45555555555555333333455555555555555555444445555555555555555555444444555555555555


Q ss_pred             cCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCC
Q 040833           96 PVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNG  175 (503)
Q Consensus        96 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~  175 (503)
                      ++|.+. .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+...  .+.                  
T Consensus       125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~------------------  183 (390)
T 3o6n_A          125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLS------------------  183 (390)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGG------------------
T ss_pred             CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccc------------------
Confidence            555554 44444433455555555555555544444444555555555555444322  122                  


Q ss_pred             CCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccC
Q 040833          176 KKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRI  255 (503)
Q Consensus       176 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~  255 (503)
                                  .+++|+.+++++|.+...      ..++.+++|++++|.+... +.  ...++|++|++++|.+++. 
T Consensus       184 ------------~l~~L~~L~l~~n~l~~~------~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~-  241 (390)
T 3o6n_A          184 ------------LIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT-  241 (390)
T ss_dssp             ------------GCTTCSEEECCSSCCSEE------ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC-
T ss_pred             ------------cccccceeeccccccccc------CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc-
Confidence                        335556666665555421      1123566667766666543 22  2236777888888877743 


Q ss_pred             CccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccc
Q 040833          256 PGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLS  335 (503)
Q Consensus       256 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  335 (503)
                       ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +..+..+++|++|++++|++. .+|..+..++
T Consensus       242 -~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~  318 (390)
T 3o6n_A          242 -AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD  318 (390)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT
T ss_pred             -HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccC
Confidence             4667778888888888888777777788888888888888887743 444567788888888888887 5666677777


Q ss_pred             cccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccc
Q 040833          336 SLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSG  374 (503)
Q Consensus       336 ~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  374 (503)
                      .+ +.|++++|.++...   +..+++|++|++++|++..
T Consensus       319 ~L-~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          319 RL-ENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             TC-SEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred             cC-CEEECCCCccceeC---chhhccCCEEEcCCCCccc
Confidence            77 88888888887542   5667889999999998874

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.4e-33  Score=289.48  Aligned_cols=342  Identities=21%  Similarity=0.244  Sum_probs=241.9

Q ss_pred             CCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEE
Q 040833           87 LSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWV  165 (503)
Q Consensus        87 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L  165 (503)
                      +.+++.++++++.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+. ++.+++|++|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            466777777777775 66666655577777777777777766666777777777777777766655444 4555555555


Q ss_pred             EcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEE
Q 040833          166 GISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLH  245 (503)
Q Consensus       166 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  245 (503)
                      ++++|                              .+....+..|..++ +|++|++++|.+.+..+..+..+++|++|+
T Consensus       129 ~L~~n------------------------------~l~~l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  177 (597)
T 3oja_B          129 VLERN------------------------------DLSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQ  177 (597)
T ss_dssp             ECCSS------------------------------CCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             EeeCC------------------------------CCCCCCHHHhccCC-CCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence            55554                              44433333334443 566666666666555555666677777777


Q ss_pred             ccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcc
Q 040833          246 LGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSG  325 (503)
Q Consensus       246 ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  325 (503)
                      +++|.+++.   .+..++.|+.|++++|.+.+     +...+.|+.|++++|.+....+..   .++|+.|++++|.+.+
T Consensus       178 L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~  246 (597)
T 3oja_B          178 LSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD  246 (597)
T ss_dssp             CTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC
T ss_pred             CcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC
Confidence            777766643   24456677777777776653     234457778888887776443322   3578888888888874


Q ss_pred             cCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhcc
Q 040833          326 TIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLS  405 (503)
Q Consensus       326 ~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  405 (503)
                        +..+..++.+ +.|++++|.+.+..+..|..+++|++|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+.
T Consensus       247 --~~~l~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~  321 (597)
T 3oja_B          247 --TAWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP  321 (597)
T ss_dssp             --CGGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred             --ChhhccCCCC-CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccc
Confidence              3567777777 888888888887878888889999999999999985 4666677899999999999998 5677788


Q ss_pred             CCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCcccCCCCCCCCC
Q 040833          406 SLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTC  480 (503)
Q Consensus       406 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~~~~~~ls~~  480 (503)
                      .+++|++|+|++|.++...   +..+++|+.|++++|++.+.+. ...+..+....+.+++..|+....+....|
T Consensus       322 ~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c  392 (597)
T 3oja_B          322 QFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKIDYQLEHGLC  392 (597)
T ss_dssp             HHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCTTCEEETTEE
T ss_pred             cCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhH-HHHHHHHhhhccccccccCCcchhccCCcc
Confidence            8999999999999998543   6778999999999999997643 344566666667788888877655555545

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=9e-34  Score=266.90  Aligned_cols=254  Identities=31%  Similarity=0.541  Sum_probs=229.9

Q ss_pred             cCcEEEeecccccc--ccchhccCCCCCcEEEccC-CcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 040833          216 RLRILIVGNNQLFG--NIPSGLRNLVNLEFLHLGG-NQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITL  292 (503)
Q Consensus       216 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~ls~-n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  292 (503)
                      ++++|+++++.+.+  ..+..+..+++|++|++++ |.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            68888888888887  6778888899999999995 88888888889999999999999999988888888999999999


Q ss_pred             EccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccc-cccceeEccCCCCccCCCcchhcCCCCCeEeCCCCc
Q 040833          293 NFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLS-SLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENK  371 (503)
Q Consensus       293 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  371 (503)
                      ++++|.+.+..|..+..+++|++|++++|.+.+..|..+..++ .+ ++|++++|.+.+..+..+..++ |++|++++|.
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L-~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF-TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC-CEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC-cEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            9999999888888899999999999999999888898888888 55 8999999999988888888887 9999999999


Q ss_pred             ccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCC
Q 040833          372 LSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIK  451 (503)
Q Consensus       372 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  451 (503)
                      +++..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|++++..|..+..+++|++|++++|++++..|..
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            9988899999999999999999999866555 888999999999999999899999999999999999999999999888


Q ss_pred             CccCCCCceeccCCCCCcccC
Q 040833          452 GVFSNSSAISIDGNDNLCGGI  472 (503)
Q Consensus       452 ~~~~~l~~l~~~~n~~~c~~~  472 (503)
                      ..+++|+.+++++||++|+.+
T Consensus       288 ~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          288 GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEESTT
T ss_pred             ccccccChHHhcCCCCccCCC
Confidence            889999999999999999853

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.8e-32  Score=261.51  Aligned_cols=304  Identities=22%  Similarity=0.343  Sum_probs=132.4

Q ss_pred             CCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEE
Q 040833           39 LSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVL  118 (503)
Q Consensus        39 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  118 (503)
                      +++|++|+++++.+... + .+..+++|++|++++|.+.. ++. +.++++|++|++++|.+. .++ .+. .+++|++|
T Consensus        43 l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~-~~~-~~~-~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKIT-DIS-ALQ-NLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCG-GGT-TCTTCSEE
T ss_pred             cccccEEEEeCCccccc-h-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCccc-Cch-HHc-CCCcCCEE
Confidence            34444444444444321 1 13444444444444444432 111 444444444444444443 222 121 24444444


Q ss_pred             EccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECc
Q 040833          119 NLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQIS  198 (503)
Q Consensus       119 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~  198 (503)
                      ++++|.+++ .+. +..+++|++|++++|......+.+..+++|++|++++|.+...        ..+..+++|++|+++
T Consensus       116 ~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~--------~~~~~l~~L~~L~l~  185 (347)
T 4fmz_A          116 YLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV--------TPIANLTDLYSLSLN  185 (347)
T ss_dssp             ECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECT
T ss_pred             ECcCCcccC-chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc--------hhhccCCCCCEEEcc
Confidence            444444442 111 4444444444444443333333344444444444444443321        113334455555555


Q ss_pred             CCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCccccc
Q 040833          199 DNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGE  278 (503)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  278 (503)
                      +|.+.+..+  +..++ +++.+++++|.+.+..+  +..+++|++|++++|.+++                        .
T Consensus       186 ~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~------------------------~  236 (347)
T 4fmz_A          186 YNQIEDISP--LASLT-SLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD------------------------L  236 (347)
T ss_dssp             TSCCCCCGG--GGGCT-TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC------------------------C
T ss_pred             CCccccccc--ccCCC-ccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC------------------------C
Confidence            554442211  22222 44444444444432221  3344444444444444442                        2


Q ss_pred             CCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhc
Q 040833          279 IPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI  358 (503)
Q Consensus       279 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~  358 (503)
                      .+  +..+++|++|++++|.+...  ..+..+++|++|++++|.+.+.  ..+..++.+ +.|++++|.+.+..+..+..
T Consensus       237 ~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L-~~L~L~~n~l~~~~~~~l~~  309 (347)
T 4fmz_A          237 SP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL-NSLFLNNNQLGNEDMEVIGG  309 (347)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC-SEEECCSSCCCGGGHHHHHT
T ss_pred             cc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCC-CEEECcCCcCCCcChhHhhc
Confidence            11  33444444444444444422  2344444555555555544422  223444444 55555555555444555556


Q ss_pred             CCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCc
Q 040833          359 LKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ  397 (503)
Q Consensus       359 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  397 (503)
                      +++|++|++++|++++..|  +..+++|++|++++|.++
T Consensus       310 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          310 LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            6666666666666664433  555666666666666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=6.9e-33  Score=284.43  Aligned_cols=314  Identities=19%  Similarity=0.203  Sum_probs=256.1

Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCC
Q 040833          112 LPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASR  191 (503)
Q Consensus       112 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~  191 (503)
                      +.+++.++++++.++...+..+..+++|+.|++++|.+.+..+                             ..+..+++
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-----------------------------~~~~~l~~  100 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-----------------------------YAFAYAHT  100 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECT-----------------------------TTTTTCTT
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCCh-----------------------------HHhcCCCC
Confidence            5567777777776664444455666666666666666554333                             23445566


Q ss_pred             CCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833          192 LELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE  271 (503)
Q Consensus       192 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~  271 (503)
                      |++|++++|.+.+..+..+..++ +|++|++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|+.|+++
T Consensus       101 L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  179 (597)
T 3oja_B          101 IQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  179 (597)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCCCCCHHHHcCCC-CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence            77777777777766677777776 89999999999997766678999999999999999998888899999999999999


Q ss_pred             CCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccC
Q 040833          272 GNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGP  351 (503)
Q Consensus       272 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~  351 (503)
                      +|.+++.   .+..+++|+.|++++|.+..     +...++|++|++++|.+... +..+  .+.+ +.|++++|.+++.
T Consensus       180 ~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L-~~L~L~~n~l~~~  247 (597)
T 3oja_B          180 SNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV--NVEL-TILKLQHNNLTDT  247 (597)
T ss_dssp             TSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCC-CEEECCSSCCCCC
T ss_pred             CCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccc-cccc--CCCC-CEEECCCCCCCCC
Confidence            9998865   25568999999999998874     34567899999999999743 3322  2455 8999999999863


Q ss_pred             CCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCC
Q 040833          352 LPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENF  431 (503)
Q Consensus       352 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  431 (503)
                        ..+..+++|++|++++|.+++..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+
T Consensus       248 --~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l  323 (597)
T 3oja_B          248 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF  323 (597)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred             --hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccC
Confidence              678899999999999999998889999999999999999999985 5677788999999999999999 556677889


Q ss_pred             CCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCcccCC
Q 040833          432 PFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGIS  473 (503)
Q Consensus       432 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~~~  473 (503)
                      ++|+.|++++|++.+..  ...+++|+.+++++||+.|.+..
T Consensus       324 ~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~~~  363 (597)
T 3oja_B          324 DRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLR  363 (597)
T ss_dssp             TTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHH
T ss_pred             CCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChhHH
Confidence            99999999999998664  46789999999999999998753

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=8.3e-36  Score=297.62  Aligned_cols=365  Identities=17%  Similarity=0.132  Sum_probs=178.2

Q ss_pred             ccCCCCCCEEEcccceeee----eCCccccCCCCCcEEEccCCCCcccCchhhhcCCC----CCCEEEccCCcccc----
Q 040833           60 LSQLKRMLYLLLGVNKLSG----EIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLP----NLEVLNLCRNQFTG----  127 (503)
Q Consensus        60 ~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~----~L~~L~l~~n~~~~----  127 (503)
                      +..+++|++|++++|.+..    .++..+..+++|++|++++|.+.+..+..+...++    +|++|++++|.++.    
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  103 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  103 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence            3444444444444444431    12333444455555555555544333333333333    45555555555552    


Q ss_pred             cCCccccCCCCCCEEecccCcCcccCCC------ccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCc
Q 040833          128 PIPASISNASNLMRLVIAKNGFSGKVPS------LKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNN  201 (503)
Q Consensus       128 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~------l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  201 (503)
                      .++..+..+++|++|++++|.+......      ....++|++|++++|.++.....  .+...+..+++|++|++++|.
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~L~~n~  181 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE--PLASVLRAKPDFKELTVSNND  181 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--HHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH--HHHHHHhhCCCCCEEECcCCC
Confidence            2344555555555555555554322111      11233455555555444321100  122334444556666666655


Q ss_pred             ccccCchhHhh----ccccCcEEEeeccccccc----cchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCC
Q 040833          202 FGGMLPEAVGN----LSTRLRILIVGNNQLFGN----IPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGN  273 (503)
Q Consensus       202 ~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n  273 (503)
                      +.+..+..+..    ..++|++|++++|.+.+.    ++..+..+++|++|++++|.+.+.....+              
T Consensus       182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l--------------  247 (461)
T 1z7x_W          182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL--------------  247 (461)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH--------------
T ss_pred             cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHH--------------
Confidence            54332222221    112445555554444432    22333344444444444444332110000              


Q ss_pred             cccccCCccccCCCCCCEEEccCCcCccc----CCccccCCCCCCEEECcCCcCcccCCcchhcc-----ccccceeEcc
Q 040833          274 KFWGEIPSSIGNLTLLITLNFEENMLEGS----IPSSLGKCQNLISLNLSNNNLSGTIPTEVIGL-----SSLSIYLDLS  344 (503)
Q Consensus       274 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-----~~l~~~L~l~  344 (503)
                           .+..+..+++|++|++++|.++..    .+..+..+++|++|++++|.+.+..+..+...     +.+ ++|+++
T Consensus       248 -----~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L-~~L~L~  321 (461)
T 1z7x_W          248 -----CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL-ESLWVK  321 (461)
T ss_dssp             -----HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC-CEEECT
T ss_pred             -----HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc-eeeEcC
Confidence                 011122345555555555555432    23334445555555555555543322222221     233 566666


Q ss_pred             CCCCccC----CCcchhcCCCCCeEeCCCCcccccCCccccC-----CCCCCEEECCCCcCcc----cCchhccCCCCCC
Q 040833          345 QNQLNGP----LPSNFGILKNLGAIDISENKLSGQIPSSIGS-----CTRLEQLVMNGNFFQG----NIPSSLSSLRGIE  411 (503)
Q Consensus       345 ~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~  411 (503)
                      +|.+++.    ++..+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++    .++..+..+++|+
T Consensus       322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~  401 (461)
T 1z7x_W          322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  401 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence            6665543    2344556678888888888776544433322     5678888888888875    5667777788888


Q ss_pred             EEeCCCCccccccCccC-----cCCCCCCeeecCCCcCcc
Q 040833          412 NLDLSRNNLSGRIPKYL-----ENFPFLQNLNLSFNHFEG  446 (503)
Q Consensus       412 ~L~L~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~  446 (503)
                      +|++++|++++.....+     ...+.|+.|++.++.+..
T Consensus       402 ~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             EEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence            88888888765422221     223467777777776653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=8.5e-35  Score=290.28  Aligned_cols=305  Identities=17%  Similarity=0.095  Sum_probs=216.0

Q ss_pred             CCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhc----cccCcEEEeecccccccc----c
Q 040833          161 KLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNL----STRLRILIVGNNQLFGNI----P  232 (503)
Q Consensus       161 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~----~  232 (503)
                      +|++|++++|.+.....  ..++..+..+++|++|++++|.+.+..+..+...    .++|++|++++|.+.+..    +
T Consensus        86 ~L~~L~L~~n~i~~~~~--~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  163 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGC--GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  163 (461)
T ss_dssp             CCCEEECTTSCCBGGGH--HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             ceeEEEccCCCCCHHHH--HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence            45555555555442110  0234556667777777777777665444443331    125888888888776533    4


Q ss_pred             hhccCCCCCcEEEccCCcccccCCcccc-----CCCCCCEEEccCCccccc----CCccccCCCCCCEEEccCCcCcccC
Q 040833          233 SGLRNLVNLEFLHLGGNQFTGRIPGSIV-----DLYKLQRLALEGNKFWGE----IPSSIGNLTLLITLNFEENMLEGSI  303 (503)
Q Consensus       233 ~~~~~~~~L~~L~ls~n~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~  303 (503)
                      ..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    .+..+..+++|++|++++|.+.+..
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  243 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  243 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence            4566678889999998887654333332     356899999999988754    3556677899999999999887543


Q ss_pred             -----CccccCCCCCCEEECcCCcCccc----CCcchhccccccceeEccCCCCccCCCcchhc-----CCCCCeEeCCC
Q 040833          304 -----PSSLGKCQNLISLNLSNNNLSGT----IPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI-----LKNLGAIDISE  369 (503)
Q Consensus       304 -----~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l~~  369 (503)
                           +..+..+++|++|++++|.++..    ++..+..++.+ ++|++++|.+++..+..+..     .++|++|++++
T Consensus       244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL-KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC-CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCc-ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence                 22234589999999999999854    46666678888 99999999997654444443     26999999999


Q ss_pred             Cccccc----CCccccCCCCCCEEECCCCcCcccCchhccC-----CCCCCEEeCCCCcccc----ccCccCcCCCCCCe
Q 040833          370 NKLSGQ----IPSSIGSCTRLEQLVMNGNFFQGNIPSSLSS-----LRGIENLDLSRNNLSG----RIPKYLENFPFLQN  436 (503)
Q Consensus       370 n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~  436 (503)
                      |.+++.    ++..+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++    .++..+..+++|++
T Consensus       323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~  402 (461)
T 1z7x_W          323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE  402 (461)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred             CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence            999864    4556777899999999999998665554432     6899999999999986    56777888999999


Q ss_pred             eecCCCcCcccCC------CCCccCCCCceeccCCCCC
Q 040833          437 LNLSFNHFEGEVP------IKGVFSNSSAISIDGNDNL  468 (503)
Q Consensus       437 L~l~~n~l~~~~~------~~~~~~~l~~l~~~~n~~~  468 (503)
                      |++++|++.+...      .......++.|.+.++.+.
T Consensus       403 L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             EECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence            9999999875411      0112345777777665443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.98  E-value=1e-30  Score=248.54  Aligned_cols=287  Identities=18%  Similarity=0.252  Sum_probs=180.2

Q ss_pred             CCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEcc
Q 040833           17 KLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVP   96 (503)
Q Consensus        17 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~   96 (503)
                      ++++++++++.++ ..|..+.  +++++|++++|.+.+..+..|.++++|++|++++|.+....|..|.++++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            7889999988888 5666554  688999999999887777788999999999999999887778889999999999999


Q ss_pred             CCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcc--cCCC-ccCCCCCcEEEcccccCC
Q 040833           97 VNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSG--KVPS-LKILHKLEWVGISRNHLG  173 (503)
Q Consensus        97 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~-l~~l~~L~~L~l~~n~l~  173 (503)
                      +|.+. .+|..++   ++|++|++++|.+++..+..+..+++|++|++++|.+..  ..+. +..+++|++|++++|.+.
T Consensus       109 ~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          109 KNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             SSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            99887 7776653   688999999888886666678888888888888887753  2222 566666666666666655


Q ss_pred             CCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccc
Q 040833          174 NGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTG  253 (503)
Q Consensus       174 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~  253 (503)
                      ....       .+  .++|++|++++|.+.+..+.                         .+..+++|++|++++|.+++
T Consensus       185 ~l~~-------~~--~~~L~~L~l~~n~l~~~~~~-------------------------~~~~l~~L~~L~Ls~n~l~~  230 (330)
T 1xku_A          185 TIPQ-------GL--PPSLTELHLDGNKITKVDAA-------------------------SLKGLNNLAKLGLSFNSISA  230 (330)
T ss_dssp             SCCS-------SC--CTTCSEEECTTSCCCEECTG-------------------------GGTTCTTCCEEECCSSCCCE
T ss_pred             cCCc-------cc--cccCCEEECCCCcCCccCHH-------------------------HhcCCCCCCEEECCCCcCce
Confidence            3211       11  13455555555554444444                         44444455555555554444


Q ss_pred             cCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccC------CCCCCEEECcCCcCcc--
Q 040833          254 RIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGK------CQNLISLNLSNNNLSG--  325 (503)
Q Consensus       254 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~------~~~L~~L~l~~n~~~~--  325 (503)
                      ..+..+..+++|+.|++++|.+. ..|..+..+++|++|++++|.+++..+..|..      .+.++.+++++|++..  
T Consensus       231 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~  309 (330)
T 1xku_A          231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE  309 (330)
T ss_dssp             ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred             eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence            44444444455555555555444 33344444555555555555554443333322      2455555555555531  


Q ss_pred             cCCcchhccccccceeEccCC
Q 040833          326 TIPTEVIGLSSLSIYLDLSQN  346 (503)
Q Consensus       326 ~~~~~~~~~~~l~~~L~l~~n  346 (503)
                      ..|..+..+..+ +.+++++|
T Consensus       310 i~~~~f~~~~~l-~~l~L~~N  329 (330)
T 1xku_A          310 IQPSTFRCVYVR-AAVQLGNY  329 (330)
T ss_dssp             SCGGGGTTCCCG-GGEEC---
T ss_pred             cCccccccccce-eEEEeccc
Confidence            223344444444 55555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.98  E-value=6.1e-32  Score=254.40  Aligned_cols=255  Identities=31%  Similarity=0.503  Sum_probs=229.4

Q ss_pred             CCCCEEECcCCcccc--cCchhHhhccccCcEEEeec-cccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCC
Q 040833          190 SRLELLQISDNNFGG--MLPEAVGNLSTRLRILIVGN-NQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQ  266 (503)
Q Consensus       190 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~  266 (503)
                      .+++.|+++++.+.+  .+|..+..++ +|++|++++ +.+.+..|..+..+++|++|++++|.+++..|..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            468888999988887  7788888886 899999995 888878888899999999999999999888888999999999


Q ss_pred             EEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCC-CCCEEECcCCcCcccCCcchhccccccceeEccC
Q 040833          267 RLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQ-NLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQ  345 (503)
Q Consensus       267 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~  345 (503)
                      +|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+..|..+..+. + +.|++++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-~~L~Ls~  206 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-AFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C-SEEECCS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c-cEEECcC
Confidence            999999999888888899999999999999999888888888887 999999999999988898888886 5 9999999


Q ss_pred             CCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccC
Q 040833          346 NQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIP  425 (503)
Q Consensus       346 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  425 (503)
                      |.+++..+..|..+++|++|++++|.+++..+. +..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence            999988888999999999999999999866554 7889999999999999998999999999999999999999998888


Q ss_pred             ccCcCCCCCCeeecCCCcCcccCC
Q 040833          426 KYLENFPFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       426 ~~~~~~~~L~~L~l~~n~l~~~~~  449 (503)
                      .. ..+++|+.+++++|+..+..|
T Consensus       286 ~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          286 QG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             CC-ccccccChHHhcCCCCccCCC
Confidence            76 889999999999999665444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=5.6e-31  Score=250.53  Aligned_cols=286  Identities=21%  Similarity=0.261  Sum_probs=180.4

Q ss_pred             CCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEcc
Q 040833           17 KLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVP   96 (503)
Q Consensus        17 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~   96 (503)
                      ++++++++++.++ ..|..+.  +++++|++++|.+....+.+|.++++|++|++++|.+....|..|.++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            6888888888887 5666553  688888888888887777788888888888888888887778888888888888888


Q ss_pred             CCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcc--cCCC-ccCCCCCcEEEcccccCC
Q 040833           97 VNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSG--KVPS-LKILHKLEWVGISRNHLG  173 (503)
Q Consensus        97 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~-l~~l~~L~~L~l~~n~l~  173 (503)
                      +|.+. .+|..++   ++|++|++++|.++...+..+..+++|++|++++|.+..  ..+. +..+ +|++|++++|.+.
T Consensus       111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            88887 7776653   688888888888886555667788888888888887753  2222 3444 5555555555554


Q ss_pred             CCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccc
Q 040833          174 NGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTG  253 (503)
Q Consensus       174 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~  253 (503)
                      .                               +|..+   +++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus       186 ~-------------------------------l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~  231 (332)
T 2ft3_A          186 G-------------------------------IPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM  231 (332)
T ss_dssp             S-------------------------------CCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred             c-------------------------------cCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence            3                               12111   1245555555555544444445555555555555555554


Q ss_pred             cCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccC------CCCCCEEECcCCcCc--c
Q 040833          254 RIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGK------CQNLISLNLSNNNLS--G  325 (503)
Q Consensus       254 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~------~~~L~~L~l~~n~~~--~  325 (503)
                      ..+..+..+++|+.|++++|.+. ..|..+..+++|++|++++|.++...+..+..      .++|+.+++++|++.  +
T Consensus       232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~  310 (332)
T 2ft3_A          232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE  310 (332)
T ss_dssp             CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred             CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence            44445555555555555555555 34444555555555555555555444444332      244556666666554  3


Q ss_pred             cCCcchhccccccceeEccCC
Q 040833          326 TIPTEVIGLSSLSIYLDLSQN  346 (503)
Q Consensus       326 ~~~~~~~~~~~l~~~L~l~~n  346 (503)
                      ..+..+..++.+ +.+++++|
T Consensus       311 ~~~~~~~~l~~L-~~l~l~~n  330 (332)
T 2ft3_A          311 VQPATFRCVTDR-LAIQFGNY  330 (332)
T ss_dssp             SCGGGGTTBCCS-TTEEC---
T ss_pred             cCcccccccchh-hhhhcccc
Confidence            344445555555 55565554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=6.8e-30  Score=242.91  Aligned_cols=246  Identities=24%  Similarity=0.295  Sum_probs=125.1

Q ss_pred             CCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEc
Q 040833          191 RLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLAL  270 (503)
Q Consensus       191 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l  270 (503)
                      .+++|++++|.+.+..+..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.++. .|..+.  ++|++|++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l  128 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRV  128 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEEC
T ss_pred             CCeEEECCCCcCCEeChhhhccCC-CCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEEC
Confidence            344444444444433333344443 45555555554444444445555555555555555442 222221  35555555


Q ss_pred             cCCcccccCCccccCCCCCCEEEccCCcCcc--cCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCC
Q 040833          271 EGNKFWGEIPSSIGNLTLLITLNFEENMLEG--SIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL  348 (503)
Q Consensus       271 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l  348 (503)
                      ++|.+.+..+..+..+++|++|++++|.+..  ..+..+..+++|++|++++|.+. .+|..+.  +.+ ++|++++|.+
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L-~~L~l~~n~l  204 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSL-TELHLDGNKI  204 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTC-SEEECTTSCC
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccC-CEEECCCCcC
Confidence            5555554444445555555555555555432  33444555555555555555554 2333222  333 5555555555


Q ss_pred             ccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccC
Q 040833          349 NGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYL  428 (503)
Q Consensus       349 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  428 (503)
                      ++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|
T Consensus       205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence            5554555555566666666666655555555555566666666666555 445555555666666666666655444444


Q ss_pred             cC------CCCCCeeecCCCcCc
Q 040833          429 EN------FPFLQNLNLSFNHFE  445 (503)
Q Consensus       429 ~~------~~~L~~L~l~~n~l~  445 (503)
                      ..      .+.++.+++++|++.
T Consensus       284 ~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          284 CPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             SCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCcccccccccccceEeecCccc
Confidence            32      245556666666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=4.4e-30  Score=244.35  Aligned_cols=266  Identities=18%  Similarity=0.234  Sum_probs=164.3

Q ss_pred             CCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEE
Q 040833          190 SRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLA  269 (503)
Q Consensus       190 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~  269 (503)
                      +++++|++++|.+....+..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.++. .|..+.  ++|++|+
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~  129 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQ-HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELR  129 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEE
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCC-CCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEE
Confidence            3455566666655544444555554 56666666666665555566666666666666666663 333322  5666777


Q ss_pred             ccCCcccccCCccccCCCCCCEEEccCCcCcc--cCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCC
Q 040833          270 LEGNKFWGEIPSSIGNLTLLITLNFEENMLEG--SIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQ  347 (503)
Q Consensus       270 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~  347 (503)
                      +++|.+.+..+..+..+++|++|++++|.+..  ..+..+..+ +|++|++++|.+. .+|..+.  +.+ ++|++++|.
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L-~~L~l~~n~  204 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETL-NELHLDHNK  204 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC--SSC-SCCBCCSSC
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc--CCC-CEEECCCCc
Confidence            77766665555556666777777777766642  344555555 6777777777666 3444332  344 677777777


Q ss_pred             CccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCcc
Q 040833          348 LNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKY  427 (503)
Q Consensus       348 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  427 (503)
                      +++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..
T Consensus       205 i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~  283 (332)
T 2ft3_A          205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND  283 (332)
T ss_dssp             CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhH
Confidence            77666666777777777777777777666666777777777777777776 55666777777777777777777665555


Q ss_pred             CcC------CCCCCeeecCCCcCcc--cCC-CCCccCCCCceeccCC
Q 040833          428 LEN------FPFLQNLNLSFNHFEG--EVP-IKGVFSNSSAISIDGN  465 (503)
Q Consensus       428 ~~~------~~~L~~L~l~~n~l~~--~~~-~~~~~~~l~~l~~~~n  465 (503)
                      |..      .+.|+.|++++|++..  ..| ....+++|+.+++++|
T Consensus       284 ~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             SSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             ccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            543      3567777777777662  222 1233455666666555

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=2e-32  Score=281.87  Aligned_cols=431  Identities=16%  Similarity=0.097  Sum_probs=257.9

Q ss_pred             ccCCCcccCCCCCCcEEEcccCcCC---CCCCcccC------------CCCCCCEEECCCCccccCCCccccC-CC-CCC
Q 040833            5 VGKVPGKLGSLSKLRILAMHRNNLS---GEIPSSFG------------NLSSLEALSASANQFVGQIPETLSQ-LK-RML   67 (503)
Q Consensus         5 ~~~~~~~~~~~~~L~~L~l~~n~i~---~~~~~~~~------------~l~~L~~L~l~~n~i~~~~~~~~~~-l~-~L~   67 (503)
                      +...+..+..+++|++|+++++...   +..|..+.            .+++|++|++++|.+.+..+..+.. ++ +|+
T Consensus        62 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~  141 (592)
T 3ogk_B           62 TATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLE  141 (592)
T ss_dssp             GSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCC
T ss_pred             ccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCc
Confidence            3444555678899999999875421   12332222            6889999999999887665666655 34 499


Q ss_pred             EEEccccee-ee-eCCccccCCCCCcEEEccCCCCcccC---chhhhcCCCCCCEEEccCCccc----ccCCccccCCCC
Q 040833           68 YLLLGVNKL-SG-EIPFSIYNLSSLNYICVPVNQLQGSL---PSDLGFTLPNLEVLNLCRNQFT----GPIPASISNASN  138 (503)
Q Consensus        68 ~L~L~~n~i-~~-~~~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~l~~L~~L~l~~n~~~----~~~~~~~~~~~~  138 (503)
                      +|++++|.. .. .++....++++|++|++++|.+.+..   ...+...+++|++|++++|.++    ..++..+..+++
T Consensus       142 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~  221 (592)
T 3ogk_B          142 TLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS  221 (592)
T ss_dssp             EEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT
T ss_pred             EEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC
Confidence            999998872 21 12223447899999999999876442   1223345899999999999886    344455668899


Q ss_pred             CCEEecccCcCcccCCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCc
Q 040833          139 LMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLR  218 (503)
Q Consensus       139 L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  218 (503)
                      |++|++++|.+.+....+..+++|++++++.......   .......+..+++|+.++++++... .++..+...+ +|+
T Consensus       222 L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~-~L~  296 (592)
T 3ogk_B          222 LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIG---MPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAA-QIR  296 (592)
T ss_dssp             CCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTT---CTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGG-GCC
T ss_pred             CcEEeccCccHHHHHHHHhhhhHHHhhcccccccccc---hHHHHHHhhccccccccCccccchh-HHHHHHhhcC-CCc
Confidence            9999999988876554478889999999976332210   1133445667788888888875333 4555555554 888


Q ss_pred             EEEeeccccccccc-hhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccC-----------CcccccCC-ccccC
Q 040833          219 ILIVGNNQLFGNIP-SGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEG-----------NKFWGEIP-SSIGN  285 (503)
Q Consensus       219 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~-----------n~~~~~~~-~~~~~  285 (503)
                      +|++++|.+.+... ..+..+++|++|+++++...+..+..+..+++|++|++++           +.+++... .....
T Consensus       297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~  376 (592)
T 3ogk_B          297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG  376 (592)
T ss_dssp             EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred             EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence            99998888654333 3457788888888884322222233335677888888883           33432211 12344


Q ss_pred             CCCCCEEEccCCcCcccCCccccC-CCCCCEEECc----CCcCccc-----CCcchhccccccceeEccCCC--CccCCC
Q 040833          286 LTLLITLNFEENMLEGSIPSSLGK-CQNLISLNLS----NNNLSGT-----IPTEVIGLSSLSIYLDLSQNQ--LNGPLP  353 (503)
Q Consensus       286 ~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~----~n~~~~~-----~~~~~~~~~~l~~~L~l~~n~--l~~~~~  353 (503)
                      +++|++|++..+.+++.....+.. +++|++|+++    .|.+++.     .+..+..++++ +.|++++|.  +++...
T Consensus       377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L-~~L~L~~~~~~l~~~~~  455 (592)
T 3ogk_B          377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL-RRFAFYLRQGGLTDLGL  455 (592)
T ss_dssp             CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC-CEEEEECCGGGCCHHHH
T ss_pred             CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC-CEEEEecCCCCccHHHH
Confidence            677777777666666544444443 6777777775    3444421     12223344555 566665432  333322


Q ss_pred             cchh-cCCCCCeEeCCCCccccc-CCccccCCCCCCEEECCCCcCccc-CchhccCCCCCCEEeCCCCccccccCccC-c
Q 040833          354 SNFG-ILKNLGAIDISENKLSGQ-IPSSIGSCTRLEQLVMNGNFFQGN-IPSSLSSLRGIENLDLSRNNLSGRIPKYL-E  429 (503)
Q Consensus       354 ~~~~-~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~  429 (503)
                      ..+. .+++|++|++++|.+++. .+..+..+++|++|++++|.+++. .+.....+++|++|+|++|+++......+ .
T Consensus       456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~  535 (592)
T 3ogk_B          456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQM  535 (592)
T ss_dssp             HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGG
T ss_pred             HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHH
Confidence            2222 255566666666655532 222334555666666666655432 22223445566666666666554322222 2


Q ss_pred             CCCCCCeeecCC
Q 040833          430 NFPFLQNLNLSF  441 (503)
Q Consensus       430 ~~~~L~~L~l~~  441 (503)
                      .+|.+....+..
T Consensus       536 ~~p~l~~~~~~~  547 (592)
T 3ogk_B          536 ARPYWNIELIPS  547 (592)
T ss_dssp             CCTTEEEEEECC
T ss_pred             hCCCcEEEEecC
Confidence            344444444433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=1.2e-29  Score=238.49  Aligned_cols=276  Identities=24%  Similarity=0.267  Sum_probs=205.6

Q ss_pred             CEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCccccc--CCccccCCCCCCEEEc
Q 040833          193 ELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGR--IPGSIVDLYKLQRLAL  270 (503)
Q Consensus       193 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~--~~~~~~~~~~L~~L~l  270 (503)
                      +.++.+++.++ .+|..   +++++++|++++|.+....+..|..+++|++|++++|.++..  .+..+..+++|++|++
T Consensus        10 ~~l~c~~~~l~-~ip~~---~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCS-SCCSC---CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcc-cCCCC---CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            45666666555 33332   234677777777777655445567777778888877776632  2445566777888888


Q ss_pred             cCCcccccCCccccCCCCCCEEEccCCcCcccCC-ccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCc
Q 040833          271 EGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIP-SSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLN  349 (503)
Q Consensus       271 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~  349 (503)
                      ++|.+.. .+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..++++ ++|++++|.+.
T Consensus        86 s~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~  163 (306)
T 2z66_A           86 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQ  163 (306)
T ss_dssp             CSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC-CEEECTTCEEG
T ss_pred             CCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC-CEEECCCCccc
Confidence            8877763 44456777888888888887775544 467777888888888888776666667777777 78888888877


Q ss_pred             c-CCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccC
Q 040833          350 G-PLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYL  428 (503)
Q Consensus       350 ~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  428 (503)
                      + ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence            5 466778888999999999999998888889999999999999999997777788899999999999999998888888


Q ss_pred             cCCC-CCCeeecCCCcCcccCCCCCc---cCCCCceeccCCCCCcccCCC
Q 040833          429 ENFP-FLQNLNLSFNHFEGEVPIKGV---FSNSSAISIDGNDNLCGGISE  474 (503)
Q Consensus       429 ~~~~-~L~~L~l~~n~l~~~~~~~~~---~~~l~~l~~~~n~~~c~~~~~  474 (503)
                      ..++ +|++|++++|++.+.++..++   +...+.+.+..+...|..+..
T Consensus       244 ~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~  293 (306)
T 2z66_A          244 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD  293 (306)
T ss_dssp             CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred             HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence            8885 899999999999987664333   344455566666667765443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=1.9e-29  Score=234.59  Aligned_cols=248  Identities=22%  Similarity=0.226  Sum_probs=168.7

Q ss_pred             CCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCc-CcccCCccccCCCCCCEEE
Q 040833          239 VNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENM-LEGSIPSSLGKCQNLISLN  317 (503)
Q Consensus       239 ~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~  317 (503)
                      +++++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            455555555555555444555555566666666665555555555566666666666665 5544455566666666666


Q ss_pred             CcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCc
Q 040833          318 LSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ  397 (503)
Q Consensus       318 l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  397 (503)
                      +++|.+.+..+..+..++.+ ++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus       112 l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAAL-QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCCEECHhHhhCCcCC-CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence            66666665445555556666 66666666666555556777888888888888888666667888888888888888888


Q ss_pred             ccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCcccCCCCCC
Q 040833          398 GNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHL  477 (503)
Q Consensus       398 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~~~~~~l  477 (503)
                      +..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.+.++..+....++.+....+...|..+..  +
T Consensus       191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~--l  268 (285)
T 1ozn_A          191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR--L  268 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGG--G
T ss_pred             ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchH--h
Confidence            77788888888888888888888876666788888888999999988887776666666777777777777765433  2


Q ss_pred             CCCCCCCccccc
Q 040833          478 STCSIKESKQSR  489 (503)
Q Consensus       478 s~~~~~~~~~~~  489 (503)
                      .+-.+..+....
T Consensus       269 ~g~~l~~l~~~~  280 (285)
T 1ozn_A          269 AGRDLKRLAAND  280 (285)
T ss_dssp             TTCBGGGSCGGG
T ss_pred             CCcChhhcCHHH
Confidence            333444444433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=7e-29  Score=246.24  Aligned_cols=254  Identities=22%  Similarity=0.263  Sum_probs=211.8

Q ss_pred             CCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833          192 LELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE  271 (503)
Q Consensus       192 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~  271 (503)
                      ...++.++..+. .+|..   +++++++|++++|.+....+..|..+++|++|++++|.+.+..+..|.++++|++|+++
T Consensus        56 ~~~v~c~~~~l~-~iP~~---~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQG---IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCS-SCCSC---CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcC-ccCCC---CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            455666666665 34432   34578888888888887777888888999999999998888777888888999999999


Q ss_pred             CCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCC-cCcccCCcchhccccccceeEccCCCCcc
Q 040833          272 GNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNN-NLSGTIPTEVIGLSSLSIYLDLSQNQLNG  350 (503)
Q Consensus       272 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~l~~~L~l~~n~l~~  350 (503)
                      +|.++...+..|..+++|++|++++|.+....+..+..+++|++|++++| .+....+..+..++++ ++|++++|.+++
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~~  210 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL-KYLNLGMCNIKD  210 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC-CEEECTTSCCSS
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC-CEEECCCCcccc
Confidence            99888777777888899999999999988777778888999999999885 4443333457777777 899999998885


Q ss_pred             CCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcC
Q 040833          351 PLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLEN  430 (503)
Q Consensus       351 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  430 (503)
                      . + .+..+++|++|++++|.+++..+..|.++++|+.|++++|.+++..+..|.++++|++|+|++|+++...+..|..
T Consensus       211 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  288 (452)
T 3zyi_A          211 M-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP  288 (452)
T ss_dssp             C-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred             c-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence            4 3 4778899999999999999888899999999999999999999888899999999999999999999888888999


Q ss_pred             CCCCCeeecCCCcCcccCCCCC
Q 040833          431 FPFLQNLNLSFNHFEGEVPIKG  452 (503)
Q Consensus       431 ~~~L~~L~l~~n~l~~~~~~~~  452 (503)
                      +++|+.|++++|++.+.+...+
T Consensus       289 l~~L~~L~L~~Np~~CdC~~~~  310 (452)
T 3zyi_A          289 LRYLVELHLHHNPWNCDCDILW  310 (452)
T ss_dssp             CTTCCEEECCSSCEECSTTTHH
T ss_pred             ccCCCEEEccCCCcCCCCCchH
Confidence            9999999999999998877543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=9.3e-29  Score=244.46  Aligned_cols=255  Identities=24%  Similarity=0.288  Sum_probs=209.4

Q ss_pred             CCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833          192 LELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE  271 (503)
Q Consensus       192 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~  271 (503)
                      ...++.++..+. .+|..+   +++++.|++++|.+....+..|..+++|++|++++|.+.+..+..|.++++|++|+++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            445666666665 344432   3578888888888887777788888888888888888887777788888888888888


Q ss_pred             CCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCc-CcccCCcchhccccccceeEccCCCCcc
Q 040833          272 GNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNN-LSGTIPTEVIGLSSLSIYLDLSQNQLNG  350 (503)
Q Consensus       272 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~l~~~L~l~~n~l~~  350 (503)
                      +|.++...+..|..+++|++|++++|.+....+..+..+++|++|++++|. +....+..+..++++ ++|++++|.++.
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~~  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL-RYLNLAMCNLRE  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC-CEEECTTSCCSS
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc-CeecCCCCcCcc
Confidence            888887767778888889999998888887777788888899999998854 443334467777777 889999998874


Q ss_pred             CCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcC
Q 040833          351 PLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLEN  430 (503)
Q Consensus       351 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  430 (503)
                       ++ .+..+++|++|++++|.+++..+..|.++++|+.|++++|.+++..+..|..+++|++|+|++|+++...+..|..
T Consensus       200 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  277 (440)
T 3zyj_A          200 -IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP  277 (440)
T ss_dssp             -CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred             -cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence             33 4778899999999999999888899999999999999999999888889999999999999999999888888899


Q ss_pred             CCCCCeeecCCCcCcccCCCCCc
Q 040833          431 FPFLQNLNLSFNHFEGEVPIKGV  453 (503)
Q Consensus       431 ~~~L~~L~l~~n~l~~~~~~~~~  453 (503)
                      +++|+.|++++|++.+.+...+.
T Consensus       278 l~~L~~L~L~~Np~~CdC~l~~l  300 (440)
T 3zyj_A          278 LHHLERIHLHHNPWNCNCDILWL  300 (440)
T ss_dssp             CTTCCEEECCSSCEECSSTTHHH
T ss_pred             ccCCCEEEcCCCCccCCCCchHH
Confidence            99999999999999988775443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=3.4e-28  Score=240.43  Aligned_cols=250  Identities=22%  Similarity=0.234  Sum_probs=222.0

Q ss_pred             cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833          216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE  295 (503)
Q Consensus       216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  295 (503)
                      ..+.++..+..+. .+|..+.  ++++.|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            4567888888777 4455443  689999999999998888899999999999999999998888899999999999999


Q ss_pred             CCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCC-CCccCCCcchhcCCCCCeEeCCCCcccc
Q 040833          296 ENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN-QLNGPLPSNFGILKNLGAIDISENKLSG  374 (503)
Q Consensus       296 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~  374 (503)
                      +|.++...+..+..+++|++|++++|.+....+..+..++++ ++|++++| .+....+..|..+++|++|++++|.++ 
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-  198 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL-RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-  198 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC-CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc-CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence            999997777789999999999999999997767788889998 99999995 565555667899999999999999998 


Q ss_pred             cCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC-CCc
Q 040833          375 QIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KGV  453 (503)
Q Consensus       375 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~  453 (503)
                      .+| .+..+++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+. ...
T Consensus       199 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  277 (440)
T 3zyj_A          199 EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP  277 (440)
T ss_dssp             SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred             ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence            445 478899999999999999988899999999999999999999999999999999999999999999976653 455


Q ss_pred             cCCCCceeccCCCCCccc
Q 040833          454 FSNSSAISIDGNDNLCGG  471 (503)
Q Consensus       454 ~~~l~~l~~~~n~~~c~~  471 (503)
                      +++|+.+++++|||.|+|
T Consensus       278 l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          278 LHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             CTTCCEEECCSSCEECSS
T ss_pred             ccCCCEEEcCCCCccCCC
Confidence            789999999999999987

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=4.6e-28  Score=240.34  Aligned_cols=251  Identities=21%  Similarity=0.227  Sum_probs=222.0

Q ss_pred             cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833          216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE  295 (503)
Q Consensus       216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  295 (503)
                      ....++.++..+. .+|..+.  +++++|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            4567888887776 3454343  689999999999998888999999999999999999998888899999999999999


Q ss_pred             CCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccC-CCCccCCCcchhcCCCCCeEeCCCCcccc
Q 040833          296 ENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQ-NQLNGPLPSNFGILKNLGAIDISENKLSG  374 (503)
Q Consensus       296 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  374 (503)
                      +|.+....+..+..+++|++|++++|.+....+..+..++++ +.|++++ +.+....+..|..+++|++|++++|.+++
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL-MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC-CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc-cEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence            999998888889999999999999999996666788889999 9999998 45665556678899999999999999985


Q ss_pred             cCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC-CCc
Q 040833          375 QIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KGV  453 (503)
Q Consensus       375 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~  453 (503)
                      . | .+..+++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|+.|++++|++++..+. ...
T Consensus       211 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  288 (452)
T 3zyi_A          211 M-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP  288 (452)
T ss_dssp             C-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred             c-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence            4 4 578899999999999999988899999999999999999999988899999999999999999999976653 455


Q ss_pred             cCCCCceeccCCCCCcccC
Q 040833          454 FSNSSAISIDGNDNLCGGI  472 (503)
Q Consensus       454 ~~~l~~l~~~~n~~~c~~~  472 (503)
                      +++|+.+++++||+.|+|-
T Consensus       289 l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          289 LRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             CTTCCEEECCSSCEECSTT
T ss_pred             ccCCCEEEccCCCcCCCCC
Confidence            7899999999999999873

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=1.3e-31  Score=275.77  Aligned_cols=405  Identities=12%  Similarity=0.006  Sum_probs=268.0

Q ss_pred             CcccCCCCCCCEEECCCCccc---cCCCccc------------cCCCCCCEEEcccceeeeeCCccccC-CCC-CcEEEc
Q 040833           33 PSSFGNLSSLEALSASANQFV---GQIPETL------------SQLKRMLYLLLGVNKLSGEIPFSIYN-LSS-LNYICV   95 (503)
Q Consensus        33 ~~~~~~l~~L~~L~l~~n~i~---~~~~~~~------------~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~-L~~L~l   95 (503)
                      +..+..+++|++|+++++...   +..|..+            ..+++|++|+|++|.+....+..+.. ++. |++|++
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L  145 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL  145 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence            444567888999999775321   1222222            26788999999988776555555554 334 889998


Q ss_pred             cCCCC-cccCchhhhcCCCCCCEEEccCCcccccC----CccccCCCCCCEEecccCcCcccC----CC-ccCCCCCcEE
Q 040833           96 PVNQL-QGSLPSDLGFTLPNLEVLNLCRNQFTGPI----PASISNASNLMRLVIAKNGFSGKV----PS-LKILHKLEWV  165 (503)
Q Consensus        96 ~~n~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~~----~~-l~~l~~L~~L  165 (503)
                      ++|.. .......+...+++|++|++++|.+++..    +.....+++|++|++++|.+....    +. +..+++|++|
T Consensus       146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L  225 (592)
T 3ogk_B          146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV  225 (592)
T ss_dssp             ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred             cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence            88762 21112223334889999999988876542    234457888999999888776221    12 4567888888


Q ss_pred             EcccccCCCCCCCCccccccccCCCCCCEEECcCCccc---ccCchhHhhccccCcEEEeeccccccccchhccCCCCCc
Q 040833          166 GISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFG---GMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLE  242 (503)
Q Consensus       166 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  242 (503)
                      ++++|.+..       ....+..+++|++|+++.....   ......+... ++++.+.++++... ..+..+..+++|+
T Consensus       226 ~L~~~~~~~-------l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~-~l~~~~~~~~~L~  296 (592)
T 3ogk_B          226 KVGDFEILE-------LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP-RKLCRLGLSYMGPN-EMPILFPFAAQIR  296 (592)
T ss_dssp             ECSSCBGGG-------GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC-TTCCEEEETTCCTT-TGGGGGGGGGGCC
T ss_pred             eccCccHHH-------HHHHHhhhhHHHhhcccccccccchHHHHHHhhcc-ccccccCccccchh-HHHHHHhhcCCCc
Confidence            888876652       3455667788888888753222   1122233334 37888888775433 5566677788899


Q ss_pred             EEEccCCcccccCC-ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccC-----------CcCcccCC-ccccC
Q 040833          243 FLHLGGNQFTGRIP-GSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEE-----------NMLEGSIP-SSLGK  309 (503)
Q Consensus       243 ~L~ls~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-----------n~~~~~~~-~~~~~  309 (503)
                      +|++++|.+++... ..+..+++|+.|+++++......+..+..+++|++|++++           +.++.... .....
T Consensus       297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~  376 (592)
T 3ogk_B          297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG  376 (592)
T ss_dssp             EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred             EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence            99999888654322 3357788899999884322222333345678899999984           34443222 22345


Q ss_pred             CCCCCEEECcCCcCcccCCcchhc-cccccceeEcc----CCCCccC-----CCcchhcCCCCCeEeCCCCc--ccccCC
Q 040833          310 CQNLISLNLSNNNLSGTIPTEVIG-LSSLSIYLDLS----QNQLNGP-----LPSNFGILKNLGAIDISENK--LSGQIP  377 (503)
Q Consensus       310 ~~~L~~L~l~~n~~~~~~~~~~~~-~~~l~~~L~l~----~n~l~~~-----~~~~~~~~~~L~~L~l~~n~--l~~~~~  377 (503)
                      +++|++|++..+.+++..+..+.. ++++ +.|+++    .|.+++.     .+..+..+++|++|++++|.  +++..+
T Consensus       377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L-~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~  455 (592)
T 3ogk_B          377 CQELEYMAVYVSDITNESLESIGTYLKNL-CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL  455 (592)
T ss_dssp             CTTCSEEEEEESCCCHHHHHHHHHHCCSC-CEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred             CccCeEEEeecCCccHHHHHHHHhhCCCC-cEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence            789999999888887666666655 6666 888886    5667643     22336678899999997654  554333


Q ss_pred             ccc-cCCCCCCEEECCCCcCccc-CchhccCCCCCCEEeCCCCccccc-cCccCcCCCCCCeeecCCCcCccc
Q 040833          378 SSI-GSCTRLEQLVMNGNFFQGN-IPSSLSSLRGIENLDLSRNNLSGR-IPKYLENFPFLQNLNLSFNHFEGE  447 (503)
Q Consensus       378 ~~~-~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~  447 (503)
                      ..+ ..+++|++|++++|.+++. .+..+.++++|++|+|++|.+++. .+..+..+++|++|++++|+++..
T Consensus       456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            333 3478899999999988753 345567889999999999988654 334456788899999999997753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=9.4e-29  Score=237.26  Aligned_cols=258  Identities=17%  Similarity=0.186  Sum_probs=181.7

Q ss_pred             CCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEE
Q 040833          190 SRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLA  269 (503)
Q Consensus       190 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~  269 (503)
                      ++|++|++++|.+.+..+..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            3566666666666655444555554 677777777777665566677777777777777777755444567777777777


Q ss_pred             ccCCcccccCC-ccccCCCCCCEEEccCCc-CcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCC
Q 040833          270 LEGNKFWGEIP-SSIGNLTLLITLNFEENM-LEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQ  347 (503)
Q Consensus       270 l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~  347 (503)
                      +++|.+.+... ..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..+..+..++++ ++|++++|.
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-~~L~l~~n~  209 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV-SHLILHMKQ  209 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE-EEEEEECSC
T ss_pred             CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC-CeecCCCCc
Confidence            77777764443 356777777777777773 555556667777777777777777776667777777777 777777777


Q ss_pred             CccCCCcchhcCCCCCeEeCCCCcccccCCccc---cCCCCCCEEECCCCcCcc----cCchhccCCCCCCEEeCCCCcc
Q 040833          348 LNGPLPSNFGILKNLGAIDISENKLSGQIPSSI---GSCTRLEQLVMNGNFFQG----NIPSSLSSLRGIENLDLSRNNL  420 (503)
Q Consensus       348 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l  420 (503)
                      ++......+..+++|++|++++|.+++..+..+   ...+.++.++++++.+.+    .+|..+..+++|++|++++|++
T Consensus       210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l  289 (353)
T 2z80_A          210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL  289 (353)
T ss_dssp             STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred             cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence            764433344457788888888888775444332   235667888888887764    3567788899999999999999


Q ss_pred             ccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833          421 SGRIPKYLENFPFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       421 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  449 (503)
                      +...+..|..+++|++|++++|++.+.+|
T Consensus       290 ~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          290 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            85555557889999999999999988776

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=6.3e-29  Score=238.45  Aligned_cols=279  Identities=18%  Similarity=0.158  Sum_probs=234.6

Q ss_pred             CCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCE
Q 040833          188 NASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQR  267 (503)
Q Consensus       188 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~  267 (503)
                      .|+.....+.+++.++ .+|..+   ++++++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            3555667888888887 455533   358999999999999777778999999999999999999888888999999999


Q ss_pred             EEccCCcccccCCccccCCCCCCEEEccCCcCcccCC-ccccCCCCCCEEECcCC-cCcccCCcchhccccccceeEccC
Q 040833          268 LALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIP-SSLGKCQNLISLNLSNN-NLSGTIPTEVIGLSSLSIYLDLSQ  345 (503)
Q Consensus       268 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~l~~~L~l~~  345 (503)
                      |++++|.+++..+..+..+++|++|++++|.+..... ..+..+++|++|++++| .+.+..+..+..++.+ ++|++++
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L-~~L~l~~  183 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL-EELEIDA  183 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE-EEEEEEE
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC-CEEECCC
Confidence            9999999997666668999999999999999996555 57889999999999999 4665566788888888 9999999


Q ss_pred             CCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhc---cCCCCCCEEeCCCCcccc
Q 040833          346 NQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSL---SSLRGIENLDLSRNNLSG  422 (503)
Q Consensus       346 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~  422 (503)
                      |.+.+..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+   ...+.++.++++++.+++
T Consensus       184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~  263 (353)
T 2z80_A          184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD  263 (353)
T ss_dssp             TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred             CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence            99998888999999999999999999975444455668999999999999987554443   346789999999998875


Q ss_pred             ----ccCccCcCCCCCCeeecCCCcCcccCCC-CCccCCCCceeccCCCCCccc
Q 040833          423 ----RIPKYLENFPFLQNLNLSFNHFEGEVPI-KGVFSNSSAISIDGNDNLCGG  471 (503)
Q Consensus       423 ----~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~l~~~~n~~~c~~  471 (503)
                          .+|..+..+++|++|++++|+++..++. ...+++|+.+++++||+.|++
T Consensus       264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          264 ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             HHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence                3566788999999999999999965554 366899999999999999976

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=5.4e-28  Score=227.28  Aligned_cols=251  Identities=22%  Similarity=0.239  Sum_probs=216.6

Q ss_pred             cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccC--CccccCCCCCCEEE
Q 040833          216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEI--PSSIGNLTLLITLN  293 (503)
Q Consensus       216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~  293 (503)
                      ..+.++.+++.+.. +|..+  .+++++|++++|.+++..+..|..+++|++|++++|.+....  +..+..+++|++|+
T Consensus         8 ~~~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A            8 SGTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred             CCCEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence            34678888888774 44433  368999999999999666667899999999999999987442  45667799999999


Q ss_pred             ccCCcCcccCCccccCCCCCCEEECcCCcCcccCC-cchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcc
Q 040833          294 FEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIP-TEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKL  372 (503)
Q Consensus       294 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  372 (503)
                      +++|.+.. .+..+..+++|++|++++|.+.+..+ ..+..++++ ++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus        85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  162 (306)
T 2z66_A           85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF  162 (306)
T ss_dssp             CCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTC-CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred             CCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCC-CEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence            99999984 55568899999999999999985544 577888888 9999999999988888899999999999999999


Q ss_pred             cc-cCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC-
Q 040833          373 SG-QIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-  450 (503)
Q Consensus       373 ~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-  450 (503)
                      ++ ..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+. 
T Consensus       163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  242 (306)
T 2z66_A          163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE  242 (306)
T ss_dssp             GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred             ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence            86 5788999999999999999999988889999999999999999999988777899999999999999999987663 


Q ss_pred             CCcc-CCCCceeccCCCCCccc
Q 040833          451 KGVF-SNSSAISIDGNDNLCGG  471 (503)
Q Consensus       451 ~~~~-~~l~~l~~~~n~~~c~~  471 (503)
                      ...+ ++|+.+++++|++.|+|
T Consensus       243 ~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          243 LQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             CCCCCTTCCEEECTTCCEECSG
T ss_pred             HHhhhccCCEEEccCCCeeccc
Confidence            3444 58999999999999975

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.1e-27  Score=222.77  Aligned_cols=251  Identities=20%  Similarity=0.214  Sum_probs=208.0

Q ss_pred             CEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccC
Q 040833          193 ELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEG  272 (503)
Q Consensus       193 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~  272 (503)
                      ++++.+++.+. .+|..   .++++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            56777777776 33432   345889999999988877777788899999999999998877788889999999999999


Q ss_pred             Cc-ccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccC
Q 040833          273 NK-FWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGP  351 (503)
Q Consensus       273 n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~  351 (503)
                      |. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++.+ ++|++++|.+++.
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~  168 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSV  168 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCEE
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-cEEECCCCccccc
Confidence            97 776667888899999999999999987778888889999999999999986666667788888 8999999999877


Q ss_pred             CCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCC
Q 040833          352 LPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENF  431 (503)
Q Consensus       352 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  431 (503)
                      .+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++....+. ....
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~  247 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLW  247 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHH
T ss_pred             CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHH
Confidence            667788999999999999999988899999999999999999999987778899999999999999999743221 1112


Q ss_pred             CCCCeeecCCCcCcccCC
Q 040833          432 PFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       432 ~~L~~L~l~~n~l~~~~~  449 (503)
                      ..++.+....+.+.+..|
T Consensus       248 ~~l~~~~~~~~~~~c~~p  265 (285)
T 1ozn_A          248 AWLQKFRGSSSEVPCSLP  265 (285)
T ss_dssp             HHHHHCCSEECCCBEEES
T ss_pred             HHHHhcccccCccccCCc
Confidence            335566677888887776

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=5.8e-27  Score=221.68  Aligned_cols=224  Identities=20%  Similarity=0.283  Sum_probs=170.5

Q ss_pred             cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833          216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE  295 (503)
Q Consensus       216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  295 (503)
                      .++.|+++++.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. ..|..+..+++|++|+++
T Consensus        82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred             ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence            5666777776666 44555556667777777777666 55666666777777777777666 456666667777777777


Q ss_pred             CCcCcccCCcccc---------CCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEe
Q 040833          296 ENMLEGSIPSSLG---------KCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAID  366 (503)
Q Consensus       296 ~n~~~~~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~  366 (503)
                      +|.+.+..|..+.         .+++|++|++++|.+. .+|..+..++.+ ++|++++|.+.+ ++..+..+++|++|+
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L-~~L~L~~N~l~~-l~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-KSLKIRNSPLSA-LGPAIHHLPKLEELD  235 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC-CEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC-CEEEccCCCCCc-CchhhccCCCCCEEE
Confidence            7665555555443         4888888888888887 777778888877 888888888884 555688888888888


Q ss_pred             CCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCc
Q 040833          367 ISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE  445 (503)
Q Consensus       367 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  445 (503)
                      +++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|+|++|++.+.+|..+..+++|+.+++..+.+.
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            8888888888888888888888888888888888888888888888888888888888888888888888888876655

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.5e-26  Score=218.87  Aligned_cols=225  Identities=24%  Similarity=0.322  Sum_probs=189.7

Q ss_pred             CCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEE
Q 040833          190 SRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLA  269 (503)
Q Consensus       190 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~  269 (503)
                      ++++.|+++++.+. .+|..+..++ +|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGT-TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCC-CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            56777777777776 5566666664 7888888888777 66667777888888888888877 5677778888888888


Q ss_pred             ccCCcccccCCcccc---------CCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccce
Q 040833          270 LEGNKFWGEIPSSIG---------NLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIY  340 (503)
Q Consensus       270 l~~n~~~~~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~  340 (503)
                      +++|...+..|..+.         .+++|++|++++|.+. ..|..+..+++|++|++++|.+. .+|..+..++++ ++
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L-~~  233 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL-EE  233 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTC-CE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCC-CE
Confidence            888776666666554         4899999999999988 66777889999999999999998 567778888888 89


Q ss_pred             eEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCcc
Q 040833          341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL  420 (503)
Q Consensus       341 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  420 (503)
                      |++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            99999999888899999999999999999999889999999999999999999999999999999999999999998876


Q ss_pred             c
Q 040833          421 S  421 (503)
Q Consensus       421 ~  421 (503)
                      .
T Consensus       314 ~  314 (328)
T 4fcg_A          314 A  314 (328)
T ss_dssp             C
T ss_pred             H
Confidence            5

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=6.2e-28  Score=227.13  Aligned_cols=248  Identities=21%  Similarity=0.211  Sum_probs=188.1

Q ss_pred             cCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccccc-ccchhcc-------CCCCCcEEEccCCcccccCCcc
Q 040833          187 VNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFG-NIPSGLR-------NLVNLEFLHLGGNQFTGRIPGS  258 (503)
Q Consensus       187 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-------~~~~L~~L~ls~n~~~~~~~~~  258 (503)
                      ...++|+.+++++|.+  .+|..+..   .++.|+++++.+.. ..+..+.       ++++|++|++++|.+++..|..
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             ccCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            3446688888888887  55655543   37888888888743 3444343       6889999999999998777776


Q ss_pred             c--cCCCCCCEEEccCCcccccCCccccCC-----CCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCccc--CCc
Q 040833          259 I--VDLYKLQRLALEGNKFWGEIPSSIGNL-----TLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGT--IPT  329 (503)
Q Consensus       259 ~--~~~~~L~~L~l~~n~~~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~  329 (503)
                      +  ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..+..+..+++|++|++++|++.+.  .+.
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence            5  8889999999999998866 6666655     8999999999999888878889999999999999987644  222


Q ss_pred             ch--hccccccceeEccCCCCcc---CCCcchhcCCCCCeEeCCCCcccccCC-ccccCCCCCCEEECCCCcCcccCchh
Q 040833          330 EV--IGLSSLSIYLDLSQNQLNG---PLPSNFGILKNLGAIDISENKLSGQIP-SSIGSCTRLEQLVMNGNFFQGNIPSS  403 (503)
Q Consensus       330 ~~--~~~~~l~~~L~l~~n~l~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~  403 (503)
                      .+  ..++.+ ++|++++|.+++   .....+..+++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..
T Consensus       194 ~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~  271 (312)
T 1wwl_A          194 ALCPLKFPTL-QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG  271 (312)
T ss_dssp             HSCTTSCTTC-CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred             HHHhccCCCC-CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence            33  566777 888888888873   222334567888888888888886553 45566788888888888888 56665


Q ss_pred             ccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcc
Q 040833          404 LSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEG  446 (503)
Q Consensus       404 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  446 (503)
                      +.  ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            55  7888888888888865 54 7888888888888888874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=1e-29  Score=261.87  Aligned_cols=427  Identities=15%  Similarity=0.090  Sum_probs=208.9

Q ss_pred             ccCCCCCCcEEEcccCcCCC---CCCcc------------cCCCCCCCEEECCCCccccCCCcccc-CCCCCCEEEcccc
Q 040833           11 KLGSLSKLRILAMHRNNLSG---EIPSS------------FGNLSSLEALSASANQFVGQIPETLS-QLKRMLYLLLGVN   74 (503)
Q Consensus        11 ~~~~~~~L~~L~l~~n~i~~---~~~~~------------~~~l~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n   74 (503)
                      .+..+++|++|+++++....   ..|..            +..+++|++|++++|.+.+..+..+. .+++|++|++++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            34567788888888764211   11111            23567788888877776655555553 5777888888777


Q ss_pred             -eeeee-CCccccCCCCCcEEEccCCCCcccCchh---hhcCCCCCCEEEccCCc--ccc-cCCccccCCCCCCEEeccc
Q 040833           75 -KLSGE-IPFSIYNLSSLNYICVPVNQLQGSLPSD---LGFTLPNLEVLNLCRNQ--FTG-PIPASISNASNLMRLVIAK  146 (503)
Q Consensus        75 -~i~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~L~l~~n~--~~~-~~~~~~~~~~~L~~L~l~~  146 (503)
                       .+... ++..+.++++|++|++++|.+.+..+..   +...+++|++|++++|.  ++. .+...+..+++|++|++++
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~  220 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR  220 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence             34321 3333446777778887777765433222   22246677777777765  211 1112233467777777777


Q ss_pred             CcCcccCCC-ccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEE-ECcCCcccccCchhHhhccccCcEEEeec
Q 040833          147 NGFSGKVPS-LKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELL-QISDNNFGGMLPEAVGNLSTRLRILIVGN  224 (503)
Q Consensus       147 n~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  224 (503)
                      |......+. +..+++|++|+++.+...............+..+++|+.+ .+.+... ..++..+...+ +|++|++++
T Consensus       221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~-~L~~L~L~~  298 (594)
T 2p1m_B          221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCS-RLTTLNLSY  298 (594)
T ss_dssp             TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHT-TCCEEECTT
T ss_pred             CCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhC-CCCEEEccC
Confidence            632222222 5566777777765443210000000222345666677776 3332221 12333333333 677777777


Q ss_pred             ccccccc-chhccCCCCCcEEEccCCccccc-CCccccCCCCCCEEEccC---------CcccccCCccc-cCCCCCCEE
Q 040833          225 NQLFGNI-PSGLRNLVNLEFLHLGGNQFTGR-IPGSIVDLYKLQRLALEG---------NKFWGEIPSSI-GNLTLLITL  292 (503)
Q Consensus       225 ~~~~~~~-~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~~~~L~~L~l~~---------n~~~~~~~~~~-~~~~~L~~L  292 (503)
                      |.+.+.. ...+..+++|++|++++| +... .+.....+++|++|++.+         +.+++.....+ ..+++|++|
T Consensus       299 ~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L  377 (594)
T 2p1m_B          299 ATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV  377 (594)
T ss_dssp             CCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHH
Confidence            7654322 222456677777777766 3211 111222456677776633         22222111112 235666666


Q ss_pred             EccCCcCcccCCcccc-CCCCCCEEECc--C----CcCccc-----CCcchhccccccceeEccCCCCccCCCcchhc-C
Q 040833          293 NFEENMLEGSIPSSLG-KCQNLISLNLS--N----NNLSGT-----IPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI-L  359 (503)
Q Consensus       293 ~l~~n~~~~~~~~~~~-~~~~L~~L~l~--~----n~~~~~-----~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~-~  359 (503)
                      .+..+.+++.....+. .+++|++|+++  +    +.+++.     .+..+..++++ +.|++++ .+++.....+.. +
T Consensus       378 ~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L-~~L~L~~-~l~~~~~~~l~~~~  455 (594)
T 2p1m_B          378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL-RRLSLSG-LLTDKVFEYIGTYA  455 (594)
T ss_dssp             EEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTC-CEEECCS-SCCHHHHHHHHHHC
T ss_pred             HHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCc-cEEeecC-cccHHHHHHHHHhc
Confidence            6655555543333332 35666666666  2    233210     01112333444 5555544 333332223332 4


Q ss_pred             CCCCeEeCCCCcccccCCccc-cCCCCCCEEECCCCcCcccCch-hccCCCCCCEEeCCCCccccccCccC-cCCCCCCe
Q 040833          360 KNLGAIDISENKLSGQIPSSI-GSCTRLEQLVMNGNFFQGNIPS-SLSSLRGIENLDLSRNNLSGRIPKYL-ENFPFLQN  436 (503)
Q Consensus       360 ~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~  436 (503)
                      ++|++|++++|.+++..+..+ ..+++|++|++++|.+++.... ....+++|++|++++|+++......+ ..+|.|+.
T Consensus       456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i  535 (594)
T 2p1m_B          456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNV  535 (594)
T ss_dssp             TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEE
T ss_pred             hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEE
Confidence            555555555555543322222 3355555555555555432222 22334555555555555533222222 33444444


Q ss_pred             eecCCC
Q 040833          437 LNLSFN  442 (503)
Q Consensus       437 L~l~~n  442 (503)
                      ..+..+
T Consensus       536 ~~~~~~  541 (594)
T 2p1m_B          536 EVIDER  541 (594)
T ss_dssp             EEECSS
T ss_pred             EEecCC
Confidence            444433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=6e-27  Score=220.90  Aligned_cols=257  Identities=18%  Similarity=0.166  Sum_probs=167.6

Q ss_pred             CCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833          192 LELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE  271 (503)
Q Consensus       192 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~  271 (503)
                      ++..+++.+.+.......+.. ++++++|++++|.+.+..+..+..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQS-AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTT-GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             eeEeeccccchhhhHHHHhcc-CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            344455555544332233333 2367777777777776666667777777777777777764433  6677777777777


Q ss_pred             CCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccC
Q 040833          272 GNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGP  351 (503)
Q Consensus       272 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~  351 (503)
                      +|.+++..     ..++|++|++++|.+.+..+.   .+++|++|++++|.+.+..+..+..++.+ ++|++++|.+++.
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~  159 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTV  159 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSE-EEEECTTSCCCEE
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCC-CEEECCCCCCCcc
Confidence            77766332     236777777777777655433   25667777777777776556666667777 7777777777765


Q ss_pred             CCcch-hcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcC
Q 040833          352 LPSNF-GILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLEN  430 (503)
Q Consensus       352 ~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  430 (503)
                      .+..+ ..+++|++|++++|.+++..  ....+++|++|++++|.+++. +..+..+++|++|++++|+++ .+|..+..
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~  235 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRF  235 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred             cHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhc
Confidence            55554 35777888888888777542  223467788888888877743 444777788888888888877 45666777


Q ss_pred             CCCCCeeecCCCcCccc-CC-CCCccCCCCceeccC
Q 040833          431 FPFLQNLNLSFNHFEGE-VP-IKGVFSNSSAISIDG  464 (503)
Q Consensus       431 ~~~L~~L~l~~n~l~~~-~~-~~~~~~~l~~l~~~~  464 (503)
                      +++|+.|++++|++.+. .+ ....++.++.+++.+
T Consensus       236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence            77888888888887732 22 223345556666653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=5.8e-27  Score=220.99  Aligned_cols=243  Identities=20%  Similarity=0.221  Sum_probs=203.9

Q ss_pred             cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833          216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE  295 (503)
Q Consensus       216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  295 (503)
                      .++..+++.+.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            34555566666655555566778899999999999998877889999999999999999986554  8899999999999


Q ss_pred             CCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCccccc
Q 040833          296 ENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQ  375 (503)
Q Consensus       296 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  375 (503)
                      +|.+.+..     ..++|++|++++|.+.+..+..   ++.+ ++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L-~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGK-KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSC-EEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCC-CEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            99988443     3489999999999998654443   4556 9999999999988787889999999999999999977


Q ss_pred             CCccc-cCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCcc
Q 040833          376 IPSSI-GSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVF  454 (503)
Q Consensus       376 ~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  454 (503)
                      .+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|++++. +..+..+++|++|++++|++++.++....+
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l  236 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFS  236 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCC
T ss_pred             cHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchhhHhhcC
Confidence            66666 4789999999999999855 33 33589999999999999955 445889999999999999999776666778


Q ss_pred             CCCCceeccCCCCCcccC
Q 040833          455 SNSSAISIDGNDNLCGGI  472 (503)
Q Consensus       455 ~~l~~l~~~~n~~~c~~~  472 (503)
                      ++|+.+++++|++.|+++
T Consensus       237 ~~L~~L~l~~N~~~~~~~  254 (317)
T 3o53_A          237 QNLEHFDLRGNGFHCGTL  254 (317)
T ss_dssp             TTCCEEECTTCCCBHHHH
T ss_pred             CCCCEEEccCCCccCcCH
Confidence            999999999999998765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=4.6e-29  Score=256.98  Aligned_cols=398  Identities=14%  Similarity=0.077  Sum_probs=280.0

Q ss_pred             CCCCCCcEEEcccCcCCCCCCcccC-CCCCCCEEECCCC-ccccC-CCccccCCCCCCEEEcccceeeeeCCccc----c
Q 040833           13 GSLSKLRILAMHRNNLSGEIPSSFG-NLSSLEALSASAN-QFVGQ-IPETLSQLKRMLYLLLGVNKLSGEIPFSI----Y   85 (503)
Q Consensus        13 ~~~~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~   85 (503)
                      ..+++|++|++++|.+++..+..+. .+++|++|++++| .+... ++..+..+++|++|++++|.+....+..+    .
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            5789999999999998876666665 6899999999999 55432 34445689999999999999875444333    3


Q ss_pred             CCCCCcEEEccCCC--CcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCc-------CcccCCCc
Q 040833           86 NLSSLNYICVPVNQ--LQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNG-------FSGKVPSL  156 (503)
Q Consensus        86 ~l~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-------~~~~~~~l  156 (503)
                      .+++|++|+++++.  +.......+...+++|++|++++|.....++..+..+++|++|++..+.       +.+..+.+
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l  261 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL  261 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence            77899999999986  3222223333347999999999984333477778899999999976553       22323346


Q ss_pred             cCCCCCcEE-EcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchh-HhhccccCcEEEeeccccccc-cch
Q 040833          157 KILHKLEWV-GISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEA-VGNLSTRLRILIVGNNQLFGN-IPS  233 (503)
Q Consensus       157 ~~l~~L~~L-~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~  233 (503)
                      ..+++|+.+ .+.....       ..+...+..+++|++|++++|.+.+..... +... ++|++|++++| +.+. .+.
T Consensus       262 ~~~~~L~~Ls~~~~~~~-------~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~-~~L~~L~l~~~-~~~~~l~~  332 (594)
T 2p1m_B          262 SGCKELRCLSGFWDAVP-------AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC-PKLQRLWVLDY-IEDAGLEV  332 (594)
T ss_dssp             HTCTTCCEEECCBTCCG-------GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC-TTCCEEEEEGG-GHHHHHHH
T ss_pred             hcCCCcccccCCcccch-------hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC-CCcCEEeCcCc-cCHHHHHH
Confidence            788899988 3332211       123333446789999999999876443333 3344 48999999998 4332 233


Q ss_pred             hccCCCCCcEEEccC---------CcccccCCccc-cCCCCCCEEEccCCcccccCCcccc-CCCCCCEEEcc--C----
Q 040833          234 GLRNLVNLEFLHLGG---------NQFTGRIPGSI-VDLYKLQRLALEGNKFWGEIPSSIG-NLTLLITLNFE--E----  296 (503)
Q Consensus       234 ~~~~~~~L~~L~ls~---------n~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~--~----  296 (503)
                      ....+++|++|++++         +.+++.....+ ..+++|+.|.+..+.+++.....+. .+++|+.|+++  +    
T Consensus       333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~  412 (594)
T 2p1m_B          333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP  412 (594)
T ss_dssp             HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC
T ss_pred             HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc
Confidence            334689999999944         34443222223 3478999999988888765544443 58999999999  3    


Q ss_pred             CcCcccC-----CccccCCCCCCEEECcCCcCcccCCcchhc-cccccceeEccCCCCccCCCcch-hcCCCCCeEeCCC
Q 040833          297 NMLEGSI-----PSSLGKCQNLISLNLSNNNLSGTIPTEVIG-LSSLSIYLDLSQNQLNGPLPSNF-GILKNLGAIDISE  369 (503)
Q Consensus       297 n~~~~~~-----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~l~~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~  369 (503)
                      +.++...     +..+..+++|++|++++ .+++.....+.. ++.+ +.|++++|.+++.....+ ..+++|++|++++
T Consensus       413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L-~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~  490 (594)
T 2p1m_B          413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKM-EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD  490 (594)
T ss_dssp             CTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTC-CEEEEESCCSSHHHHHHHHHHCTTCCEEEEES
T ss_pred             ccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhc-cEeeccCCCCcHHHHHHHHhcCCCcCEEECcC
Confidence            3444221     12256789999999987 666555555555 6666 999999999976554444 6689999999999


Q ss_pred             CcccccCCc-cccCCCCCCEEECCCCcCcccCchhc-cCCCCCCEEeCCCCccc
Q 040833          370 NKLSGQIPS-SIGSCTRLEQLVMNGNFFQGNIPSSL-SSLRGIENLDLSRNNLS  421 (503)
Q Consensus       370 n~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~  421 (503)
                      |.+++.... .+..+++|+.|++++|+++......+ ..+++|+...+..+.-.
T Consensus       491 n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~  544 (594)
T 2p1m_B          491 CPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP  544 (594)
T ss_dssp             CSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred             CCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence            999754433 44568999999999999975544445 56788887777766543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.8e-26  Score=230.10  Aligned_cols=242  Identities=19%  Similarity=0.163  Sum_probs=188.3

Q ss_pred             cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833          216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE  295 (503)
Q Consensus       216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  295 (503)
                      +|++|++++|.+.+..+..|..+++|++|++++|.+++..+  +..+++|++|++++|.+++..     ..++|++|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence            78888888888877777778888888888888888875544  778888888888888877443     23788888888


Q ss_pred             CCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchh-cCCCCCeEeCCCCcccc
Q 040833          296 ENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFG-ILKNLGAIDISENKLSG  374 (503)
Q Consensus       296 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~  374 (503)
                      +|.+.+..+.   .+++|++|++++|.+.+..|..+..++.+ +.|++++|.+++..+..+. .+++|++|++++|.+++
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE-EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC-CEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            8888765543   35788899999998887777778888888 8899999998877777665 68899999999999886


Q ss_pred             cCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCccc-CC-CCC
Q 040833          375 QIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGE-VP-IKG  452 (503)
Q Consensus       375 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~-~~~  452 (503)
                      ..+  +..+++|+.|+|++|.+++.. ..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.+. .| ...
T Consensus       184 ~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~  259 (487)
T 3oja_A          184 VKG--QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (487)
T ss_dssp             EEC--CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred             ccc--cccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence            533  335889999999999998654 448888999999999999984 566788889999999999998843 22 233


Q ss_pred             ccCCCCceecc-------CCCCCcccC
Q 040833          453 VFSNSSAISID-------GNDNLCGGI  472 (503)
Q Consensus       453 ~~~~l~~l~~~-------~n~~~c~~~  472 (503)
                      .++.++.+++.       .+++.|.+.
T Consensus       260 ~l~~L~~l~~~~~~~~~~~~~~~c~~~  286 (487)
T 3oja_A          260 KNQRVQTVAKQTVKKLTGQNEEECTVP  286 (487)
T ss_dssp             TCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred             hCCCCcEEeccccccccCCCcccccCC
Confidence            45566666665       778888664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=2.2e-25  Score=206.13  Aligned_cols=211  Identities=20%  Similarity=0.194  Sum_probs=139.1

Q ss_pred             CCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECc
Q 040833          240 NLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLS  319 (503)
Q Consensus       240 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  319 (503)
                      ++++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            45555555555554444455555555555555555554444455555555555555555555555555555666666666


Q ss_pred             CCcCcccCCcchhccccccceeEccCCCCccC-CCcchhcCCCCCeEeCCCCcccccCCccccCCCCCC----EEECCCC
Q 040833          320 NNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGP-LPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLE----QLVMNGN  394 (503)
Q Consensus       320 ~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~----~L~L~~n  394 (503)
                      +|.+.+..+..+..++.+ ++|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|+    .|++++|
T Consensus       109 ~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTL-KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTC-CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCccccCchhcccCCCC-CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            665554433345555555 5666666666542 466677788888888888888876666666666666    8899999


Q ss_pred             cCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCC
Q 040833          395 FFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKG  452 (503)
Q Consensus       395 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  452 (503)
                      .+++..+..+.. .+|++|++++|++++..+..|..+++|++|++++|++.+.++...
T Consensus       188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~  244 (276)
T 2z62_A          188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  244 (276)
T ss_dssp             CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred             cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence            888665555543 489999999999987777778889999999999999998877543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=3.1e-26  Score=228.39  Aligned_cols=246  Identities=20%  Similarity=0.201  Sum_probs=207.9

Q ss_pred             CCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCE
Q 040833          188 NASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQR  267 (503)
Q Consensus       188 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~  267 (503)
                      .+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+..+  +..+++|++|++++|.+++..     ..++|+.
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~  103 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET  103 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence            345899999999999987788888886 89999999999886554  889999999999999988532     3389999


Q ss_pred             EEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchh-ccccccceeEccCC
Q 040833          268 LALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVI-GLSSLSIYLDLSQN  346 (503)
Q Consensus       268 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~l~~~L~l~~n  346 (503)
                      |++++|.+.+..+.   .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+. .++.+ +.|++++|
T Consensus       104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L-~~L~Ls~N  179 (487)
T 3oja_A          104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYN  179 (487)
T ss_dssp             EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTS
T ss_pred             EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-cEEecCCC
Confidence            99999999866544   468899999999999988888899999999999999999987787776 67777 99999999


Q ss_pred             CCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccc-cccC
Q 040833          347 QLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS-GRIP  425 (503)
Q Consensus       347 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~  425 (503)
                      .+++..+  +..+++|++|++++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +..|
T Consensus       180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          180 FIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             CCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred             ccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence            9986632  3458999999999999996544 58899999999999999994 6778999999999999999998 5567


Q ss_pred             ccCcCCCCCCeeecC-------CCcCcccCC
Q 040833          426 KYLENFPFLQNLNLS-------FNHFEGEVP  449 (503)
Q Consensus       426 ~~~~~~~~L~~L~l~-------~n~l~~~~~  449 (503)
                      ..+..++.|+.++++       .++..+..+
T Consensus       256 ~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~  286 (487)
T 3oja_A          256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVP  286 (487)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred             HHHHhCCCCcEEeccccccccCCCcccccCC
Confidence            778888999999986       555555444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=1.9e-24  Score=198.89  Aligned_cols=206  Identities=22%  Similarity=0.253  Sum_probs=150.5

Q ss_pred             CCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECc
Q 040833          240 NLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLS  319 (503)
Q Consensus       240 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  319 (503)
                      ..+.++++++.++. +|..+.  +.++.|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            35566666666652 333332  456666666666665555566666677777777666665555556666777777777


Q ss_pred             CCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCccc
Q 040833          320 NNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGN  399 (503)
Q Consensus       320 ~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~  399 (503)
                      +|.+.+..+..+..++.+ ++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+++.
T Consensus        94 ~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNL-AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcCCcCCHhHcccccCC-CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            776664444455566666 6777777777766666677888899999999988866666788889999999999998877


Q ss_pred             CchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833          400 IPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       400 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  449 (503)
                      .+..|..+++|++|++++|+++...+..|..+++|+.|++++|++.+.++
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            77778888999999999999987777778888999999999999988775

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=1.3e-24  Score=201.74  Aligned_cols=207  Identities=22%  Similarity=0.221  Sum_probs=170.0

Q ss_pred             ccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 040833          235 LRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLI  314 (503)
Q Consensus       235 ~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  314 (503)
                      +..++++++++++++.++. +|..+.  +.++.|++++|.+++..+..|..+++|++|++++|.++...+.  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            5677889999999998884 444443  6899999999999887788889999999999999998865443  6788999


Q ss_pred             EEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCC
Q 040833          315 SLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGN  394 (503)
Q Consensus       315 ~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  394 (503)
                      +|++++|.+. .+|..+..++.+ ++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L-~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTC-CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCC-cCchhhccCCCC-CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            9999999987 677777778888 88899999888777777888888889999888888777777788888888999888


Q ss_pred             cCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833          395 FFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       395 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  449 (503)
                      ++++..+..|..+++|++|++++|+++ .+|..+...++|+.+++++|++.+.+.
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence            888666667788888888898888888 556666677788888888888887664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1e-24  Score=201.69  Aligned_cols=224  Identities=21%  Similarity=0.198  Sum_probs=191.4

Q ss_pred             EEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcC
Q 040833          244 LHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNL  323 (503)
Q Consensus       244 L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  323 (503)
                      ++-.+..+. ..|..+.  +.+++|++++|.+++..+..|..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus        12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            444444444 3444443  5799999999999988777899999999999999999988888899999999999999999


Q ss_pred             cccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCccccc-CCccccCCCCCCEEECCCCcCcccCch
Q 040833          324 SGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQ-IPSSIGSCTRLEQLVMNGNFFQGNIPS  402 (503)
Q Consensus       324 ~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~  402 (503)
                      .+..+..+..++++ ++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+.
T Consensus        89 ~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A           89 QSLALGAFSGLSSL-QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             CEECTTTTTTCTTC-CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CccChhhhcCCccc-cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence            97777888899999 9999999999987777799999999999999999864 588999999999999999999987777


Q ss_pred             hccCCCCCC----EEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC-CCccCCCCceeccCCCCCcccC
Q 040833          403 SLSSLRGIE----NLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KGVFSNSSAISIDGNDNLCGGI  472 (503)
Q Consensus       403 ~~~~l~~L~----~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~l~~~~n~~~c~~~  472 (503)
                      .+..+++|+    +|++++|+++...+..+.. .+|++|++++|.+++..+. ...+++|+.+++++||+.|+|.
T Consensus       168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             GGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             HhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            777777777    8999999999776666654 4899999999999976653 3568899999999999999763

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=6.7e-24  Score=215.68  Aligned_cols=268  Identities=25%  Similarity=0.329  Sum_probs=185.9

Q ss_pred             CCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEc
Q 040833           16 SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICV   95 (503)
Q Consensus        16 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l   95 (503)
                      .++++|++++|.++ .+|..+.  ++|++|++++|.+.. +|.   .+++|++|++++|+++ .+|.   .+++|++|++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence            35889999999998 6677665  789999999998884 454   5688999999999987 4554   6788999999


Q ss_pred             cCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCC
Q 040833           96 PVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNG  175 (503)
Q Consensus        96 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~  175 (503)
                      ++|.+. .+|.    .+++|+.|++++|.++ .+|..   +++|++|++++|.+.....   ...+|+.|++++|.++..
T Consensus       109 s~N~l~-~l~~----~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l  176 (622)
T 3g06_A          109 FSNPLT-HLPA----LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSL  176 (622)
T ss_dssp             CSCCCC-CCCC----CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC
T ss_pred             cCCcCC-CCCC----CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCC
Confidence            999887 5665    3788999999999887 35543   4788888888888765432   346778888888777642


Q ss_pred             CCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccC
Q 040833          176 KKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRI  255 (503)
Q Consensus       176 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~  255 (503)
                      .          ..+++|+.|++++|.+.+ +|.    .+++|+.|.+++|.+.. ++.   .+++|++|++++|.+++ +
T Consensus       177 ~----------~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-l  236 (622)
T 3g06_A          177 P----------MLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-L  236 (622)
T ss_dssp             C----------CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred             c----------ccCCCCcEEECCCCCCCC-CCC----ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-C
Confidence            2          234677778887777764 222    12467777777777663 222   23667777777777664 3


Q ss_pred             CccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhcc
Q 040833          256 PGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGL  334 (503)
Q Consensus       256 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  334 (503)
                      |   ..+++|+.|++++|.++. .|.   .+++|++|++++|.++ .+|..+..+++|+.|++++|++.+..+..+..+
T Consensus       237 p---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          237 P---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             C---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence            3   344667777777777663 232   4566777777777776 445566667777777777777765555544443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=3e-24  Score=197.58  Aligned_cols=205  Identities=20%  Similarity=0.203  Sum_probs=181.3

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEc
Q 040833          264 KLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDL  343 (503)
Q Consensus       264 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l  343 (503)
                      ..+.++++++.++. .|..+.  +.+++|++++|.+....+..+..+++|++|++++|.+....+..+..++.+ ++|++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L-~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL-ETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC-CEEEC
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCC-CEEEC
Confidence            57899999999984 454443  689999999999998877889999999999999999985555556778888 99999


Q ss_pred             cCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccc
Q 040833          344 SQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGR  423 (503)
Q Consensus       344 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  423 (503)
                      ++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|+++..
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            99999987777889999999999999999988888899999999999999999977777799999999999999999988


Q ss_pred             cCccCcCCCCCCeeecCCCcCcccCCC-CCccCCCCceeccCCCCCcccC
Q 040833          424 IPKYLENFPFLQNLNLSFNHFEGEVPI-KGVFSNSSAISIDGNDNLCGGI  472 (503)
Q Consensus       424 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~l~~~~n~~~c~~~  472 (503)
                      .+..|..+++|++|++++|++++..+. ...+++|+.+++++||+.|+|-
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            888899999999999999999976653 4557899999999999999863

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.2e-26  Score=218.42  Aligned_cols=244  Identities=22%  Similarity=0.242  Sum_probs=198.3

Q ss_pred             ccCcEEEeeccccccccchhccCCCCCcEEEccCCccc-ccCCcccc-------CCCCCCEEEccCCcccccCCccc--c
Q 040833          215 TRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFT-GRIPGSIV-------DLYKLQRLALEGNKFWGEIPSSI--G  284 (503)
Q Consensus       215 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~-~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~~--~  284 (503)
                      .+++.+++++|.+  ..|..+...  |+.|++++|.+. ...+..+.       .+++|++|++++|.+++..|..+  .
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            3789999999988  455544433  889999999884 34454444       68999999999999998777765  8


Q ss_pred             CCCCCCEEEccCCcCcccCCccccCC-----CCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccC--CCcc--
Q 040833          285 NLTLLITLNFEENMLEGSIPSSLGKC-----QNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGP--LPSN--  355 (503)
Q Consensus       285 ~~~~L~~L~l~~n~~~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~--~~~~--  355 (503)
                      .+++|++|++++|.+.+. +..+..+     ++|++|++++|.+.+..+..+..++++ ++|++++|.+.+.  .+..  
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL-STLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC-CEEECCSCTTCHHHHHHHHSC
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC-CEEECCCCCcCcchHHHHHHH
Confidence            999999999999999976 6666665     899999999999997777889999999 9999999997653  2222  


Q ss_pred             hhcCCCCCeEeCCCCcccc---cCCccccCCCCCCEEECCCCcCcccCc-hhccCCCCCCEEeCCCCccccccCccCcCC
Q 040833          356 FGILKNLGAIDISENKLSG---QIPSSIGSCTRLEQLVMNGNFFQGNIP-SSLSSLRGIENLDLSRNNLSGRIPKYLENF  431 (503)
Q Consensus       356 ~~~~~~L~~L~l~~n~l~~---~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  431 (503)
                      +..+++|++|++++|.+++   .....+..+++|++|++++|.+++..+ ..+..+++|++|++++|+++ .+|..+.  
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--  273 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--  273 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence            3788999999999999983   222345678999999999999997664 55667899999999999999 5566555  


Q ss_pred             CCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCC
Q 040833          432 PFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNL  468 (503)
Q Consensus       432 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~  468 (503)
                      ++|++|++++|++++. |....+++|+.+++++|+..
T Consensus       274 ~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          274 AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred             CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence            8999999999999977 55677888889999888754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=1.7e-23  Score=212.77  Aligned_cols=182  Identities=28%  Similarity=0.287  Sum_probs=84.6

Q ss_pred             cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833          216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE  295 (503)
Q Consensus       216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  295 (503)
                      +|+.|++++|.+.. +|.   .+++|++|++++|.+++. |.   .+++|+.|++++|.++.. |   ..+++|+.|+++
T Consensus       122 ~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls  189 (622)
T 3g06_A          122 GLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVS  189 (622)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECC
T ss_pred             CcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECC
Confidence            44444444444442 121   124555555555555422 21   233455555555555432 2   234555555555


Q ss_pred             CCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCccccc
Q 040833          296 ENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQ  375 (503)
Q Consensus       296 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  375 (503)
                      +|.+.+. +.   ..++|+.|++++|.+. .+|..   .+++ +.|++++|.+++ ++   ..+++|++|++++|.++ .
T Consensus       190 ~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L-~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~  255 (622)
T 3g06_A          190 DNQLASL-PT---LPSELYKLWAYNNRLT-SLPAL---PSGL-KELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-S  255 (622)
T ss_dssp             SSCCSCC-CC---CCTTCCEEECCSSCCS-SCCCC---CTTC-CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-C
T ss_pred             CCCCCCC-CC---ccchhhEEECcCCccc-ccCCC---CCCC-CEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-c
Confidence            5555532 11   1245555555555554 22221   1223 455555555543 22   22345555555555554 2


Q ss_pred             CCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCcc
Q 040833          376 IPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKY  427 (503)
Q Consensus       376 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  427 (503)
                      +|.   .+++|+.|++++|.++ .+|..+..+++|+.|+|++|++++..+..
T Consensus       256 lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~  303 (622)
T 3g06_A          256 LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  303 (622)
T ss_dssp             CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred             CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence            332   3445555555555555 34455555555555555555555444433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=8.5e-24  Score=196.15  Aligned_cols=197  Identities=21%  Similarity=0.233  Sum_probs=92.3

Q ss_pred             cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833          216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE  295 (503)
Q Consensus       216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  295 (503)
                      ++++++++++.+.. +|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+++..+.  ..+++|++|+++
T Consensus        11 ~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls   85 (290)
T 1p9a_G           11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS   85 (290)
T ss_dssp             TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred             CccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence            44555555544442 222221  3445555555555444444445555555555555554433221  344555555555


Q ss_pred             CCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCccccc
Q 040833          296 ENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQ  375 (503)
Q Consensus       296 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  375 (503)
                      +|.+. ..+..+..+++|++|++++|++++..+..+..++.+ ++|++++|++++..+..|..+++|++|++++|++++.
T Consensus        86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             CCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC-CEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence            55544 233344445555555555555543333444444444 4555555555544444444455555555555555433


Q ss_pred             CCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCcc
Q 040833          376 IPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL  420 (503)
Q Consensus       376 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  420 (503)
                      .+..|..+++|+.|++++|.++ .+|..+..+++|+.|+|++|++
T Consensus       164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence            3334444555555555555554 3334444444555555555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=7.2e-23  Score=188.48  Aligned_cols=202  Identities=25%  Similarity=0.273  Sum_probs=139.6

Q ss_pred             cCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 040833          236 RNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLIS  315 (503)
Q Consensus       236 ~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  315 (503)
                      ..+++|+.|+++++.+...  ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            4456677777777766532  2456667777777777776642  35666777777777777777666666677777777


Q ss_pred             EECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCc
Q 040833          316 LNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF  395 (503)
Q Consensus       316 L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~  395 (503)
                      |++++|.+.+..+..+..++.+ ++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNL-TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCccCHHHhccCCCC-CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence            7777777765444555566666 667777776665555556677778888888887776666667777788888888888


Q ss_pred             CcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833          396 FQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       396 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  449 (503)
                      +++..+..+..+++|++|++++|++..       .+++|+.+++..|.+.+..|
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip  239 (272)
T 3rfs_A          193 LKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVR  239 (272)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBB
T ss_pred             CCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCccc
Confidence            777666667777888888888887652       34567778888887777666

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=3.5e-24  Score=205.92  Aligned_cols=251  Identities=16%  Similarity=0.176  Sum_probs=153.2

Q ss_pred             EECcCCcccccCchhHhhccccCcEEEeeccccccccc----hhccCCC-CCcEEEccCCcccccCCccccCC-----CC
Q 040833          195 LQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIP----SGLRNLV-NLEFLHLGGNQFTGRIPGSIVDL-----YK  264 (503)
Q Consensus       195 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~ls~n~~~~~~~~~~~~~-----~~  264 (503)
                      .+++++.+.+..|..+ ..+.++++|++++|.+.+..+    ..+..++ +|++|++++|.+.+..+..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            3455555554444433 233356666666666655444    4555566 67777777776665544444443     66


Q ss_pred             CCEEEccCCcccccCCcc----ccCC-CCCCEEEccCCcCcccCCccc----cC-CCCCCEEECcCCcCcccCCc----c
Q 040833          265 LQRLALEGNKFWGEIPSS----IGNL-TLLITLNFEENMLEGSIPSSL----GK-CQNLISLNLSNNNLSGTIPT----E  330 (503)
Q Consensus       265 L~~L~l~~n~~~~~~~~~----~~~~-~~L~~L~l~~n~~~~~~~~~~----~~-~~~L~~L~l~~n~~~~~~~~----~  330 (503)
                      |++|++++|.+++..+..    +..+ ++|++|++++|.+.+..+..+    .. +++|++|++++|.+.+....    .
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            777777777766544432    3333 677777777777765444332    23 35777777777777643332    2


Q ss_pred             hhccc-cccceeEccCCCCccCCCcchh----cC-CCCCeEeCCCCccccc----CCccccC-CCCCCEEECCCCcCccc
Q 040833          331 VIGLS-SLSIYLDLSQNQLNGPLPSNFG----IL-KNLGAIDISENKLSGQ----IPSSIGS-CTRLEQLVMNGNFFQGN  399 (503)
Q Consensus       331 ~~~~~-~l~~~L~l~~n~l~~~~~~~~~----~~-~~L~~L~l~~n~l~~~----~~~~~~~-~~~L~~L~L~~n~l~~~  399 (503)
                      +...+ .+ ++|++++|.+++..+..+.    .+ ++|++|++++|.+++.    ++..+.. .++|++|++++|.+++.
T Consensus       162 l~~~~~~L-~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          162 LAAIPANV-NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHTSCTTC-CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HhcCCccc-cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            33344 44 7777777777765544333    33 5788888888887752    3334444 45788888888888765


Q ss_pred             Cc----hhccCCCCCCEEeCCCCccccc-------cCccCcCCCCCCeeecCCCcCccc
Q 040833          400 IP----SSLSSLRGIENLDLSRNNLSGR-------IPKYLENFPFLQNLNLSFNHFEGE  447 (503)
Q Consensus       400 ~~----~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~~~~L~~L~l~~n~l~~~  447 (503)
                      .+    ..+..+++|++|++++|.+...       .+..+..+++|+.||+++|++...
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            44    3346678888888888874322       334566777888888888887755

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=9.1e-23  Score=184.18  Aligned_cols=196  Identities=13%  Similarity=0.093  Sum_probs=98.2

Q ss_pred             CCcEEEccCCcccccCCccccCCCCCCEEEccCCc-ccccCCccccCCCCCCEEEccC-CcCcccCCccccCCCCCCEEE
Q 040833          240 NLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNK-FWGEIPSSIGNLTLLITLNFEE-NMLEGSIPSSLGKCQNLISLN  317 (503)
Q Consensus       240 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~  317 (503)
                      ++++|++++|.+++..+..|..+++|++|++++|. ++...+..|..+++|++|++++ |.+....+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            44555555555444444444445555555555553 4434344445555555555554 445444444445555555555


Q ss_pred             CcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCC---eEeCCCC-cccccCCccccCCCCCC-EEECC
Q 040833          318 LSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLG---AIDISEN-KLSGQIPSSIGSCTRLE-QLVMN  392 (503)
Q Consensus       318 l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~~~~L~-~L~L~  392 (503)
                      +++|.+.+ +|.                          |..+++|+   +|++++| .+++..+..|..+++|+ .|+++
T Consensus       112 l~~n~l~~-lp~--------------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~  164 (239)
T 2xwt_C          112 IFNTGLKM-FPD--------------------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY  164 (239)
T ss_dssp             EEEECCCS-CCC--------------------------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred             CCCCCCcc-ccc--------------------------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence            55554442 222                          33333343   5555555 55544444555555555 55555


Q ss_pred             CCcCcccCchhccCCCCCCEEeCCCCc-cccccCccCcCC-CCCCeeecCCCcCcccCCCCCccCCCCceeccCC
Q 040833          393 GNFFQGNIPSSLSSLRGIENLDLSRNN-LSGRIPKYLENF-PFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGN  465 (503)
Q Consensus       393 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n  465 (503)
                      +|.++...+..|.. ++|++|++++|+ ++...+..|..+ ++|+.|++++|++++..+  ..+++++.|++.++
T Consensus       165 ~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~--~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          165 NNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS--KGLEHLKELIARNT  236 (239)
T ss_dssp             SCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC--TTCTTCSEEECTTC
T ss_pred             CCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh--hHhccCceeeccCc
Confidence            55555333333333 556666666663 554445555555 566666666666554333  14555666655544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=7.7e-23  Score=192.21  Aligned_cols=201  Identities=22%  Similarity=0.223  Sum_probs=121.4

Q ss_pred             CCCcEEEccCCcccccCCccc--cCCCCCCEEEccCCcccccCC----ccccCCCCCCEEEccCCcCcccCCccccCCCC
Q 040833          239 VNLEFLHLGGNQFTGRIPGSI--VDLYKLQRLALEGNKFWGEIP----SSIGNLTLLITLNFEENMLEGSIPSSLGKCQN  312 (503)
Q Consensus       239 ~~L~~L~ls~n~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  312 (503)
                      ++|++|++++|.+.+..+..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+....+..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            345666666665555555554  555666666666666554322    22335666666666666666555566666666


Q ss_pred             CCEEECcCCcCccc--C--CcchhccccccceeEccCCCCccCCCc----chhcCCCCCeEeCCCCcccccCCccccCC-
Q 040833          313 LISLNLSNNNLSGT--I--PTEVIGLSSLSIYLDLSQNQLNGPLPS----NFGILKNLGAIDISENKLSGQIPSSIGSC-  383 (503)
Q Consensus       313 L~~L~l~~n~~~~~--~--~~~~~~~~~l~~~L~l~~n~l~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-  383 (503)
                      |++|++++|++.+.  .  +..+..++.+ ++|++++|.++.. +.    .+..+++|++|++++|.+++..|..+..+ 
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~~l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAI-QNLALRNTGMETP-TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCC-CSCBCCSSCCCCH-HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCC-CEEECCCCCCCch-HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            66666666665421  1  1222344455 5666666666421 11    24566777777777777776656555555 


Q ss_pred             --CCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcc
Q 040833          384 --TRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEG  446 (503)
Q Consensus       384 --~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  446 (503)
                        ++|++|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|+.|++++|+++.
T Consensus       249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence              57777777777777 4455443  6777777777777743 22 5667777777777777763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=9.6e-23  Score=184.02  Aligned_cols=175  Identities=16%  Similarity=0.137  Sum_probs=121.5

Q ss_pred             CCCEEEccCCcCcccCCccccCCCCCCEEECcCCc-CcccCCcchhccccccceeEccC-CCCccCCCcchhcCCCCCeE
Q 040833          288 LLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNN-LSGTIPTEVIGLSSLSIYLDLSQ-NQLNGPLPSNFGILKNLGAI  365 (503)
Q Consensus       288 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~l~~~L~l~~-n~l~~~~~~~~~~~~~L~~L  365 (503)
                      ++++|++++|.+++..+..+..+++|++|++++|+ +....+..+..++++ ++|++++ |.++...+..|..+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L-~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV-THIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTC-CEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCC-cEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            44455555555444444444455555555555554 443333344445555 5555555 55554555667788999999


Q ss_pred             eCCCCcccccCCccccCCCCCC---EEECCCC-cCcccCchhccCCCCCC-EEeCCCCccccccCccCcCCCCCCeeecC
Q 040833          366 DISENKLSGQIPSSIGSCTRLE---QLVMNGN-FFQGNIPSSLSSLRGIE-NLDLSRNNLSGRIPKYLENFPFLQNLNLS  440 (503)
Q Consensus       366 ~l~~n~l~~~~~~~~~~~~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  440 (503)
                      ++++|.+++ +|. +..+++|+   +|++++| .+++..+..|.++++|+ +|++++|+++...+..|.. ++|++|+++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence            999999985 555 88888888   9999999 99877777899999999 9999999999666666666 899999999


Q ss_pred             CCc-CcccCCC-CCcc-CCCCceeccCCC
Q 040833          441 FNH-FEGEVPI-KGVF-SNSSAISIDGND  466 (503)
Q Consensus       441 ~n~-l~~~~~~-~~~~-~~l~~l~~~~n~  466 (503)
                      +|+ ++...+. ...+ ++|+.+++++|+
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~  216 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTS  216 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCc
Confidence            995 8866542 3344 677777776653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=4.1e-24  Score=207.58  Aligned_cols=241  Identities=18%  Similarity=0.231  Sum_probs=153.1

Q ss_pred             chhHhhccccCcEEEeeccccccccc----hhccCCCCCcEEEccCCcc---cccCCcc-------ccCCCCCCEEEccC
Q 040833          207 PEAVGNLSTRLRILIVGNNQLFGNIP----SGLRNLVNLEFLHLGGNQF---TGRIPGS-------IVDLYKLQRLALEG  272 (503)
Q Consensus       207 ~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~ls~n~~---~~~~~~~-------~~~~~~L~~L~l~~  272 (503)
                      +..+...+ +|++|++++|.+....+    ..+..+++|++|++++|.+   .+..|..       +..+++|++|++++
T Consensus        25 ~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           25 FAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             SHHHHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHhcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            33444443 55666666555544322    2345566666666666532   2222322       25666777777777


Q ss_pred             Ccccc----cCCccccCCCCCCEEEccCCcCcccCCccc----cCC---------CCCCEEECcCCcCcc-cCC---cch
Q 040833          273 NKFWG----EIPSSIGNLTLLITLNFEENMLEGSIPSSL----GKC---------QNLISLNLSNNNLSG-TIP---TEV  331 (503)
Q Consensus       273 n~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~----~~~---------~~L~~L~l~~n~~~~-~~~---~~~  331 (503)
                      |.+.+    ..+..+..+++|++|++++|.+....+..+    ..+         ++|++|++++|++.. ..+   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            76664    234455666777777777777653332222    222         677777777777752 222   244


Q ss_pred             hccccccceeEccCCCCcc-----CCCcchhcCCCCCeEeCCCCccc----ccCCccccCCCCCCEEECCCCcCccc---
Q 040833          332 IGLSSLSIYLDLSQNQLNG-----PLPSNFGILKNLGAIDISENKLS----GQIPSSIGSCTRLEQLVMNGNFFQGN---  399 (503)
Q Consensus       332 ~~~~~l~~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~L~~n~l~~~---  399 (503)
                      ..++.+ ++|++++|.++.     ..+..+..+++|++|++++|.++    ..++..+..+++|++|+|++|.+++.   
T Consensus       184 ~~~~~L-~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          184 QSHRLL-HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHCTTC-CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HhCCCc-CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            455666 777777777763     22225667888888888888885    45666778888888888888888754   


Q ss_pred             -Cchhcc--CCCCCCEEeCCCCcccc----ccCccC-cCCCCCCeeecCCCcCcccCC
Q 040833          400 -IPSSLS--SLRGIENLDLSRNNLSG----RIPKYL-ENFPFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       400 -~~~~~~--~l~~L~~L~L~~n~l~~----~~~~~~-~~~~~L~~L~l~~n~l~~~~~  449 (503)
                       ++..+.  .+++|++|+|++|.++.    .++..+ .++++|++|++++|++++..+
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence             455553  37888999999888886    355555 567888999999888886553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=8.6e-22  Score=181.27  Aligned_cols=211  Identities=22%  Similarity=0.184  Sum_probs=176.7

Q ss_pred             cEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCC
Q 040833          242 EFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNN  321 (503)
Q Consensus       242 ~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  321 (503)
                      ..+++..+.+.+.  .....+++|+.|++++|.+...  ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|
T Consensus        22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN   95 (272)
T ss_dssp             HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred             HHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence            3445555554432  3455778999999999998743  3578899999999999999853  47889999999999999


Q ss_pred             cCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCc
Q 040833          322 NLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIP  401 (503)
Q Consensus       322 ~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  401 (503)
                      .+.+..+..+..++.+ ++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus        96 ~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  174 (272)
T 3rfs_A           96 QLQSLPNGVFDKLTNL-KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE  174 (272)
T ss_dssp             CCCCCCTTTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ccCccChhHhcCCcCC-CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence            9997666777888888 999999999998777778999999999999999997777778999999999999999998877


Q ss_pred             hhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCC
Q 040833          402 SSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGN  465 (503)
Q Consensus       402 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n  465 (503)
                      ..|..+++|++|++++|++++..+..+..+++|+.|++++|++.+.+|      +++.+++.+|
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~------~l~~l~~~~n  232 (272)
T 3rfs_A          175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP------GIRYLSEWIN  232 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT------TTHHHHHHHH
T ss_pred             HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc------HHHHHHHHHH
Confidence            788999999999999999998888889999999999999999997665      4555555443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1e-21  Score=178.63  Aligned_cols=159  Identities=23%  Similarity=0.233  Sum_probs=104.6

Q ss_pred             CCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeC
Q 040833          288 LLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDI  367 (503)
Q Consensus       288 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  367 (503)
                      .++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++.+ ++|++++|.+++..+..|..+++|++|++
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL-GTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC-CEEECCCCcccccChhHhcccCCCCEEEc
Confidence            34444444444443333344444444444444444443333334444444 45555555555444455667778888888


Q ss_pred             CCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCccc
Q 040833          368 SENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGE  447 (503)
Q Consensus       368 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  447 (503)
                      ++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.+.
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            88888766666677888888888888888866666788888888888888888877777788888888888888888876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=1.7e-23  Score=199.48  Aligned_cols=250  Identities=19%  Similarity=0.253  Sum_probs=171.6

Q ss_pred             CCCEEECcCCcccccCchhHhhc-cccCcEEEeeccccccccchhccCCCCCcEEEccCCccccc-CCccccCCCCCCEE
Q 040833          191 RLELLQISDNNFGGMLPEAVGNL-STRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGR-IPGSIVDLYKLQRL  268 (503)
Q Consensus       191 ~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~~~~L~~L  268 (503)
                      .++.++++++.+.   +..+..+ .+.++.++++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            3677777777655   3344443 13788888888877755444 45678888888888877654 55667777888888


Q ss_pred             EccCCcccccCCccccCCCCCCEEEccCC-cCccc-CCccccCCCCCCEEECcCC-cCccc-CCcchhccc-cccceeEc
Q 040833          269 ALEGNKFWGEIPSSIGNLTLLITLNFEEN-MLEGS-IPSSLGKCQNLISLNLSNN-NLSGT-IPTEVIGLS-SLSIYLDL  343 (503)
Q Consensus       269 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~-~l~~~L~l  343 (503)
                      ++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ ++ ++|++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L-~~L~l  202 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI-TQLNL  202 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC-CEEEC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC-CEEEe
Confidence            88888777666667777888888888888 45542 4445667788888888888 77643 455566677 66 78888


Q ss_pred             cCC--CCc-cCCCcchhcCCCCCeEeCCCCc-ccccCCccccCCCCCCEEECCCCc-CcccCchhccCCCCCCEEeCCCC
Q 040833          344 SQN--QLN-GPLPSNFGILKNLGAIDISENK-LSGQIPSSIGSCTRLEQLVMNGNF-FQGNIPSSLSSLRGIENLDLSRN  418 (503)
Q Consensus       344 ~~n--~l~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n  418 (503)
                      ++|  .++ ...+..+..+++|++|++++|. +++..+..+..+++|++|++++|. ++......+..+++|++|++++|
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            887  444 2344556678888888888887 666666677778888888888884 33333335677888888888888


Q ss_pred             ccccccCccCcCC-CCCCeeecCCCcCcccCC
Q 040833          419 NLSGRIPKYLENF-PFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       419 ~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~  449 (503)
                       +..   +.+..+ .+++.|++++|.+++..|
T Consensus       283 -i~~---~~~~~l~~~l~~L~l~~n~l~~~~~  310 (336)
T 2ast_B          283 -VPD---GTLQLLKEALPHLQINCSHFTTIAR  310 (336)
T ss_dssp             -SCT---TCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred             -cCH---HHHHHHHhhCcceEEecccCccccC
Confidence             432   223333 236667788888887665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.1e-23  Score=202.37  Aligned_cols=250  Identities=16%  Similarity=0.152  Sum_probs=193.0

Q ss_pred             EEEeeccccccccchhccCCCCCcEEEccCCcccccCC----ccccCCC-CCCEEEccCCcccccCCccccCC-----CC
Q 040833          219 ILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIP----GSIVDLY-KLQRLALEGNKFWGEIPSSIGNL-----TL  288 (503)
Q Consensus       219 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~----~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~-----~~  288 (503)
                      ...++.+.+.+..+..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            45788888888888777777789999999999997666    6788888 89999999999987766666553     99


Q ss_pred             CCEEEccCCcCcccCCcc----ccCC-CCCCEEECcCCcCcccCCcchhcc-----ccccceeEccCCCCccCCCcc---
Q 040833          289 LITLNFEENMLEGSIPSS----LGKC-QNLISLNLSNNNLSGTIPTEVIGL-----SSLSIYLDLSQNQLNGPLPSN---  355 (503)
Q Consensus       289 L~~L~l~~n~~~~~~~~~----~~~~-~~L~~L~l~~n~~~~~~~~~~~~~-----~~l~~~L~l~~n~l~~~~~~~---  355 (503)
                      |++|++++|.+.+..+..    +..+ ++|++|++++|.+.+..+..+...     ..+ ++|++++|.+++.....   
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L-~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI-TSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTC-CEEECTTSCGGGSCHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCce-eEEEccCCcCCHHHHHHHHH
Confidence            999999999998666553    4444 899999999999986655554432     355 99999999998654433   


Q ss_pred             -hhcCC-CCCeEeCCCCcccccCCc----cccCC-CCCCEEECCCCcCccc----CchhccC-CCCCCEEeCCCCccccc
Q 040833          356 -FGILK-NLGAIDISENKLSGQIPS----SIGSC-TRLEQLVMNGNFFQGN----IPSSLSS-LRGIENLDLSRNNLSGR  423 (503)
Q Consensus       356 -~~~~~-~L~~L~l~~n~l~~~~~~----~~~~~-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~L~~n~l~~~  423 (503)
                       +..++ +|++|++++|.+++..+.    .+..+ ++|++|+|++|.+++.    ++..+.. .++|++|+|++|++++.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence             34455 999999999999876654    34445 5999999999999863    3445554 46999999999999865


Q ss_pred             cC----ccCcCCCCCCeeecCCCcCcccCC--------CCCccCCCCceeccCCCCCc
Q 040833          424 IP----KYLENFPFLQNLNLSFNHFEGEVP--------IKGVFSNSSAISIDGNDNLC  469 (503)
Q Consensus       424 ~~----~~~~~~~~L~~L~l~~n~l~~~~~--------~~~~~~~l~~l~~~~n~~~c  469 (503)
                      .+    ..+..+++|++|++++|.+....+        ....+++|+.+++++|+...
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            43    446788999999999999543222        23445677888888886543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=6e-22  Score=186.09  Aligned_cols=225  Identities=19%  Similarity=0.177  Sum_probs=177.7

Q ss_pred             CCCCEEECcCCcccccCchh---HhhccccCcEEEeeccccccccchhc--cCCCCCcEEEccCCcccccCC----cccc
Q 040833          190 SRLELLQISDNNFGGMLPEA---VGNLSTRLRILIVGNNQLFGNIPSGL--RNLVNLEFLHLGGNQFTGRIP----GSIV  260 (503)
Q Consensus       190 ~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~~~~~----~~~~  260 (503)
                      ..++.+.+.++.+.......   +... ++|++|++++|.+.+..+..+  ..+++|++|++++|.+.+..+    ..+.
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            45777787777664321111   1122 369999999999988777777  889999999999999886444    3455


Q ss_pred             CCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCccc----CCccccCCCCCCEEECcCCcCcccCCc----chh
Q 040833          261 DLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGS----IPSSLGKCQNLISLNLSNNNLSGTIPT----EVI  332 (503)
Q Consensus       261 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~  332 (503)
                      .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.    .+..+..+++|++|++++|.++ ..+.    .+.
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~  221 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA  221 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence            788999999999999888888899999999999999987542    1233467899999999999997 3333    245


Q ss_pred             ccccccceeEccCCCCccCCCcchhcC---CCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCC
Q 040833          333 GLSSLSIYLDLSQNQLNGPLPSNFGIL---KNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRG  409 (503)
Q Consensus       333 ~~~~l~~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  409 (503)
                      .++.+ ++|++++|.+++..|..+..+   ++|++|++++|.++ .+|..+.  ++|++|++++|.+++. |. +..+++
T Consensus       222 ~l~~L-~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~  295 (310)
T 4glp_A          222 AGVQP-HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPE  295 (310)
T ss_dssp             HTCCC-SSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCC
T ss_pred             cCCCC-CEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCC
Confidence            66777 999999999998767666666   69999999999999 6676664  7999999999999954 33 678899


Q ss_pred             CCEEeCCCCcccc
Q 040833          410 IENLDLSRNNLSG  422 (503)
Q Consensus       410 L~~L~L~~n~l~~  422 (503)
                      |+.|++++|++++
T Consensus       296 L~~L~L~~N~l~~  308 (310)
T 4glp_A          296 VDNLTLDGNPFLV  308 (310)
T ss_dssp             CSCEECSSTTTSC
T ss_pred             ccEEECcCCCCCC
Confidence            9999999999974

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=2.9e-21  Score=175.56  Aligned_cols=180  Identities=23%  Similarity=0.324  Sum_probs=160.7

Q ss_pred             CCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEe
Q 040833          287 TLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAID  366 (503)
Q Consensus       287 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~  366 (503)
                      ...++++++++.+. ..|..+.  +++++|++++|.+.+..+..+..++.+ ++|++++|.+++..+..|..+++|++|+
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKL-TWLNLDYNQLQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccC-CEEECCCCcCCccCHhHhccCCcCCEEE
Confidence            45678999998888 4444443  689999999999998777788899999 9999999999988888899999999999


Q ss_pred             CCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcc
Q 040833          367 ISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEG  446 (503)
Q Consensus       367 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  446 (503)
                      +++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            99999998778889999999999999999998777788999999999999999998887789999999999999999997


Q ss_pred             cCC-CCCccCCCCceeccCCCCCcc
Q 040833          447 EVP-IKGVFSNSSAISIDGNDNLCG  470 (503)
Q Consensus       447 ~~~-~~~~~~~l~~l~~~~n~~~c~  470 (503)
                      ..+ ....+++|+.+++++|++.|.
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCHHHHhCCCCCCEEEeeCCceeCC
Confidence            766 456678999999999999996

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=1.7e-21  Score=182.49  Aligned_cols=189  Identities=24%  Similarity=0.338  Sum_probs=91.8

Q ss_pred             cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833          216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE  295 (503)
Q Consensus       216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  295 (503)
                      ++++|++++|.+... + .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+.  ..+..+++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           42 GITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLT  115 (308)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECT
T ss_pred             CcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECC
Confidence            566666666655532 2 35556666666666666553322  55566666666666665532  235555566666666


Q ss_pred             CCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCccccc
Q 040833          296 ENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQ  375 (503)
Q Consensus       296 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  375 (503)
                      +|.+.+..  .+..+++|++|++++|.+.+. +. +..++.+ +.|++++|.+++..+  +..+++|++|++++|.+++.
T Consensus       116 ~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          116 STQITDVT--PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNL-QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             TSCCCCCG--GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTC-CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCCCch--hhcCCCCCCEEECCCCccCcC-cc-ccCCCCc-cEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence            66555321  255555555555555555422 11 3334444 444444444443211  44444444444444444422


Q ss_pred             CCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccc
Q 040833          376 IPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS  421 (503)
Q Consensus       376 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  421 (503)
                      .+  +..+++|+.|++++|.+++..  .+..+++|++|++++|+++
T Consensus       189 ~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          189 SP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             GG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             hh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            21  344444444444444444222  1344444444444444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=1.1e-22  Score=193.85  Aligned_cols=245  Identities=17%  Similarity=0.204  Sum_probs=191.5

Q ss_pred             cccCcEEEeeccccccccchhccCC--CCCcEEEccCCcccccCCccccCCCCCCEEEccCCccccc-CCccccCCCCCC
Q 040833          214 STRLRILIVGNNQLFGNIPSGLRNL--VNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGE-IPSSIGNLTLLI  290 (503)
Q Consensus       214 ~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~  290 (503)
                      +..++.++++++.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|+
T Consensus        46 ~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           46 ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            446899999998776   3445555  7899999999999876554 55789999999999998755 666788899999


Q ss_pred             EEEccCCcCcccCCccccCCCCCCEEECcCC-cCccc-CCcchhccccccceeEccCC-CCccC-CCcchhcCC-CCCeE
Q 040833          291 TLNFEENMLEGSIPSSLGKCQNLISLNLSNN-NLSGT-IPTEVIGLSSLSIYLDLSQN-QLNGP-LPSNFGILK-NLGAI  365 (503)
Q Consensus       291 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~~l~~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L  365 (503)
                      +|++++|.+.+..+..+..+++|++|++++| .+++. .+..+..++.+ ++|++++| .+++. .+..+..++ +|++|
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L-~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L  200 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL-DELNLSWCFDFTEKHVQVAVAHVSETITQL  200 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC-CEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC-CEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence            9999999988777778888999999999999 67643 56667778888 99999999 88754 456678899 99999


Q ss_pred             eCCCC--ccc-ccCCccccCCCCCCEEECCCCc-CcccCchhccCCCCCCEEeCCCCc-cccccCccCcCCCCCCeeecC
Q 040833          366 DISEN--KLS-GQIPSSIGSCTRLEQLVMNGNF-FQGNIPSSLSSLRGIENLDLSRNN-LSGRIPKYLENFPFLQNLNLS  440 (503)
Q Consensus       366 ~l~~n--~l~-~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~  440 (503)
                      ++++|  .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|+++
T Consensus       201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  280 (336)
T 2ast_B          201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF  280 (336)
T ss_dssp             ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence            99999  455 3456677789999999999998 776777888999999999999995 443333467889999999999


Q ss_pred             CCcCcccCCCCCcc-CCCCceeccCCC
Q 040833          441 FNHFEGEVPIKGVF-SNSSAISIDGND  466 (503)
Q Consensus       441 ~n~l~~~~~~~~~~-~~l~~l~~~~n~  466 (503)
                      +| +....  ...+ ..+..|++++|.
T Consensus       281 ~~-i~~~~--~~~l~~~l~~L~l~~n~  304 (336)
T 2ast_B          281 GI-VPDGT--LQLLKEALPHLQINCSH  304 (336)
T ss_dssp             TS-SCTTC--HHHHHHHSTTSEESCCC
T ss_pred             Cc-cCHHH--HHHHHhhCcceEEeccc
Confidence            99 33211  1112 345666665553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=2.3e-23  Score=202.31  Aligned_cols=239  Identities=20%  Similarity=0.223  Sum_probs=187.9

Q ss_pred             ccchhccCCCCCcEEEccCCcccccCC----ccccCCCCCCEEEccCCccc---ccCCcc-------ccCCCCCCEEEcc
Q 040833          230 NIPSGLRNLVNLEFLHLGGNQFTGRIP----GSIVDLYKLQRLALEGNKFW---GEIPSS-------IGNLTLLITLNFE  295 (503)
Q Consensus       230 ~~~~~~~~~~~L~~L~ls~n~~~~~~~----~~~~~~~~L~~L~l~~n~~~---~~~~~~-------~~~~~~L~~L~l~  295 (503)
                      .++..+..+++|++|++++|.+....+    ..+..+++|++|++++|.+.   +..|..       +..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            344567788999999999999886533    44778999999999997543   333433       3688999999999


Q ss_pred             CCcCcc----cCCccccCCCCCCEEECcCCcCcccCCcchhc----c---------ccccceeEccCCCCccC-CC---c
Q 040833          296 ENMLEG----SIPSSLGKCQNLISLNLSNNNLSGTIPTEVIG----L---------SSLSIYLDLSQNQLNGP-LP---S  354 (503)
Q Consensus       296 ~n~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~----~---------~~l~~~L~l~~n~l~~~-~~---~  354 (503)
                      +|.+..    ..+..+..+++|++|++++|.+....+..+..    +         +.+ ++|++++|.+++. .+   .
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L-~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL-RSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC-CEEECCSSCCTGGGHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCC-cEEECCCCCCCcHHHHHHHH
Confidence            999986    35567788999999999999997444433333    3         677 9999999999732 33   3


Q ss_pred             chhcCCCCCeEeCCCCcccc-----cCCccccCCCCCCEEECCCCcCc----ccCchhccCCCCCCEEeCCCCccccc--
Q 040833          355 NFGILKNLGAIDISENKLSG-----QIPSSIGSCTRLEQLVMNGNFFQ----GNIPSSLSSLRGIENLDLSRNNLSGR--  423 (503)
Q Consensus       355 ~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~--  423 (503)
                      .+..+++|++|++++|.++.     ..+..+..+++|+.|+|++|.++    ..++..+..+++|++|+|++|.+++.  
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  261 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  261 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence            56788999999999999973     23447888999999999999996    46778889999999999999999865  


Q ss_pred             --cCccCc--CCCCCCeeecCCCcCcc----cCCC-C-CccCCCCceeccCCCCCc
Q 040833          424 --IPKYLE--NFPFLQNLNLSFNHFEG----EVPI-K-GVFSNSSAISIDGNDNLC  469 (503)
Q Consensus       424 --~~~~~~--~~~~L~~L~l~~n~l~~----~~~~-~-~~~~~l~~l~~~~n~~~c  469 (503)
                        ++..+.  .+++|++|++++|.+++    ..|. . ..+++|+.|++++|+...
T Consensus       262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence              455553  38999999999999997    2332 2 336889999999887654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.7e-20  Score=175.76  Aligned_cols=196  Identities=26%  Similarity=0.332  Sum_probs=162.2

Q ss_pred             ccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 040833          235 LRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLI  314 (503)
Q Consensus       235 ~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  314 (503)
                      ...+++|++|+++++.+.. .+ .+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+.  ..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence            3456789999999998884 33 67889999999999999886544  88899999999999998854  3688899999


Q ss_pred             EEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCC
Q 040833          315 SLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGN  394 (503)
Q Consensus       315 ~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  394 (503)
                      +|++++|.+.+ .+ .+..++.+ ++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|
T Consensus       111 ~L~l~~n~l~~-~~-~l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          111 TLDLTSTQITD-VT-PLAGLSNL-QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN  183 (308)
T ss_dssp             EEECTTSCCCC-CG-GGTTCTTC-CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             EEECCCCCCCC-ch-hhcCCCCC-CEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence            99999999884 33 37778888 899999999985533  7889999999999999985433  888999999999999


Q ss_pred             cCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCccc
Q 040833          395 FFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGE  447 (503)
Q Consensus       395 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  447 (503)
                      .+++..+  +..+++|++|++++|++++..  .+..+++|+.|++++|++++.
T Consensus       184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          184 KISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             CCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred             ccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence            9985433  788999999999999998655  378899999999999998763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=2.3e-20  Score=178.38  Aligned_cols=241  Identities=16%  Similarity=0.139  Sum_probs=160.2

Q ss_pred             CEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCccccc-CCccccCCCCCCE-EEc
Q 040833          193 ELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGR-IPGSIVDLYKLQR-LAL  270 (503)
Q Consensus       193 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~~~~L~~-L~l  270 (503)
                      ++++.++++++ .+|..+   |+++++|++++|.+....+..|.++++|++|++++|.+.+. .+.+|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            46677777776 445433   45788888888888766666788888888888888887543 3456777777665 555


Q ss_pred             cCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcC-CcCcccCCcchhccccccceeEccCCCCc
Q 040833          271 EGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSN-NNLSGTIPTEVIGLSSLSIYLDLSQNQLN  349 (503)
Q Consensus       271 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~l~~~L~l~~n~l~  349 (503)
                      .+|.+..+.+..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+...++.|++++|.|+
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            66777777777788888888888888888766666666667777787765 45554444455555544477788888777


Q ss_pred             cCCCcchhcCCCCCeEeCCC-CcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccC
Q 040833          350 GPLPSNFGILKNLGAIDISE-NKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYL  428 (503)
Q Consensus       350 ~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  428 (503)
                      ...+..|. ..+|+++++++ |.++...+..|..+++|++|++++|+++...+..   +.+|+.|.+.++.--+..| .+
T Consensus       168 ~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l  242 (350)
T 4ay9_X          168 EIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TL  242 (350)
T ss_dssp             EECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CT
T ss_pred             CCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cc
Confidence            54444443 45677777764 5565444456777777888888888777443333   3455666655543333444 36


Q ss_pred             cCCCCCCeeecCCC
Q 040833          429 ENFPFLQNLNLSFN  442 (503)
Q Consensus       429 ~~~~~L~~L~l~~n  442 (503)
                      ..+++|+.+++.++
T Consensus       243 ~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          243 EKLVALMEASLTYP  256 (350)
T ss_dssp             TTCCSCCEEECSCH
T ss_pred             hhCcChhhCcCCCC
Confidence            67777777777643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=1.5e-20  Score=166.79  Aligned_cols=195  Identities=20%  Similarity=0.242  Sum_probs=130.6

Q ss_pred             CEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCC
Q 040833          290 ITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISE  369 (503)
Q Consensus       290 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  369 (503)
                      +.++++++.++. .|..+  .+++++|++++|.+.+..+..+..++.+ +.|++++|.+++..+..|..+++|++|++++
T Consensus        14 ~~v~c~~~~l~~-iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L-~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKL-RRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCSS-CCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTC-CEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcCc-CCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCC-CEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            345555555542 22222  1456666666666654444455555555 6666666666656666777888888888888


Q ss_pred             CcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833          370 NKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       370 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  449 (503)
                      |.++...+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++.+.+.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            88886666677888889999999999888878888889999999999999987777788889999999999999988776


Q ss_pred             CCCccCCCCceeccCCCCCcccCCCCCCCCCCCCCcccccc
Q 040833          450 IKGVFSNSSAISIDGNDNLCGGISELHLSTCSIKESKQSRS  490 (503)
Q Consensus       450 ~~~~~~~l~~l~~~~n~~~c~~~~~~~ls~~~~~~~~~~~~  490 (503)
                      ..+....+....+......|..+..  +.+-.+..+++..+
T Consensus       170 l~~l~~~l~~~~~~~~~~~C~~P~~--l~g~~l~~l~~~~~  208 (220)
T 2v9t_B          170 LKWLADYLHTNPIETSGARCTSPRR--LANKRIGQIKSKKF  208 (220)
T ss_dssp             GHHHHHHHHHCCCBCSCCBEEESGG--GTTCBGGGSCGGGC
T ss_pred             cHHHHHHHHhCCCCccCCCcCCchH--HcCCchhhCCHHHC
Confidence            4433333332223333345654433  34555555555444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=6e-20  Score=175.44  Aligned_cols=241  Identities=15%  Similarity=0.106  Sum_probs=177.0

Q ss_pred             cEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccc-hhccCCCCC
Q 040833          163 EWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIP-SGLRNLVNL  241 (503)
Q Consensus       163 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L  241 (503)
                      +.++.+++.++..       +..+  .+++++|++++|.++...+..|..++ +|++|++++|.+.+.++ ..|.+++++
T Consensus        12 ~~v~C~~~~Lt~i-------P~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l   81 (350)
T 4ay9_X           12 RVFLCQESKVTEI-------PSDL--PRNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKL   81 (350)
T ss_dssp             TEEEEESTTCCSC-------CTTC--CTTCSEEEEESCCCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred             CEEEecCCCCCcc-------CcCc--CCCCCEEEccCCcCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhh
Confidence            5677777777643       2222  25789999999999866556677776 89999999998765443 467888887


Q ss_pred             cE-EEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccC-CcCcccCCccccCCC-CCCEEEC
Q 040833          242 EF-LHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEE-NMLEGSIPSSLGKCQ-NLISLNL  318 (503)
Q Consensus       242 ~~-L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~-~L~~L~l  318 (503)
                      ++ +.+.+|.+....+..|..+++|++|++++|.+....+..+.....+..+++.+ +.+....+..|..+. .++.|++
T Consensus        82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L  161 (350)
T 4ay9_X           82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL  161 (350)
T ss_dssp             CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred             hhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence            65 55666888877788889999999999999998876666677777888888865 456656666666664 6888999


Q ss_pred             cCCcCcccCCcchhccccccceeEccC-CCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCc
Q 040833          319 SNNNLSGTIPTEVIGLSSLSIYLDLSQ-NQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ  397 (503)
Q Consensus       319 ~~n~~~~~~~~~~~~~~~l~~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  397 (503)
                      ++|.++ .++.......++ +.+++++ |.++...+..|..+++|++|++++|+++...+..   +.+|+.|.+.++.-.
T Consensus       162 ~~N~i~-~i~~~~f~~~~L-~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l  236 (350)
T 4ay9_X          162 NKNGIQ-EIHNSAFNGTQL-DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNL  236 (350)
T ss_dssp             CSSCCC-EECTTSSTTEEE-EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTC
T ss_pred             cccccc-CCChhhccccch-hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCc
Confidence            999988 455555555666 7888864 6677555567888999999999999998544444   445666666665444


Q ss_pred             ccCchhccCCCCCCEEeCCCCc
Q 040833          398 GNIPSSLSSLRGIENLDLSRNN  419 (503)
Q Consensus       398 ~~~~~~~~~l~~L~~L~L~~n~  419 (503)
                      ..+| .+..+++|+.+++.++.
T Consensus       237 ~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          237 KKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             CCCC-CTTTCCSCCEEECSCHH
T ss_pred             CcCC-CchhCcChhhCcCCCCc
Confidence            4566 47788999999998654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=2.2e-20  Score=165.75  Aligned_cols=195  Identities=18%  Similarity=0.179  Sum_probs=138.0

Q ss_pred             CEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCC-cchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCC
Q 040833          290 ITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIP-TEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDIS  368 (503)
Q Consensus       290 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  368 (503)
                      ++++++++.++. .|..+  .+.+++|++++|.+.+..+ ..+..++.+ +.|++++|.+++..+..|..+++|++|+++
T Consensus        14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L-~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQL-RKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCC-CEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            356666666653 33322  2345667777776664433 335566666 677777777776666678888899999999


Q ss_pred             CCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccC
Q 040833          369 ENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEV  448 (503)
Q Consensus       369 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  448 (503)
                      +|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|++.+.+
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            99998777778889999999999999999888888999999999999999999888889999999999999999999887


Q ss_pred             CCCCccCCCCceeccCCCCCcccCCCCCCCCCCCCCcccccc
Q 040833          449 PIKGVFSNSSAISIDGNDNLCGGISELHLSTCSIKESKQSRS  490 (503)
Q Consensus       449 ~~~~~~~~l~~l~~~~n~~~c~~~~~~~ls~~~~~~~~~~~~  490 (503)
                      +..+....++...+......|..+.  .+.+-.+..++...+
T Consensus       170 ~l~~l~~~~~~~~~~~~~~~C~~P~--~l~g~~l~~l~~~~~  209 (220)
T 2v70_A          170 YLAWLGEWLRKKRIVTGNPRCQKPY--FLKEIPIQDVAIQDF  209 (220)
T ss_dssp             GGHHHHHHHHHSCCBCCCCEEEESG--GGTTEEGGGSCGGGC
T ss_pred             chHHHHHHHHhcCccccCCccCCCh--HHCCCChhhCCHHHc
Confidence            7544433333333322223565543  334444444444333

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=1.5e-19  Score=160.37  Aligned_cols=155  Identities=21%  Similarity=0.253  Sum_probs=138.6

Q ss_pred             CEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCC
Q 040833          314 ISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNG  393 (503)
Q Consensus       314 ~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  393 (503)
                      +.++++++.++ .+|..+.  +.+ +.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|+|++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l-~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETI-TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTC-CEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCC-CEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            68899999988 6666543  344 9999999999988777899999999999999999988899999999999999999


Q ss_pred             CcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC-CCccCCCCceeccCCCCCcccC
Q 040833          394 NFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KGVFSNSSAISIDGNDNLCGGI  472 (503)
Q Consensus       394 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~l~~~~n~~~c~~~  472 (503)
                      |.+++..+..|.++++|++|+|++|++++..+..|..+++|++|++++|.+++..+. ...+++|+.+++++||+.|+|-
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            999977777789999999999999999988899999999999999999999987663 5567899999999999999753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=3.2e-19  Score=157.16  Aligned_cols=153  Identities=24%  Similarity=0.259  Sum_probs=80.5

Q ss_pred             CCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCC
Q 040833          289 LITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDIS  368 (503)
Q Consensus       289 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  368 (503)
                      +++|++++|.+....+..+..+++|++|++++|.+.+..+..+..++.+ ++|++++|.+++..+..|..+++|++|+++
T Consensus        30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL-TYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCc-CEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            3333333333333333333333344444444443332222223333333 444444444443333345556666666666


Q ss_pred             CCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccC
Q 040833          369 ENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEV  448 (503)
Q Consensus       369 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  448 (503)
                      +|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++.       ..+++|+.|++..|.+++..
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~i  181 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVV  181 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTB
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCcee
Confidence            66666555555666667777777777666555555666677777777777554       23456777777777777665


Q ss_pred             C
Q 040833          449 P  449 (503)
Q Consensus       449 ~  449 (503)
                      |
T Consensus       182 p  182 (208)
T 2o6s_A          182 R  182 (208)
T ss_dssp             B
T ss_pred             e
Confidence            5

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=6.3e-19  Score=156.33  Aligned_cols=156  Identities=17%  Similarity=0.227  Sum_probs=138.0

Q ss_pred             CCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCC-cchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEEC
Q 040833          313 LISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLP-SNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVM  391 (503)
Q Consensus       313 L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  391 (503)
                      -+.+++++|.++ .+|..+.   ..++.|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        13 ~~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           13 GTTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             TTEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            358999999998 5676543   334899999999997644 55889999999999999999888889999999999999


Q ss_pred             CCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC-CCCccCCCCceeccCCCCCcc
Q 040833          392 NGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP-IKGVFSNSSAISIDGNDNLCG  470 (503)
Q Consensus       392 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~~~~n~~~c~  470 (503)
                      ++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|.+++..| ....+++|+.+++++||+.|+
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            9999998888889999999999999999998889999999999999999999998755 456688999999999999997


Q ss_pred             cC
Q 040833          471 GI  472 (503)
Q Consensus       471 ~~  472 (503)
                      |-
T Consensus       169 c~  170 (220)
T 2v70_A          169 CY  170 (220)
T ss_dssp             GG
T ss_pred             Cc
Confidence            54

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=2.4e-19  Score=171.89  Aligned_cols=181  Identities=23%  Similarity=0.228  Sum_probs=150.2

Q ss_pred             CEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCcccc-CCCCCCEEECcCCcCcccCCcchhccccccceeEcc
Q 040833          266 QRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLG-KCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLS  344 (503)
Q Consensus       266 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~  344 (503)
                      +.++++++.+.. .|..+  .+.++.|++++|.+....+..+. .+++|++|++++|.+.+..+..+..++.+ ++|+++
T Consensus        21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL-RYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECC
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCC-CEEECC
Confidence            578999998874 45443  35689999999999987777777 89999999999999987777778888888 899999


Q ss_pred             CCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhc---cCCCCCCEEeCCCCccc
Q 040833          345 QNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSL---SSLRGIENLDLSRNNLS  421 (503)
Q Consensus       345 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~  421 (503)
                      +|.++...+..|..+++|++|++++|.+++..+..|..+++|+.|+|++|.+++..+..|   ..+++|+.|+|++|+++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            999987777788889999999999999988888889999999999999999986655555   56899999999999998


Q ss_pred             cccCccCcCCCC--CCeeecCCCcCcccCCC
Q 040833          422 GRIPKYLENFPF--LQNLNLSFNHFEGEVPI  450 (503)
Q Consensus       422 ~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~  450 (503)
                      ...+..+..++.  ++.|++++|++.+.+..
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l  207 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLECDCKL  207 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred             ccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence            666667777776  48899999999987653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=5.8e-19  Score=155.49  Aligned_cols=162  Identities=24%  Similarity=0.213  Sum_probs=82.3

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEc
Q 040833          264 KLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDL  343 (503)
Q Consensus       264 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l  343 (503)
                      ++++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..++.+ ++|++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL-KELAL  107 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEEC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC-CEEEc
Confidence            34444444444443333333444444444444444443333334444444444444444443222333344444 44444


Q ss_pred             cCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccc
Q 040833          344 SQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGR  423 (503)
Q Consensus       344 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  423 (503)
                      ++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.       ..+++|++|+++.|++++.
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~  180 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGV  180 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTT
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCce
Confidence            445444444444555666666666666666555555666666666666666554       2345666666776766666


Q ss_pred             cCccCcCCCC
Q 040833          424 IPKYLENFPF  433 (503)
Q Consensus       424 ~~~~~~~~~~  433 (503)
                      +|..++.++.
T Consensus       181 ip~~~~~l~~  190 (208)
T 2o6s_A          181 VRNSAGSVAP  190 (208)
T ss_dssp             BBCTTSSBCT
T ss_pred             eeccCccccC
Confidence            6666555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=4.5e-19  Score=170.03  Aligned_cols=176  Identities=23%  Similarity=0.157  Sum_probs=151.3

Q ss_pred             cEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCcccc-CCCCCCEEEccCCcCcccCCccccCCCCCCEEECcC
Q 040833          242 EFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIG-NLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSN  320 (503)
Q Consensus       242 ~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  320 (503)
                      +.++++++.++. +|..+.  +.++.|++++|.+++..+..+. .+++|++|++++|.+....+..|..+++|++|++++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            689999998884 555443  4689999999999988888887 899999999999999988888899999999999999


Q ss_pred             CcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccc---cCCCCCCEEECCCCcCc
Q 040833          321 NNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSI---GSCTRLEQLVMNGNFFQ  397 (503)
Q Consensus       321 n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~  397 (503)
                      |.+....+..+..++.+ +.|++++|.+....+..|..+++|++|++++|.+++..+..|   ..+++|+.|+|++|.++
T Consensus        98 N~l~~~~~~~~~~l~~L-~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQAL-EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SCCCEECTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCC-CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            99987767778888888 999999999998888889999999999999999986555555   56899999999999999


Q ss_pred             ccCchhccCCCC--CCEEeCCCCccc
Q 040833          398 GNIPSSLSSLRG--IENLDLSRNNLS  421 (503)
Q Consensus       398 ~~~~~~~~~l~~--L~~L~L~~n~l~  421 (503)
                      +..+..+..++.  ++.|+|++|++.
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ccCHHHhhhccHhhcceEEecCCCcc
Confidence            777778888877  489999999986

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=2.5e-18  Score=153.52  Aligned_cols=155  Identities=22%  Similarity=0.267  Sum_probs=113.8

Q ss_pred             CEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCC
Q 040833          290 ITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISE  369 (503)
Q Consensus       290 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  369 (503)
                      +.++++++.+.. .|..+  .++|++|++++|.+.+..+..+..++.+ +.|++++|.++...+..|..+++|++|++++
T Consensus        22 ~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L-~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           22 TTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINL-KELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCC-cEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            445555555552 22222  2566666666666665555555566665 6666666666655555677788888888888


Q ss_pred             CcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833          370 NKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       370 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  449 (503)
                      |.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|+++...+..|..+++|+.|++++|++.+.++
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            8888666677788888999999999888 667778888999999999999887777778888999999999999888765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=1e-18  Score=162.12  Aligned_cols=171  Identities=25%  Similarity=0.361  Sum_probs=108.1

Q ss_pred             cCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 040833          236 RNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLIS  315 (503)
Q Consensus       236 ~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  315 (503)
                      ..+++|+.|++++|.+... + .+..+++|+.|++++|.+++..+  +..+++|++|++++|.+.+.  ..+..+++|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred             hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence            4567788888888877743 2 46777788888888887775443  77778888888888877642  23677777777


Q ss_pred             EECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCc
Q 040833          316 LNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF  395 (503)
Q Consensus       316 L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~  395 (503)
                      |++++|.+.+.  ..+..++.+ +.|++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|+.|++++|.
T Consensus       117 L~L~~n~i~~~--~~l~~l~~L-~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             EECTTSCCCCC--GGGGGCTTC-CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCCC--hhhcCCCCC-CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence            77777777632  344555555 5666666666543  345556666666666666654332  5555666666666666


Q ss_pred             CcccCchhccCCCCCCEEeCCCCccc
Q 040833          396 FQGNIPSSLSSLRGIENLDLSRNNLS  421 (503)
Q Consensus       396 l~~~~~~~~~~l~~L~~L~L~~n~l~  421 (503)
                      +++. + .+..+++|+.|++++|+++
T Consensus       190 i~~l-~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          190 ISDL-R-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred             CCCC-h-hhccCCCCCEEECcCCccc
Confidence            5532 2 2555566666666666555

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=2.3e-18  Score=153.78  Aligned_cols=155  Identities=20%  Similarity=0.235  Sum_probs=136.9

Q ss_pred             CCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEEC
Q 040833          312 NLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVM  391 (503)
Q Consensus       312 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  391 (503)
                      +-+.++++++.+. .+|..+.  +.+ +.|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|+.|+|
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L-~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNA-QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTC-SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCC-CEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            4678999999887 6666443  455 99999999999888888999999999999999998776778899999999999


Q ss_pred             CCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC-CCCccCCCCceeccCCCCCcc
Q 040833          392 NGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP-IKGVFSNSSAISIDGNDNLCG  470 (503)
Q Consensus       392 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~~~~n~~~c~  470 (503)
                      ++|.+++..+..|..+++|++|+|++|+++ .+|..+..+++|++|++++|.+++..+ ....+++|+.+++++||+.|+
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            999999887788999999999999999999 667888999999999999999997665 355678999999999999997


Q ss_pred             c
Q 040833          471 G  471 (503)
Q Consensus       471 ~  471 (503)
                      |
T Consensus       175 c  175 (229)
T 3e6j_A          175 C  175 (229)
T ss_dssp             B
T ss_pred             c
Confidence            6

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=1.7e-18  Score=160.67  Aligned_cols=172  Identities=23%  Similarity=0.300  Sum_probs=116.0

Q ss_pred             cCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccc
Q 040833          260 VDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSI  339 (503)
Q Consensus       260 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~  339 (503)
                      ..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+ .+ .+..++.+ +
T Consensus        43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L-~  115 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKL-K  115 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTC-C
T ss_pred             hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCC-C
Confidence            4556777777777776643  236667777777777777765433  6677777777777777763 22 36666666 7


Q ss_pred             eeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCc
Q 040833          340 YLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNN  419 (503)
Q Consensus       340 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  419 (503)
                      +|++++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|++|++++|.
T Consensus       116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence            777777777643  3466677777777777777643  456677777777777777775433  6677777777777777


Q ss_pred             cccccCccCcCCCCCCeeecCCCcCcc
Q 040833          420 LSGRIPKYLENFPFLQNLNLSFNHFEG  446 (503)
Q Consensus       420 l~~~~~~~~~~~~~L~~L~l~~n~l~~  446 (503)
                      +++. + .+..+++|+.|++++|++..
T Consensus       190 i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          190 ISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCC-h-hhccCCCCCEEECcCCcccC
Confidence            7643 2 36677777777777777664

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=5.9e-18  Score=169.95  Aligned_cols=183  Identities=27%  Similarity=0.332  Sum_probs=81.4

Q ss_pred             cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833          216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE  295 (503)
Q Consensus       216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  295 (503)
                      +++.|++++|.+.+ +|..+  .++|++|++++|.++ .+|   ..+++|+.|++++|.+++ .|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            45555555555543 33222  245555555555555 223   234455555555555553 232 322  55555555


Q ss_pred             CCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCccccc
Q 040833          296 ENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQ  375 (503)
Q Consensus       296 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  375 (503)
                      +|.+++ .|.   .+++|+.|++++|.+++ +|.   .++++ +.|++++|.+++ +|. |.  ++|++|++++|.++ .
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L-~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~  194 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSL-EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S  194 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTC-CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCc-CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence            555543 222   34555555555555542 332   22333 445555555443 222 32  44555555555444 3


Q ss_pred             CCccccCCCCC-------CEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCcc
Q 040833          376 IPSSIGSCTRL-------EQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKY  427 (503)
Q Consensus       376 ~~~~~~~~~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  427 (503)
                      +|. +..  +|       +.|+|++|.++ .+|..+..+++|+.|+|++|++++..|..
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred             hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence            333 222  33       44445444444 23333333444444444444444443333

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.77  E-value=1.1e-18  Score=151.38  Aligned_cols=168  Identities=22%  Similarity=0.332  Sum_probs=128.7

Q ss_pred             CEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCc-chhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECC
Q 040833          314 ISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPS-NFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMN  392 (503)
Q Consensus       314 ~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  392 (503)
                      +.++++++.+. .+|..+..  .+ ++|++++|.+++..+. .|..+++|++|++++|.+++..|..|..+++|++|+|+
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l-~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HT-TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TC-SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCCC--CC-CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            56777777775 55554332  34 7788888887755543 47888999999999999998888899999999999999


Q ss_pred             CCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCcccC
Q 040833          393 GNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGI  472 (503)
Q Consensus       393 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~~  472 (503)
                      +|.+++..+..|.++++|++|+|++|++++..|..|..+++|++|++++|++.+.++..+....++...+.++...|+.+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            99999888888999999999999999999888889999999999999999999888755554555555566666677655


Q ss_pred             CCCCCCCCCCCCccc
Q 040833          473 SELHLSTCSIKESKQ  487 (503)
Q Consensus       473 ~~~~ls~~~~~~~~~  487 (503)
                      ..+  .+-.+..+..
T Consensus       167 ~~l--~~~~l~~l~~  179 (192)
T 1w8a_A          167 SKV--RDVQIKDLPH  179 (192)
T ss_dssp             TTT--TTSBGGGSCT
T ss_pred             hHH--cCCChhhCcH
Confidence            433  3334444433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=1.4e-17  Score=167.12  Aligned_cols=181  Identities=22%  Similarity=0.345  Sum_probs=118.4

Q ss_pred             CCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECc
Q 040833          240 NLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLS  319 (503)
Q Consensus       240 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  319 (503)
                      +++.|++++|.+++ +|..+  .++|+.|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            67777777777775 44433  256777777777776 334   346777777777777775 343 433  77777777


Q ss_pred             CCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCccc
Q 040833          320 NNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGN  399 (503)
Q Consensus       320 ~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~  399 (503)
                      +|.+++ +|.   .++++ +.|++++|.+++ +|.   .+++|++|++++|.+++ +|. +.  ++|+.|+|++|.++ .
T Consensus       129 ~N~l~~-lp~---~l~~L-~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~  194 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALL-EYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S  194 (571)
T ss_dssp             SSCCSC-CCC---CCTTC-CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred             CCcCCC-CCC---cCccc-cEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence            777764 454   34555 777777777774 333   45677777777777774 444 44  67777777777777 4


Q ss_pred             CchhccCCCCC-------CEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833          400 IPSSLSSLRGI-------ENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       400 ~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  449 (503)
                      +|. +..  +|       +.|+|++|+++ .+|..+..+++|+.|++++|++++..|
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            444 443  55       77777777777 355555557777777777777776544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=1.4e-17  Score=169.24  Aligned_cols=175  Identities=25%  Similarity=0.357  Sum_probs=108.8

Q ss_pred             cCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 040833          236 RNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLIS  315 (503)
Q Consensus       236 ~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  315 (503)
                      ..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+...  ..+..+++|++
T Consensus        40 ~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence            3455566666666665532 2 35566666666666666654433  55666666666666666532  24566666777


Q ss_pred             EECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCc
Q 040833          316 LNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF  395 (503)
Q Consensus       316 L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~  395 (503)
                      |++++|.+.+ + ..+..++.+ +.|++++|.+.+.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|.
T Consensus       114 L~Ls~N~l~~-l-~~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          114 LSLEHNGISD-I-NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             EECTTSCCCC-C-GGGGGCTTC-SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEecCCCCCC-C-ccccCCCcc-CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence            7777766653 2 335555555 6666666666643  456667777777777777765444  6677777777777777


Q ss_pred             CcccCchhccCCCCCCEEeCCCCccccccC
Q 040833          396 FQGNIPSSLSSLRGIENLDLSRNNLSGRIP  425 (503)
Q Consensus       396 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  425 (503)
                      +.+.  ..+..+++|+.|+|++|++.....
T Consensus       187 i~~l--~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          187 ISDL--RALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             CCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred             CCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence            7643  346677777777777777764433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=1.5e-18  Score=164.37  Aligned_cols=101  Identities=14%  Similarity=0.019  Sum_probs=59.0

Q ss_pred             CCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCC-EEEccCCcCcccCCccccCCCCCCEE
Q 040833          238 LVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLI-TLNFEENMLEGSIPSSLGKCQNLISL  316 (503)
Q Consensus       238 ~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L  316 (503)
                      +++|+++++++|.++...+.+|.++.+|+.+++.+| +..+...+|..+++|+ .+++.+ .+..+.+.+|.+|++|+++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            556666666666555555556666666666666665 4445555566666666 666655 4554555566666666666


Q ss_pred             ECcCCcCcccCCcchhcccccccee
Q 040833          317 NLSNNNLSGTIPTEVIGLSSLSIYL  341 (503)
Q Consensus       317 ~l~~n~~~~~~~~~~~~~~~l~~~L  341 (503)
                      ++++|.+....+..|.+++++ +.+
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L-~~l  326 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPS-KLI  326 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCC-CEE
T ss_pred             EeCCCccCccchhhhcCCcch-hhh
Confidence            666666654444555555555 444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=5.1e-18  Score=147.89  Aligned_cols=103  Identities=18%  Similarity=0.242  Sum_probs=57.5

Q ss_pred             ceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCc-CcccCchhccCCCCCCEEeCCC
Q 040833          339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF-FQGNIPSSLSSLRGIENLDLSR  417 (503)
Q Consensus       339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~  417 (503)
                      ++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++
T Consensus        91 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~  168 (197)
T 4ezg_A           91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQF  168 (197)
T ss_dssp             CEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTT
T ss_pred             CEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCC
Confidence            444444444443344445555666666666666665555556666666666666665 43 333 456666666666666


Q ss_pred             CccccccCccCcCCCCCCeeecCCCcCc
Q 040833          418 NNLSGRIPKYLENFPFLQNLNLSFNHFE  445 (503)
Q Consensus       418 n~l~~~~~~~~~~~~~L~~L~l~~n~l~  445 (503)
                      |++++..  .+..+++|++|++++|++.
T Consensus       169 n~i~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          169 DGVHDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             BCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred             CCCcChH--HhccCCCCCEEEeeCcccC
Confidence            6665422  4556666666666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.8e-17  Score=168.24  Aligned_cols=187  Identities=22%  Similarity=0.291  Sum_probs=157.9

Q ss_pred             EEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcC
Q 040833          244 LHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNL  323 (503)
Q Consensus       244 L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  323 (503)
                      +.+..+.+.+..  .+..++.|+.|++++|.+... + .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+
T Consensus        26 l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           26 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI   99 (605)
T ss_dssp             HHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred             HhccCCCccccc--chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence            344445444332  345778999999999998854 3 58889999999999999986554  88999999999999999


Q ss_pred             cccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchh
Q 040833          324 SGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSS  403 (503)
Q Consensus       324 ~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  403 (503)
                      .+ .+ .+..++.+ +.|++++|.+.+.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+..+  
T Consensus       100 ~~-l~-~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--  170 (605)
T 1m9s_A          100 KD-LS-SLKDLKKL-KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--  170 (605)
T ss_dssp             CC-CT-TSTTCTTC-CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--
T ss_pred             CC-Ch-hhccCCCC-CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--
Confidence            84 33 67888888 9999999999854  4588999999999999999864  678899999999999999997655  


Q ss_pred             ccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCccc
Q 040833          404 LSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGE  447 (503)
Q Consensus       404 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  447 (503)
                      +..+++|+.|+|++|++++.  ..+..+++|+.|++++|++...
T Consensus       171 l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          171 LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            89999999999999999864  4688999999999999999864

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.74  E-value=8.1e-18  Score=159.23  Aligned_cols=270  Identities=11%  Similarity=0.060  Sum_probs=147.0

Q ss_pred             CCCCcEEEcccccCCCCCCCCccccccccC-CCCCCEEECcCCccc--ccCchhHhhccccCcEEEeeccccccccchhc
Q 040833          159 LHKLEWVGISRNHLGNGKKDDLEFVNSLVN-ASRLELLQISDNNFG--GMLPEAVGNLSTRLRILIVGNNQLFGNIPSGL  235 (503)
Q Consensus       159 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  235 (503)
                      +.++++|.++++- ..      .....+.. +++|++|++++|.+.  .....   ..+ .++.+.+..+.   .....|
T Consensus        24 ~~~l~~L~l~g~i-~~------~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~-~~~~~~~~~~~---I~~~aF   89 (329)
T 3sb4_A           24 ANSITHLTLTGKL-NA------EDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYP-NGKFYIYMANF---VPAYAF   89 (329)
T ss_dssp             HHHCSEEEEEEEE-CH------HHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSG-GGCCEEECTTE---ECTTTT
T ss_pred             hCceeEEEEeccc-cH------HHHHHHHHhhccCeEEecCcceeEEecCccc---ccc-ccccccccccc---cCHHHh
Confidence            4457777776542 11      11122222 567777787777766  11111   111 23334444442   223345


Q ss_pred             cC--------CCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCc----CcccC
Q 040833          236 RN--------LVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENM----LEGSI  303 (503)
Q Consensus       236 ~~--------~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~----~~~~~  303 (503)
                      .+        +++|++|++.. .++.+.+.+|.++++|+.+++++|.+..+.+.+|..+.++..+......    ...+.
T Consensus        90 ~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~  168 (329)
T 3sb4_A           90 SNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE  168 (329)
T ss_dssp             EEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTT
T ss_pred             cccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccc
Confidence            55        77788888877 6666666777777888888888777766667777776666666555422    12233


Q ss_pred             CccccCCCCCC-EEECcCCcCcccCCcchh----ccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCc
Q 040833          304 PSSLGKCQNLI-SLNLSNNNLSGTIPTEVI----GLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPS  378 (503)
Q Consensus       304 ~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~----~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  378 (503)
                      ..+|..+..|+ .+.+.....   ++..+.    ....+ ..+.+.++-...........+++|+++++++|.++...+.
T Consensus       169 ~~~f~~~~~L~~~i~~~~~~~---l~~~~~~~~~~~~~~-~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~  244 (329)
T 3sb4_A          169 HFAFIEGEPLETTIQVGAMGK---LEDEIMKAGLQPRDI-NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDF  244 (329)
T ss_dssp             TSCEEESCCCEEEEEECTTCC---HHHHHHHTTCCGGGC-SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTT
T ss_pred             ccccccccccceeEEecCCCc---HHHHHhhcccCcccc-ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHh
Confidence            34455556665 333332211   111111    11111 3333333211101111111356677777777666656666


Q ss_pred             cccCCCCCCEEECCCCcCcccCchhccCCCCCC-EEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833          379 SIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIE-NLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       379 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  449 (503)
                      +|.+|++|+.|++.+| ++.+...+|.+|++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++...+
T Consensus       245 aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          245 TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD  314 (329)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred             hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence            6777777777777666 5555666677777777 777766 5655666667777777777776666664443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=1.4e-17  Score=145.20  Aligned_cols=153  Identities=15%  Similarity=0.225  Sum_probs=108.0

Q ss_pred             CCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcE
Q 040833           13 GSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNY   92 (503)
Q Consensus        13 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~   92 (503)
                      +.+++|++|++++|.++ ..| .+..+++|++|++++|.+..  +..+..+++|++|++++|.+....+..+.++++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            56777888888888887 445 57778888888888886552  346777888888888888887666777788888888


Q ss_pred             EEccCCCCcccCchhhhcCCCCCCEEEccCCc-ccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEccccc
Q 040833           93 ICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQ-FTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNH  171 (503)
Q Consensus        93 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~  171 (503)
                      |++++|.+.+..+..+.. +++|++|++++|. ++ .++ .+..+++|++|++++|.+.... .+..+++|++|++++|.
T Consensus       117 L~Ls~n~i~~~~~~~l~~-l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINT-LPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EECCSSBCBGGGHHHHTT-CSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred             EEecCCccCcHhHHHHhh-CCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence            888888877555655554 7888888888876 54 444 5677777777777777766432 56666666667666666


Q ss_pred             CC
Q 040833          172 LG  173 (503)
Q Consensus       172 l~  173 (503)
                      +.
T Consensus       193 i~  194 (197)
T 4ezg_A          193 IG  194 (197)
T ss_dssp             --
T ss_pred             cC
Confidence            54

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.74  E-value=1.3e-17  Score=144.37  Aligned_cols=172  Identities=19%  Similarity=0.243  Sum_probs=128.8

Q ss_pred             CEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCC
Q 040833          314 ISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNG  393 (503)
Q Consensus       314 ~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  393 (503)
                      +.++++++.+. .+|..+.  +.+ ++|++++|.++ .++..|..+++|++|++++|.+++..+..|.++++|++|+|++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l-~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDV-TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTC-CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCC-CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            46677777766 4554332  233 77888888887 5567788899999999999999987778899999999999999


Q ss_pred             CcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCcccCC
Q 040833          394 NFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGIS  473 (503)
Q Consensus       394 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~~~  473 (503)
                      |.+++..+..|.++++|++|+|++|+++...+..|..+++|+.|++++|++.+.+...+....++..........|..+.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~  167 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPG  167 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESG
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCch
Confidence            99998888889999999999999999997777789999999999999999998776544333333222223334565444


Q ss_pred             CCCCCCCCCCCcccccccc
Q 040833          474 ELHLSTCSIKESKQSRSRS  492 (503)
Q Consensus       474 ~~~ls~~~~~~~~~~~~~~  492 (503)
                        .+.+-.+..+++..++.
T Consensus       168 --~l~g~~l~~~~~~~~~~  184 (193)
T 2wfh_A          168 --EMADKLLLTTPSKKFTC  184 (193)
T ss_dssp             --GGTTCBTTTSCGGGCCC
T ss_pred             --HHCCCCcccCChHHeee
Confidence              34566666666665543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.73  E-value=5.6e-16  Score=150.38  Aligned_cols=82  Identities=13%  Similarity=0.115  Sum_probs=39.1

Q ss_pred             hhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCC
Q 040833          356 FGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQ  435 (503)
Q Consensus       356 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~  435 (503)
                      |..+.+|+.+.+.++ ++.+...+|.+|.+|+.+++.++ ++.+...+|.+|.+|+.+++..+ ++.+...+|.++++|+
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence            444445555555433 33333445555555555555432 33344445555555555555444 4434444555555555


Q ss_pred             eeecC
Q 040833          436 NLNLS  440 (503)
Q Consensus       436 ~L~l~  440 (503)
                      .+++.
T Consensus       370 ~i~lp  374 (394)
T 4fs7_A          370 KVELP  374 (394)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            55553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.72  E-value=7.2e-16  Score=149.62  Aligned_cols=330  Identities=13%  Similarity=0.067  Sum_probs=176.6

Q ss_pred             CcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCC
Q 040833            9 PGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLS   88 (503)
Q Consensus         9 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~   88 (503)
                      ..||.+|++|+.+.+..+ ++.+...+|.+|++|+.+++..+ +..+...+|..+..|+.+.+..+ +......+|.++.
T Consensus        64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~  140 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD  140 (394)
T ss_dssp             TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred             HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence            445555555555555432 44444455555555555555433 33344445555555555444433 2223334444443


Q ss_pred             CCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcc
Q 040833           89 SLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGIS  168 (503)
Q Consensus        89 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~  168 (503)
                      .++.......  . .+....+..+++|+.+.+..+. +......|..+.+|+.+.+..+ +....               
T Consensus       141 ~~~~~~~~~~--~-~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~---------------  200 (394)
T 4fs7_A          141 FKEITIPEGV--T-VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIR---------------  200 (394)
T ss_dssp             CSEEECCTTC--C-EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEEC---------------
T ss_pred             ccccccCccc--c-ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeC---------------
Confidence            3222221111  1 2233333344555555554332 2233344444555554444332 11111               


Q ss_pred             cccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccC
Q 040833          169 RNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGG  248 (503)
Q Consensus       169 ~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~  248 (503)
                                    ..++..+..|+.+.+..+... .....+ .. +.++.+.+.... .......+..+..++.+.+..
T Consensus       201 --------------~~~F~~~~~L~~i~~~~~~~~-i~~~~~-~~-~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~  262 (394)
T 4fs7_A          201 --------------DYCFAECILLENMEFPNSLYY-LGDFAL-SK-TGVKNIIIPDSF-TELGKSVFYGCTDLESISIQN  262 (394)
T ss_dssp             --------------TTTTTTCTTCCBCCCCTTCCE-ECTTTT-TT-CCCCEEEECTTC-CEECSSTTTTCSSCCEEEECC
T ss_pred             --------------chhhccccccceeecCCCceE-eehhhc-cc-CCCceEEECCCc-eecccccccccccceeEEcCC
Confidence                          123344455555554443221 111111 11 356666665432 223444566777777777766


Q ss_pred             CcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCC
Q 040833          249 NQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIP  328 (503)
Q Consensus       249 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  328 (503)
                      +... .....|..+..++.+......   .....|..+.+|+.+.+.++ +..+...+|..|.+|+++++..+ ++....
T Consensus       263 ~~~~-i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~  336 (394)
T 4fs7_A          263 NKLR-IGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK  336 (394)
T ss_dssp             TTCE-ECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred             Ccce-eeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhH
Confidence            6433 455667777777777766554   23345677777888777654 55466667777788888877544 544445


Q ss_pred             cchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEE
Q 040833          329 TEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQL  389 (503)
Q Consensus       329 ~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  389 (503)
                      ..|.++.+| +.+.+..+ ++......|.+|++|+.+++..+ +. ....+|.+|++|+.+
T Consensus       337 ~aF~~c~~L-~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          337 RSFRGCTSL-SNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTTTTCTTC-CEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             HhccCCCCC-CEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            667777777 77777665 55566678889999999998765 33 334678888888765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=1.9e-17  Score=151.02  Aligned_cols=169  Identities=24%  Similarity=0.299  Sum_probs=106.0

Q ss_pred             CCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEE
Q 040833          238 LVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLN  317 (503)
Q Consensus       238 ~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  317 (503)
                      +.+++.++++++.+++..  .+..+++|+.|++++|.+... + .+..+++|++|++++|.+.+..+  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            344566667777776432  466777888888888877643 3 56777888888888887775443  77777888888


Q ss_pred             CcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCc
Q 040833          318 LSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ  397 (503)
Q Consensus       318 l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  397 (503)
                      +++|++.+ ++... . +.+ +.|++++|.+++.  ..+..+++|++|++++|.+++. + .+..+++|++|++++|.++
T Consensus        92 L~~N~l~~-l~~~~-~-~~L-~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A           92 VNRNRLKN-LNGIP-S-ACL-SRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             CCSSCCSC-CTTCC-C-SSC-CEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred             CCCCccCC-cCccc-c-Ccc-cEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence            88887763 33221 1 444 6666666666543  2355566666666666666533 2 4555666666666666665


Q ss_pred             ccCchhccCCCCCCEEeCCCCcccc
Q 040833          398 GNIPSSLSSLRGIENLDLSRNNLSG  422 (503)
Q Consensus       398 ~~~~~~~~~l~~L~~L~L~~n~l~~  422 (503)
                      +.  ..+..+++|+.|++++|+++.
T Consensus       164 ~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          164 NT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             BC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             ch--HHhccCCCCCEEeCCCCcccC
Confidence            43  445566666666666666653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=3.5e-17  Score=149.28  Aligned_cols=166  Identities=19%  Similarity=0.266  Sum_probs=86.4

Q ss_pred             cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833          216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE  295 (503)
Q Consensus       216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  295 (503)
                      ++..+.++++.+.+..  .+..+++|++|++++|.++. .+ .+..+++|+.|++++|.+.+..+  +..+++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            3444455555544322  24445556666666655552 22 45555556666666665554332  5555566666666


Q ss_pred             CCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCccccc
Q 040833          296 ENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQ  375 (503)
Q Consensus       296 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  375 (503)
                      +|.+.+..+  +.. ++|++|++++|.+.+ . ..+..++.+ +.|++++|++++.  ..+..+++|++|++++|.+++.
T Consensus        94 ~N~l~~l~~--~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L-~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           94 RNRLKNLNG--IPS-ACLSRLFLDNNELRD-T-DSLIHLKNL-EILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             SSCCSCCTT--CCC-SSCCEEECCSSCCSB-S-GGGTTCTTC-CEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC
T ss_pred             CCccCCcCc--ccc-CcccEEEccCCccCC-C-hhhcCcccc-cEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch
Confidence            665553221  122 556666666665553 2 234455555 5566666655533  2355555666666666655533


Q ss_pred             CCccccCCCCCCEEECCCCcCc
Q 040833          376 IPSSIGSCTRLEQLVMNGNFFQ  397 (503)
Q Consensus       376 ~~~~~~~~~~L~~L~L~~n~l~  397 (503)
                        ..+..+++|+.|++++|.++
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEE
T ss_pred             --HHhccCCCCCEEeCCCCccc
Confidence              34555555666666665555

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.69  E-value=1.9e-16  Score=137.06  Aligned_cols=129  Identities=19%  Similarity=0.231  Sum_probs=115.6

Q ss_pred             ceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCC
Q 040833          339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRN  418 (503)
Q Consensus       339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  418 (503)
                      +.++++++.++ .+|..+  .+++++|++++|.++ .+|..|..+++|+.|++++|.+++..+..|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            68999999998 555544  368999999999998 67789999999999999999999888889999999999999999


Q ss_pred             ccccccCccCcCCCCCCeeecCCCcCcccCCC-CCccCCCCceeccCCCCCccc
Q 040833          419 NLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KGVFSNSSAISIDGNDNLCGG  471 (503)
Q Consensus       419 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~l~~~~n~~~c~~  471 (503)
                      +++...+..|..+++|+.|++++|.++...+. ...+++|+.+++++||+.|+|
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence            99988888999999999999999999976653 556789999999999999975

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.68  E-value=3.1e-15  Score=144.40  Aligned_cols=242  Identities=12%  Similarity=0.092  Sum_probs=152.7

Q ss_pred             CCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEE
Q 040833          190 SRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLA  269 (503)
Q Consensus       190 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~  269 (503)
                      ..++.+.+.+. ++......|.. . +|+.+.+..+ +..+...+|.++ +|+.+.+.. .++.....+|.++++|+.++
T Consensus       113 ~~l~~i~ip~~-i~~I~~~aF~~-~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          113 KGYNEIILPNS-VKSIPKDAFRN-S-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SSCSEEECCTT-CCEECTTTTTT-C-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             CCccEEEECCc-cCEehHhhccc-C-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            34455555432 22233334443 2 5666666544 444444555553 577777765 44445556677777777777


Q ss_pred             ccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCc
Q 040833          270 LEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLN  349 (503)
Q Consensus       270 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~  349 (503)
                      +.+|.++.+....|. +.+|+.+.+.++ +..+...+|..+++|+++++..+ +.......|.. ..+ +.+.+. +.++
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L-~~i~lp-~~i~  260 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI-TTVKLP-NGVT  260 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC-SEEEEE-TTCC
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc-cEEEeC-CCcc
Confidence            777766655555565 467777777643 55566667777777777777654 33233344444 444 667773 4455


Q ss_pred             cCCCcchhcCCCCCeEeCCCCccc-----ccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCcccccc
Q 040833          350 GPLPSNFGILKNLGAIDISENKLS-----GQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRI  424 (503)
Q Consensus       350 ~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  424 (503)
                      ......|.++++|+.+++.++.+.     ...+.+|.+|++|+.+++.+ .++.+...+|.+|.+|+.++|..+ ++.+.
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~  338 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN  338 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence            455667777888888887776553     35566788888888888874 466666777888888888888555 66566


Q ss_pred             CccCcCCCCCCeeecCCCcCcc
Q 040833          425 PKYLENFPFLQNLNLSFNHFEG  446 (503)
Q Consensus       425 ~~~~~~~~~L~~L~l~~n~l~~  446 (503)
                      ..+|.++ +|+.+++.+|....
T Consensus       339 ~~aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          339 FSAFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             TTSSSSS-CCCEEEECCSSCCB
T ss_pred             HHhCCCC-CCCEEEEcCCCCcc
Confidence            7778888 88888888886654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.68  E-value=1e-14  Score=140.86  Aligned_cols=265  Identities=11%  Similarity=0.036  Sum_probs=148.0

Q ss_pred             CCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEE
Q 040833           14 SLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYI   93 (503)
Q Consensus        14 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L   93 (503)
                      .+++++.+.+.++ ++.+...+|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+.. .+......+|.+|++|+.+
T Consensus       111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            3456666666543 454556666664 5777777655 555666666664 577777765 4554555667777777777


Q ss_pred             EccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEEEcccccC
Q 040833           94 CVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHL  172 (503)
Q Consensus        94 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~n~l  172 (503)
                      ++..|.+. .++...+. ..+|+.+.+..+ ++.+...+|.++++|+.+.+..+ +...... |.. .+|+.+.+..   
T Consensus       186 ~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~---  257 (401)
T 4fdw_A          186 DLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN---  257 (401)
T ss_dssp             ECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET---
T ss_pred             ecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC---
Confidence            77766665 66666665 567777777633 55455566666666766666553 2222222 222 3344444321   


Q ss_pred             CCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccc-----cccchhccCCCCCcEEEcc
Q 040833          173 GNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLF-----GNIPSGLRNLVNLEFLHLG  247 (503)
Q Consensus       173 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~ls  247 (503)
                                                  .+.......|...+ +|+.+.+.++.+.     ......|.+|++|+.+++.
T Consensus       258 ----------------------------~i~~I~~~aF~~c~-~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          258 ----------------------------GVTNIASRAFYYCP-ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             ----------------------------TCCEECTTTTTTCT-TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             ----------------------------CccEEChhHhhCCC-CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence                                        12212222333332 4444444433322     2334456666677777766


Q ss_pred             CCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCC-CCCEEECcCCcC
Q 040833          248 GNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQ-NLISLNLSNNNL  323 (503)
Q Consensus       248 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~~  323 (503)
                      + .++.....+|.++.+|+.+.+..+ +..+...+|..+ +|+++++.+|.........|..++ .++.+.+..+.+
T Consensus       309 ~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          309 E-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             T-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             C-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            3 355455566666666776666544 444555666666 667776666666555555555553 556666655543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=9.6e-19  Score=176.63  Aligned_cols=207  Identities=20%  Similarity=0.176  Sum_probs=138.5

Q ss_pred             cCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 040833          236 RNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLIS  315 (503)
Q Consensus       236 ~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  315 (503)
                      ..+++|+.|++++|.++ .+|..+..+++|+.|++++|......+...           ..+...+..+..+..+++|+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhccc
Confidence            44566777777777766 456666666677777765553110000000           000122233444555555555


Q ss_pred             EE-CcCCcCcccCCc------chhc--cccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCC
Q 040833          316 LN-LSNNNLSGTIPT------EVIG--LSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRL  386 (503)
Q Consensus       316 L~-l~~n~~~~~~~~------~~~~--~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  386 (503)
                      |+ ++.|.+. .++.      .+..  ...+ +.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|
T Consensus       414 L~~l~~n~~~-~L~~l~l~~n~i~~l~~~~L-~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L  488 (567)
T 1dce_A          414 VDPMRAAYLD-DLRSKFLLENSVLKMEYADV-RVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCL  488 (567)
T ss_dssp             HCGGGHHHHH-HHHHHHHHHHHHHHHHHTTC-SEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred             Ccchhhcccc-hhhhhhhhcccccccCccCc-eEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCC
Confidence            55 4443322 1110      0111  1124 789999999985 455 888999999999999998 778889999999


Q ss_pred             CEEECCCCcCcccCchhccCCCCCCEEeCCCCcccccc-CccCcCCCCCCeeecCCCcCcccCCCCCc----cCCCCcee
Q 040833          387 EQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRI-PKYLENFPFLQNLNLSFNHFEGEVPIKGV----FSNSSAIS  461 (503)
Q Consensus       387 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~~~l~~l~  461 (503)
                      +.|+|++|.+++ +| .+..+++|+.|+|++|++++.. |..+..+++|+.|++++|++++.+|....    +++|+.|+
T Consensus       489 ~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          489 EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            999999999985 56 7889999999999999998776 88899999999999999999887764432    56676664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=2.4e-16  Score=133.54  Aligned_cols=133  Identities=22%  Similarity=0.233  Sum_probs=83.1

Q ss_pred             CCCCEEECcCCcCc-ccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEE
Q 040833          311 QNLISLNLSNNNLS-GTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQL  389 (503)
Q Consensus       311 ~~L~~L~l~~n~~~-~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  389 (503)
                      ++|++|++++|.+. +.+|..+..++.+ +.|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNL-EFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGC-CEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCC-CEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            45555555555554 3444444555555 5566666655533  445566677777777777765556666667777777


Q ss_pred             ECCCCcCcccC-chhccCCCCCCEEeCCCCccccccC---ccCcCCCCCCeeecCCCcCcc
Q 040833          390 VMNGNFFQGNI-PSSLSSLRGIENLDLSRNNLSGRIP---KYLENFPFLQNLNLSFNHFEG  446 (503)
Q Consensus       390 ~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~l~~n~l~~  446 (503)
                      ++++|.+++.. +..+..+++|++|++++|++++..+   ..+..+++|++|++++|.+..
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            77777776432 2566677777777777777765444   356677777777777777653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=3.4e-16  Score=135.59  Aligned_cols=173  Identities=20%  Similarity=0.279  Sum_probs=110.2

Q ss_pred             CEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCc-chhccccccceeEccCCCCccCCCcchhcCCCCCeEeCC
Q 040833          290 ITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPT-EVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDIS  368 (503)
Q Consensus       290 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  368 (503)
                      ++++++++.++. .|..+.  +++++|++++|.+.+..+. .+..++.+ ++|++++|.+++..+..|..+++|++|+++
T Consensus        11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHL-VKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTC-CEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCC-CEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            456666666542 333222  2666666666666644332 35566666 677777777776667777778888888888


Q ss_pred             CCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCc-cCcCCCCCCeeecCCCcCccc
Q 040833          369 ENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPK-YLENFPFLQNLNLSFNHFEGE  447 (503)
Q Consensus       369 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~  447 (503)
                      +|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|++....+. .+.  ..++...+.++...+.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~  164 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCG  164 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCC
Confidence            8888877777788888888888888888877788888888888888888887643221 010  1122233444445554


Q ss_pred             CCCCCccCCCCceeccCCCCCcc
Q 040833          448 VPIKGVFSNSSAISIDGNDNLCG  470 (503)
Q Consensus       448 ~~~~~~~~~l~~l~~~~n~~~c~  470 (503)
                      .|  ..+......++..+...|.
T Consensus       165 ~P--~~l~~~~l~~l~~~~~~C~  185 (192)
T 1w8a_A          165 AP--SKVRDVQIKDLPHSEFKCS  185 (192)
T ss_dssp             SS--TTTTTSBGGGSCTTTCCCC
T ss_pred             CC--hHHcCCChhhCcHhhcCcC
Confidence            44  3344555555656666664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=2.2e-18  Score=174.04  Aligned_cols=121  Identities=25%  Similarity=0.332  Sum_probs=79.0

Q ss_pred             CCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECC
Q 040833          313 LISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMN  392 (503)
Q Consensus       313 L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  392 (503)
                      |+.|++++|.+++ +|. +..++.+ +.|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|+.|+|+
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L-~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLV-THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTC-CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             ceEEEecCCCCCC-CcC-ccccccC-cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            5555555555552 343 5555555 56666666665 455666677777777777777774 45 67777777777777


Q ss_pred             CCcCcccC-chhccCCCCCCEEeCCCCccccccCcc---CcCCCCCCeeec
Q 040833          393 GNFFQGNI-PSSLSSLRGIENLDLSRNNLSGRIPKY---LENFPFLQNLNL  439 (503)
Q Consensus       393 ~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~~~L~~L~l  439 (503)
                      +|.+++.. |..+..+++|+.|+|++|++++..+..   +..+|+|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            77777655 777777777777788777777554322   234677777754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=5.6e-16  Score=131.27  Aligned_cols=135  Identities=19%  Similarity=0.182  Sum_probs=88.7

Q ss_pred             CCCCCcEEEcccCcCC-CCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcE
Q 040833           14 SLSKLRILAMHRNNLS-GEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNY   92 (503)
Q Consensus        14 ~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~   92 (503)
                      ..++|++|++++|.++ +..|..+..+++|++|++++|.+...  ..+..+++|++|++++|.+...+|..+.++++|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            3466777777777776 45566667777777777777777654  56777777777777777777556666666777777


Q ss_pred             EEccCCCCcccCch-hhhcCCCCCCEEEccCCcccccCC---ccccCCCCCCEEecccCcCcc
Q 040833           93 ICVPVNQLQGSLPS-DLGFTLPNLEVLNLCRNQFTGPIP---ASISNASNLMRLVIAKNGFSG  151 (503)
Q Consensus        93 L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~~~~  151 (503)
                      |++++|.+. .++. ..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+..
T Consensus       100 L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          100 LNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             EECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             EeccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            777777766 4331 223346777777777777763333   256666777777766666544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.64  E-value=1.5e-15  Score=129.85  Aligned_cols=133  Identities=22%  Similarity=0.300  Sum_probs=100.1

Q ss_pred             CCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECC
Q 040833          313 LISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMN  392 (503)
Q Consensus       313 L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  392 (503)
                      .+.++++++.+. .+|..+.  +.+ +.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~--~~l-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP--SSA-TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC--TTC-SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCc-cCCCCCC--CCC-cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            356666666665 3443222  233 677777777775555667778888888888888886666677888888888888


Q ss_pred             CCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833          393 GNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       393 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  449 (503)
                      +|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.+.++
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            888887777777888888899998888887666677888888999999988887665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=3.7e-16  Score=129.47  Aligned_cols=85  Identities=22%  Similarity=0.357  Sum_probs=42.7

Q ss_pred             hhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCccc-CchhccCCCCCCEEeCCCCccccccC---ccCcCC
Q 040833          356 FGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGN-IPSSLSSLRGIENLDLSRNNLSGRIP---KYLENF  431 (503)
Q Consensus       356 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~  431 (503)
                      +..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+   ..+..+
T Consensus        60 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l  139 (149)
T 2je0_A           60 LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL  139 (149)
T ss_dssp             CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC
T ss_pred             hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC
Confidence            44445555555555555543444444455555555555555432 22445555555555555555554433   344555


Q ss_pred             CCCCeeecC
Q 040833          432 PFLQNLNLS  440 (503)
Q Consensus       432 ~~L~~L~l~  440 (503)
                      ++|+.|+++
T Consensus       140 ~~L~~L~l~  148 (149)
T 2je0_A          140 PQLTYLDGY  148 (149)
T ss_dssp             TTCCEETTB
T ss_pred             CCcccccCC
Confidence            555555554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.62  E-value=4.8e-15  Score=126.62  Aligned_cols=130  Identities=17%  Similarity=0.190  Sum_probs=113.5

Q ss_pred             ceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCC
Q 040833          339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRN  418 (503)
Q Consensus       339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  418 (503)
                      +.++++++.++. +|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            689999999984 44333  378999999999999777778899999999999999999777778899999999999999


Q ss_pred             ccccccCccCcCCCCCCeeecCCCcCcccCCC-CCccCCCCceeccCCCCCccc
Q 040833          419 NLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KGVFSNSSAISIDGNDNLCGG  471 (503)
Q Consensus       419 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~l~~~~n~~~c~~  471 (503)
                      ++++..+..+..+++|++|++++|.+++..+. ...+++|+.+++++|++.|.+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            99988888889999999999999999976664 355789999999999999865

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=9.8e-16  Score=126.94  Aligned_cols=128  Identities=20%  Similarity=0.229  Sum_probs=98.0

Q ss_pred             CCCCCcEEEcccCcCC-CCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcE
Q 040833           14 SLSKLRILAMHRNNLS-GEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNY   92 (503)
Q Consensus        14 ~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~   92 (503)
                      ..+++++|++++|.++ +..|..+..+++|++|++++|.+...  ..+..+++|++|++++|.+.+.+|..+.++++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3477888888888887 56777788888888888888888765  66888888888888888888657777777888888


Q ss_pred             EEccCCCCcccCc--hhhhcCCCCCCEEEccCCcccccCC---ccccCCCCCCEEecc
Q 040833           93 ICVPVNQLQGSLP--SDLGFTLPNLEVLNLCRNQFTGPIP---ASISNASNLMRLVIA  145 (503)
Q Consensus        93 L~l~~n~~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~  145 (503)
                      |++++|.+. .++  ..+. .+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        93 L~ls~N~i~-~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIK-DLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCC-SHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCC-ChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            888888876 333  4444 48888888888888875444   467778888887765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.60  E-value=4.8e-16  Score=161.90  Aligned_cols=142  Identities=25%  Similarity=0.295  Sum_probs=78.8

Q ss_pred             CCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhc
Q 040833          279 IPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI  358 (503)
Q Consensus       279 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~  358 (503)
                      .+..+..++.|+.|++++|.+. .++..+..+++|++|++++|.++ .+|..+..++.| +.|+|++|.|+ .+|..|..
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L-~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNL-RVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTC-CEEECTTSCCS-SCCSSGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCC-CEEeCcCCcCC-ccChhhcC
Confidence            3445556666666666666665 33434445666666666666665 556656666666 66666666666 44555666


Q ss_pred             CCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCC-CCCEEeCCCCccccccC
Q 040833          359 LKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLR-GIENLDLSRNNLSGRIP  425 (503)
Q Consensus       359 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~  425 (503)
                      +++|++|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+..+. .+..+++++|.+++..|
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            666666666666665 4455566666666666666666655555543321 11224555555554433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.58  E-value=7e-13  Score=128.52  Aligned_cols=330  Identities=12%  Similarity=0.102  Sum_probs=151.1

Q ss_pred             CcccCCCC-CCCEEECCCCccccCCCccccCCCCCCEEEcccce---eeeeCCccccCCCCCcEEEccCCCCcccCchhh
Q 040833           33 PSSFGNLS-SLEALSASANQFVGQIPETLSQLKRMLYLLLGVNK---LSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDL  108 (503)
Q Consensus        33 ~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  108 (503)
                      ..+|.++. .|+.+.+..+ ++.+...+|.++.+|+.+.+..+.   ++.....+|.++..|+.+.+..+ +. .++...
T Consensus        56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~a  132 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEA  132 (394)
T ss_dssp             TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTT
T ss_pred             HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhh
Confidence            34455542 3555555433 444445555555555555555442   33333445555555555544432 22 344444


Q ss_pred             hcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEEEcccccCCCCCCCCcccccccc
Q 040833          109 GFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHLGNGKKDDLEFVNSLV  187 (503)
Q Consensus       109 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~  187 (503)
                      +..+.+|+.+.+..+ ++......|..+.+|+.+.+..+ +...... +. ...|+.+.+..+...       ....++.
T Consensus       133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-------i~~~af~  202 (394)
T 4gt6_A          133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-------IGTNAFS  202 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-------ECTTTTT
T ss_pred             hhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-------cccchhh
Confidence            444555555555432 22234444555555555555443 1111111 22 234444444332111       1112333


Q ss_pred             CCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCE
Q 040833          188 NASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQR  267 (503)
Q Consensus       188 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~  267 (503)
                      .+..++............ ...+           ...+.........+.....+..+.+... ++.....+|.++..|+.
T Consensus       203 ~c~~l~~~~~~~~~~~~~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~  269 (394)
T 4gt6_A          203 ECFALSTITSDSESYPAI-DNVL-----------YEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLAS  269 (394)
T ss_dssp             TCTTCCEEEECCSSSCBS-SSCE-----------EEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCE
T ss_pred             hccccceecccccccccc-ccee-----------ecccccccccccccccccccceEEcCCc-ceEcccceeeecccccE
Confidence            444444444333222100 0000           0000000000001112223334444322 22234455666666666


Q ss_pred             EEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCC
Q 040833          268 LALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQ  347 (503)
Q Consensus       268 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~  347 (503)
                      +.+..+... +...+|..++.|+.+.+.. .+......+|.+|.+|+++++.++                          
T Consensus       270 i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~--------------------------  321 (394)
T 4gt6_A          270 VKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG--------------------------  321 (394)
T ss_dssp             EECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--------------------------
T ss_pred             Eecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc--------------------------
Confidence            666554432 4455566666666666643 344355556666666666665432                          


Q ss_pred             CccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCcc
Q 040833          348 LNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL  420 (503)
Q Consensus       348 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  420 (503)
                      ++......|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+++.++...   ...+..+.+|+.+.+..+.+
T Consensus       322 v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          322 ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            22233456777777888877654 55455667888888888888876543   24566777888887776654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.57  E-value=8.8e-13  Score=127.82  Aligned_cols=334  Identities=10%  Similarity=0.076  Sum_probs=213.6

Q ss_pred             cccCCCcccCCCC-CCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCc---cccCCCccccCCCCCCEEEcccceeeee
Q 040833            4 LVGKVPGKLGSLS-KLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQ---FVGQIPETLSQLKRMLYLLLGVNKLSGE   79 (503)
Q Consensus         4 ~~~~~~~~~~~~~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n~i~~~   79 (503)
                      ++.+=..||.+++ .|+.+.+..+ ++.+...+|.+|++|+.+.+..+.   +..+...+|..+..|+.+.+..+ +...
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I  128 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI  128 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence            3445567899986 5999999765 777888999999999999998653   66677789999999999988765 4446


Q ss_pred             CCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCC
Q 040833           80 IPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKIL  159 (503)
Q Consensus        80 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l  159 (503)
                      ...+|.++.+|+.+.+..+. . .++...+..+.+|+.+.+..+ ++.....+|. ..+|+.+.+..+...-....+..+
T Consensus       129 ~~~aF~~c~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c  204 (394)
T 4gt6_A          129 DSEAFHHCEELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSEC  204 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTC
T ss_pred             hhhhhhhhccccccccccee-e-eecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccccccchhhhc
Confidence            67889999999999997543 3 677777778999999999765 4545555564 468999988765443333347888


Q ss_pred             CCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCC
Q 040833          160 HKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLV  239 (503)
Q Consensus       160 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  239 (503)
                      ..++...............  .    +............       .+    .. ..+..+.+.. .+.......|.++.
T Consensus       205 ~~l~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~-------~~----~~-~~~~~~~ip~-~v~~i~~~aF~~c~  265 (394)
T 4gt6_A          205 FALSTITSDSESYPAIDNV--L----YEKSANGDYALIR-------YP----SQ-REDPAFKIPN-GVARIETHAFDSCA  265 (394)
T ss_dssp             TTCCEEEECCSSSCBSSSC--E----EEECTTSCEEEEE-------CC----TT-CCCSEEECCT-TEEEECTTTTTTCS
T ss_pred             cccceecccccccccccce--e----ecccccccccccc-------cc----cc-cccceEEcCC-cceEcccceeeecc
Confidence            8888887765544321110  0    0000000000000       00    00 1233333322 12224445678888


Q ss_pred             CCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECc
Q 040833          240 NLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLS  319 (503)
Q Consensus       240 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  319 (503)
                      +|+.+.+..+... ....+|.++..|+.+.+.. .+..+...+|..|.+|+++++..+ ++.+...+|.+|.+|+++.+.
T Consensus       266 ~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip  342 (394)
T 4gt6_A          266 YLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP  342 (394)
T ss_dssp             SCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred             cccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence            8888888765443 5567788888888888864 445466778888889999988764 555677788888888888774


Q ss_pred             CCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCC
Q 040833          320 NNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGN  394 (503)
Q Consensus       320 ~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  394 (503)
                      .+ ++.                         .....|.+|++|+.+++.++....   .++..+.+|+.+.+..+
T Consensus       343 ~s-v~~-------------------------I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          343 SS-VTK-------------------------IPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             TT-CCB-------------------------CCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred             cc-cCE-------------------------EhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence            33 331                         222345555666666666554321   24445556666655544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.57  E-value=1.8e-15  Score=157.55  Aligned_cols=155  Identities=19%  Similarity=0.179  Sum_probs=77.9

Q ss_pred             eCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccC
Q 040833           79 EIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKI  158 (503)
Q Consensus        79 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~  158 (503)
                      ..+..|..++.|+.|++++|.+. .+|..++. +++|++|+|++|.++ .+|..+..+++|+.|+|++|.+...+..+..
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcC
Confidence            33445555556666666665555 55555553 556666666666655 5555555666666666666665543333555


Q ss_pred             CCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCC
Q 040833          159 LHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNL  238 (503)
Q Consensus       159 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  238 (503)
                      +++|++|++++|.+..       ++..+..+++|++|++++|.+.+..|..+.........+++++|.+.+..|.     
T Consensus       292 l~~L~~L~L~~N~l~~-------lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-----  359 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVTT-------LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-----  359 (727)
T ss_dssp             GTTCSEEECCSSCCCC-------CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----
T ss_pred             CCCCCEEECCCCCCCc-------cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-----
Confidence            6666666666665542       2333555666667777777666666665544332233455666665544333     


Q ss_pred             CCCcEEEccCC
Q 040833          239 VNLEFLHLGGN  249 (503)
Q Consensus       239 ~~L~~L~ls~n  249 (503)
                       .|+.|+++.|
T Consensus       360 -~l~~l~l~~n  369 (727)
T 4b8c_D          360 -ERRFIEINTD  369 (727)
T ss_dssp             -C---------
T ss_pred             -ccceeEeecc
Confidence             3444555544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.57  E-value=7.9e-15  Score=125.09  Aligned_cols=134  Identities=20%  Similarity=0.200  Sum_probs=102.3

Q ss_pred             cccCCCCCCcEEEcccCcCCCCCCcccCCCC-CCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCC
Q 040833           10 GKLGSLSKLRILAMHRNNLSGEIPSSFGNLS-SLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLS   88 (503)
Q Consensus        10 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~   88 (503)
                      ..+.++++|++|++++|.++. .+. +..+. +|++|++++|.+.+.  ..|..+++|++|++++|.+....+..|..++
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   88 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             HhcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence            356778889999999998884 454 44444 899999999988865  5788888899999998888865555568888


Q ss_pred             CCcEEEccCCCCcccCch--hhhcCCCCCCEEEccCCcccccCCcc----ccCCCCCCEEecccCcCc
Q 040833           89 SLNYICVPVNQLQGSLPS--DLGFTLPNLEVLNLCRNQFTGPIPAS----ISNASNLMRLVIAKNGFS  150 (503)
Q Consensus        89 ~L~~L~l~~n~~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~~~L~~L~l~~n~~~  150 (503)
                      +|++|++++|.+. .+|.  .+. .+++|++|++++|.++ ..|..    +..+++|+.|++++|...
T Consensus        89 ~L~~L~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           89 DLTELILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             TCCEEECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCEEECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            8888888888886 6665  444 4888888888888887 45553    777888888888777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=5.1e-15  Score=126.31  Aligned_cols=131  Identities=16%  Similarity=0.258  Sum_probs=73.9

Q ss_pred             cCCCCCCEEECcCCcCcccCCcchhccc-cccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCC
Q 040833          308 GKCQNLISLNLSNNNLSGTIPTEVIGLS-SLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRL  386 (503)
Q Consensus       308 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  386 (503)
                      ..+++|++|++++|.+. .++. +..+. .+ +.|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|
T Consensus        16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L-~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQF-DAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCC-GGGGTTCC-SEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             CCcCCceEEEeeCCCCc-hhHH-hhhcCCCC-CEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            34445555555555554 2222 22222 33 5555555555433  345556666677777776664444444666667


Q ss_pred             CEEECCCCcCcccCch--hccCCCCCCEEeCCCCccccccCc----cCcCCCCCCeeecCCCcCc
Q 040833          387 EQLVMNGNFFQGNIPS--SLSSLRGIENLDLSRNNLSGRIPK----YLENFPFLQNLNLSFNHFE  445 (503)
Q Consensus       387 ~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~~~L~~L~l~~n~l~  445 (503)
                      ++|++++|.++ .++.  .+..+++|+.|++++|++... |.    .+..+++|+.|++++|...
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence            77777777665 3343  566667777777777776633 33    3566677777777766654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.54  E-value=4.1e-14  Score=119.66  Aligned_cols=108  Identities=18%  Similarity=0.238  Sum_probs=93.4

Q ss_pred             ceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCC
Q 040833          339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRN  418 (503)
Q Consensus       339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  418 (503)
                      +.+++++|.++. +|..+  .+++++|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus        12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            678888888874 45444  378999999999999887888999999999999999999877778899999999999999


Q ss_pred             ccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833          419 NLSGRIPKYLENFPFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       419 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  449 (503)
                      ++++..+..|..+++|++|++++|++.+.++
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9997777789999999999999999998776

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.51  E-value=9.4e-14  Score=117.81  Aligned_cols=108  Identities=19%  Similarity=0.269  Sum_probs=91.5

Q ss_pred             ceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCC
Q 040833          339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRN  418 (503)
Q Consensus       339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  418 (503)
                      +.+++++|.++ .+|..+.  ++|++|++++|.+++..|..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            57788888886 4455443  78999999999998777888999999999999999999776677889999999999999


Q ss_pred             ccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833          419 NLSGRIPKYLENFPFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       419 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  449 (503)
                      +++...+..|..+++|++|++++|++.+.++
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            9997777778999999999999999997765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.50  E-value=1.4e-13  Score=116.28  Aligned_cols=107  Identities=21%  Similarity=0.218  Sum_probs=96.1

Q ss_pred             CCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCC
Q 040833          362 LGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSF  441 (503)
Q Consensus       362 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  441 (503)
                      .+.+++++|.++ .+|..+.  ++|+.|++++|.+++..+..|..+++|++|+|++|+++...+..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            578999999998 5666553  7899999999999988899999999999999999999988888899999999999999


Q ss_pred             CcCcccCCC-CCccCCCCceeccCCCCCccc
Q 040833          442 NHFEGEVPI-KGVFSNSSAISIDGNDNLCGG  471 (503)
Q Consensus       442 n~l~~~~~~-~~~~~~l~~l~~~~n~~~c~~  471 (503)
                      |++++..+. ...+++|+.+++++||+.|.+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            999987763 667899999999999999975

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.48  E-value=2.7e-13  Score=115.02  Aligned_cols=107  Identities=19%  Similarity=0.236  Sum_probs=95.4

Q ss_pred             CCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCC
Q 040833          362 LGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSF  441 (503)
Q Consensus       362 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  441 (503)
                      -+.+++++|.++ .+|..+.  ++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            368999999997 6666554  7999999999999988899999999999999999999987777889999999999999


Q ss_pred             CcCcccCCC-CCccCCCCceeccCCCCCccc
Q 040833          442 NHFEGEVPI-KGVFSNSSAISIDGNDNLCGG  471 (503)
Q Consensus       442 n~l~~~~~~-~~~~~~l~~l~~~~n~~~c~~  471 (503)
                      |.+++..+. ...+++|+.+++++|++.|.+
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            999977664 666899999999999999875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=5.9e-16  Score=134.89  Aligned_cols=132  Identities=23%  Similarity=0.303  Sum_probs=71.0

Q ss_pred             cccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCC
Q 040833          306 SLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTR  385 (503)
Q Consensus       306 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  385 (503)
                      .+..+++|++|++++|.+.+ +| .+..++.+ ++|++++|.++ .++..+..+++|++|++++|.+++ +| .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L-~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENL-RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTC-CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCC-CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence            44445555555555555542 33 44444444 55555555555 334444445566666666666653 22 3555566


Q ss_pred             CCEEECCCCcCcccCc-hhccCCCCCCEEeCCCCccccccCc----------cCcCCCCCCeeecCCCcCc
Q 040833          386 LEQLVMNGNFFQGNIP-SSLSSLRGIENLDLSRNNLSGRIPK----------YLENFPFLQNLNLSFNHFE  445 (503)
Q Consensus       386 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~~~~L~~L~l~~n~l~  445 (503)
                      |+.|++++|.+++..+ ..+..+++|++|++++|++.+..|.          .+..+++|+.||  +++++
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            6666666666653221 3456666666666666666544332          245566666665  45544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=8.9e-16  Score=133.78  Aligned_cols=135  Identities=24%  Similarity=0.290  Sum_probs=97.8

Q ss_pred             cCCCCCCcEEEcccCcCCCCCCc------ccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCcccc
Q 040833           12 LGSLSKLRILAMHRNNLSGEIPS------SFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIY   85 (503)
Q Consensus        12 ~~~~~~L~~L~l~~n~i~~~~~~------~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~   85 (503)
                      +...++++.++++.+.+.+..|.      .|..+++|++|++++|.+.. +| .+..+++|++|++++|.+. .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            34456666777777777666555      77888888888888888875 45 7788888888888888887 5666677


Q ss_pred             CCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCC-ccccCCCCCCEEecccCcCccc
Q 040833           86 NLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIP-ASISNASNLMRLVIAKNGFSGK  152 (503)
Q Consensus        86 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~  152 (503)
                      .+++|++|++++|.+. .+| .+.. +++|++|++++|.+++..+ ..+..+++|++|++++|.+.+.
T Consensus        91 ~~~~L~~L~L~~N~l~-~l~-~~~~-l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           91 VADTLEELWISYNQIA-SLS-GIEK-LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHHCSEEEEEEEECC-CHH-HHHH-HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             cCCcCCEEECcCCcCC-cCC-cccc-CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            7788888888888876 455 4443 7788888888888773222 3567777888888877777554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.37  E-value=2.8e-10  Score=109.71  Aligned_cols=146  Identities=12%  Similarity=0.082  Sum_probs=76.4

Q ss_pred             cccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccc
Q 040833          258 SIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSL  337 (503)
Q Consensus       258 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l  337 (503)
                      .+..+..++.+.+..+- ..+....|..+..|+.+.+..+ +......+|..+.+|+.+.+..+ +.......|..+..+
T Consensus       212 ~f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             ccccccccceeeeccce-eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            34444444444443332 2233344444555555555443 33344444555555555555332 222223344444444


Q ss_pred             cceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCC
Q 040833          338 SIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRG  409 (503)
Q Consensus       338 ~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  409 (503)
                       +.+.+.++.++......|.++++|+.+.+..+ ++.+...+|.+|++|+.+.+..+ ++.+...+|.++..
T Consensus       289 -~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          289 -TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             -CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             -ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence             55555555555455556777777777777644 54455667777777777777654 55455667776643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.37  E-value=1.8e-10  Score=111.00  Aligned_cols=167  Identities=7%  Similarity=0.028  Sum_probs=107.1

Q ss_pred             cCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccc
Q 040833          260 VDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSI  339 (503)
Q Consensus       260 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~  339 (503)
                      .....+..+.+...... .....+..+..++.+.+..+ +......++..+..|+++.+..+ ++......+..+..+ +
T Consensus       191 ~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l-~  266 (379)
T 4h09_A          191 PAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL-K  266 (379)
T ss_dssp             CTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC-C
T ss_pred             cccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh-c
Confidence            33444455554443322 44455666777777777654 34355667777778888877655 443444555566666 6


Q ss_pred             eeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCc
Q 040833          340 YLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNN  419 (503)
Q Consensus       340 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  419 (503)
                      .+.+..+ +.......|..+++|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+++..+ 
T Consensus       267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-  343 (379)
T 4h09_A          267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-  343 (379)
T ss_dssp             EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-
T ss_pred             ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-
Confidence            6776543 44455566777788888888777777666677888888888888654 55566677888888888887655 


Q ss_pred             cccccCccCcCCCC
Q 040833          420 LSGRIPKYLENFPF  433 (503)
Q Consensus       420 l~~~~~~~~~~~~~  433 (503)
                      ++.+...+|.+++.
T Consensus       344 v~~I~~~aF~~c~~  357 (379)
T 4h09_A          344 ITLIESGAFEGSSI  357 (379)
T ss_dssp             CCEECTTTTTTSSC
T ss_pred             cCEEchhHhhCCCC
Confidence            55556666766643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.35  E-value=6.7e-14  Score=133.75  Aligned_cols=159  Identities=17%  Similarity=0.130  Sum_probs=72.1

Q ss_pred             CCCCEEEccCCcccccCCcccc-----CCCCCCEEEccCCcCcccCCccc-cCCCCCCEEECcCCcCcccCCcchh----
Q 040833          263 YKLQRLALEGNKFWGEIPSSIG-----NLTLLITLNFEENMLEGSIPSSL-GKCQNLISLNLSNNNLSGTIPTEVI----  332 (503)
Q Consensus       263 ~~L~~L~l~~n~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~----  332 (503)
                      +.|+.|++++|.++......+.     ..++|++|++++|.+.......+ ..+++|++|++++|.+.......+.    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            4566777777766543222221     22466666666666543322222 2234566666666655433222221    


Q ss_pred             -ccccccceeEccCCCCccCC----CcchhcCCCCCeEeCCCCcccccC----CccccCCCCCCEEECCCCcCccc----
Q 040833          333 -GLSSLSIYLDLSQNQLNGPL----PSNFGILKNLGAIDISENKLSGQI----PSSIGSCTRLEQLVMNGNFFQGN----  399 (503)
Q Consensus       333 -~~~~l~~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~----  399 (503)
                       ..+.+ ++|++++|.+++..    +..+...++|++|+|++|.+++..    +..+..+++|++|+|++|.+++.    
T Consensus       152 ~~~~~L-~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          152 HDQCQI-TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             STTCCC-CEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             hcCCcc-ceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             12233 55555555554321    112233445555555555544321    23334444555555555555432    


Q ss_pred             CchhccCCCCCCEEeCCCCcccc
Q 040833          400 IPSSLSSLRGIENLDLSRNNLSG  422 (503)
Q Consensus       400 ~~~~~~~l~~L~~L~L~~n~l~~  422 (503)
                      +...+..+++|++|+|++|.+++
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCH
Confidence            12222334455555555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.33  E-value=3.4e-14  Score=135.83  Aligned_cols=136  Identities=17%  Similarity=0.150  Sum_probs=59.0

Q ss_pred             CCCCEEEccCCcccccCCccc-cCCCCCCEEEccCCcCcccCCccc-----cCCCCCCEEECcCCcCccc----CCcchh
Q 040833          263 YKLQRLALEGNKFWGEIPSSI-GNLTLLITLNFEENMLEGSIPSSL-----GKCQNLISLNLSNNNLSGT----IPTEVI  332 (503)
Q Consensus       263 ~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~----~~~~~~  332 (503)
                      +.|+.|++++|.+++.....+ ..+++|++|++++|.+.+.....+     ...++|++|++++|.++..    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            355555555555443222111 123445555555555543322222     1234555555555555421    112223


Q ss_pred             ccccccceeEccCCCCccCC----CcchhcCCCCCeEeCCCCccccc----CCccccCCCCCCEEECCCCcCccc
Q 040833          333 GLSSLSIYLDLSQNQLNGPL----PSNFGILKNLGAIDISENKLSGQ----IPSSIGSCTRLEQLVMNGNFFQGN  399 (503)
Q Consensus       333 ~~~~l~~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~  399 (503)
                      ..+.+ ++|++++|.+++..    ...+...++|++|++++|.+++.    ++..+..+++|++|+|++|.+++.
T Consensus       181 ~~~~L-~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          181 GNTSV-THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             TCSSC-CEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             cCCCc-CEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            33444 55555555554321    22233444555555555555432    122233345555555555555433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.29  E-value=9.3e-12  Score=118.54  Aligned_cols=108  Identities=20%  Similarity=0.168  Sum_probs=83.5

Q ss_pred             ceeEccCC-CCccCCCcchhcCCCCCeEeCCC-CcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCC
Q 040833          339 IYLDLSQN-QLNGPLPSNFGILKNLGAIDISE-NKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLS  416 (503)
Q Consensus       339 ~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  416 (503)
                      ..++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            34667776 676 4555 77777888888885 88887766778888888888888888887777788888888888888


Q ss_pred             CCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833          417 RNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       417 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  449 (503)
                      +|+++...+..|..++ |+.|++++|++.+.+.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence            8888866666666665 8888888888887665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=1.7e-11  Score=116.64  Aligned_cols=107  Identities=21%  Similarity=0.250  Sum_probs=94.0

Q ss_pred             CeEeCCCC-cccccCCccccCCCCCCEEECCC-CcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecC
Q 040833          363 GAIDISEN-KLSGQIPSSIGSCTRLEQLVMNG-NFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLS  440 (503)
Q Consensus       363 ~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  440 (503)
                      ..++.+++ .++ .+|. +..+++|++|+|++ |.+++..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35788888 888 5777 99999999999996 99998888899999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCCCccCCCCceeccCCCCCccc
Q 040833          441 FNHFEGEVPIKGVFSNSSAISIDGNDNLCGG  471 (503)
Q Consensus       441 ~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~  471 (503)
                      +|.+++..+.......|+.|++.+|++.|+|
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLHCSC  119 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCccCCC
Confidence            9999977664333334999999999999976

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.92  E-value=5.8e-10  Score=105.56  Aligned_cols=84  Identities=13%  Similarity=0.221  Sum_probs=54.0

Q ss_pred             cCCCCCeEeCCCCcccccCCccc---cCCCCCCEEECCCCcCcccCch----hccCCCCCCEEeCCCCccccccCccCcC
Q 040833          358 ILKNLGAIDISENKLSGQIPSSI---GSCTRLEQLVMNGNFFQGNIPS----SLSSLRGIENLDLSRNNLSGRIPKYLEN  430 (503)
Q Consensus       358 ~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~  430 (503)
                      .+++|++|++.+|.+++..+..+   ..+++|++|+|+.|.+++....    .+..+++|+.|++++|.+++.....+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            36778888888887764322222   2467888888888887754322    2344688888888888887554444432


Q ss_pred             -CCCCCeeecCCCc
Q 040833          431 -FPFLQNLNLSFNH  443 (503)
Q Consensus       431 -~~~L~~L~l~~n~  443 (503)
                       +  ...++++.++
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             2  4557777776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.86  E-value=1.4e-09  Score=103.00  Aligned_cols=65  Identities=17%  Similarity=0.205  Sum_probs=44.2

Q ss_pred             CCCCCCEEECCCCcCcccCchhc---cCCCCCCEEeCCCCcccccc----CccCcCCCCCCeeecCCCcCcc
Q 040833          382 SCTRLEQLVMNGNFFQGNIPSSL---SSLRGIENLDLSRNNLSGRI----PKYLENFPFLQNLNLSFNHFEG  446 (503)
Q Consensus       382 ~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~  446 (503)
                      .+++|++|++++|.+++..+..+   ..+++|++|+|+.|.+.+..    +..+..+++|+.|++++|.++.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            46788888888887764333332   24678888888888887643    2233456888888888887763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.60  E-value=9.7e-09  Score=87.66  Aligned_cols=19  Identities=26%  Similarity=0.293  Sum_probs=13.0

Q ss_pred             cccCCCCCCEEECcCC-cCc
Q 040833          306 SLGKCQNLISLNLSNN-NLS  324 (503)
Q Consensus       306 ~~~~~~~L~~L~l~~n-~~~  324 (503)
                      .+...+.|++|++++| .+.
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~   50 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIP   50 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCC
T ss_pred             HHhcCCCCCEEEecCCCCCC
Confidence            4556677777777777 665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.58  E-value=2.1e-08  Score=85.59  Aligned_cols=119  Identities=13%  Similarity=0.147  Sum_probs=61.1

Q ss_pred             cccCCCCCCEEEccCC-cCccc----CCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcch
Q 040833          282 SIGNLTLLITLNFEEN-MLEGS----IPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNF  356 (503)
Q Consensus       282 ~~~~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~  356 (503)
                      .+...+.|++|++++| .+...    ....+...++|++|++++|.+.......+                     ...+
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l---------------------~~~L   89 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL---------------------AEML   89 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH---------------------HHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH---------------------HHHH
Confidence            4556677777777777 66543    22334455667777777766653211111                     1112


Q ss_pred             hcCCCCCeEeCCCCccccc----CCccccCCCCCCEEEC--CCCcCccc----CchhccCCCCCCEEeCCCCccc
Q 040833          357 GILKNLGAIDISENKLSGQ----IPSSIGSCTRLEQLVM--NGNFFQGN----IPSSLSSLRGIENLDLSRNNLS  421 (503)
Q Consensus       357 ~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~  421 (503)
                      ...+.|++|+|++|.+++.    +..++...++|++|+|  ++|.+.+.    +...+...++|++|+|++|.+.
T Consensus        90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            2334455555555555432    2334444555666666  55555532    2233344455666666666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.52  E-value=1.7e-08  Score=83.72  Aligned_cols=83  Identities=16%  Similarity=0.148  Sum_probs=52.2

Q ss_pred             CCCeEeCCCCcccccCCccccCCCCCCEEECCCCc-CcccCchhccCC----CCCCEEeCCCCc-cccccCccCcCCCCC
Q 040833          361 NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF-FQGNIPSSLSSL----RGIENLDLSRNN-LSGRIPKYLENFPFL  434 (503)
Q Consensus       361 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~~~~L  434 (503)
                      .|++||+++|.+++.....+.++++|+.|+|++|. +++.....+..+    ++|++|+|++|. +++.....+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            56667777766665555555667777777777763 554444445443    357777777764 665555556666777


Q ss_pred             CeeecCCCc
Q 040833          435 QNLNLSFNH  443 (503)
Q Consensus       435 ~~L~l~~n~  443 (503)
                      ++|++++|+
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            777777775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.39  E-value=5.9e-08  Score=80.47  Aligned_cols=81  Identities=10%  Similarity=0.030  Sum_probs=58.5

Q ss_pred             ceeEccCCCCccCCCcchhcCCCCCeEeCCCCc-ccccCCccccCC----CCCCEEECCCCc-CcccCchhccCCCCCCE
Q 040833          339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENK-LSGQIPSSIGSC----TRLEQLVMNGNF-FQGNIPSSLSSLRGIEN  412 (503)
Q Consensus       339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~----~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  412 (503)
                      +.||+++|.+++.....+..+++|++|+|++|. +++.....+..+    ++|+.|+|++|. +|+.....+..+++|++
T Consensus        64 ~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~  143 (176)
T 3e4g_A           64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY  143 (176)
T ss_dssp             EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred             eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence            677777777766655666778888888888884 665444445543    468888888884 77666666777888888


Q ss_pred             EeCCCCc
Q 040833          413 LDLSRNN  419 (503)
Q Consensus       413 L~L~~n~  419 (503)
                      |+|++|.
T Consensus       144 L~L~~c~  150 (176)
T 3e4g_A          144 LFLSDLP  150 (176)
T ss_dssp             EEEESCT
T ss_pred             EECCCCC
Confidence            8888885

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.33  E-value=1.6e-07  Score=84.12  Aligned_cols=64  Identities=23%  Similarity=0.351  Sum_probs=30.4

Q ss_pred             cCCCCCeEeCCCCcccc--cCCccccCCCCCCEEECCCCcCccc-CchhccCCCCCCEEeCCCCcccc
Q 040833          358 ILKNLGAIDISENKLSG--QIPSSIGSCTRLEQLVMNGNFFQGN-IPSSLSSLRGIENLDLSRNNLSG  422 (503)
Q Consensus       358 ~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~  422 (503)
                      .+++|++|+|++|.+++  .++..+..+++|+.|+|++|.+.+. ....+..+ +|++|+|++|++.+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD  234 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence            34555555555555553  2233344555555555555555532 11112222 55555555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.28  E-value=1e-07  Score=85.38  Aligned_cols=96  Identities=19%  Similarity=0.185  Sum_probs=68.3

Q ss_pred             EeCCCCccc---ccCCccccCCCCCCEEECCCCcCcc--cCchhccCCCCCCEEeCCCCccccc-cCccCcCCCCCCeee
Q 040833          365 IDISENKLS---GQIPSSIGSCTRLEQLVMNGNFFQG--NIPSSLSSLRGIENLDLSRNNLSGR-IPKYLENFPFLQNLN  438 (503)
Q Consensus       365 L~l~~n~l~---~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~  438 (503)
                      ++++.|...   ........++++|+.|+|++|.+++  .++..+..+++|+.|+|++|++++. ....+..+ +|++|+
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~  226 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW  226 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence            566666432   1112222467899999999999997  3456777899999999999999865 12233344 899999


Q ss_pred             cCCCcCcccCCC--------CCccCCCCcee
Q 040833          439 LSFNHFEGEVPI--------KGVFSNSSAIS  461 (503)
Q Consensus       439 l~~n~l~~~~~~--------~~~~~~l~~l~  461 (503)
                      +++|++.+..|.        ...+++|+.|+
T Consensus       227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            999999875542        34467777776

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.54  E-value=3.9e-05  Score=60.60  Aligned_cols=63  Identities=19%  Similarity=0.309  Sum_probs=45.0

Q ss_pred             CEEECCCCcCc-ccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCC
Q 040833          387 EQLVMNGNFFQ-GNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIK  451 (503)
Q Consensus       387 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  451 (503)
                      ..++.+++.++ ..+|..+.  ++|++|+|++|+|+.+.+..|..+++|+.|+|++|++.+.+...
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~   74 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLV   74 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGH
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccH
Confidence            36777777775 23444332  46888888888888777777888888888888888888776543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.50  E-value=6.4e-05  Score=63.50  Aligned_cols=35  Identities=11%  Similarity=0.186  Sum_probs=15.7

Q ss_pred             CCCCeEeCCCCccccc----CCccccCCCCCCEEECCCC
Q 040833          360 KNLGAIDISENKLSGQ----IPSSIGSCTRLEQLVMNGN  394 (503)
Q Consensus       360 ~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n  394 (503)
                      +.|++|+|++|.|++.    +.+++...+.|++|+|++|
T Consensus        98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            4455555555555431    2223333444555555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.33  E-value=0.00015  Score=61.24  Aligned_cols=105  Identities=13%  Similarity=0.152  Sum_probs=53.8

Q ss_pred             ceeEccCC-CCccCC----CcchhcCCCCCeEeCCCCcccccC----CccccCCCCCCEEECCCCcCcccC----chhcc
Q 040833          339 IYLDLSQN-QLNGPL----PSNFGILKNLGAIDISENKLSGQI----PSSIGSCTRLEQLVMNGNFFQGNI----PSSLS  405 (503)
Q Consensus       339 ~~L~l~~n-~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~  405 (503)
                      ++|+|+++ .|.+..    ...+..-+.|++|+|++|.+++..    ...+...+.|++|+|++|.|.+..    .+++.
T Consensus        44 ~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~  123 (197)
T 1pgv_A           44 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTL  123 (197)
T ss_dssp             CEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTT
T ss_pred             cEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHh
Confidence            66666664 555321    222333456666666666665432    223334566666666666666432    23344


Q ss_pred             CCCCCCEEeCCCC---ccccc----cCccCcCCCCCCeeecCCCc
Q 040833          406 SLRGIENLDLSRN---NLSGR----IPKYLENFPFLQNLNLSFNH  443 (503)
Q Consensus       406 ~l~~L~~L~L~~n---~l~~~----~~~~~~~~~~L~~L~l~~n~  443 (503)
                      .-+.|++|+|++|   .+...    +.+.+..-+.|++|+++.|.
T Consensus       124 ~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          124 VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            4455666666544   23321    22334445566666665554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.67  E-value=0.0038  Score=49.02  Aligned_cols=55  Identities=22%  Similarity=0.383  Sum_probs=29.8

Q ss_pred             eEeCCCCccc-ccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCcc
Q 040833          364 AIDISENKLS-GQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL  420 (503)
Q Consensus       364 ~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  420 (503)
                      .++.+++.++ ..+|..+.  ++|+.|+|++|.++...+..|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4445555443 13333322  2466666666666655555566666666666666655

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=85.49  E-value=2.1  Score=31.28  Aligned_cols=43  Identities=19%  Similarity=0.228  Sum_probs=19.6

Q ss_pred             ccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECC
Q 040833            5 VGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSAS   48 (503)
Q Consensus         5 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~   48 (503)
                      +.+-..+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+.
T Consensus         9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~   51 (100)
T 2lz0_A            9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT   51 (100)
T ss_dssp             CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred             CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence            3344444455555555544433 333444444444444444443

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=82.74  E-value=1.7  Score=31.83  Aligned_cols=47  Identities=17%  Similarity=0.173  Sum_probs=27.4

Q ss_pred             cccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCC
Q 040833          274 KFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNN  321 (503)
Q Consensus       274 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  321 (503)
                      .++.+...+|.+|++|+.+.+..+ ++.+...+|..|.+|+.+.+...
T Consensus         7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            344445556666666666666654 33355556666666666666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	503
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-24
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-21
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-19
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  101 bits (251), Expect = 7e-24
 Identities = 84/390 (21%), Positives = 144/390 (36%), Gaps = 33/390 (8%)

Query: 61  SQLKRMLYLLLGVNKLSGEIPFS-IYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLN 119
           + L   +  +LG   ++  +  + +  +++L    + +  + G     + + L NL  +N
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEY-LNNLTQIN 72

Query: 120 LCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-------LKILHKLEWVGISRNHL 172
              NQ T   P  + N + L+ +++  N  +   P           L   +   I     
Sbjct: 73  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 173 GNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIP 232
                      N++ + S L  L        G     +  L+    +  +  +    +  
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 190

Query: 233 SGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITL 292
           S L  L NLE L    NQ +   P  I+    L  L+L GN+       ++ +LT L  L
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDL 246

Query: 293 NFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPL 352
           +   N +    P  L     L  L L  N +S   P     L+ L+   +L  N+     
Sbjct: 247 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLED 299

Query: 353 PSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIEN 412
            S    LKNL  + +  N +S   P  + S T+L++L    N       SSL++L  I  
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINW 355

Query: 413 LDLSRNNLSGRIPKYLENFPFLQNLNLSFN 442
           L    N +S   P  L N   +  L L+  
Sbjct: 356 LSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 87.0 bits (214), Expect = 3e-19
 Identities = 75/388 (19%), Positives = 141/388 (36%), Gaps = 31/388 (7%)

Query: 14  SLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGV 73
           +L++     + + N++  +  +  +L  +  L A       +  + +  L  +  +    
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSN 75

Query: 74  NKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFT-------LPNLEVLNLCRNQFT 126
           N+L+   P    NL+ L  I +  NQ+    P                +  ++  +N   
Sbjct: 76  NQLTDITPLK--NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 127 GPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSL 186
                  SN  + +  +             ++        ++     +   + +  ++ L
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 187 VNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHL 246
              + LE L  ++N    + P     + T L  L +  NQL       L +L NL  L L
Sbjct: 194 AKLTNLESLIATNNQISDITPL---GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 248

Query: 247 GGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSS 306
             NQ +   P  +  L KL  L L  N+     P +     L    N E N  +    S 
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNISPLA----GLTALTNLELNENQLEDISP 302

Query: 307 LGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAID 366
           +   +NL  L L  NN+S   P     L+ L   L  + N+++    S+   L N+  + 
Sbjct: 303 ISNLKNLTYLTLYFNNISDISPVS--SLTKLQ-RLFFANNKVSD--VSSLANLTNINWLS 357

Query: 367 ISENKLSGQIPSSIGSCTRLEQLVMNGN 394
              N++S   P  + + TR+ QL +N  
Sbjct: 358 AGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.7 bits (177), Expect = 2e-14
 Identities = 68/346 (19%), Positives = 114/346 (32%), Gaps = 60/346 (17%)

Query: 12  LGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPE------------- 58
           +  L+ L  +    N L+   P    NL+ L  +  + NQ     P              
Sbjct: 62  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 119

Query: 59  -----------------------TLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICV 95
                                  T+S +  +  L        G     +  L++L  +  
Sbjct: 120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 179

Query: 96  PVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS 155
                       +   L NLE L    NQ +   P  +   +NL  L +  N     + +
Sbjct: 180 LDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IGT 236

Query: 156 LKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLST 215
           L  L  L  + ++ N + N        +  L   ++L  L++  N    + P  +  L+ 
Sbjct: 237 LASLTNLTDLDLANNQISN--------LAPLSGLTKLTELKLGANQISNISP--LAGLTA 286

Query: 216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKF 275
              + +  N     +      NL NL +L L  N  +   P  +  L KLQRL    NK 
Sbjct: 287 LTNLELNENQLEDISPI---SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV 341

Query: 276 WGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNN 321
                SS+ NLT +  L+   N +    P  L     +  L L++ 
Sbjct: 342 --SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.5 bits (140), Expect = 7e-10
 Identities = 39/159 (24%), Positives = 60/159 (37%), Gaps = 29/159 (18%)

Query: 9   PGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIP----------- 57
            G L SL+ L  L +  N +S   P     L+ L  L   ANQ     P           
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE 291

Query: 58  ---------ETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDL 108
                      +S LK + YL L  N +S   P S  +L+ L  +    N++     S L
Sbjct: 292 LNENQLEDISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD--VSSL 347

Query: 109 GFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKN 147
              L N+  L+   NQ +   P  ++N + + +L +   
Sbjct: 348 A-NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.1 bits (126), Expect = 4e-08
 Identities = 53/255 (20%), Positives = 96/255 (37%), Gaps = 22/255 (8%)

Query: 215 TRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNK 274
            ++  L      +      G+  L NL  ++   NQ T   P  + +L KL  + +  N+
Sbjct: 44  DQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 99

Query: 275 FWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNL------------SNNN 322
                P +       +TL   +      + +     +  +S N                 
Sbjct: 100 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 159

Query: 323 LSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGS 382
             G   T++  L++L+    L  +       S    L NL ++  + N++S   P  I  
Sbjct: 160 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI-- 217

Query: 383 CTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFN 442
            T L++L +NGN  +     +L+SL  + +LDL+ N +S   P  L     L  L L  N
Sbjct: 218 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 273

Query: 443 HFEGEVPIKGVFSNS 457
                 P+ G+ + +
Sbjct: 274 QISNISPLAGLTALT 288

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETL 60
           FN +    P  + SL+KL+ L    N +S    SS  NL+++  LSA  NQ     P  L
Sbjct: 316 FNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--L 369

Query: 61  SQLKRMLYLLLGVN 74
           + L R+  L L   
Sbjct: 370 ANLTRITQLGLNDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 92.9 bits (229), Expect = 2e-21
 Identities = 75/274 (27%), Positives = 110/274 (40%), Gaps = 9/274 (3%)

Query: 211 GNLSTRLRILIVGNNQLFGN--IPSGLRNLVNLEFLHLGGN-QFTGRIPGSIVDLYKLQR 267
              + R+  L +    L     IPS L NL  L FL++GG     G IP +I  L +L  
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 268 LALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTI 327
           L +      G IP  +  +  L+TL+F  N L G++P S+    NL+ +    N +SG I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 328 PTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLE 387
           P      S L   + +S+N+L G +P  F  L                           +
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 388 QLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGE 447
             +   +         LS       LDL  N + G +P+ L    FL +LN+SFN+  GE
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNL--NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 448 VPIKGVFSNSSAISIDGNDNLCGGISELHLSTCS 481
           +P  G        +   N  LCG      L  C+
Sbjct: 284 IPQGGNLQRFDVSAYANNKCLCGS----PLPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.9 bits (164), Expect = 4e-13
 Identities = 59/282 (20%), Positives = 100/282 (35%), Gaps = 16/282 (5%)

Query: 107 DLGFTLPNLEVLNLCRNQFTG--PIPASISNASNL--MRLVIAKNGFSGKVPSLKILHKL 162
           D       +  L+L         PIP+S++N   L  + +    N      P++  L +L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 163 EWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIV 222
            ++ I+  ++     D L  + +LV          S N   G LP ++ +L   + I   
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTL------DFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 223 GNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSS 282
           GN        S          + +  N+ TG+IP +  +L                    
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLF 217

Query: 283 IGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLD 342
             +                     +G  +NL  L+L NN + GT+P  +  L  L   L+
Sbjct: 218 GSDKN--TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH-SLN 274

Query: 343 LSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCT 384
           +S N L G +P   G L+       + NK     P  + +CT
Sbjct: 275 VSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP--LPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.5 bits (158), Expect = 2e-12
 Identities = 69/265 (26%), Positives = 106/265 (40%), Gaps = 24/265 (9%)

Query: 13  GSLSKLRILAMHRNNLSG--EIPSSFGNLSSLEALSASAN-QFVGQIPETLSQLKRMLYL 69
               ++  L +   NL     IPSS  NL  L  L        VG IP  +++L ++ YL
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 70  LLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPI 129
            +    +SG IP  +  + +L  +    N L G+LP  +  +LPNL  +    N+ +G I
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAI 165

Query: 130 PASISNASNLMR-LVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDD--------- 179
           P S  + S L   + I++N  +GK+P       L +V +SRN L                
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 180 --------LEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNI 231
                      +  +  +  L  L + +N   G LP+ +  L   L  L V  N L G I
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL-KFLHSLNVSFNNLCGEI 284

Query: 232 PSGLRNLVNLEFLHLGGNQFTGRIP 256
           P    NL   +      N+     P
Sbjct: 285 PQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.4 bits (124), Expect = 5e-08
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 2   NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIP 57
           N + G +P  L  L  L  L +  NNL GEIP   GNL   +  + + N+ +   P
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 48.6 bits (114), Expect = 7e-07
 Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 2/170 (1%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETL 60
           +N L G +P  + SL  L  +    N +SG IP S+G+ S L      +   +       
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

Query: 61  SQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNL 120
                + ++ L  N L G+      +  +   I +  N L   L         NL  L+L
Sbjct: 194 FANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV--GLSKNLNGLDL 251

Query: 121 CRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRN 170
             N+  G +P  ++    L  L ++ N   G++P    L + +    + N
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 48.6 bits (114), Expect = 8e-07
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 64  KRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRN 123
           K +  L L  N++ G +P  +  L  L+ + V  N L G +P   G  L   +V     N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANN 301

Query: 124 QFT--GPIPA 131
           +     P+PA
Sbjct: 302 KCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 2/134 (1%)

Query: 305 SSLGKCQNLISLNLSNNNLSG--TIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNL 362
            +  +   + +L+LS  NL     IP+ +  L  L+       N L GP+P     L  L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 363 GAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSG 422
             + I+   +SG IP  +     L  L  + N   G +P S+SSL  +  +    N +SG
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 423 RIPKYLENFPFLQN 436
            IP    +F  L  
Sbjct: 164 AIPDSYGSFSKLFT 177

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 60/243 (24%), Positives = 94/243 (38%), Gaps = 20/243 (8%)

Query: 8   VPGKLGSLSKLRILAMHRN-NLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRM 66
           +P  L +L  L  L +    NL G IP +   L+ L  L  +     G IP+ LSQ+K +
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127

Query: 67  LYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFT 126
           + L    N LSG +P SI +L +L  I    N++ G++P   G        + + RN+ T
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Query: 127 GPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVN-- 184
           G IP + +N +     +                   + + +++N L           N  
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247

Query: 185 ---------------SLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFG 229
                           L     L  L +S NN  G +P+  GNL  R  +    NN+   
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL-QRFDVSAYANNKCLC 305

Query: 230 NIP 232
             P
Sbjct: 306 GSP 308

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (208), Expect = 5e-19
 Identities = 54/272 (19%), Positives = 90/272 (33%), Gaps = 13/272 (4%)

Query: 103 SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKL 162
           ++P  +       + + L  N+ +    AS     NL  L +  N  +    +      L
Sbjct: 25  AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 163 EWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIV 222
                  ++      D   F        RL  L +        L   +      L+ L +
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGL----GRLHTLHLD-RCGLQELGPGLFRGLAALQYLYL 136

Query: 223 GNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSS 282
            +N L        R+L NL  L L GN+ +     +   L+ L RL L  N+     P +
Sbjct: 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 283 IGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLD 342
             +L  L+TL    N L      +L   + L  L L++N            L +      
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFR 254

Query: 343 LSQNQLNGPLPSNFGILKNLGAIDISENKLSG 374
            S +++   LP     L       ++ N L G
Sbjct: 255 GSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 2e-11
 Identities = 47/237 (19%), Positives = 79/237 (33%), Gaps = 26/237 (10%)

Query: 265 LQRLALEGNKFWGEIPSSIGNLTLLITLNFEENM-------------------------L 299
            QR+ L GN+      +S      L  L    N+                         L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 300 EGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGIL 359
               P++      L +L+L    L    P    GL++L     L  N L       F  L
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL-YLQDNALQALPDDTFRDL 152

Query: 360 KNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNN 419
            NL  + +  N++S     +      L++L+++ N      P +   L  +  L L  NN
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 420 LSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELH 476
           LS    + L     LQ L L+ N +  +   + +++         ++  C     L 
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLA 269

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 8e-11
 Identities = 52/262 (19%), Positives = 92/262 (35%), Gaps = 38/262 (14%)

Query: 18  LRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQI--------------------- 56
            + + +H N +S    +SF    +L  L   +N                           
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 57  ----PETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTL 112
               P T   L R+  L L    L    P     L++L Y+ +  N LQ  LP D    L
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDL 152

Query: 113 PNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVP-SLKILHKLEWVGISRNH 171
            NL  L L  N+ +     +     +L RL++ +N  +   P + + L +L  + +  N+
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 172 LGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNI 231
           L            +L     L+ L+++DN +          L   L+     ++++  ++
Sbjct: 213 LSA------LPTEALAPLRALQYLRLNDNPWVCDCRAR--PLWAWLQKFRGSSSEVPCSL 264

Query: 232 PSGLRNLVNLEFLHLGGNQFTG 253
           P  L      +   L  N   G
Sbjct: 265 PQRLA---GRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 29/172 (16%), Positives = 46/172 (26%), Gaps = 26/172 (15%)

Query: 302 SIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN--------------- 346
           ++P  +        + L  N +S           +L+I    S                 
Sbjct: 25  AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 347 ---------QLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ 397
                    QL    P+ F  L  L  + +    L    P        L+ L +  N  Q
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 398 GNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449
                +   L  + +L L  N +S    +       L  L L  N      P
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 3e-07
 Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 2/135 (1%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETL 60
            N L          L  L  L +H N +S     +F  L SL+ L    N+     P   
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 61  SQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNL 120
             L R++ L L  N LS     ++  L +L Y+ +  N                L+    
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC--RARPLWAWLQKFRG 255

Query: 121 CRNQFTGPIPASISN 135
             ++    +P  ++ 
Sbjct: 256 SSSEVPCSLPQRLAG 270

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 10/196 (5%)

Query: 9   PGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLY 68
           P     L +L  L + R  L    P  F  L++L+ L    N       +T   L  + +
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157

Query: 69  LLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGP 128
           L L  N++S     +   L SL+ + +  N++    P      L  L  L L  N  +  
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFANNLSAL 216

Query: 129 IPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVN 188
              +++    L  L +  N +     +  +   L+    S + +       L        
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL-------- 268

Query: 189 ASRLELLQISDNNFGG 204
            +  +L +++ N+  G
Sbjct: 269 -AGRDLKRLAANDLQG 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.0 bits (201), Expect = 8e-18
 Identities = 50/235 (21%), Positives = 93/235 (39%), Gaps = 6/235 (2%)

Query: 212 NLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE 271
           +L     +L + NN++        +NL NL  L L  N+ +   PG+   L KL+RL L 
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 272 GNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEV 331
            N+           L  L     E   +  S+ + L     ++ L  +    SG      
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGAF 146

Query: 332 IGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVM 391
            G+  LS    ++   +        G+  +L  + +  NK++    +S+     L +L +
Sbjct: 147 QGMKKLSYI-RIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 392 NGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEG 446
           + N        SL++   +  L L+ N L  ++P  L +  ++Q + L  N+   
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.0 bits (175), Expect = 2e-14
 Identities = 47/284 (16%), Positives = 93/284 (32%), Gaps = 20/284 (7%)

Query: 18  LRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLS 77
             +L +  N ++      F NL +L  L    N+     P   + L ++  L L  N+L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 78  GEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNAS 137
                    L  L      + +++ S+ + L      +  L     + +G    +     
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 138 NLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQI 197
            L  + IA    +     L     L  + +  N +            SL   + L  L +
Sbjct: 151 KLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITK------VDAASLKGLNNLAKLGL 202

Query: 198 SDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTG---- 253
           S N+   +   ++ N        +  NN     +P GL +   ++ ++L  N  +     
Sbjct: 203 SFNSISAVDNGSLANTPHLRE--LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 260

Query: 254 --RIPGSIVDLYKLQRLALEGNK--FWGEIPSSIGNLTLLITLN 293
               PG          ++L  N   +W   PS+   + +   + 
Sbjct: 261 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.6 bits (161), Expect = 9e-13
 Identities = 50/300 (16%), Positives = 98/300 (32%), Gaps = 44/300 (14%)

Query: 31  EIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSL 90
           ++P           L    N+           LK +  L+L  NK+S   P +   L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 91  NYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFS 150
             + +  NQL+  LP  +  TL  L V      +    +   ++    +           
Sbjct: 82  ERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 151 GKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAV 210
            +  + + + KL ++ I+  ++                                 +P+  
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITT-------------------------------IPQ-- 167

Query: 211 GNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLAL 270
             L   L  L +  N++     + L+ L NL  L L  N  +    GS+ +   L+ L L
Sbjct: 168 -GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 226

Query: 271 EGNKFWGEIPSSIGNLTLLITLNFEENMLEG------SIPSSLGKCQNLISLNLSNNNLS 324
             NK   ++P  + +   +  +    N +          P    K  +   ++L +N + 
Sbjct: 227 NNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.8 bits (146), Expect = 8e-11
 Identities = 41/278 (14%), Positives = 84/278 (30%), Gaps = 20/278 (7%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETL 60
            N++     G   +L  L  L +  N +S   P +F  L  LE L  S NQ   ++PE +
Sbjct: 40  NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKM 98

Query: 61  SQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNL 120
            +  + L +         +  F+  N   +  +     +  G         +  L  + +
Sbjct: 99  PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRI 157

Query: 121 CRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDL 180
                T  IP  +    +L  L +  N  +    +               +  +   +  
Sbjct: 158 ADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 214

Query: 181 EFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFG------NIPSG 234
                        L ++  NN   +           ++++ + NN +          P  
Sbjct: 215 LANTP-------HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 267

Query: 235 LRNLVNLEFLHLGGN--QFTGRIPGSIVDLYKLQRLAL 270
                +   + L  N  Q+    P +   +Y    + L
Sbjct: 268 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 1e-09
 Identities = 40/188 (21%), Positives = 63/188 (33%), Gaps = 19/188 (10%)

Query: 103 SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVI--AKNGFSGKVPSLKILH 160
           +LP DL     +  +L+L  N       A++   + L +L +  A+        +L +L 
Sbjct: 24  ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG 80

Query: 161 KLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELL-------------QISDNNFGGMLP 207
            L+        L    +         V+ +RL  L                  N    LP
Sbjct: 81  TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140

Query: 208 EAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQR 267
             +   + +L  L + NN L       L  L NL+ L L  N     IP      + L  
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199

Query: 268 LALEGNKF 275
             L GN +
Sbjct: 200 AFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 4e-08
 Identities = 36/186 (19%), Positives = 59/186 (31%), Gaps = 5/186 (2%)

Query: 212 NLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE 271
           +L     IL +  N L+    + L     L  L+L   + T         L  L  L L 
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLS 85

Query: 272 GNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEV 331
            N+             L +       +   S+P    +    +       N   T+P  +
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGL 143

Query: 332 IGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVM 391
           +  +     L L+ N L          L+NL  + + EN L   IP        L    +
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202

Query: 392 NGNFFQ 397
           +GN + 
Sbjct: 203 HGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 35/208 (16%), Positives = 64/208 (30%), Gaps = 50/208 (24%)

Query: 282 SIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYL 341
            +  +   + +N ++  L  ++P  L K  +   L+LS N L       ++  + L+  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLT-QL 60

Query: 342 DLSQNQ---------------------------------------------LNGPLPSNF 356
           +L + +                                             L        
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 357 GILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLS 416
             L  L  + +  N+L    P  +    +LE+L +  N         L+ L  ++ L L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 417 RNNLSGRIPKYLENFPFLQNLNLSFNHF 444
            N+L   IPK       L    L  N +
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 30/173 (17%), Positives = 48/173 (27%), Gaps = 20/173 (11%)

Query: 18  LRILAMHRNNLSGEIPSSFGNLSSLEALSAS-ANQFVGQIPETLSQLKRMLYLLLGVNKL 76
             IL +  N L     ++    + L  L+   A     Q+  TL  L  +      +  L
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 77  SG-------------------EIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEV 117
                                 +P                     +LP  L    P LE 
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152

Query: 118 LNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRN 170
           L+L  N  T      ++   NL  L++ +N            H L +  +  N
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 343 LSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPS 402
              N  +  + S   +  +L  +++S NKL  ++P+      RLE+L+ + N     +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPE 321

Query: 403 SLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQ 435
              +L+    L +  N L    P   E+   L+
Sbjct: 322 LPQNLK---QLHVEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 25/94 (26%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 293 NFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPL 352
            +  N     I S      +L  LN+SNN L   +P        L   L  S N L   +
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLE-RLIASFNHLAE-V 319

Query: 353 PSNFGILKNLGAIDISENKLSGQIPSSIGSCTRL 386
           P     LK L    +  N L  + P    S   L
Sbjct: 320 PELPQNLKQL---HVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 224 NNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSI 283
            N     I S      +LE L++  N+    +P       +L+RL    N    E+P   
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHL-AEVPELP 323

Query: 284 GNLTLLITLNFEENMLEGSIPSSLGKCQNL 313
            NL     L+ E N L    P      ++L
Sbjct: 324 QNLK---QLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 57/321 (17%), Positives = 96/321 (29%), Gaps = 28/321 (8%)

Query: 98  NQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLK 157
             L  SLP       P+LE L    N  T  +P       +L  L++  N          
Sbjct: 48  LGLS-SLPELP----PHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKALSDLPP 98

Query: 158 ILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRL 217
           +L  L         L   +      +  + N S  +L  +  +                L
Sbjct: 99  LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPEL 158

Query: 218 RILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWG 277
           + L         N        + L    +            + +L  L  +  + N    
Sbjct: 159 QNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT 218

Query: 278 EIPSSIGNLTLLITLNFEENMLEG--------SIPSSLGKCQNLISLNLSNNNLSGTIPT 329
                     L +  N+  ++ E            +       L       N  S  I +
Sbjct: 219 LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS 278

Query: 330 EVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQL 389
                 SL   L++S N+L   LP+    L+ L     S N L+ ++P    +   L+QL
Sbjct: 279 LCDLPPSLE-ELNVSNNKLIE-LPALPPRLERL---IASFNHLA-EVPELPQN---LKQL 329

Query: 390 VMNGNFFQG--NIPSSLSSLR 408
            +  N  +   +IP S+  LR
Sbjct: 330 HVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 9/91 (9%)

Query: 1   FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETL 60
            N    ++         L  L +  N L  E+P+       LE L AS N    ++PE  
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL-AEVPELP 323

Query: 61  SQLKRMLYLLLGVNKLSGEIPFSIYNLSSLN 91
             LK    L +  N L  E P    ++  L 
Sbjct: 324 QNLK---QLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 8e-04
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)

Query: 23  MHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPF 82
            + N  S EI S      SLE L+ S N+ + ++P    +L+R   L+   N L+ E+P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPE 321

Query: 83  SIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLN 119
              NL  L+   V  N L+   P     ++ +L + +
Sbjct: 322 LPQNLKQLH---VEYNPLR-EFPDIPE-SVEDLRMNS 353

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 218 RILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWG 277
           R+L + +  L   +   L  L+ +  L L  N+     P ++  L  L+ L  + +    
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVL--QASDNAL 55

Query: 278 EIPSSIGNLTLLITLNFEENMLEG-SIPSSLGKCQNLISLNLSNNNLSG 325
           E    + NL  L  L    N L+  +    L  C  L+ LNL  N+L  
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 3e-06
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 340 YLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGN 399
            L L+   L      +   L  +  +D+S N+L    P+ + +   LE  V+  +     
Sbjct: 2   VLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLE--VLQASDNALE 56

Query: 400 IPSSLSSLRGIENLDLSRNNL-SGRIPKYLENFPFLQNLNLSFNHFEGEVPIKG 452
               +++L  ++ L L  N L      + L + P L  LNL  N    E  I+ 
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 8e-06
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 316 LNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQ 375
           L+L++ +L  T+   +  L  ++ +LDLS N+L    P+    L+ L  +  S+N     
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVT-HLDLSHNRLRALPPA-LAALRCLEVLQASDNA-LEN 57

Query: 376 IPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGR---IPKYLENFP 432
           +          E L+ N    Q      L S   +  L+L  N+L        +  E  P
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 433 FLQNL 437
            + ++
Sbjct: 118 SVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 5/107 (4%)

Query: 244 LHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSI 303
           LHL     T  +   +  L  +  L L  N+     P+ +  L  L  L   +N      
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNA--LEN 57

Query: 304 PSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNG 350
              +     L  L L NN L  +   + +      + L+L  N L  
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 9/111 (8%)

Query: 19  RILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPE--TLSQLKRMLYLLLGVNKL 76
           R+L +   +L+  +      L  +  L  S N+     P    L  L+ +      +  +
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 77  SGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG 127
            G           L       N+LQ S       + P L +LNL  N    
Sbjct: 59  DGVANLPRLQELLLCN-----NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 32/217 (14%), Positives = 64/217 (29%), Gaps = 21/217 (9%)

Query: 237 NLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEE 296
            L N   +  G +  T  +  +  DL  +  L+  G          +  L  LI L  ++
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKD 72

Query: 297 NMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQ----------- 345
           N +    P         + L+ +       I       +       ++            
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 346 --NQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSS 403
                   + +   +        +S         + + + ++L  L  + N      P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 404 LSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLS 440
           L+SL  +  + L  N +S   P  L N   L  + L+
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 26/236 (11%)

Query: 112 LPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNH 171
           L N   +   ++  T  +  + ++   +  L     G +  +  ++ L+ L  + +  N 
Sbjct: 18  LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQ 74

Query: 172 LGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNI 231
           + +          + +  S   L  +S       +       +    +  +        +
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 232 PSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLIT 291
              L  + N+  L    N     I                         + + NL+ L T
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSI-----------------GNAQVSDLTPLANLSKLTT 177

Query: 292 LNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQ 347
           L  ++N +    P  L    NLI ++L NN +S   P  +   S+L   + L+ NQ
Sbjct: 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLF-IVTLT-NQ 227

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 3e-06
 Identities = 18/116 (15%), Positives = 33/116 (28%), Gaps = 27/116 (23%)

Query: 336 SLSI-YLDLSQNQLN-GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNG 393
           SL I  LD+   +L+         +L+    + + +  L+      I             
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI------------- 47

Query: 394 NFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYL-----ENFPFLQNLNLSFNHF 444
                   S+L     +  L+L  N L       +          +Q L+L     
Sbjct: 48  -------SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 5e-06
 Identities = 13/95 (13%), Positives = 32/95 (33%), Gaps = 9/95 (9%)

Query: 312 NLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNG----PLPSNFGILKNLGAIDI 367
           ++ SL++    LS     E++ L      + L    L       + S   +   L  +++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 368 SENKLSGQIPSSIGS-----CTRLEQLVMNGNFFQ 397
             N+L       +         ++++L +      
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 1e-05
 Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 192 LELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQL----FGNIPSGLRNLVNLEFLHLG 247
           ++ L I            +  L  + +++ + +  L      +I S LR    L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 248 GNQFTGRIPGSIVDLYKLQRLALE 271
            N+        ++   +     ++
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQ 87

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 9e-05
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 285 NLTLLITLNFEENMLEG----SIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGL----SS 336
             ++L  L   +  +      S+ ++L    +L  L+LSNN L      +++        
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 337 LSIYLDLSQNQLNGPLPSNFGILK 360
           L   L L     +  +      L+
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 1e-04
 Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 9/77 (11%)

Query: 382 SCTRLEQLVMNGNFFQGN----IPSSLSSLRGIENLDLSRNNLSGRIPKYL-----ENFP 432
             + L  L +       +    + ++L +   +  LDLS N L       L     +   
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 433 FLQNLNLSFNHFEGEVP 449
            L+ L L   ++  E+ 
Sbjct: 427 LLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 1e-04
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 9/78 (11%)

Query: 340 YLDLSQNQLNG----PLPSNFGILKNLGAIDISENKLSGQIPSSIGS-----CTRLEQLV 390
            L L+   ++      L +      +L  +D+S N L       +          LEQLV
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432

Query: 391 MNGNFFQGNIPSSLSSLR 408
           +   ++   +   L +L 
Sbjct: 433 LYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 27/111 (24%)

Query: 239 VNLEFLHLGGNQFT-GRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEEN 297
           ++++ L +   + +  R    +  L + Q + L+           I              
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI-------------- 47

Query: 298 MLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 348
                  S+L     L  LNL +N L        +G+  +   L     ++
Sbjct: 48  ------SSALRVNPALAELNLRSNELGD------VGVHCVLQGLQTPSCKI 86

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 208 EAVGNLSTRLRILIVGNNQL----FGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVD-- 261
           + +G   + LR+L + +  +      ++ + L    +L  L L  N         +V+  
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 262 ---LYKLQRLALEGNKFWGEIPSSIGNL 286
                 L++L L    +  E+   +  L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 5/67 (7%)

Query: 386 LEQLVMNGNFFQGN-IPSSLSSLRGIENLDLSRNNLSGR----IPKYLENFPFLQNLNLS 440
           ++ L +             L  L+  + + L    L+      I   L   P L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 441 FNHFEGE 447
            N     
Sbjct: 64  SNELGDV 70

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 8e-04
 Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 9/79 (11%)

Query: 360 KNLGAIDISENKLSGQ----IPSSIGSCTRLEQLVMNGNFFQGNIPSSLSS-----LRGI 410
             L  + +++  +S      + +++ +   L +L ++ N         L          +
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 411 ENLDLSRNNLSGRIPKYLE 429
           E L L     S  +   L+
Sbjct: 429 EQLVLYDIYWSEEMEDRLQ 447

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 8e-04
 Identities = 13/104 (12%), Positives = 26/104 (25%), Gaps = 15/104 (14%)

Query: 230 NIPSGLRNLVNLEFLHLGGNQFTGR----IPGSIVDLYKLQRLALEGNKFWGEIPSSIG- 284
                 +    L  L L     +      +  +++  + L+ L L  N         +  
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 285 ----NLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLS 324
                  LL  L   +      +   L       +L     +L 
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQ------ALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 9/80 (11%)

Query: 264 KLQRLALEGNKFWGE----IPSSIGNLTLLITLNFEENMLEGSIPSSLGK-----CQNLI 314
            L+ L L            + +++     L  L+   N L  +    L +        L 
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 315 SLNLSNNNLSGTIPTEVIGL 334
            L L +   S  +   +  L
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 10/86 (11%)

Query: 188 NASRLELLQISDNNFGGM----LPEAVGNLSTRLRILIVGNNQLFGNIPSGL-----RNL 238
             S L +L ++D +        L   +    + LR L + NN L       L     +  
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHS-LRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 239 VNLEFLHLGGNQFTGRIPGSIVDLYK 264
             LE L L    ++  +   +  L K
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 7/71 (9%)

Query: 86  NLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG----PIPASISNASNLMR 141
           ++ SL+  C    +L  +  ++L   L   +V+ L     T      I +++     L  
Sbjct: 3   DIQSLDIQC---EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 142 LVIAKNGFSGK 152
           L +  N     
Sbjct: 60  LNLRSNELGDV 70

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.004
 Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 13/112 (11%)

Query: 391 MNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGR----IPKYLENFPFLQNLNLSFNHFEG 446
           +     +            +  L L+  ++S      +   L     L+ L+LS N    
Sbjct: 352 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 411

Query: 447 EVPIKGVFSNSSAISIDGNDNLCGGISELHLSTCSIKESKQSRSRSLKLIIP 498
                G+     ++           + +L L      E  + R ++L+   P
Sbjct: 412 A----GILQLVESVR-----QPGCLLEQLVLYDIYWSEEMEDRLQALEKDKP 454

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 6e-06
 Identities = 31/294 (10%), Positives = 81/294 (27%), Gaps = 27/294 (9%)

Query: 48  SANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSD 107
           +       +   L  L + +           +     ++   + ++ +  + ++ S    
Sbjct: 8   TGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 65

Query: 108 LGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGI 167
           +      L+ L+L   + + PI  +++  SNL+RL                      +  
Sbjct: 66  ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL---------------------NLSG 104

Query: 168 SRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQL 227
                    +  L   + L   +       ++ +    +      ++         N Q 
Sbjct: 105 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 164

Query: 228 FGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEG-NKFWGEIPSSIGNL 286
                   R    +                    L  LQ L+L        E    +G +
Sbjct: 165 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 224

Query: 287 TLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIY 340
             L TL     + +G++        +   L ++ ++ +      +    +  I+
Sbjct: 225 PTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIARPTIGNKKNQEIW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 6e-05
 Identities = 33/277 (11%), Positives = 89/277 (32%), Gaps = 19/277 (6%)

Query: 141 RLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDN 200
            L +        V    +   +      R+ +        + +    +  R++ + +S++
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMD-------QPLAEHFSPFRVQHMDLSNS 56

Query: 201 NFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFL--------HLGGNQFT 252
                    + +  ++L+ L +   +L   I + L    NL  L             Q  
Sbjct: 57  VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 116

Query: 253 GRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQN 312
                 + +L                +      +T L    + +N+ +  + + + +C N
Sbjct: 117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 176

Query: 313 LISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQ-NQLNGPLPSNFGILKNLGAIDISENK 371
           L+ L+LS++ +      +     +   +L LS+   +        G +  L  + +    
Sbjct: 177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 236

Query: 372 LSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLR 408
             G +     +   L+   +N + F      ++ + +
Sbjct: 237 PDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNKK 270

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 15/131 (11%), Positives = 40/131 (30%), Gaps = 26/131 (19%)

Query: 266 QRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSG 325
           Q L L G     ++   + +  ++       + ++  +         +  ++LSN+ +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIA-FRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEV 60

Query: 326 TIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTR 385
                                     L         L  + +   +LS  I +++   + 
Sbjct: 61  ------------------------STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN 96

Query: 386 LEQLVMNGNFF 396
           L +L ++G   
Sbjct: 97  LVRLNLSGCSG 107

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 3/86 (3%)

Query: 365 IDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGR- 423
           +D++   L   +   + S   +       +F    +    S  R ++++DLS + +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIA-FRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 424 IPKYLENFPFLQNLNLSFNHFEGEVP 449
           +   L     LQNL+L        + 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIV 88

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 30/227 (13%), Positives = 60/227 (26%), Gaps = 8/227 (3%)

Query: 103 SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKL 162
            +PSDL     N   L     +       + S   +L ++ I++N     + +    +  
Sbjct: 22  EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 78

Query: 163 EWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIV 222
           +   I      N    + E   +L N   L     +           + +L   L  +  
Sbjct: 79  KLHEIRIEKANNLLYINPEAFQNLPNLQYLL--ISNTGIKHLPDVHKIHSLQKVLLDIQD 136

Query: 223 GNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSS 282
             N       S +        L L  N        +       +    + N         
Sbjct: 137 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDV 196

Query: 283 IGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPT 329
               +  + L+     +       L   + L + +  N      +PT
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL---KKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 29/213 (13%), Positives = 63/213 (29%), Gaps = 5/213 (2%)

Query: 231 IPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLI 290
           IPS L    N   L     +      G+      L+++ +  N     I + + +    +
Sbjct: 23  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 291 TLNFE---ENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQ 347
                    N+L  +  +          L  +          ++  L  + + +  + N 
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140

Query: 348 LNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSL 407
                 S  G+      + +++N +      +       E  + + N  +          
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200

Query: 408 RGIENLDLSRNNLSGRIPKYLENFPFLQNLNLS 440
            G   LD+SR  +       LEN   L+  +  
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 30/223 (13%), Positives = 58/223 (26%), Gaps = 6/223 (2%)

Query: 24  HRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFS 83
             + ++ EIPS      +   L     +         S    +  + +  N +   I   
Sbjct: 16  QESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 72

Query: 84  IYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLV 143
           +++     +               +                    I              
Sbjct: 73  VFSNLPKLHEIRIEKANN---LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129

Query: 144 IAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFG 203
           +  +            +    +      L   K    E  N   N ++L+ L +SDNN  
Sbjct: 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189

Query: 204 GMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHL 246
             LP  V + ++   IL +   ++      GL NL  L     
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 9/35 (25%), Positives = 11/35 (31%)

Query: 12  LGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALS 46
               S   IL + R  +         NL  L A S
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARS 231

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 23/144 (15%), Positives = 38/144 (26%), Gaps = 7/144 (4%)

Query: 226 QLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGN 285
           +L         N V    L L G +    I      L +   +    N+           
Sbjct: 6   ELIEQAAQ-YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDGFPL 61

Query: 286 LTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLS- 344
           L  L TL    N +            +L  L L+NN+L      + +       YL +  
Sbjct: 62  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 121

Query: 345 --QNQLNGPLPSNFGILKNLGAID 366
                           +  +  +D
Sbjct: 122 NPVTNKKHYRLYVIYKVPQVRVLD 145

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 20/135 (14%), Positives = 37/135 (27%), Gaps = 2/135 (1%)

Query: 302 SIPSSLGKCQNLISLNLSNNNLSGTIPTEVI-GLSSLSIYLDLSQNQLNGPLPSNFGILK 360
                L   +NL  L + N      +    + GL  L     + ++ L    P  F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL-TIVKSGLRFVAPDAFHFTP 80

Query: 361 NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL 420
            L  +++S N L      ++   +  E ++             L          +    L
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKL 140

Query: 421 SGRIPKYLENFPFLQ 435
                  L + P   
Sbjct: 141 QCHGQGPLAHMPNAS 155

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 4/100 (4%)

Query: 224 NNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSI 283
            N++          L  L+ L+L  NQ +  +PGS   L  L  L    +  +       
Sbjct: 87  ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN-LASNPFNCNCHLA 145

Query: 284 GNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNL 323
                L   +          PS +   +++   +L ++  
Sbjct: 146 WFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 31/191 (16%), Positives = 57/191 (29%), Gaps = 32/191 (16%)

Query: 231 IPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYK-LQRLALEGNKFWGEIPSSIGNLTLL 289
           IP  +    +   L L  N+        +      L +L L+ N+  G  P++    + +
Sbjct: 23  IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80

Query: 290 ITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLN 349
             L   EN ++            L +LNL +N +S  +P     L+SL+     S     
Sbjct: 81  QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140

Query: 350 GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRG 409
                     + L    ++        PS                            +R 
Sbjct: 141 --NCHLAWFAEWLRKKSLNGGAARCGAPSK---------------------------VRD 171

Query: 410 IENLDLSRNNL 420
           ++  DL  +  
Sbjct: 172 VQIKDLPHSEF 182

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 8e-04
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 16/156 (10%)

Query: 293 NFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLS-QNQLNGP 351
             +   +E  +   + K  +     L    L          L + +I + L+ ++ +   
Sbjct: 3   ELKPEQVE-QLKLIMSKRYDGSQQALDLKGL-----RSDPDLVAQNIDVVLNRRSSMAAT 56

Query: 352 LPSNFGILKNLGAIDISENKLSGQ--IPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRG 409
           L      +  L ++++S N+L     + S +     L+ L ++GN  +            
Sbjct: 57  LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK 116

Query: 410 IENLDLSRNNLSGRIPKY-------LENFPFLQNLN 438
           +E L L  N+LS              E FP L  L+
Sbjct: 117 LEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 40/311 (12%), Positives = 80/311 (25%), Gaps = 29/311 (9%)

Query: 166 GISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNL---STRLRILIV 222
           G S        +D+      L+    ++ + +S N  G      +         L I   
Sbjct: 7   GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 223 GNNQLF----------GNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEG 272
            +                +   L     L  + L  N F       ++D           
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 273 NKFWGEIPSSIGNLTLLITLNFEENMLEGSIPS--SLGKCQNLISLNLSNNNLSGTIPTE 330
                 +    G            N    + P   S+   +N +                
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 331 VIGLSSLSIY---LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLE 387
           ++    +       +  ++ L   L     +       +   +  S  +  ++ S   L 
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 388 QLVMNGNFFQGNIPSSLS------SLRGIENLDLSRNNLSGRIPKYL-----ENFPFLQN 436
           +L +N         +++          G++ L L  N +     + L     E  P L  
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 437 LNLSFNHFEGE 447
           L L+ N F  E
Sbjct: 307 LELNGNRFSEE 317

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 36/204 (17%), Positives = 64/204 (31%), Gaps = 17/204 (8%)

Query: 237 NLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEE 296
                   +L     T  +  +  +L  + ++    +         I  L  +  L    
Sbjct: 22  AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 297 NMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNF 356
           N L    P +          NL N         +V  LSSL     L    L     S+ 
Sbjct: 78  NKLTDIKPLA----------NLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI 127

Query: 357 GILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLS 416
             L +L  ++      +     ++ S       +   +    +I   L+ L  ++NL LS
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLS 186

Query: 417 RNNLSGRIPKYLENFPFLQNLNLS 440
           +N++S    + L     L  L L 
Sbjct: 187 KNHISD--LRALAGLKNLDVLELF 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	503
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.58
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.56
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.55
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.47
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.39
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.29
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.52
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.34
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.03
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.94
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.43
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.41

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1.8e-29  Score=235.72  Aligned_cols=254  Identities=32%  Similarity=0.548  Sum_probs=229.9

Q ss_pred             cCcEEEeecccccc--ccchhccCCCCCcEEEccC-CcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 040833          216 RLRILIVGNNQLFG--NIPSGLRNLVNLEFLHLGG-NQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITL  292 (503)
Q Consensus       216 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~ls~-n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  292 (503)
                      +++.|+++++.+.+  .+|..+.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+.+..+..+..++.|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            58888888888775  3678899999999999987 78888889999999999999999999998888889999999999


Q ss_pred             EccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcc
Q 040833          293 NFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKL  372 (503)
Q Consensus       293 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  372 (503)
                      ++++|.+....|..+..++.++.+++++|.+.+.+|..+..+..+.+.+++++|++.+..+..+..+. ...++++++..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            99999998888899999999999999999999899999999988878999999999988888887765 45799999999


Q ss_pred             cccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCC
Q 040833          373 SGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKG  452 (503)
Q Consensus       373 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  452 (503)
                      .+..|..+..+++++.+++++|.+.+.+ ..+..+++|+.|++++|++++.+|..|.++++|++|++++|+++|.+|..+
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~  288 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             cccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcc
Confidence            8888999999999999999999998655 468889999999999999999999999999999999999999999999877


Q ss_pred             ccCCCCceeccCCCCCccc
Q 040833          453 VFSNSSAISIDGNDNLCGG  471 (503)
Q Consensus       453 ~~~~l~~l~~~~n~~~c~~  471 (503)
                      .+++|+.+++++|+.+||.
T Consensus       289 ~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         289 NLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             TGGGSCGGGTCSSSEEEST
T ss_pred             cCCCCCHHHhCCCccccCC
Confidence            8899999999999999985

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=2.8e-27  Score=227.75  Aligned_cols=190  Identities=30%  Similarity=0.403  Sum_probs=109.2

Q ss_pred             cCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 040833          236 RNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLIS  315 (503)
Q Consensus       236 ~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  315 (503)
                      ..+++++.+++++|.+++..+  +...++|+.+++++|.+.+.  ..+..+++|+.+++++|.+.+..  .+..+++|++
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~  267 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTE  267 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred             ccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCE
Confidence            344445555555554443222  23344555555555554422  23445555555555555554322  2445555666


Q ss_pred             EECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCc
Q 040833          316 LNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF  395 (503)
Q Consensus       316 L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~  395 (503)
                      |+++++.+.+. + .+..++.+ +.++++.|.+.+.  ..+..++++++|++++|++++..  .+..+++|++|++++|.
T Consensus       268 L~l~~~~l~~~-~-~~~~~~~l-~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         268 LKLGANQISNI-S-PLAGLTAL-TNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             EECCSSCCCCC-G-GGTTCTTC-SEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSC
T ss_pred             eeccCcccCCC-C-cccccccc-ccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCC
Confidence            66665555422 1 23344444 5666666666532  33566677777777777776432  36667777777777777


Q ss_pred             CcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCC
Q 040833          396 FQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFN  442 (503)
Q Consensus       396 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n  442 (503)
                      +++ ++ .+.++++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       341 l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         341 VSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            763 33 46777777888887777775543  677777888877776

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=2e-26  Score=221.76  Aligned_cols=343  Identities=27%  Similarity=0.347  Sum_probs=175.1

Q ss_pred             CCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCC
Q 040833           37 GNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLE  116 (503)
Q Consensus        37 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  116 (503)
                      +.+.+|++|+++++.|...  +.++.+++|++|++++|+++. ++ .++++++|++|++++|.+. .++. +. .+++|+
T Consensus        41 ~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~-~i~~-l~-~l~~L~  113 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIA-DITP-LA-NLTNLT  113 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CCGG-GT-TCTTCC
T ss_pred             HHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccc-cccc-cc-cccccc
Confidence            3456677777777777643  346677777777777777763 32 3667777777777777765 3332 33 366777


Q ss_pred             EEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEE
Q 040833          117 VLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQ  196 (503)
Q Consensus       117 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~  196 (503)
                      .|+++++.+++.  ........+.......+.+...... ......+........         .....+..........
T Consensus       114 ~L~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~  181 (384)
T d2omza2         114 GLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISAL-SGLTSLQQLSFGNQV---------TDLKPLANLTTLERLD  181 (384)
T ss_dssp             EEECCSSCCCCC--GGGTTCTTCSEEEEEEEEECCCGGG-TTCTTCSEEEEEESC---------CCCGGGTTCTTCCEEE
T ss_pred             cccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccc---------chhhhhcccccccccc
Confidence            777766665522  1223334444444444433221111 011111111111000         0011122222333333


Q ss_pred             CcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCccc
Q 040833          197 ISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFW  276 (503)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  276 (503)
                      ...+...  .......++ .++.+.++++.+.+..+  +..+++|++|++++|.+++.  ..+..+++|+.+++++|.++
T Consensus       182 ~~~~~~~--~~~~~~~l~-~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~  254 (384)
T d2omza2         182 ISSNKVS--DISVLAKLT-NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS  254 (384)
T ss_dssp             CCSSCCC--CCGGGGGCT-TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             ccccccc--ccccccccc-ccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccC
Confidence            3333222  122233332 56666666665554322  23445666666666665532  24555566666666666655


Q ss_pred             ccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcch
Q 040833          277 GEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNF  356 (503)
Q Consensus       277 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~  356 (503)
                      +..  .+..+++|++++++++.+.+..  .+..++.++.+++++|.+.+  ...+..++.+ +.+++++|++++..  .+
T Consensus       255 ~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l-~~L~ls~n~l~~l~--~l  325 (384)
T d2omza2         255 NLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNL-TYLTLYFNNISDIS--PV  325 (384)
T ss_dssp             CCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTC-SEEECCSSCCSCCG--GG
T ss_pred             CCC--cccccccCCEeeccCcccCCCC--cccccccccccccccccccc--ccccchhccc-CeEECCCCCCCCCc--cc
Confidence            332  2455566666666666655322  24555666666666665542  2234444555 56666666665432  25


Q ss_pred             hcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCC
Q 040833          357 GILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRN  418 (503)
Q Consensus       357 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  418 (503)
                      ..+++|++|++++|++++ ++ .+.++++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       326 ~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         326 SSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             ccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            556666666666666653 22 35556666666666666654332  556666666666655

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=2.3e-27  Score=221.42  Aligned_cols=253  Identities=30%  Similarity=0.500  Sum_probs=218.1

Q ss_pred             CCCEEECcCCcccc--cCchhHhhccccCcEEEeec-cccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCE
Q 040833          191 RLELLQISDNNFGG--MLPEAVGNLSTRLRILIVGN-NQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQR  267 (503)
Q Consensus       191 ~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~  267 (503)
                      +++.|+++++.+.+  .+|..++.++ .|++|++++ |.+.+.+|..+.++++|++|++++|.+.+..+..+..+..|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~-~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCc-cccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            57778888877765  3677888886 899999986 6777778888999999999999999998888888888999999


Q ss_pred             EEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCC-CEEECcCCcCcccCCcchhccccccceeEccCC
Q 040833          268 LALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNL-ISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN  346 (503)
Q Consensus       268 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L-~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n  346 (503)
                      ++++.|.+....|..+..++.++++++++|.+.+..|..+..+..+ +.+++++|++.+..+..+..+...  .++++++
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~--~l~l~~~  207 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA--FVDLSRN  207 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS--EEECCSS
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc--ccccccc
Confidence            9999999888888889999999999999999988888888777765 889999999998888777666544  6899999


Q ss_pred             CCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCc
Q 040833          347 QLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPK  426 (503)
Q Consensus       347 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  426 (503)
                      ...+..+..+..+++++.+++++|.+.+.+ ..+..+++|+.|++++|++++.+|..|.++++|++|+|++|++++.+|.
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            988888888889999999999999998554 4678889999999999999999999999999999999999999988885


Q ss_pred             cCcCCCCCCeeecCCCcCcccC
Q 040833          427 YLENFPFLQNLNLSFNHFEGEV  448 (503)
Q Consensus       427 ~~~~~~~L~~L~l~~n~l~~~~  448 (503)
                       +.++++|+.+++++|+..+-.
T Consensus       287 -~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         287 -GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             -STTGGGSCGGGTCSSSEEEST
T ss_pred             -cccCCCCCHHHhCCCccccCC
Confidence             578899999999999865433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.7e-26  Score=212.11  Aligned_cols=249  Identities=21%  Similarity=0.214  Sum_probs=184.9

Q ss_pred             CCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc-CCcCcccCCccccCCCCCCEEE
Q 040833          239 VNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE-ENMLEGSIPSSLGKCQNLISLN  317 (503)
Q Consensus       239 ~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~-~n~~~~~~~~~~~~~~~L~~L~  317 (503)
                      +++++|+|++|.+++..+.+|.+++.|+++++++|.+....+..+..++.++.+... .+.+....+..+..+++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            456677777777765555667777777777777777766666666667777776654 3445555566677777777777


Q ss_pred             CcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCc
Q 040833          318 LSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ  397 (503)
Q Consensus       318 l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  397 (503)
                      +++|.+....+..+.....+ +.+++++|.+++..+..|..+++|++|++++|.++...+.+|.++++|+.+++++|.++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L-~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAAL-QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCcccccccccccchhccc-chhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence            77777764445555555556 77888888887666677888889999999999998777888899999999999999999


Q ss_pred             ccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCcccCCCCCC
Q 040833          398 GNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHL  477 (503)
Q Consensus       398 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~~~~~~l  477 (503)
                      +..|..|.++++|++|++++|++.+..+..|..+++|++|++++|++.+.++..+...+++......+...|..+.++  
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C~~p~~l--  268 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL--  268 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGG--
T ss_pred             ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHHHHhCcCCCCceEeCCchHH--
Confidence            888899999999999999999998888888899999999999999999888766666667777766666677544333  


Q ss_pred             CCCCCCCcccccc
Q 040833          478 STCSIKESKQSRS  490 (503)
Q Consensus       478 s~~~~~~~~~~~~  490 (503)
                      ++=.+..+.+..+
T Consensus       269 ~g~~l~~l~~~~l  281 (284)
T d1ozna_         269 AGRDLKRLAANDL  281 (284)
T ss_dssp             TTCBGGGSCGGGS
T ss_pred             cCCccccCCHHHC
Confidence            3334444444433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2.7e-24  Score=199.61  Aligned_cols=269  Identities=20%  Similarity=0.271  Sum_probs=178.7

Q ss_pred             CCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEcc
Q 040833           17 KLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVP   96 (503)
Q Consensus        17 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~   96 (503)
                      ..+.++-++.+++ .+|..+.  +++++|++++|.|+.+.+.+|.++++|++|++++|.+....|..|.+++.|++|+++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            4567788888888 6676664  678899999998886666788888899999999988887777888888999999998


Q ss_pred             CCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCCC
Q 040833           97 VNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGK  176 (503)
Q Consensus        97 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  176 (503)
                      +|+++ .+|...   .+.++.|++.+|.+....+..+......+.++...+.......                      
T Consensus        88 ~n~l~-~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~----------------------  141 (305)
T d1xkua_          88 KNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI----------------------  141 (305)
T ss_dssp             SSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB----------------------
T ss_pred             CCccC-cCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCC----------------------
Confidence            88887 677654   4578888888888875555556666677777766654322111                      


Q ss_pred             CCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCC
Q 040833          177 KDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIP  256 (503)
Q Consensus       177 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~  256 (503)
                           ....+..+++|+.+++++|.+.. ++..   .++++++|++++|......+..+..++.+++|++++|.+.+..+
T Consensus       142 -----~~~~~~~l~~L~~l~l~~n~l~~-l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~  212 (305)
T d1xkua_         142 -----ENGAFQGMKKLSYIRIADTNITT-IPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN  212 (305)
T ss_dssp             -----CTTGGGGCTTCCEEECCSSCCCS-CCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT
T ss_pred             -----CccccccccccCccccccCCccc-cCcc---cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccc
Confidence                 11122333444455555444432 2211   12356666666666555555566666667777777776666666


Q ss_pred             ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCcc------ccCCCCCCEEECcCCcCc
Q 040833          257 GSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSS------LGKCQNLISLNLSNNNLS  324 (503)
Q Consensus       257 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~------~~~~~~L~~L~l~~n~~~  324 (503)
                      ..+.++++|++|++++|.++. .|..+..+++|++|++++|.++......      ....++|+.|++++|++.
T Consensus       213 ~~~~~l~~L~~L~L~~N~L~~-lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         213 GSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccccccceeeecccccccc-cccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            666666777777777776663 3556666777777777777766443322      334567888888888764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=3.5e-24  Score=198.84  Aligned_cols=268  Identities=23%  Similarity=0.291  Sum_probs=152.0

Q ss_pred             CCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833          192 LELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE  271 (503)
Q Consensus       192 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~  271 (503)
                      .++++-++..++ .+|..   +|+.+++|++++|.+....+.+|.++++|++|++++|.+....+..|..++.|+.|+++
T Consensus        12 ~~~~~C~~~~L~-~lP~~---l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKD---LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCC-SCCCS---CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCC-ccCCC---CCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            344444444444 23332   23456666666666654444456666666666666666665555566666666666666


Q ss_pred             CCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCc--ccCCcchhccccccceeEccCCCCc
Q 040833          272 GNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLS--GTIPTEVIGLSSLSIYLDLSQNQLN  349 (503)
Q Consensus       272 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~~~~l~~~L~l~~n~l~  349 (503)
                      +|+++.. |..  ..+.++.|...+|.+....+..+.....++.++...+...  ...+..+..++.+ +.+++++|.+.
T Consensus        88 ~n~l~~l-~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L-~~l~l~~n~l~  163 (305)
T d1xkua_          88 KNQLKEL-PEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL-SYIRIADTNIT  163 (305)
T ss_dssp             SSCCSBC-CSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC-CEEECCSSCCC
T ss_pred             CCccCcC-ccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCcccccccccc-CccccccCCcc
Confidence            6665533 221  2345666666666665444444555556666666555332  1223344445555 56666666665


Q ss_pred             cCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCc
Q 040833          350 GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLE  429 (503)
Q Consensus       350 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  429 (503)
                      . .+..  .+++|++|++++|..+...+..|..++.+++|++++|.+++..+.++.++++|++|+|++|+++ .+|..|.
T Consensus       164 ~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~  239 (305)
T d1xkua_         164 T-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA  239 (305)
T ss_dssp             S-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred             c-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccc
Confidence            3 2222  2456666677666666666666666666677777776666666666666667777777777666 3455666


Q ss_pred             CCCCCCeeecCCCcCcccCC-------CCCccCCCCceeccCCCCCccc
Q 040833          430 NFPFLQNLNLSFNHFEGEVP-------IKGVFSNSSAISIDGNDNLCGG  471 (503)
Q Consensus       430 ~~~~L~~L~l~~n~l~~~~~-------~~~~~~~l~~l~~~~n~~~c~~  471 (503)
                      .+++|++|++++|+++....       ......+|+.+++++||+.+..
T Consensus       240 ~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~  288 (305)
T d1xkua_         240 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE  288 (305)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred             cccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCc
Confidence            66677777777766664321       0112344566666666655543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.2e-24  Score=199.60  Aligned_cols=250  Identities=19%  Similarity=0.212  Sum_probs=207.4

Q ss_pred             EEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcc-C
Q 040833          194 LLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE-G  272 (503)
Q Consensus       194 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~-~  272 (503)
                      .+..++++++ .+|..   +|+.+++|++++|.+....+..|.++++|++|++++|.+.+..+..+.....++.+... .
T Consensus        15 ~v~c~~~~L~-~iP~~---ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCC---CCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            4555666665 44543   45688999999999987777789999999999999999998888888888999998775 5


Q ss_pred             CcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCC
Q 040833          273 NKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPL  352 (503)
Q Consensus       273 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~  352 (503)
                      +.+....+..|..+++|++|++++|.+....+..+..+++|+.+++++|.+++..+..+..++.+ +.|++++|.+....
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L-~~L~l~~N~l~~l~  169 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSVP  169 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCEEC
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccch-hhcccccCcccccc
Confidence            55666667789999999999999999987777788889999999999999986656677778887 89999999999888


Q ss_pred             CcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCC
Q 040833          353 PSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFP  432 (503)
Q Consensus       353 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  432 (503)
                      +..|..+++|+++++++|.+++..|..|.++++|++|++++|.+.+..+..|+.+++|++|++++|++....+ ...-..
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~-~~~l~~  248 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWA  248 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG-GHHHHH
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc-chHHHH
Confidence            8889999999999999999998889999999999999999999998888999999999999999999873321 111112


Q ss_pred             CCCeeecCCCcCcccCC
Q 040833          433 FLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       433 ~L~~L~l~~n~l~~~~~  449 (503)
                      .++.+....+.+.+..|
T Consensus       249 ~l~~~~~~~~~~~C~~p  265 (284)
T d1ozna_         249 WLQKFRGSSSEVPCSLP  265 (284)
T ss_dssp             HHHHCCSEECCCBEEES
T ss_pred             HHHhCcCCCCceEeCCc
Confidence            35566667777777665

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1e-23  Score=191.18  Aligned_cols=206  Identities=22%  Similarity=0.213  Sum_probs=158.6

Q ss_pred             cCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 040833          236 RNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLIS  315 (503)
Q Consensus       236 ~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  315 (503)
                      .....+.+++.+++.++. +|..+.  +.+++|++++|.+++..+..|..+++|++|++++|.++...  .+..+++|++
T Consensus         7 ~~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~   81 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGT   81 (266)
T ss_dssp             ECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCE
T ss_pred             cccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--cccccccccc
Confidence            344566778888888883 455443  47889999999888777777888899999999999887443  3467888899


Q ss_pred             EECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCc
Q 040833          316 LNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF  395 (503)
Q Consensus       316 L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~  395 (503)
                      |++++|++. ..+..+..++.+ +.+++++|.+....+..+..+.++++|++++|.++...+..+..+++|+.+++++|+
T Consensus        82 L~Ls~N~l~-~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          82 LDLSHNQLQ-SLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTC-CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccccccccc-cccccccccccc-ccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc
Confidence            999888887 456667777777 788888888877667777777888888888888876666677778888888888888


Q ss_pred             CcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833          396 FQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       396 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  449 (503)
                      +++..++.|..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++.+.+.
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             ccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            88777777788888888888888887 556666677888888888888877654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.1e-23  Score=185.52  Aligned_cols=204  Identities=24%  Similarity=0.220  Sum_probs=135.5

Q ss_pred             CCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccce
Q 040833          261 DLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIY  340 (503)
Q Consensus       261 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~  340 (503)
                      ....+.+++.+++.++. +|..+.  +.+++|++++|.+++..+.+|..+++|++|++++|+++ .++ .+..++.+ +.
T Consensus         8 ~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L-~~   81 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVL-GT   81 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTC-CE
T ss_pred             ccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccc-cc
Confidence            34455566777776663 344332  46777777777777665566777777777777777776 333 23455666 77


Q ss_pred             eEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCcc
Q 040833          341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL  420 (503)
Q Consensus       341 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  420 (503)
                      |++++|+++ ..+..+..+++|+.|++++|.+.+..+..+..++++++|++++|.++...+..+..+++++.+++++|++
T Consensus        82 L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence            777777776 3345566677777777777777666666666777777777777777766666666777777777777777


Q ss_pred             ccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCccc
Q 040833          421 SGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGG  471 (503)
Q Consensus       421 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~  471 (503)
                      +...+..|..+++|++|+|++|+++..++.....++|+.++++||||.|+|
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             cccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCCCc
Confidence            766666677777777777777777744444444566777777777777764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.8e-23  Score=202.02  Aligned_cols=89  Identities=19%  Similarity=0.142  Sum_probs=51.7

Q ss_pred             cCCCCCeEeCCCCccccc----CCccc-cCCCCCCEEECCCCcCccc----CchhccCCCCCCEEeCCCCccccccCcc-
Q 040833          358 ILKNLGAIDISENKLSGQ----IPSSI-GSCTRLEQLVMNGNFFQGN----IPSSLSSLRGIENLDLSRNNLSGRIPKY-  427 (503)
Q Consensus       358 ~~~~L~~L~l~~n~l~~~----~~~~~-~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~-  427 (503)
                      ..++|++|+|++|.+++.    ++..+ ...+.|++|+|++|.+++.    +.+.+..+++|++|+|++|++++..... 
T Consensus       338 ~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l  417 (460)
T d1z7xw1         338 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL  417 (460)
T ss_dssp             HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHH
T ss_pred             cccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHH
Confidence            445677777777766532    12222 2345677777777777642    2344555677777777777776432222 


Q ss_pred             ---Cc-CCCCCCeeecCCCcCcc
Q 040833          428 ---LE-NFPFLQNLNLSFNHFEG  446 (503)
Q Consensus       428 ---~~-~~~~L~~L~l~~n~l~~  446 (503)
                         +. ....|+.|++.+|.+..
T Consensus       418 ~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         418 VESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHHHhCCCccCEEECCCCCCCH
Confidence               22 23457777777777653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=1.8e-17  Score=156.45  Aligned_cols=94  Identities=27%  Similarity=0.360  Sum_probs=49.0

Q ss_pred             CCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEc
Q 040833           41 SLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNL  120 (503)
Q Consensus        41 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  120 (503)
                      ++++|+++++.++ .+|+.   .++|++|++++|+++ .+|..   ..+|+.|++++|.+. .++.    -.+.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~----lp~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh----hccccccccc
Confidence            4666666666665 34432   345666666666665 44433   235556666666554 3332    1234556666


Q ss_pred             cCCcccccCCccccCCCCCCEEecccCcC
Q 040833          121 CRNQFTGPIPASISNASNLMRLVIAKNGF  149 (503)
Q Consensus       121 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  149 (503)
                      ++|.++ .+|. +..+++|++++++++.+
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCC
T ss_pred             cccccc-cccc-hhhhccceeeccccccc
Confidence            655555 3332 34455555555555444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=5.4e-17  Score=153.06  Aligned_cols=314  Identities=27%  Similarity=0.413  Sum_probs=159.7

Q ss_pred             CCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCC-CCCcEEE
Q 040833           16 SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNL-SSLNYIC   94 (503)
Q Consensus        16 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~   94 (503)
                      .++++|+++++.++ .+|+.   .++|++|++++|.++ .+|+.   ..+|+.|++++|+++ .++    .+ +.|++|+
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~----~lp~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALS----DLPPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCC----SCCTTCCEEE
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhh----hhcccccccc
Confidence            35778888888877 45643   467788888888777 44543   346778888887776 232    22 3577888


Q ss_pred             ccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCC
Q 040833           95 VPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGN  174 (503)
Q Consensus        95 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~  174 (503)
                      +++|.+. .+|. .. .+++|++|+++++.++ ..+.   ....+..+.+..+.... ...+..++              
T Consensus       105 L~~n~l~-~lp~-~~-~l~~L~~L~l~~~~~~-~~~~---~~~~l~~l~~~~~~~~~-~~~l~~l~--------------  162 (353)
T d1jl5a_         105 VSNNQLE-KLPE-LQ-NSSFLKIIDVDNNSLK-KLPD---LPPSLEFIAAGNNQLEE-LPELQNLP--------------  162 (353)
T ss_dssp             CCSSCCS-SCCC-CT-TCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSS-CCCCTTCT--------------
T ss_pred             ccccccc-cccc-hh-hhccceeecccccccc-cccc---ccccccchhhccccccc-cccccccc--------------
Confidence            8888776 6664 23 3778888888777665 2221   23344444444332211 11122233              


Q ss_pred             CCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCccccc
Q 040833          175 GKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGR  254 (503)
Q Consensus       175 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~  254 (503)
                                      .++.++++++..... +..    ....+.+......+. ..+ .+..++.++.+++++|.... 
T Consensus       163 ----------------~l~~L~l~~n~~~~~-~~~----~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-  218 (353)
T d1jl5a_         163 ----------------FLTAIYADNNSLKKL-PDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-  218 (353)
T ss_dssp             ----------------TCCEEECCSSCCSSC-CCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-
T ss_pred             ----------------cceeccccccccccc-ccc----ccccccccccccccc-ccc-cccccccccccccccccccc-
Confidence                            333333333332211 000    001222222222221 111 12334444444444443321 


Q ss_pred             CCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhcc
Q 040833          255 IPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGL  334 (503)
Q Consensus       255 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  334 (503)
                      .                        +   ....++..+.+..+.+... +   ...+.+...++..+.+.+     +..+
T Consensus       219 ~------------------------~---~~~~~l~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~-----l~~l  262 (353)
T d1jl5a_         219 L------------------------P---DLPPSLEALNVRDNYLTDL-P---ELPQSLTFLDVSENIFSG-----LSEL  262 (353)
T ss_dssp             C------------------------C---SCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSE-----ESCC
T ss_pred             c------------------------c---ccccccccccccccccccc-c---cccccccccccccccccc-----cccc
Confidence            1                        1   1123344444444443311 1   112334444444443331     1112


Q ss_pred             ccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEe
Q 040833          335 SSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLD  414 (503)
Q Consensus       335 ~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  414 (503)
                      +......++..+.+.+.    ...+++|++|++++|+++ .+|..   +++|++|++++|.++ .+|.   .+++|++|+
T Consensus       263 ~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~  330 (353)
T d1jl5a_         263 PPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLH  330 (353)
T ss_dssp             CTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEE
T ss_pred             cchhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-cccc---ccCCCCEEE
Confidence            22223445555555422    223567888888888887 45543   567888888888887 4443   246788888


Q ss_pred             CCCCccccccCccCcCCCCCCeeecC
Q 040833          415 LSRNNLSGRIPKYLENFPFLQNLNLS  440 (503)
Q Consensus       415 L~~n~l~~~~~~~~~~~~~L~~L~l~  440 (503)
                      +++|+++ .+|..   ..+|+.|.+.
T Consensus       331 L~~N~L~-~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         331 VEYNPLR-EFPDI---PESVEDLRMN  352 (353)
T ss_dssp             CCSSCCS-SCCCC---CTTCCEEECC
T ss_pred             CcCCcCC-CCCcc---ccccCeeECc
Confidence            8888887 44432   2456666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.1e-21  Score=188.63  Aligned_cols=377  Identities=17%  Similarity=0.100  Sum_probs=187.7

Q ss_pred             CCCEEEcccceeeeeC-CccccCCCCCcEEEccCCCCccc----CchhhhcCCCCCCEEEccCCcccccC----Ccccc-
Q 040833           65 RMLYLLLGVNKLSGEI-PFSIYNLSSLNYICVPVNQLQGS----LPSDLGFTLPNLEVLNLCRNQFTGPI----PASIS-  134 (503)
Q Consensus        65 ~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~-  134 (503)
                      +|+.||++.++++... .+.+..+++++.|++++|.+++.    +...+. .+++|++|++++|.++...    ...+. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~-~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR-VNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHH-TCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHh-cCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            4667777777766321 22344566666777777766532    222222 3666666666666664211    11111 


Q ss_pred             CCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhc-
Q 040833          135 NASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNL-  213 (503)
Q Consensus       135 ~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-  213 (503)
                      ...+|++|++++|.+.....                         ..+...+..+++|++|++++|.+.......+... 
T Consensus        82 ~~~~L~~L~L~~n~it~~~~-------------------------~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l  136 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGC-------------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL  136 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGH-------------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred             CCCCCCEEECCCCCcccccc-------------------------ccccchhhccccccccccccccchhhhhhhhhhcc
Confidence            12345555555555432210                         0122333444555555555554442221111110 


Q ss_pred             ---cccCcEEEeeccccccc----cchhccCCCCCcEEEccCCccccc----CCccc-cCCCCCCEEEccCCcccccC--
Q 040833          214 ---STRLRILIVGNNQLFGN----IPSGLRNLVNLEFLHLGGNQFTGR----IPGSI-VDLYKLQRLALEGNKFWGEI--  279 (503)
Q Consensus       214 ---~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~n~~~~~----~~~~~-~~~~~L~~L~l~~n~~~~~~--  279 (503)
                         .................    ....+.....++.++++++.....    ....+ ........+++.++......  
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~  216 (460)
T d1z7xw1         137 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR  216 (460)
T ss_dssp             TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred             cccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence               01112222222211110    011123344555666655543311    00001 11223445555555443211  


Q ss_pred             --CccccCCCCCCEEEccCCcCccc-----CCccccCCCCCCEEECcCCcCcccCC----cchhccccccceeEccCCCC
Q 040833          280 --PSSIGNLTLLITLNFEENMLEGS-----IPSSLGKCQNLISLNLSNNNLSGTIP----TEVIGLSSLSIYLDLSQNQL  348 (503)
Q Consensus       280 --~~~~~~~~~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~l~~~L~l~~n~l  348 (503)
                        ...+...+.++.+++.+|.+...     ..........++.+++++|.+.....    ..+...+.+ +.+++++|.+
T Consensus       217 ~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l-~~l~l~~n~i  295 (460)
T d1z7xw1         217 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL-KELSLAGNEL  295 (460)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC-CEEECTTCCC
T ss_pred             cccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence              11233456666666666654321     11223345567777777766542211    122333444 6677777766


Q ss_pred             ccCCCcch-----hcCCCCCeEeCCCCcccccCC----ccccCCCCCCEEECCCCcCcccC----chhcc-CCCCCCEEe
Q 040833          349 NGPLPSNF-----GILKNLGAIDISENKLSGQIP----SSIGSCTRLEQLVMNGNFFQGNI----PSSLS-SLRGIENLD  414 (503)
Q Consensus       349 ~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~----~~~~~-~l~~L~~L~  414 (503)
                      .+.....+     .....|+.+++++|.++....    ..+..+++|++|+|++|.+++..    +..+. ..+.|++|+
T Consensus       296 ~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~  375 (460)
T d1z7xw1         296 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW  375 (460)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             cccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEE
Confidence            54222211     123578888998888775432    23445678999999999887532    23332 457799999


Q ss_pred             CCCCccccc----cCccCcCCCCCCeeecCCCcCcccCC------CCCccCCCCceeccCCCCC
Q 040833          415 LSRNNLSGR----IPKYLENFPFLQNLNLSFNHFEGEVP------IKGVFSNSSAISIDGNDNL  468 (503)
Q Consensus       415 L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~------~~~~~~~l~~l~~~~n~~~  468 (503)
                      |++|++++.    +...+..+++|++|++++|+++..-.      ....-..|+.+++.+|.+.
T Consensus       376 Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         376 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             CCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            999998754    33445667889999999998864211      0111235777777766554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.4e-19  Score=156.00  Aligned_cols=219  Identities=17%  Similarity=0.154  Sum_probs=130.7

Q ss_pred             cEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCccccc-CCccccCCCCCCEEEccC
Q 040833          218 RILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGE-IPSSIGNLTLLITLNFEE  296 (503)
Q Consensus       218 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~  296 (503)
                      +.++.++..++ .+|..+  .+++++|++++|.++...+.+|.++++|++|++++|.+.+. .+..|..++.++++.+.+
T Consensus        11 ~~i~c~~~~l~-~iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            45555555544 333322  13566677776666655555666667777777776665543 334566667777776643


Q ss_pred             -CcCcccCCccccCCCCCCEEECcCCcCcccCCcc-hhccccccceeEccCCCCccCCCcchhcCC-CCCeEeCCCCccc
Q 040833          297 -NMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTE-VIGLSSLSIYLDLSQNQLNGPLPSNFGILK-NLGAIDISENKLS  373 (503)
Q Consensus       297 -n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~  373 (503)
                       +.+....+..+..+++|+++++++|.+....+.. +..+..+ ..+...++.+.......|..++ .++.|++++|.++
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l-~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV-LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCE-EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccccc-ccccccccccccccccccccccccceeeeccccccc
Confidence             4455555566677777777777777665332222 2222333 4445555566554445555443 6777788888777


Q ss_pred             ccCCccccCCCCCCE-EECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCC
Q 040833          374 GQIPSSIGSCTRLEQ-LVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSF  441 (503)
Q Consensus       374 ~~~~~~~~~~~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  441 (503)
                      +..+..+.. .++++ +++++|.+++..+..|.++++|++|+|++|+++...+..|.+++.|+.+++.+
T Consensus       167 ~i~~~~~~~-~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         167 EIHNCAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             EECTTTTTT-CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             ccccccccc-hhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            554444443 44443 45666777755556677888888888888888766666677777777766654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1e-17  Score=147.33  Aligned_cols=203  Identities=24%  Similarity=0.293  Sum_probs=130.2

Q ss_pred             EEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcC
Q 040833          220 LIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENML  299 (503)
Q Consensus       220 L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  299 (503)
                      ++++.+.+.+..  .+..+.+|++|++.+|.++..  ..+..+++|++|++++|.+.+..  .+..+++++.+++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccc
Confidence            334444444322  234455677777777776633  24666777777777777766432  366677777777777766


Q ss_pred             cccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCcc
Q 040833          300 EGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSS  379 (503)
Q Consensus       300 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  379 (503)
                      +..  ..+.++++|+.++++++...+.  ..+...+.. +.+.++++.+...  ..+..+++|++|++++|.+++.  ..
T Consensus        98 ~~i--~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~-~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~  168 (227)
T d1h6ua2          98 KNV--SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNL-QVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TP  168 (227)
T ss_dssp             SCC--GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTC-CEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GG
T ss_pred             ccc--cccccccccccccccccccccc--chhccccch-hhhhchhhhhchh--hhhccccccccccccccccccc--hh
Confidence            532  2466677777777777765522  223334444 6677777766533  2356677888888888877633  23


Q ss_pred             ccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCC
Q 040833          380 IGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSF  441 (503)
Q Consensus       380 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  441 (503)
                      +.++++|++|++++|.+++.  ..+.++++|++|+|++|++++..  .++++++|+.|++++
T Consensus       169 l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             hcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            67778888888888887743  23677888888888888887543  367788888888753

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=1.3e-18  Score=148.63  Aligned_cols=131  Identities=23%  Similarity=0.337  Sum_probs=65.5

Q ss_pred             ceeEccCCCCcc-CCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCC
Q 040833          339 IYLDLSQNQLNG-PLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSR  417 (503)
Q Consensus       339 ~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  417 (503)
                      ++|+|++|+|+. .....|..+++|++|++++|.+....+..|..+++|++|++++|+++...+.+|.++++|++|+|++
T Consensus        32 ~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~  111 (192)
T d1w8aa_          32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD  111 (192)
T ss_dssp             SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred             CEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCC
Confidence            444444444432 2233445555555555555555544555555555555555555555544455555555555555555


Q ss_pred             CccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCc
Q 040833          418 NNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLC  469 (503)
Q Consensus       418 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c  469 (503)
                      |+|+...+..|..+++|+++++++|++.+.+...+....++...+.++...|
T Consensus       112 N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c  163 (192)
T d1w8aa_         112 NQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARC  163 (192)
T ss_dssp             SCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBB
T ss_pred             ccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEe
Confidence            5555555555555555555555555555444332222333333333333333

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.9e-17  Score=145.62  Aligned_cols=203  Identities=22%  Similarity=0.308  Sum_probs=150.7

Q ss_pred             EECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCc
Q 040833          195 LQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNK  274 (503)
Q Consensus       195 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~  274 (503)
                      ++++.+++.+..  .+.++. +|+.|.+.+|.+...  ..+..+++|++|++++|.+.+..  .+..+++++.+++++|.
T Consensus        24 ~~l~~~~~~d~~--~~~~l~-~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLD-GITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNP   96 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHH-TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCC
T ss_pred             HHhCCCCcCCcC--CHHHcC-CcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccc
Confidence            344455554432  234443 788888888887743  34778888888888888887543  37788888888888888


Q ss_pred             ccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCc
Q 040833          275 FWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPS  354 (503)
Q Consensus       275 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~  354 (503)
                      ++..  ..+..+++|+.++++++.....  ..+...+.++.+.++.+.+...  ..+...+.+ +++++++|.+.+.  .
T Consensus        97 ~~~i--~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L-~~L~l~~n~~~~~--~  167 (227)
T d1h6ua2          97 LKNV--SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNL-QYLSIGNAQVSDL--T  167 (227)
T ss_dssp             CSCC--GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC-CEEECCSSCCCCC--G
T ss_pred             cccc--cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhcccccc-ccccccccccccc--h
Confidence            7643  3577888899999888876632  3456778888888888877632  335566677 8899999888743  3


Q ss_pred             chhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCC
Q 040833          355 NFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSR  417 (503)
Q Consensus       355 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  417 (503)
                      .+..+++|++|++++|.+++. + .+.++++|++|++++|++++. + .++++++|++|++++
T Consensus       168 ~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         168 PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            478899999999999998753 3 478899999999999999854 3 478999999999863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.1e-17  Score=148.91  Aligned_cols=219  Identities=16%  Similarity=0.106  Sum_probs=153.7

Q ss_pred             CEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccc-cCCccccCCCCCCEEEcc
Q 040833          193 ELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTG-RIPGSIVDLYKLQRLALE  271 (503)
Q Consensus       193 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~-~~~~~~~~~~~L~~L~l~  271 (503)
                      +.++.++..++ .+|..   +++++++|++++|.+....+..|.++++|++|++++|.+.. ..+.+|..++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~---l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSD---LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSC---SCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCC---CCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45666666665 44433   24578888888888876666678888899999999887764 345567888888888876


Q ss_pred             C-CcccccCCccccCCCCCCEEEccCCcCcccCCc-cccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCc
Q 040833          272 G-NKFWGEIPSSIGNLTLLITLNFEENMLEGSIPS-SLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLN  349 (503)
Q Consensus       272 ~-n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~  349 (503)
                      . +.+....+..|..+++|+++++++|.+....+. .+..+..++.+...++.+....+..+.+++...+.+++++|+++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            5 566666777788889999999998888744332 23334555555666667765555666666654478899999888


Q ss_pred             cCCCcchhcCCCCCeE-eCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCC
Q 040833          350 GPLPSNFGILKNLGAI-DISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLS  416 (503)
Q Consensus       350 ~~~~~~~~~~~~L~~L-~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  416 (503)
                      ......|. .+++.++ ++++|.+++..+..|.++++|++|++++|+++...+..|.++++|+.+++.
T Consensus       167 ~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         167 EIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             EECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             cccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            65554444 4555555 567788886656678899999999999999986656667776666665554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=6.8e-18  Score=144.15  Aligned_cols=174  Identities=20%  Similarity=0.244  Sum_probs=115.8

Q ss_pred             CEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccC-CcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCC
Q 040833          290 ITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTI-PTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDIS  368 (503)
Q Consensus       290 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  368 (503)
                      ++++.+++.++ .+|..+  .+++++|++++|++++.. +..|..++.+ +.|++++|.+....+..|..+++|++|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L-~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHL-VKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTC-CEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceE-eeeeccccccccccccccccccccceeeec
Confidence            45666666665 333333  246677777777765433 3445566666 677777777776667777777888888888


Q ss_pred             CCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccC
Q 040833          369 ENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEV  448 (503)
Q Consensus       369 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  448 (503)
                      +|+++...+.+|.++++|++|+|++|.+++..+++|..+++|++|+|++|.+..... ...-...++...+..+.+++..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~-~~~~~~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH-LAWFAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG-GHHHHHHHHHHCCSGGGCBBCS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc-hHHHhhhhhhhcccCCCeEeCC
Confidence            888887777778888888888888888887777778888888888888887753211 1111123556667777777665


Q ss_pred             CCCCccCCCCceeccCCCCCcc
Q 040833          449 PIKGVFSNSSAISIDGNDNLCG  470 (503)
Q Consensus       449 ~~~~~~~~l~~l~~~~n~~~c~  470 (503)
                      |  ..+..++.++++.|...|.
T Consensus       166 p--~~l~~~~l~~L~~n~l~C~  185 (192)
T d1w8aa_         166 P--SKVRDVQIKDLPHSEFKCS  185 (192)
T ss_dssp             S--TTTTTSBGGGSCTTTCCCC
T ss_pred             C--hhhcCCEeeecCHhhCcCC
Confidence            5  3456666677777776664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=3.3e-16  Score=135.52  Aligned_cols=164  Identities=26%  Similarity=0.310  Sum_probs=87.8

Q ss_pred             CCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEE
Q 040833          238 LVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLN  317 (503)
Q Consensus       238 ~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  317 (503)
                      +.+|++|+++++.++...  .+..+++|++|++++|.+++..  .++.+++|+.|++++|.+++. + .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc-c-cccccccccccc
Confidence            345666666666655321  3455566666666666555332  234555566666655555532 1 344555555555


Q ss_pred             CcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCc
Q 040833          318 LSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ  397 (503)
Q Consensus       318 l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  397 (503)
                      +++|.+.                         ..  ..+..++.++.+++++|.+++  +..+..+++|+++++++|.++
T Consensus       119 l~~~~~~-------------------------~~--~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~  169 (210)
T d1h6ta2         119 LEHNGIS-------------------------DI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS  169 (210)
T ss_dssp             CTTSCCC-------------------------CC--GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred             ccccccc-------------------------cc--ccccccccccccccccccccc--ccccccccccccccccccccc
Confidence            5555443                         11  224445556666666665542  123445566666666666665


Q ss_pred             ccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecC
Q 040833          398 GNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLS  440 (503)
Q Consensus       398 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  440 (503)
                      +. + .+.++++|++|++++|++++. + .+..+++|++|+++
T Consensus       170 ~i-~-~l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         170 DI-V-PLAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CC-G-GGTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEE
T ss_pred             cc-c-cccCCCCCCEEECCCCCCCCC-h-hhcCCCCCCEEEcc
Confidence            32 2 255666666666666666532 2 35666666666664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.3e-16  Score=138.15  Aligned_cols=146  Identities=25%  Similarity=0.366  Sum_probs=69.9

Q ss_pred             CCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEE
Q 040833           15 LSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYIC   94 (503)
Q Consensus        15 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~   94 (503)
                      +.+|++|++++|.++.. + .+..+++|++|++++|.+.+..  .++.+++|++|++++|+++. ++ .+.++++|++|+
T Consensus        45 L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccc
Confidence            44555555555555532 1 2455555555555555555322  24555555555555555542 22 355555555555


Q ss_pred             ccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccC
Q 040833           95 VPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHL  172 (503)
Q Consensus        95 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l  172 (503)
                      +++|.+. .++ .+. .++.++.+++++|.+++  +..+..+++|+.+++++|.+.+ .+.+..+++|++|++++|.+
T Consensus       119 l~~~~~~-~~~-~l~-~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         119 LEHNGIS-DIN-GLV-HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVPLAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             CTTSCCC-CCG-GGG-GCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGGGTTCTTCCEEECCSSCC
T ss_pred             ccccccc-ccc-ccc-ccccccccccccccccc--cccccccccccccccccccccc-cccccCCCCCCEEECCCCCC
Confidence            5555543 222 222 25555555555555441  2234445555555555554432 12244444444444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=3.1e-16  Score=134.49  Aligned_cols=147  Identities=28%  Similarity=0.366  Sum_probs=64.7

Q ss_pred             CCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEE
Q 040833           39 LSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVL  118 (503)
Q Consensus        39 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  118 (503)
                      +.++++|+++++.+...  +.++.+++|++|++++|+++...  .++++++|++|++++|.+. .++. +. .++.|+.|
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~-~~~~-l~-~l~~L~~L  111 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DITP-LA-NLTNLTGL  111 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG-GT-TCTTCSEE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCcccccccccccccc-cccc-cc-cccccccc
Confidence            34444444444444422  12444444444444444444211  1444444444444444443 2221 21 24445555


Q ss_pred             EccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECc
Q 040833          119 NLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQIS  198 (503)
Q Consensus       119 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~  198 (503)
                      +++++....  ...+..+++|+.+++++|.+.. .+.+..+++|++|++.+|.++.        ...+..+++|++|+++
T Consensus       112 ~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~--------l~~l~~l~~L~~L~ls  180 (199)
T d2omxa2         112 TLFNNQITD--IDPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLNFSSNQVTD--------LKPLANLTTLERLDIS  180 (199)
T ss_dssp             ECCSSCCCC--CGGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCCC--------CGGGTTCTTCCEEECC
T ss_pred             ccccccccc--ccccchhhhhHHhhhhhhhhcc-cccccccccccccccccccccC--------CccccCCCCCCEEECC
Confidence            554444431  1234444555555555544432 2234445555555555554432        1124445555556665


Q ss_pred             CCccc
Q 040833          199 DNNFG  203 (503)
Q Consensus       199 ~~~~~  203 (503)
                      +|+++
T Consensus       181 ~N~i~  185 (199)
T d2omxa2         181 SNKVS  185 (199)
T ss_dssp             SSCCC
T ss_pred             CCCCC
Confidence            55554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=4e-16  Score=133.81  Aligned_cols=161  Identities=27%  Similarity=0.370  Sum_probs=86.5

Q ss_pred             CCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccce
Q 040833          261 DLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIY  340 (503)
Q Consensus       261 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~  340 (503)
                      .++++++|++++|.+.+.  ..++.+++|++|++++|.+++..  .+..+++|++|++++|.+. ..+ .+..++.+ +.
T Consensus        38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L-~~  110 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DIT-PLANLTNL-TG  110 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCG-GGTTCTTC-SE
T ss_pred             HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCcccccccccccccc-ccc-cccccccc-cc
Confidence            455677777777776643  33566677777777777766433  2666677777777776655 222 24444444 55


Q ss_pred             eEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCcc
Q 040833          341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL  420 (503)
Q Consensus       341 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  420 (503)
                      ++++++.+...  ..+..+++|+.|++++|.+.. + ..+..+++|+.|++++|.+++.  ..++++++|++|++++|++
T Consensus       111 L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         111 LTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKV  184 (199)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCC
Confidence            55555555422  224445555555555555542 1 2344555555555555555432  1245555555555555555


Q ss_pred             ccccCccCcCCCCCCe
Q 040833          421 SGRIPKYLENFPFLQN  436 (503)
Q Consensus       421 ~~~~~~~~~~~~~L~~  436 (503)
                      ++.  ..+..+++|++
T Consensus       185 ~~i--~~l~~L~~L~~  198 (199)
T d2omxa2         185 SDI--SVLAKLTNLES  198 (199)
T ss_dssp             CCC--GGGGGCTTCSE
T ss_pred             CCC--ccccCCCCCCc
Confidence            432  12444454444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.7e-16  Score=144.19  Aligned_cols=222  Identities=18%  Similarity=0.211  Sum_probs=126.2

Q ss_pred             CEEECcCCcccccCchhHhhcc-ccCcEEEeeccccccccchhccCCCCCcEEEccCCccccc-CCccccCCCCCCEEEc
Q 040833          193 ELLQISDNNFGGMLPEAVGNLS-TRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGR-IPGSIVDLYKLQRLAL  270 (503)
Q Consensus       193 ~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~~~~L~~L~l  270 (503)
                      +++|++++.+.   |..+.++. .....+.+....+..... ......+|++||++++.+... +...+..+++|++|++
T Consensus         3 ~~lDLs~~~l~---~~~l~~l~~~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L   78 (284)
T d2astb2           3 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL   78 (284)
T ss_dssp             SEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             CEEECCCCCCC---chHHHHHHhccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccc
Confidence            46777766543   23332221 124455554444332211 223445788888887776532 2334567778888888


Q ss_pred             cCCcccccCCccccCCCCCCEEEccCCc-CcccC-CccccCCCCCCEEECcCCc-Cccc-CCcchhccccccceeEccCC
Q 040833          271 EGNKFWGEIPSSIGNLTLLITLNFEENM-LEGSI-PSSLGKCQNLISLNLSNNN-LSGT-IPTEVIGLSSLSIYLDLSQN  346 (503)
Q Consensus       271 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~-~~~~~~~~~L~~L~l~~n~-~~~~-~~~~~~~~~~l~~~L~l~~n  346 (503)
                      ++|.+.+..+..+..+++|++|++++|. +++.. ......+++|++|++++|. +++. ....+......++.|+++++
T Consensus        79 ~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2          79 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             cccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccc
Confidence            8887766556667777888888887753 43221 1223457788888888763 3321 11222222222266666654


Q ss_pred             --CCccC-CCcchhcCCCCCeEeCCCC-cccccCCccccCCCCCCEEECCCC-cCcccCchhccCCCCCCEEeCCCC
Q 040833          347 --QLNGP-LPSNFGILKNLGAIDISEN-KLSGQIPSSIGSCTRLEQLVMNGN-FFQGNIPSSLSSLRGIENLDLSRN  418 (503)
Q Consensus       347 --~l~~~-~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n  418 (503)
                        .+++. +...+..+++|++|++++| .+++.....+..+++|++|++++| .+++.....+.++++|++|++++|
T Consensus       159 ~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         159 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              23322 1122345677777777765 355555556666777777777775 455555555666777777777776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3e-16  Score=142.53  Aligned_cols=183  Identities=22%  Similarity=0.211  Sum_probs=84.3

Q ss_pred             CCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCc-CcccCCCccCCCCCcEE
Q 040833           87 LSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNG-FSGKVPSLKILHKLEWV  165 (503)
Q Consensus        87 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~l~~l~~L~~L  165 (503)
                      ..+|++|+++++.+.+.....++..+++|++|+++++.+++..+..+..+++|++|++++|. ++..             
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~-------------  111 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-------------  111 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-------------
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccccc-------------
Confidence            34555555555544433333344445555555555555554444445555555555555532 1110             


Q ss_pred             EcccccCCCCCCCCccccccccCCCCCCEEECcCCc-cccc-CchhHhhccccCcEEEeeccc--cccc-cchhccCCCC
Q 040833          166 GISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNN-FGGM-LPEAVGNLSTRLRILIVGNNQ--LFGN-IPSGLRNLVN  240 (503)
Q Consensus       166 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~~L~~L~l~~~~--~~~~-~~~~~~~~~~  240 (503)
                                     ........+++|++|++++|. +++. ....+...++.++.|.++++.  +.+. .......+++
T Consensus       112 ---------------~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~  176 (284)
T d2astb2         112 ---------------ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN  176 (284)
T ss_dssp             ---------------HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT
T ss_pred             ---------------ccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccc
Confidence                           000111223444444444432 2111 111222333345555555432  2211 1122344566


Q ss_pred             CcEEEccCC-cccccCCccccCCCCCCEEEccCC-cccccCCccccCCCCCCEEEccCC
Q 040833          241 LEFLHLGGN-QFTGRIPGSIVDLYKLQRLALEGN-KFWGEIPSSIGNLTLLITLNFEEN  297 (503)
Q Consensus       241 L~~L~ls~n-~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n  297 (503)
                      |++|++++| .+++.....+..+++|++|++++| .+++.....++.+++|+.|++.++
T Consensus       177 L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            666666654 344444445556666666666664 344333444556666677666665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.7e-15  Score=123.28  Aligned_cols=128  Identities=20%  Similarity=0.164  Sum_probs=90.8

Q ss_pred             ccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCC
Q 040833           11 KLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSL   90 (503)
Q Consensus        11 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L   90 (503)
                      .|.++.++|+|+|++|.|+. .+..+..+++|++|++++|.|...  +.|..+++|++|++++|+++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            45677788888888888884 456667788888888888888754  347788888888888888875555556678888


Q ss_pred             cEEEccCCCCcccCch-hhhcCCCCCCEEEccCCcccccCCc----cccCCCCCCEEe
Q 040833           91 NYICVPVNQLQGSLPS-DLGFTLPNLEVLNLCRNQFTGPIPA----SISNASNLMRLV  143 (503)
Q Consensus        91 ~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~  143 (503)
                      ++|++++|.+. .++. .....+++|++|++++|+++ ..+.    .+..+|+|+.|+
T Consensus        90 ~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             ccceecccccc-ccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            88888888776 4433 22334778888888888776 3332    355667777665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=1.4e-14  Score=112.96  Aligned_cols=105  Identities=25%  Similarity=0.289  Sum_probs=78.2

Q ss_pred             ceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCC
Q 040833          339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRN  418 (503)
Q Consensus       339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  418 (503)
                      +.|++++|+++.. + .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ ++ .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            3577788887733 3 3677888888888888887 556677788888888888888874 33 4778888888888888


Q ss_pred             cccccc-CccCcCCCCCCeeecCCCcCcccC
Q 040833          419 NLSGRI-PKYLENFPFLQNLNLSFNHFEGEV  448 (503)
Q Consensus       419 ~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~  448 (503)
                      ++++.. ...+..+++|+.|++++|++....
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            887543 245777888888888888887544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.4e-15  Score=122.67  Aligned_cols=65  Identities=18%  Similarity=0.238  Sum_probs=27.7

Q ss_pred             hcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccC-chhccCCCCCCEEeCCCCccc
Q 040833          357 GILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI-PSSLSSLRGIENLDLSRNNLS  421 (503)
Q Consensus       357 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~  421 (503)
                      ..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.. ...+..+++|++|++++|+++
T Consensus        60 ~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          60 PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccc
Confidence            33444444444444444333333334444444444444444211 123344444444444444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.55  E-value=1e-15  Score=143.61  Aligned_cols=108  Identities=20%  Similarity=0.299  Sum_probs=68.8

Q ss_pred             ceeEccCCCCccC-----CCcchhcCCCCCeEeCCCCccccc----CCccccCCCCCCEEECCCCcCcccCch----hcc
Q 040833          339 IYLDLSQNQLNGP-----LPSNFGILKNLGAIDISENKLSGQ----IPSSIGSCTRLEQLVMNGNFFQGNIPS----SLS  405 (503)
Q Consensus       339 ~~L~l~~n~l~~~-----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~----~~~  405 (503)
                      +.+++++|.+...     ....+..+++|++|++++|.++..    +...+..+++|++|++++|.+++....    .+.
T Consensus       189 ~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~  268 (344)
T d2ca6a1         189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS  268 (344)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             cccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhh
Confidence            4455555544321     122345667788888888877642    334566778888888888888754322    232


Q ss_pred             C--CCCCCEEeCCCCcccccc----CccC-cCCCCCCeeecCCCcCcc
Q 040833          406 S--LRGIENLDLSRNNLSGRI----PKYL-ENFPFLQNLNLSFNHFEG  446 (503)
Q Consensus       406 ~--l~~L~~L~L~~n~l~~~~----~~~~-~~~~~L~~L~l~~n~l~~  446 (503)
                      .  .+.|++|++++|+++...    ...+ .+.+.|++|++++|++..
T Consensus       269 ~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         269 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            2  367888888888886432    2223 256788888888888864

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.55  E-value=1.3e-15  Score=142.72  Aligned_cols=43  Identities=14%  Similarity=0.166  Sum_probs=20.5

Q ss_pred             cccccCCCCCCEEECcCCcccccCchhHhhc---cccCcEEEeecc
Q 040833          183 VNSLVNASRLELLQISDNNFGGMLPEAVGNL---STRLRILIVGNN  225 (503)
Q Consensus       183 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~L~~L~l~~~  225 (503)
                      ...+.....+++|++++|.+.......++..   .+.++.+.++++
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~   69 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI   69 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCC
Confidence            3344555666666666665543322222211   124555555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=4.9e-14  Score=109.82  Aligned_cols=118  Identities=21%  Similarity=0.266  Sum_probs=87.7

Q ss_pred             cEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEccCC
Q 040833           19 RILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVN   98 (503)
Q Consensus        19 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n   98 (503)
                      |+|++++|.++ ..+ .+..+++|++|++++|.++ .+|..|..+++|++|++++|.++. ++ .+.++++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            67899999998 444 4888899999999999988 557778889999999999998883 43 5888899999999998


Q ss_pred             CCcccCch-hhhcCCCCCCEEEccCCcccccC---CccccCCCCCCEE
Q 040833           99 QLQGSLPS-DLGFTLPNLEVLNLCRNQFTGPI---PASISNASNLMRL  142 (503)
Q Consensus        99 ~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~~~L~~L  142 (503)
                      ++. .++. ..+..+++|++|++++|+++...   ......+|+|+.+
T Consensus        76 ~i~-~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCC-SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccC-CCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            887 4442 22334888888888888886321   1223345666654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.7e-13  Score=111.53  Aligned_cols=109  Identities=18%  Similarity=0.100  Sum_probs=79.6

Q ss_pred             ceeEccCCCCccCCCcchhcCCCCCeEeCCCC-cccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCC
Q 040833          339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISEN-KLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSR  417 (503)
Q Consensus       339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  417 (503)
                      +.++.+++.+. ..+..+..+++|++|+++++ .++...+..|.++++|+.|++++|+++.+.+.+|.++++|++|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            45777777776 44566777778888888655 47766666778888888888888888877777788888888888888


Q ss_pred             CccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833          418 NNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP  449 (503)
Q Consensus       418 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  449 (503)
                      |+++...+..|... +|++|+|++|++.+.+.
T Consensus        90 N~l~~l~~~~~~~~-~l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3          90 NALESLSWKTVQGL-SLQELVLSGNPLHCSCA  120 (156)
T ss_dssp             SCCSCCCSTTTCSC-CCCEEECCSSCCCCCGG
T ss_pred             CCCcccChhhhccc-cccccccCCCcccCCch
Confidence            88875555555544 58888888888876554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.5e-13  Score=109.00  Aligned_cols=111  Identities=19%  Similarity=0.197  Sum_probs=85.1

Q ss_pred             CCCCeEeCCCCcccccCCccccCCCCCCEEECCCC-cCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeee
Q 040833          360 KNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGN-FFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLN  438 (503)
Q Consensus       360 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  438 (503)
                      ...+.++.+++.+. ..|..+..+++|++|++++| .++...+.+|.++++|+.|+|++|+|+.+.+..|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34556777777776 55667777888888888766 47766677788888888888888888877788888888888888


Q ss_pred             cCCCcCcccCCCCCccCCCCceeccCCCCCccc
Q 040833          439 LSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGG  471 (503)
Q Consensus       439 l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~  471 (503)
                      |++|+++...+..-....++.+++++||+.|+|
T Consensus        87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C  119 (156)
T d2ifga3          87 LSFNALESLSWKTVQGLSLQELVLSGNPLHCSC  119 (156)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred             ccCCCCcccChhhhccccccccccCCCcccCCc
Confidence            888888865554333446788888888888866

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=4.6e-14  Score=120.07  Aligned_cols=108  Identities=26%  Similarity=0.294  Sum_probs=47.4

Q ss_pred             cCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCC
Q 040833          308 GKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLE  387 (503)
Q Consensus       308 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  387 (503)
                      ..+++|++|++++|.+. .++ .+..++++ +.|++++|.++ .++..+..+++|++|++++|.++..  ..+..+++|+
T Consensus        45 ~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L-~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~  118 (198)
T d1m9la_          45 STLKACKHLALSTNNIE-KIS-SLSGMENL-RILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLR  118 (198)
T ss_dssp             HHTTTCCEEECSEEEES-CCC-CHHHHTTC-CEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSS
T ss_pred             hcccccceeECcccCCC-Ccc-cccCCccc-cChhhcccccc-ccccccccccccccccccccccccc--cccccccccc
Confidence            33444444444444443 121 23333333 44444444443 2222223334455555555555422  2244455555


Q ss_pred             EEECCCCcCcccC-chhccCCCCCCEEeCCCCccc
Q 040833          388 QLVMNGNFFQGNI-PSSLSSLRGIENLDLSRNNLS  421 (503)
Q Consensus       388 ~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~  421 (503)
                      .|++++|.+++.. ...+..+++|++|++++|++.
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccchhccccccccccCCCccceeecCCCccc
Confidence            5555555554221 134455555555555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.29  E-value=2.6e-14  Score=121.65  Aligned_cols=147  Identities=21%  Similarity=0.241  Sum_probs=109.0

Q ss_pred             CCCCCcEEEcccC--cCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCc
Q 040833           14 SLSKLRILAMHRN--NLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLN   91 (503)
Q Consensus        14 ~~~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~   91 (503)
                      .....+.+++++.  .++ ..+.++..+++|++|++++|.|..+ + .+..+++|++|++++|.+. .++..+..++.|+
T Consensus        21 ~~~~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~   96 (198)
T d1m9la_          21 VATEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE   96 (198)
T ss_dssp             CCTTCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCC
T ss_pred             cccccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-ccccccccccccc
Confidence            3344566777664  344 5567788899999999999998854 3 5888899999999999987 5555555567899


Q ss_pred             EEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccC-CccccCCCCCCEEecccCcCcccCCC-----------ccCC
Q 040833           92 YICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPI-PASISNASNLMRLVIAKNGFSGKVPS-----------LKIL  159 (503)
Q Consensus        92 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~-----------l~~l  159 (503)
                      +|++++|.+. .++ .+.. +++|++|++++|.++... ...+..+++|++|++++|.+....+.           +..+
T Consensus        97 ~L~l~~N~i~-~l~-~~~~-l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~l  173 (198)
T d1m9la_          97 ELWISYNQIA-SLS-GIEK-LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL  173 (198)
T ss_dssp             EEECSEEECC-CHH-HHHH-HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHC
T ss_pred             cccccccccc-ccc-cccc-cccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHC
Confidence            9999999887 443 3443 889999999999887432 14678899999999999987654332           4568


Q ss_pred             CCCcEEEc
Q 040833          160 HKLEWVGI  167 (503)
Q Consensus       160 ~~L~~L~l  167 (503)
                      ++|+.||-
T Consensus       174 p~L~~LD~  181 (198)
T d1m9la_         174 PNLKKLDG  181 (198)
T ss_dssp             SSCCEESS
T ss_pred             CCcCEeCC
Confidence            88998863

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=4e-09  Score=85.79  Aligned_cols=64  Identities=23%  Similarity=0.224  Sum_probs=28.6

Q ss_pred             cCCCCCeEeCCCCcccccC--CccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccc
Q 040833          358 ILKNLGAIDISENKLSGQI--PSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS  421 (503)
Q Consensus       358 ~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  421 (503)
                      .++.|++|++++|+++...  +..+..+++|+.|++++|.+.+.....+.+..+|+.|++++|++.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3445555555555554321  123344455555555555554322222223334555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=3.7e-08  Score=79.87  Aligned_cols=82  Identities=23%  Similarity=0.253  Sum_probs=53.9

Q ss_pred             hccccccceeEccCCCCccCC--CcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCc-------h
Q 040833          332 IGLSSLSIYLDLSQNQLNGPL--PSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIP-------S  402 (503)
Q Consensus       332 ~~~~~l~~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-------~  402 (503)
                      ..++.+ ++|++++|.|++..  +..+..+++|+.|++++|.+++..+-.+.....|++|++++|++.....       .
T Consensus        62 ~~~~~L-~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPEL-LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTC-CCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCC-CEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            345555 67777777776432  3446678888888888888875433333445578888888888875433       2


Q ss_pred             hccCCCCCCEEe
Q 040833          403 SLSSLRGIENLD  414 (503)
Q Consensus       403 ~~~~l~~L~~L~  414 (503)
                      .+..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            355677787775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.03  E-value=2e-06  Score=69.69  Aligned_cols=37  Identities=11%  Similarity=0.128  Sum_probs=17.1

Q ss_pred             CCCCCeEeCCCCccccc----CCccccCCCCCCEEECCCCc
Q 040833          359 LKNLGAIDISENKLSGQ----IPSSIGSCTRLEQLVMNGNF  395 (503)
Q Consensus       359 ~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~  395 (503)
                      .+.|++|++++|.+++.    +..++...++|++|++++|.
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            34455555555555431    12233444555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.94  E-value=1.6e-06  Score=70.38  Aligned_cols=88  Identities=16%  Similarity=0.172  Sum_probs=55.7

Q ss_pred             hhcCCCCCeEeCCCCccccc----CCccccCCCCCCEEECCCCcCcccC----chhccCCCCCCEEeCCCCccccc----
Q 040833          356 FGILKNLGAIDISENKLSGQ----IPSSIGSCTRLEQLVMNGNFFQGNI----PSSLSSLRGIENLDLSRNNLSGR----  423 (503)
Q Consensus       356 ~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----  423 (503)
                      +...+.|++|++++|.+++.    +...+...+.|++|++++|.+++..    ..++...++|++|++++|.+...    
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            34456677777777777642    2234455677888888888777432    23456667788888887754422    


Q ss_pred             ---cCccCcCCCCCCeeecCCCc
Q 040833          424 ---IPKYLENFPFLQNLNLSFNH  443 (503)
Q Consensus       424 ---~~~~~~~~~~L~~L~l~~n~  443 (503)
                         +...+...++|+.|+++.+.
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHhCCCccEeeCcCCC
Confidence               23344556778888776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.43  E-value=9e-06  Score=65.71  Aligned_cols=13  Identities=31%  Similarity=0.406  Sum_probs=8.3

Q ss_pred             cCCCCCCEEECcC
Q 040833          308 GKCQNLISLNLSN  320 (503)
Q Consensus       308 ~~~~~L~~L~l~~  320 (503)
                      ...++|++|++++
T Consensus        14 ~~~~~L~~L~L~~   26 (166)
T d1io0a_          14 NNDPDLEEVNLNN   26 (166)
T ss_dssp             TTCTTCCEEECTT
T ss_pred             hcCCCCcEEEcCC
Confidence            3456677777765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.41  E-value=3.2e-05  Score=62.33  Aligned_cols=41  Identities=10%  Similarity=0.052  Sum_probs=26.1

Q ss_pred             cCCCCCCEEEccCC-cCccc----CCccccCCCCCCEEECcCCcCc
Q 040833          284 GNLTLLITLNFEEN-MLEGS----IPSSLGKCQNLISLNLSNNNLS  324 (503)
Q Consensus       284 ~~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~l~~n~~~  324 (503)
                      ...+.|++|+++++ .++..    +..++...++|++|++++|.+.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            45677888888763 45422    2334556777777777777765