Citrus Sinensis ID: 040877
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 281 | ||||||
| 224053603 | 350 | predicted protein [Populus trichocarpa] | 0.918 | 0.737 | 0.435 | 1e-52 | |
| 255543266 | 230 | conserved hypothetical protein [Ricinus | 0.782 | 0.956 | 0.446 | 2e-48 | |
| 225425314 | 292 | PREDICTED: uncharacterized protein LOC10 | 0.839 | 0.808 | 0.445 | 2e-46 | |
| 224075423 | 322 | predicted protein [Populus trichocarpa] | 0.903 | 0.788 | 0.408 | 5e-46 | |
| 118485775 | 311 | unknown [Populus trichocarpa] | 0.637 | 0.575 | 0.452 | 2e-33 | |
| 224136011 | 318 | predicted protein [Populus trichocarpa] | 0.637 | 0.562 | 0.447 | 2e-33 | |
| 255543473 | 1198 | pentatricopeptide repeat-containing prot | 0.647 | 0.151 | 0.464 | 6e-33 | |
| 224161082 | 311 | predicted protein [Populus trichocarpa] | 0.637 | 0.575 | 0.426 | 6e-33 | |
| 147821287 | 272 | hypothetical protein VITISV_021493 [Viti | 0.572 | 0.591 | 0.449 | 8e-33 | |
| 224097530 | 429 | predicted protein [Populus trichocarpa] | 0.619 | 0.405 | 0.459 | 1e-32 |
| >gi|224053603|ref|XP_002297893.1| predicted protein [Populus trichocarpa] gi|222845151|gb|EEE82698.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 132/303 (43%), Positives = 168/303 (55%), Gaps = 45/303 (14%)
Query: 1 MEWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQ----------------- 43
ME +LELKV SC DLKAFN F +LSVY VVS+ N E +K EQ
Sbjct: 27 MEGVSLELKVISCRDLKAFNFFQKLSVYVVVSVFNDEPRKNEQQRQKTAVDFLSCVLKKN 86
Query: 44 ----------------------RQTCLQRQKTPTDREGGGNPEWNHMMKFDIK--AFVDN 79
+Q LQRQKTP DREGG NPEWNHMM+FD+ + +
Sbjct: 87 EKQRQRLQGQKTPLNDEAQKNEQQQLLQRQKTPADREGGSNPEWNHMMEFDLNTTSLPGH 146
Query: 80 CNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSF 139
+HLF F+L EG I+G +SIG+V VP KDLI+EFNG+VRFV YQ+R GKPNGVL+
Sbjct: 147 GDHLFFKFELRCEGAIFGNKSIGEVCVPFKDLIEEFNGSVRFVSYQVRNSDGKPNGVLNL 206
Query: 140 CYKLKGMTIKKGEIPSPEVCLSPGIH-SSKEKVNYPCIEVDDLSSPGICYPPLDYVYSPL 198
Y++ K+G I SP+V L PGI SS +KV YP +EVD S YP LD +
Sbjct: 207 SYEVNEKVQKEG-IESPKVDLPPGIRFSSPKKVRYPSVEVDVKSRNACLYPSLDDISFSS 265
Query: 199 PGFYSPPPNYQYEATRGYGTTLPPLS-PVQV-SSLMVASGSHYHPCPSPYVKSPWPWQHV 256
P S P+ + T+PP + P+Q+ S+ V G H H PSP +SP +++
Sbjct: 266 PSPGSGLPSMELSHPVKVRYTMPPPTFPLQLPPSVAVDHGVHQHQFPSPLTQSPGSYRYT 325
Query: 257 QST 259
T
Sbjct: 326 TKT 328
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543266|ref|XP_002512696.1| conserved hypothetical protein [Ricinus communis] gi|223548657|gb|EEF50148.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 117/262 (44%), Positives = 152/262 (58%), Gaps = 42/262 (16%)
Query: 1 MEWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGG 60
MEWS+LELK+ SC DL+AFNLF +LSVY+VVS N ELKKK+ RQKTP D +GG
Sbjct: 1 MEWSSLELKLISCRDLRAFNLFQKLSVYAVVSSFNDELKKKDAED----RQKTPVDTQGG 56
Query: 61 GNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVR 120
+PEWNH M FD++ V +HLF+ F L GVI+G R+IG+V VP KDLIDE++G VR
Sbjct: 57 RHPEWNHSMHFDLEP-VSLADHLFLKFKLRCAGVIFGKRTIGEVRVPFKDLIDEYSGTVR 115
Query: 121 FVRYQIRTGHGKPNGVLSFCYKLKGMTIKKGEIPSPEVCLSPGIHSSKEKVNYPCIEVDD 180
F+ YQ+R+G GKP+GVL+F Y+LKG + +K + P EKV E DD
Sbjct: 116 FMSYQVRSGDGKPSGVLNFSYRLKGKSKEKEDD-------CPCATGESEKVKE---EADD 165
Query: 181 LSSPGICYPPLDYVYSPLPGFYSPPPNYQYEATRGYGTTLPPLSPVQVSSLMVASGSHYH 240
+ YP L+ ++SPLP Y PVQ S L +A H H
Sbjct: 166 VQPQPRLYPSLEDIHSPLPSHY----------------------PVQESPLGLAV-DHRH 202
Query: 241 PCPSPYVKSPWPWQHVQSTGYA 262
P P+ Y + W ++ GY
Sbjct: 203 PSPATY----YCWYTSETAGYG 220
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425314|ref|XP_002268514.1| PREDICTED: uncharacterized protein LOC100245456 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 156/256 (60%), Gaps = 20/256 (7%)
Query: 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQT--CLQRQKTPTDREGGGN 62
++ELKV SC LKAFN F +L VY+VVSII+ E K Q+ CLQRQKTP DR+G GN
Sbjct: 6 SMELKVISCKHLKAFNFFQKLVVYAVVSIISDESKNSNQKHQIQCLQRQKTPVDRDGNGN 65
Query: 63 PEWNHMMKFDIK--AFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVR 120
PEWNH ++FD++ + D+ N+ ++ F L EG+++G ++IG+V VPLK+LIDEFN AVR
Sbjct: 66 PEWNHQLQFDLRDISLADSANY-YVKFSLRCEGIVFGNKTIGEVCVPLKELIDEFNRAVR 124
Query: 121 FVRYQIRTGHGKPNGVLSFCYKLKGMTIKKGEIPSPEVCLSPGIHSSKEKVNYPCIEVDD 180
FV YQ+RT GKPNGVL+F YKL IK ++P+ E E + YP +EV++
Sbjct: 125 FVSYQVRTTDGKPNGVLNFSYKL---NIKGSDLPAVEA-------PEDEHLPYPSVEVEE 174
Query: 181 LSSP--GICYPPLDYVYSPLPGFYSPPPNYQYE-ATRGYGTTLPPLSPVQVSSLMVASGS 237
+P CYP +D S LP P + E G P P + M+ +G+
Sbjct: 175 FHAPKKDSCYPSVD--VSTLPAISISTPYHTPEFHNMGPPQLPLPPPPPPAAVPMMMAGA 232
Query: 238 HYHPCPSPYVKSPWPW 253
+YHP P P V + P+
Sbjct: 233 YYHPLPCPLVYASQPY 248
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224075423|ref|XP_002304627.1| predicted protein [Populus trichocarpa] gi|222842059|gb|EEE79606.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 125/306 (40%), Positives = 159/306 (51%), Gaps = 52/306 (16%)
Query: 1 MEWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQR---------------- 44
ME +LELK SC DLK FN F +LSV+ VSI E KK EQR
Sbjct: 1 MEGISLELKEISCRDLKTFNFFQKLSVFVAVSIFIDEPKKNEQRRKKTAVDFLYGVLKRN 60
Query: 45 --------------------------QTCLQRQKTPTDREGGGNPEWNHMMKFDIK--AF 76
Q LQRQKTP DREGG NP+WNHMM+F++ +
Sbjct: 61 EKQQQRLKRQKTPPNTFNDEEKKNEQQQLLQRQKTPVDREGGSNPKWNHMMQFNLNTTSL 120
Query: 77 VDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGV 136
D +HLF F+L +G I+G ++IG+V VP KDL +EFNG+VRFV YQ+R G+PNGV
Sbjct: 121 PDYGDHLFFKFELRCKGSIFGNKTIGEVCVPFKDLNEEFNGSVRFVSYQVRNSDGRPNGV 180
Query: 137 LSFCYKLKGMTIKKGEIPSPEVCLSPGIH-SSKEKVNYPCIEVDDLSSPGICYPPLDYV- 194
L+F Y++ G +K+ E+ V L PGI SS +KV+YP +EVD S YP LD +
Sbjct: 181 LNFSYEVNG-KVKRNEVDGARVDLPPGIRFSSPKKVHYPSLEVDVKSRKACLYPSLDDIS 239
Query: 195 -YSPLPGFYSPPPNYQYEATRGYGTTLPPLSPVQVSSLMVASGSHYHPCPSPYVKSPWPW 253
SP PG P Y Y T PP P+Q L V + PSP +SP +
Sbjct: 240 FSSPSPGTGFPSTELCYPVKACY-TMPPPAFPLQ---LPVGHRVYQLQYPSPLTQSPGSY 295
Query: 254 QHVQST 259
+ T
Sbjct: 296 CYTTKT 301
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118485775|gb|ABK94736.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/190 (45%), Positives = 119/190 (62%), Gaps = 11/190 (5%)
Query: 1 MEWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIIN---GELKKKEQRQTCLQRQKTPTDR 57
M+ ++ELKV C D+ +FN F +L VY +VSI+ G K+Q + Q+Q+TPTD
Sbjct: 1 MDSGSMELKVMYCKDVNSFNFFKKLLVYVLVSIVRDDGGGDTDKKQLELQKQQQRTPTDT 60
Query: 58 EGGGNPEWNHMMKFDI-KAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFN 116
EG GNPEWNH M FD+ + +C+H FI FDL EG+ +G ++IGKV VPLKDLI E N
Sbjct: 61 EGDGNPEWNHQMHFDLTEVSFQDCDHFFIHFDLCHEGLYFGDKTIGKVRVPLKDLIQEAN 120
Query: 117 GAVRFVRYQIRTGHGKPNGVLSFCYKLKGM---TIKKGEIPSPEVCLSP----GIHSSKE 169
G VRF+ Y++RT GKPNGVL F K+K M + + G P V P + S E
Sbjct: 121 GIVRFLSYEVRTPDGKPNGVLKFSCKVKNMGTNSSQAGITGYPIVNNQPYPTSEVQSLSE 180
Query: 170 KVNYPCIEVD 179
+ +YP ++++
Sbjct: 181 QAHYPTLDLE 190
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224136011|ref|XP_002327359.1| predicted protein [Populus trichocarpa] gi|222835729|gb|EEE74164.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/190 (44%), Positives = 119/190 (62%), Gaps = 11/190 (5%)
Query: 1 MEWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIIN---GELKKKEQRQTCLQRQKTPTDR 57
M+ ++ELKV C D+ +FN F +L VY +VSI+ G K+Q + Q+Q+TPTD
Sbjct: 1 MDSGSMELKVMYCKDVNSFNFFKKLLVYVLVSIVRDDGGGDTDKKQLELQKQQQRTPTDT 60
Query: 58 EGGGNPEWNHMMKFDIKAF-VDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFN 116
EG GNPEWNH M FD+ +C+H FI FDL EG+ +G ++IGKV VPLKDLI+E N
Sbjct: 61 EGDGNPEWNHQMHFDLAGVSFQDCDHFFIHFDLCHEGLYFGDKTIGKVRVPLKDLIEEAN 120
Query: 117 GAVRFVRYQIRTGHGKPNGVLSFCYKLKGM---TIKKGEIPSPEVCLSP----GIHSSKE 169
G VRF+ Y++RT GKPNGVL F ++K M + + G P V P + S E
Sbjct: 121 GIVRFLSYEVRTPDGKPNGVLKFSCQVKNMGTNSSQAGITGYPIVNNQPYPTSEVQSLSE 180
Query: 170 KVNYPCIEVD 179
+ +YP ++++
Sbjct: 181 QAHYPTLDLE 190
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543473|ref|XP_002512799.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223547810|gb|EEF49302.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/196 (46%), Positives = 123/196 (62%), Gaps = 14/196 (7%)
Query: 1 MEWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGG 60
ME +ELKV C+DLKAFN F +L VY +VS+++ + KK +R Q+Q+TPTD E
Sbjct: 891 MESKFMELKVMYCNDLKAFNFFQKLLVYVLVSLVSEDPDKKLKRN---QQQRTPTDTEDD 947
Query: 61 GNPEWNHMMKFDIK--AFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGA 118
GNP WNH M+FD+ +FVD C+HLF+ FDL EG+ +G ++IG V VPLKDLI E +G
Sbjct: 948 GNPAWNHEMRFDLSEVSFVD-CDHLFLHFDLLHEGLYFGNKTIGDVRVPLKDLIQESSGI 1006
Query: 119 VRFVRYQIRTGHGKPNGVLSFCYKLKGMTIKKG-EIPSPEVC-LSPGIHSSKEK--VNYP 174
RFV YQ+R+ GKPNG+L+F YK+ G P+ E+ S +H E + P
Sbjct: 1007 TRFVNYQVRSPEGKPNGILNFSYKVNAQGKDMGIHFPTSEITGYSVVVHHHHESSDIQNP 1066
Query: 175 CIEVDDLSSPGICYPP 190
+ SSP + YPP
Sbjct: 1067 A----ESSSPVVHYPP 1078
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224161082|ref|XP_002338292.1| predicted protein [Populus trichocarpa] gi|222871748|gb|EEF08879.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 117/190 (61%), Gaps = 11/190 (5%)
Query: 1 MEWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQ---KTPTDR 57
M+ ++ELKV C D+ +FN F +L VY +VSI+ + ++ ++ +TPTD
Sbjct: 1 MDSGSMELKVMYCKDVNSFNFFKKLLVYVLVSIVKDDGGDDSDKKQLELQKQQQRTPTDT 60
Query: 58 EGGGNPEWNHMMKFDI-KAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFN 116
EG GNPEWNH M FD+ + +C+H FI FDL EG+ +G ++IGKV VPLKDLI+E N
Sbjct: 61 EGDGNPEWNHQMHFDLAEVSFQDCDHFFIHFDLCHEGLYFGDKTIGKVRVPLKDLIEEAN 120
Query: 117 GAVRFVRYQIRTGHGKPNGVLSFCYKLKGM---TIKKGEIPSPEVCLSP----GIHSSKE 169
G VRF+ Y++RT GKPNGVL F K+K M + + G P V P + S E
Sbjct: 121 GIVRFLSYEVRTPDGKPNGVLKFSCKVKNMGTNSSQAGITGYPIVNNQPYPTSEVQSLSE 180
Query: 170 KVNYPCIEVD 179
+ +YP ++++
Sbjct: 181 QAHYPTLDLE 190
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147821287|emb|CAN74598.1| hypothetical protein VITISV_021493 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 114/178 (64%), Gaps = 17/178 (9%)
Query: 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQT--CLQRQKTPTDREGGGN 62
++ELKV SC LKAFN F +L VY+VVSII+ E K Q+ CLQRQKTP DR+G GN
Sbjct: 6 SMELKVISCKHLKAFNFFQKLVVYAVVSIISDESKNSNQKHQIQCLQRQKTPVDRDGNGN 65
Query: 63 PEWNHMMKFDIK--AFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVR 120
PEWNH ++FD++ + D+ N+ ++ F L EG+++G ++IG+V VPLK+LIDEFN AVR
Sbjct: 66 PEWNHQLQFDLRDISLADSANY-YVKFSLRCEGIVFGNKTIGEVCVPLKELIDEFNRAVR 124
Query: 121 FVRYQ----IRTGHGKPNGVLSFCYKLKGM--------TIKKGEIPSPEVCLSPGIHS 166
FV YQ + H + N L+ +KL+ T++ +P P + +S H+
Sbjct: 125 FVSYQEVIYQQLRHQRMNIFLTPQWKLRSFMLLKRIVATLQWMFLPCPAISISTPYHT 182
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097530|ref|XP_002334605.1| predicted protein [Populus trichocarpa] gi|222873456|gb|EEF10587.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 116/185 (62%), Gaps = 11/185 (5%)
Query: 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIIN---GELKKKEQRQTCLQRQKTPTDREGGGN 62
+ELKV C D+ +FN F +L VY +VSI+ G K+Q + Q+Q+TPTD EG GN
Sbjct: 1 MELKVMYCKDVNSFNFFKKLLVYVLVSIVRDDGGGDTDKKQLELQKQQQRTPTDTEGDGN 60
Query: 63 PEWNHMMKFDI-KAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRF 121
PEWNH M FD+ + +C+H FI FDL EG+ +G ++IGKV VPLKDLI E NG VRF
Sbjct: 61 PEWNHQMHFDLTEVSFQDCDHFFIHFDLCHEGLYFGDKTIGKVRVPLKDLIQEANGIVRF 120
Query: 122 VRYQIRTGHGKPNGVLSFCYKLKGM---TIKKGEIPSPEVCLSP----GIHSSKEKVNYP 174
+ Y++RT GKPNGVL F K+K M + + G P V P + S E+ +YP
Sbjct: 121 LSYEVRTPDGKPNGVLKFSCKVKNMGTNSSQAGITGYPIVNNQPYPTSEVQSLSEQAHYP 180
Query: 175 CIEVD 179
++++
Sbjct: 181 TLDLE 185
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 281 | ||||||
| TAIR|locus:2088334 | 360 | AT3G16510 "AT3G16510" [Arabido | 0.846 | 0.661 | 0.332 | 1.6e-22 | |
| TAIR|locus:504955431 | 289 | AT4G15755 "AT4G15755" [Arabido | 0.469 | 0.456 | 0.355 | 2.8e-18 | |
| TAIR|locus:2036004 | 324 | SRC2 "AT1G09070" [Arabidopsis | 0.725 | 0.629 | 0.295 | 3.6e-17 | |
| TAIR|locus:2081745 | 298 | AT3G62780 "AT3G62780" [Arabido | 0.772 | 0.728 | 0.284 | 9.4e-10 | |
| TAIR|locus:2137430 | 437 | AT4G08380 "AT4G08380" [Arabido | 0.384 | 0.247 | 0.370 | 0.00065 |
| TAIR|locus:2088334 AT3G16510 "AT3G16510" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 91/274 (33%), Positives = 123/274 (44%)
Query: 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPE 64
TLEL V S DL+ NL ++ VY+VV I + +K ++KTP DR G P
Sbjct: 5 TLELNVYSAKDLENVNLITKMDVYAVVWITGDDSRKNH-------KEKTPIDRTGESEPT 57
Query: 65 WNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLID---------EF 115
WNH +KF + + + L + L + I+G + +G+V VP+ +L+ +
Sbjct: 58 WNHTVKFSVDQRLAHEGRLTLVVKLVCDR-IFGDKDLGEVQVPVLELLHGSSSPSSNGDG 116
Query: 116 NGAVRFVRYQIRTGHGKPNGVLSFCYKLKGMTIKKGEIPSPEVC-LSPGIHSSKEKVNYP 174
G +RFV YQ+RT GK G L+F Y+ T K + S V P + SS N
Sbjct: 117 QGMMRFVTYQVRTPFGKGQGSLTFSYRFDSPTFKPDQPVSSHVFHQDPPVSSSHVYTNPM 176
Query: 175 CIEVD----------DLSSPGICYPPLDYV-YSPL--PGFYSPPPNYQYEATRGYGTTLP 221
I D SS YPPL + Y P P YS PP Y Y Y + P
Sbjct: 177 DIPSDFSSATTNYPPPQSSEANFYPPLSSIGYPPSSPPQHYSSPP-YPYPNPYQYHSHYP 235
Query: 222 PLSPVQVSSLMVASGSHYHPCPSPYVKSPWPWQH 255
PV V S S+ +P P Y SP P QH
Sbjct: 236 E-QPVAVYPPPPPSASNLYP-PPYYSTSP-P-QH 265
|
|
| TAIR|locus:504955431 AT4G15755 "AT4G15755" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 53/149 (35%), Positives = 83/149 (55%)
Query: 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPE 64
TLEL +NS +L NL +++V++ ++I NGE +K+Q+ KT DR GG NP
Sbjct: 5 TLELNINSARNLLNVNLITKMNVFTAITI-NGENTRKKQKA------KTTVDRYGGSNPT 57
Query: 65 WNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLID----EFNG--- 117
WN +KF + H + + S V+ G + IG+V++PL +L++ FNG
Sbjct: 58 WNQTIKFSVDERSARGGHSSLVMRVISRRVL-GNKEIGRVNIPLLELLNATTPSFNGDGN 116
Query: 118 --AVRFVRYQIRTGHGKPNGVLSFCYKLK 144
++ + YQ+RT GK +G LSF Y+ K
Sbjct: 117 DHEMKLMSYQVRTSSGKRSGSLSFSYRFK 145
|
|
| TAIR|locus:2036004 SRC2 "AT1G09070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 3.6e-17, P = 3.6e-17
Identities = 67/227 (29%), Positives = 102/227 (44%)
Query: 1 MEWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGG 60
ME +L+L + S DLK L + +Y+VVSI NG+ + K QKT D++ G
Sbjct: 1 MECRSLDLTIISAEDLKDVQLIGKQDLYAVVSI-NGDARTK---------QKTKVDKDCG 50
Query: 61 GNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNG-AV 119
P+W H MK + N L + F++ ++ I G + +G+V VP+K+L+D+ G
Sbjct: 51 TKPKWKHQMKLTVDDAAARDNRLTLVFEIVADRPIAGDKPVGEVSVPVKELLDQNKGDEE 110
Query: 120 RFVRYQIRTGHGKPNGVLSFCYKLKGMTIKKGEIPSPEVCLSPGI-HSSKEK--VNYP-- 174
+ V Y +R +GK G L F +K G G P + + H + ++ YP
Sbjct: 111 KTVTYAVRLPNGKAKGSLKFSFKF-GEKYTYGSSSGPHAPVPSAMDHKTMDQPVTAYPPG 169
Query: 175 ----CIEVDDLSSPGICYPPLDYVYSPLPGFYSPPPNYQYEA-TRGY 216
+ P YPP + G Y P Y A T GY
Sbjct: 170 HGAPSAYPAPPAGPSSGYPPQGHD-DKHDGVYGYPQQAGYPAGTGGY 215
|
|
| TAIR|locus:2081745 AT3G62780 "AT3G62780" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 161 (61.7 bits), Expect = 9.4e-10, P = 9.4e-10
Identities = 71/250 (28%), Positives = 111/250 (44%)
Query: 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPE 64
+LE+ V S LK + ++ V+ V + +G+ K + R+ Q+T R+GG +P+
Sbjct: 5 SLEINVTSAKGLKKVS---KMDVFVAVKL-SGDPKCSDHRE-----QRTQAARDGGTSPK 55
Query: 65 W-NHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNG---AVR 120
W N +MKF + + N L I F + E + IG+VHV +K+L+D R
Sbjct: 56 WSNDVMKFILDQNLAEANRLVITFKIKCEQRGGVDKDIGEVHVQVKELLDHLGNDKTGQR 115
Query: 121 FVRYQIRTGHGKPNGVLSFCYKLKGMTIKKGEIPSPEVCLSPGIHSSKEKVN-Y-PCIEV 178
+V YQI GK +SF Y G E+P+ C + V+ Y P +
Sbjct: 116 YVTYQI----GKSKADISFTYSFTGPV----EVPTGGGCSRYAAQAPVRPVSTYRPVLNG 167
Query: 179 DDLSSPGICYPPLDYVYSPLPGFYSPPPNYQYEATRGYGTTLPPLSPVQVSSLM--VASG 236
LS + P L + P+ + P Q + G L L+ +S L+ V S
Sbjct: 168 PMLSQ--LNGPVLSQLNGPVLSQLNGPVLSQLQ-----GPVLSQLNGPVLSQLLPSVGSF 220
Query: 237 SHYH-PCPSP 245
S+ H PC P
Sbjct: 221 SYNHVPCQPP 230
|
|
| TAIR|locus:2137430 AT4G08380 "AT4G08380" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 114 (45.2 bits), Expect = 0.00065, P = 0.00065
Identities = 46/124 (37%), Positives = 53/124 (42%)
Query: 154 PSPEVCLSPG-IHSSKEKVNY-PCIEVDDLSSPGICYP-PLDYVYSPLPGFYSPPPN--- 207
PSP V SP ++SS Y P SP Y P Y YSP P YSPPP+
Sbjct: 163 PSPYVYKSPPYVYSSPPPYAYSPPPSPYVYKSPPYVYSSPPPYAYSPPPYAYSPPPSPYV 222
Query: 208 -----YQYEATRGYGTTLPPLSPVQVSSLMVASGSH---YHPCPSPYV-KSPWPWQHVQS 258
Y Y + Y + PP V S V S Y P PSPYV KSP P+ +
Sbjct: 223 YKSPPYVYSSPPPYAYSPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYVYKSP-PYVYSSP 281
Query: 259 TGYA 262
YA
Sbjct: 282 PPYA 285
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.136 0.434 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 281 281 0.00083 115 3 11 22 0.39 34
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 612 (65 KB)
Total size of DFA: 235 KB (2127 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.57u 0.08s 25.65t Elapsed: 00:00:02
Total cpu time: 25.57u 0.08s 25.65t Elapsed: 00:00:02
Start: Mon May 20 21:31:41 2013 End: Mon May 20 21:31:43 2013
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|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 281 | |||
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 3e-37 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 2e-08 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 4e-06 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 8e-05 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 1e-04 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 0.001 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 3e-37
Identities = 54/137 (39%), Positives = 76/137 (55%), Gaps = 14/137 (10%)
Query: 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPE 64
TLE+ + S DLK NLF ++ VY+VV I + +Q TP DR+GG NP
Sbjct: 1 TLEITIISAEDLKNVNLFGKMKVYAVVWI-DPS-----------HKQSTPVDRDGGTNPT 48
Query: 65 WNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAV--RFV 122
WN ++F + + L + ++Y E G + IG+V VPLKDL+D + A RF+
Sbjct: 49 WNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFL 108
Query: 123 RYQIRTGHGKPNGVLSF 139
YQ+R GKP GVL+F
Sbjct: 109 SYQLRRPSGKPQGVLNF 125
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-08
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 15/111 (13%)
Query: 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPE 64
TL +K+ S +L + + Y VS+ +KK KT + NP
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKK----------KTKVVK-NTLNPV 49
Query: 65 WNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF 115
WN +F++ + ++Y + IG+V +PL DL+
Sbjct: 50 WNETFEFEVPPPELA----ELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGG 96
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 4e-06
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 17/109 (15%)
Query: 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEW 65
L + V +L A +L + Y VS+ Q+ KT + NP W
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK------------QKFKTKVVK-NTLNPVW 47
Query: 66 NHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDE 114
N +F V + + +++ + +G+V +PL +L+D
Sbjct: 48 NETFEFP----VLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDS 92
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 8e-05
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 15/100 (15%)
Query: 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEW 65
L + V S +L +L + Y VS+ + K KT + NP W
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTK----------KTKVVK-NTLNPVW 49
Query: 66 NHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVH 105
N F++ + L I +Y IG+V
Sbjct: 50 NETFTFEV--TLPELAELRIE--VYDYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 1e-04
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 18/64 (28%)
Query: 16 LKAFNLFNR-----LSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMK 70
LKA NL N+ Y V+ I G +KT TD GG +PEW+ ++
Sbjct: 8 LKARNLPNKRKLDKQDPYCVL-RIGGV------------TKKTKTDFRGGQHPEWDEELR 54
Query: 71 FDIK 74
F+I
Sbjct: 55 FEIT 58
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.001
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 10 VNSCSDLKAFNLFNRLSVYSVVSIING--ELKKKEQRQTCLQRQKTPTDREGGGNPEWNH 67
V +L + Y VS++ G +LKKK KT ++G NP +N
Sbjct: 20 VLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKK----------KTSV-KKGTLNPVFNE 68
Query: 68 MMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKV 104
FD+ A + + + + + + IG+V
Sbjct: 69 AFSFDVPA--EQLEEVSLVITVVDKDSVGRNEVIGQV 103
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 281 | |||
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.93 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.93 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.9 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.89 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.89 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.88 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.88 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.87 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.87 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.86 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.86 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.86 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.85 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.85 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.84 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.84 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.84 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.84 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.84 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.84 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.83 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.83 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.83 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.83 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.83 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.83 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.83 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.83 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.83 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.82 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.82 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.82 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.81 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.81 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.81 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.81 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.8 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.8 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.8 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.8 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.8 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.79 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.79 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.79 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.79 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.79 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.79 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.79 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.79 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.79 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.79 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.79 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.79 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.78 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.78 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.78 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.78 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.77 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.77 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.76 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.76 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.76 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.75 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.75 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.75 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.75 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.74 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.74 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.74 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.74 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.74 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.73 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.73 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.73 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.73 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.73 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.73 | |
| PLN03008 | 868 | Phospholipase D delta | 99.73 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.73 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.72 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.72 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.72 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.72 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.72 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.71 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.69 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.69 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.68 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.68 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.68 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.66 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.64 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.64 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.64 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.62 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.62 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 99.61 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 99.53 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 99.52 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 99.51 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 99.51 | |
| PLN02270 | 808 | phospholipase D alpha | 99.5 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.49 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.48 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.42 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.4 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.38 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.34 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.31 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 99.29 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 99.2 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.19 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.17 | |
| PLN02352 | 758 | phospholipase D epsilon | 99.15 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.95 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.55 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 98.51 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.49 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.36 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 98.26 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 98.18 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 97.99 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 97.97 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.93 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 97.9 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.86 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.78 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 97.7 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 97.44 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 97.39 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 97.31 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 97.31 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 96.96 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 96.86 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 96.86 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 96.75 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 96.47 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 96.24 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 96.22 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 96.18 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 96.12 | |
| PF11618 | 107 | DUF3250: Protein of unknown function (DUF3250); In | 95.86 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 95.4 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 94.93 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 94.14 | |
| KOG1329 | 887 | consensus Phospholipase D1 [Lipid transport and me | 92.63 | |
| cd08679 | 178 | C2_DOCK180_related C2 domains found in Dedicator O | 92.35 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 92.19 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 91.99 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 91.01 | |
| PF14924 | 112 | DUF4497: Protein of unknown function (DUF4497) | 88.03 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 87.67 | |
| cd08696 | 179 | C2_Dock-C C2 domains found in Dedicator Of CytoKin | 86.79 | |
| PF14186 | 147 | Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A | 84.47 | |
| cd08697 | 185 | C2_Dock-D C2 domains found in Dedicator Of CytoKin | 82.9 |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=185.47 Aligned_cols=119 Identities=18% Similarity=0.343 Sum_probs=101.5
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.|+|+|+|++|++|++.+ ++++||||+|++++ +++||+++++++.||+|||+|.|.+.+..
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~-------------~~~kT~v~~~~~~nP~WNe~F~f~v~~~~----- 61 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH-------------AVYETPTAYNGAKNPRWNKTIQCTLPEGV----- 61 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECC-------------EEEEeEEccCCCCCCccCeEEEEEecCCC-----
Confidence 378999999999999988 89999999999965 57899999888999999999999997532
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechh-hhcccCCceEEEEEEEEcCCCC-cceEEEEEEEE
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKD-LIDEFNGAVRFVRYQIRTGHGK-PNGVLSFCYKL 143 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~d-L~~g~~g~~~~vsy~L~~~~GK-~~G~L~Lsl~f 143 (281)
..|.|+|+|++.+++|++||++.|+|.+ +..|. ....||.|...+|+ ..|.|+|+++|
T Consensus 62 ~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~---~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 62 DSIYIEIFDERAFTMDERIAWTHITIPESVFNGE---TLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred cEEEEEEEeCCCCcCCceEEEEEEECchhccCCC---CccccEeCcCccCCCCceEEEEEEeC
Confidence 3799999999999889999999999964 65543 34678888766655 67999999875
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-25 Score=178.87 Aligned_cols=123 Identities=43% Similarity=0.766 Sum_probs=105.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
+|+|+|++|++|+..+.++++||||+|++.+. ++++|+++++++.||+|||+|.|.+....+..+...
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~------------~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~ 68 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPS------------HKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLA 68 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCC------------cccccccccCCCCCCCCCCEEEEEcChHhcccCccE
Confidence 58999999999999988899999999999763 578999987789999999999999986421112358
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCC--ceEEEEEEEEcCCCCcceEEEE
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNG--AVRFVRYQIRTGHGKPNGVLSF 139 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g--~~~~vsy~L~~~~GK~~G~L~L 139 (281)
|.|+|+|.+.+++|++||++.|+|.+++.+... .....+|+|++++||.+|+|+|
T Consensus 69 l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 69 LTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred EEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 999999999878899999999999999987642 2568899999999999999986
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-23 Score=166.25 Aligned_cols=118 Identities=22% Similarity=0.328 Sum_probs=100.1
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
|+|+|+|++|+||++.+.++++||||+|.+.+ .++||+++++++.||+|||+|.|.+.... ..
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-------------~~~kT~~~~~~~~nP~Wne~f~f~v~~~~----~~ 63 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-------------VTKKTKTDFRGGQHPEWDEELRFEITEDK----KP 63 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-------------CccccccccCCCCCCccCceEEEEecCCC----CC
Confidence 68999999999999999999999999999965 46789887777899999999999998632 24
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEE
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKL 143 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f 143 (281)
.|.|+|+|++.. +|++||++.++|.++..+.. ...||.|.+ +|+..|+|+|+++|
T Consensus 64 ~l~i~v~d~~~~-~~~~iG~~~~~l~~~~~~~~---~~~w~~L~~-~~~~~G~i~l~l~f 118 (118)
T cd08681 64 ILKVAVFDDDKR-KPDLIGDTEVDLSPALKEGE---FDDWYELTL-KGRYAGEVYLELTF 118 (118)
T ss_pred EEEEEEEeCCCC-CCcceEEEEEecHHHhhcCC---CCCcEEecc-CCcEeeEEEEEEEC
Confidence 899999999865 49999999999999987532 356778765 67899999999886
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=171.61 Aligned_cols=124 Identities=19% Similarity=0.243 Sum_probs=104.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|+||+..+.+|++||||+|.+++ +++||+++++++.||+|||+|.|.+.+... ..
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~-------------~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~----~~ 63 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN-------------QVLRTRPSQTRNGNPSWNEELMFVAAEPFE----DH 63 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC-------------EEeeeEeccCCCCCCcccCcEEEEecCccC----Ce
Confidence 4899999999999999999999999999975 578999987667999999999999975321 37
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccC-CceEEEEEEEEcCCC--------CcceEEEEEEEEee
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFN-GAVRFVRYQIRTGHG--------KPNGVLSFCYKLKG 145 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~-g~~~~vsy~L~~~~G--------K~~G~L~Lsl~f~p 145 (281)
|.|+|++.+.+++|++||++.|+|.++..+.. +.....||+|.+..| |.+|.|+|.+.|.+
T Consensus 64 l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 64 LILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred EEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 89999999877789999999999999987532 234578999987654 57799999999986
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-22 Score=161.64 Aligned_cols=120 Identities=15% Similarity=0.133 Sum_probs=102.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|++|+..+.+++.||||++.+.+. ...||++++ ++.||+|||+|.|.+.... ..
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~------------~~~kT~~~~-~t~nP~Wne~f~f~v~~~~-----~~ 62 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGK------------TVYKSKTIY-KNLNPVWDEKFTLPIEDVT-----QP 62 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCE------------EEEEeeecc-CCCCCccceeEEEEecCCC-----Ce
Confidence 48999999999999998899999999999652 477999876 5899999999999986421 37
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCC-CcceEEEEEEEEee
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHG-KPNGVLSFCYKLKG 145 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~G-K~~G~L~Lsl~f~p 145 (281)
|.|+|+|++.+++|++||.+.++|.++..+. ....+++|.+..+ +..|+|+|.++|.|
T Consensus 63 l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~---~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 63 LYIKVFDYDRGLTDDFMGSAFVDLSTLELNK---PTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEEeCCCCCCCcceEEEEEEHHHcCCCC---CeEEEEECCCCCCccCceEEEEEEEECC
Confidence 9999999998888999999999999998753 3467889986654 68999999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-22 Score=162.44 Aligned_cols=122 Identities=16% Similarity=0.327 Sum_probs=98.0
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCcc-CCCceE
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVD-NCNHLF 84 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~-~~~~~~ 84 (281)
|+|+|++|+||+..+..+++||||+|.+.+ ++.||+++++ +.||+|||+|.|.+..... ......
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~-------------~~~kT~v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~ 66 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK-------------EKYSTSVKEK-TTSPVWKEECSFELPGLLSGNGNRAT 66 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC-------------eeeeeeeecC-CCCCEeCceEEEEecCcccCCCcCCE
Confidence 589999999999988889999999999964 5789999875 7999999999999976210 011248
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCC---CcceEEEEEEE
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHG---KPNGVLSFCYK 142 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~G---K~~G~L~Lsl~ 142 (281)
|.|+|+|++.+++|++||++.|+|.++.... +.....||+|....+ +.+|+|+|+++
T Consensus 67 l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~-~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 67 LQLTVMHRNLLGLDKFLGQVSIPLNDLDEDK-GRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred EEEEEEEccccCCCceeEEEEEEHHHhhccC-CCcccEEEECcCCCCCCccccceEEEEeC
Confidence 9999999998888999999999999998422 223467999875433 46799999863
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=160.71 Aligned_cols=123 Identities=17% Similarity=0.263 Sum_probs=101.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
+|+|+|++|+||...+..+..||||+|.+.+ +++||++++ ++.||+|||+|.|.+...... ....
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-------------~~~rT~v~~-~t~nP~Wne~f~f~~~~~~~~-~~~~ 65 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG-------------QKKRTRTKP-KDLNPVWNEKLVFNVSDPSRL-SNLV 65 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC-------------EEecceeEc-CCCCCccceEEEEEccCHHHc-cCCe
Confidence 5899999999999988889999999999965 577999976 689999999999999753211 1248
Q ss_pred EEEEEEECCccC-CCeeeEEEEEechhhhcccCCceEEEEEEEEcC--CCCcceEEEEEEEEe
Q 040877 85 IAFDLYSEGVIY-GYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG--HGKPNGVLSFCYKLK 144 (281)
Q Consensus 85 L~~eV~d~~~~~-gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~--~GK~~G~L~Lsl~f~ 144 (281)
|.|+|+|.+.++ +|++||++.|+|+++... +.....||+|.+. .++.+|+|.|++.|+
T Consensus 66 l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~--~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 66 LEVYVYNDRRSGRRRSFLGRVRISGTSFVPP--SEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred EEEEEeeCCCCcCCCCeeeEEEEcHHHcCCC--CCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 999999998776 799999999999999842 2234678888764 356899999999885
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-21 Score=158.42 Aligned_cols=128 Identities=23% Similarity=0.359 Sum_probs=103.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|+||+..+..++.||||+|.+.+..... ...+.||++.+ ++.||+|||+|.|.+.... ..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~------~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~-----~~ 68 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNG------EIDSVQTKTIK-KTLNPKWNEEFFFRVNPRE-----HR 68 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCC------cccceeeeEEc-CCCCCcEeeEEEEEEcCCC-----CE
Confidence 489999999999999988999999999997641100 11367899876 5999999999999987421 37
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCC---ceEEEEEEEEcC--CCCcceEEEEEEEEe
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNG---AVRFVRYQIRTG--HGKPNGVLSFCYKLK 144 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g---~~~~vsy~L~~~--~GK~~G~L~Lsl~f~ 144 (281)
|.|+|+|++.+++|++||++.+++.++..+..+ .....||+|... .|+.+|+|+|++.|.
T Consensus 69 l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 69 LLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred EEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 899999999888899999999999999976432 245678888754 567899999999884
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-21 Score=156.26 Aligned_cols=122 Identities=19% Similarity=0.301 Sum_probs=99.5
Q ss_pred eEEEEEEEeecCCCCCCCC-CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 4 STLELKVNSCSDLKAFNLF-NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~-gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
|.|+|+|++|+||+..+.+ +..||||+|++.++ . .+.||++++ ++.||+|||.|.|.+... .
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~----------~~~kT~~~~-~~~~P~Wne~~~~~v~~~---~-- 64 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-R----------ELARTKVKK-DTSNPVWNETKYILVNSL---T-- 64 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-C----------cceEeeeec-CCCCCcceEEEEEEeCCC---C--
Confidence 7899999999999976544 67899999999763 0 477999976 589999999999998731 1
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
..|.|+|+|++.+++|++||++.++|.++..+.. ....++.+ ..+||.+|+|+++++|.|
T Consensus 65 ~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~--~~~~~~~~-~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 65 EPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPE--QENLTKNL-LRNGKPVGELNYDLRFFP 124 (124)
T ss_pred CEEEEEEEecCCCCCCceeEEEEEEHHHhccCcc--ccCcchhh-hcCCccceEEEEEEEeCC
Confidence 3899999999988789999999999999998642 22234444 358899999999999975
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-21 Score=159.83 Aligned_cols=113 Identities=21% Similarity=0.244 Sum_probs=95.4
Q ss_pred EEEEEEEeecC---CCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 5 TLELKVNSCSD---LKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 5 ~LeVtViSAkd---Lk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
.|+|+|++|++ |+..+..|++||||+|.+++ ++.||++++ ++.||+|||+|.|.+.+..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~-------------~~~rTk~~~-~~~nP~WnE~f~f~v~~~~---- 62 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP-------------KWVRTRTVE-DSSNPRWNEQYTWPVYDPC---- 62 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECC-------------EEeEcCccc-CCCCCcceeEEEEEecCCC----
Confidence 48999999999 88889899999999999954 588999986 5899999999999997532
Q ss_pred ceEEEEEEEECCccC------CCeeeEEEEEechhhhcccCCceEEEEEEEEcCC---CCcceEEEE
Q 040877 82 HLFIAFDLYSEGVIY------GYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGH---GKPNGVLSF 139 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~------gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~---GK~~G~L~L 139 (281)
..|.|+|||++.++ +|++||++.|+|.++..+. ....+|+|...+ +|..|.|++
T Consensus 63 -~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~---~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 63 -TVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDR---VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred -CEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCC---EEeeEEEeEeCCCCCccCCcEEEe
Confidence 37999999998763 8999999999999998753 457899998654 456788875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.5e-21 Score=151.93 Aligned_cols=117 Identities=24% Similarity=0.346 Sum_probs=99.2
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
|.|+|+|++|+||+..+.++++||||+|.+.+ .+.||++++ ++.||+|||+|.|.+.+.. .
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-------------~~~~T~~~~-~t~nP~W~e~f~~~~~~~~-----~ 61 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN-------------ARLQTHTIY-KTLNPEWNKIFTFPIKDIH-----D 61 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC-------------Eeeecceec-CCcCCccCcEEEEEecCcC-----C
Confidence 68999999999999999889999999999965 467999976 4899999999999987421 3
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC--CCCcceEEEEEEEEe
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG--HGKPNGVLSFCYKLK 144 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~--~GK~~G~L~Lsl~f~ 144 (281)
.|.|+|+|++.++++++||++.++|.++..+. ..||.|... .++.+|.|.|+++|.
T Consensus 62 ~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~-----~~~~~l~~~~~~~~~~G~i~l~~~~~ 119 (119)
T cd08377 62 VLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE-----RKWYALKDKKLRTRAKGSILLEMDVI 119 (119)
T ss_pred EEEEEEEECCCCCCCceeeEEEEEHHHCCCCC-----ceEEECcccCCCCceeeEEEEEEEeC
Confidence 79999999998788999999999999987653 357888754 456899999999873
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.8e-21 Score=153.61 Aligned_cols=116 Identities=17% Similarity=0.263 Sum_probs=96.4
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEE
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFI 85 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L 85 (281)
|+|+|++|++|+..+.+++.||||+|.+.+... .+.||++++ ++.||+|||+|.|.+.... ...|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~----------~~~kT~vv~-~t~nP~Wne~f~f~i~~~~----~~~l 66 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASD----------EKKRTKTIK-NSINPVWNETFEFRIQSQV----KNVL 66 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCC----------ccCccceec-CCCCCccceEEEEEeCccc----CCEE
Confidence 799999999999988889999999999965321 477999986 4899999999999997542 1379
Q ss_pred EEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEE
Q 040877 86 AFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKL 143 (281)
Q Consensus 86 ~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f 143 (281)
+|+|+|++.+ +|++||++.++|.++..|. ....+|+|.. +.+|+|++.+.|
T Consensus 67 ~v~v~d~d~~-~~~~iG~~~~~l~~l~~g~---~~~~~~~L~~---~~~g~l~~~~~~ 117 (119)
T cd04036 67 ELTVMDEDYV-MDDHLGTVLFDVSKLKLGE---KVRVTFSLNP---QGKEELEVEFLL 117 (119)
T ss_pred EEEEEECCCC-CCcccEEEEEEHHHCCCCC---cEEEEEECCC---CCCceEEEEEEe
Confidence 9999999987 9999999999999998763 3567888743 468888888876
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=157.31 Aligned_cols=120 Identities=22% Similarity=0.308 Sum_probs=98.5
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.|.|+|+|++|+||+..+.+++.||||+|.+.+ ++.||++++ ++.||+|||+|.|.+.+...
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~-------------~~~kT~vi~-~t~nP~Wne~f~f~v~~~~~---- 75 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS-------------QEHKTKVVS-DTLNPKWNSSMQFFVKDLEQ---- 75 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC-------------EeeeccccC-CCCCCccCceEEEEecCccC----
Confidence 378999999999999999899999999999854 578999976 58999999999999975321
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCC--ceEEEEEEEEcCCCCcceEEEEEEEE
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNG--AVRFVRYQIRTGHGKPNGVLSFCYKL 143 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g--~~~~vsy~L~~~~GK~~G~L~Lsl~f 143 (281)
..|.|+|||++.+++|++||.+.++|.+|+..... .....+..+ +++.+|+|+|++.|
T Consensus 76 ~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~~~~g~i~l~~~~ 135 (136)
T cd08375 76 DVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL---HEVPTGEVVVKLDL 135 (136)
T ss_pred CEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc---ccccceeEEEEEEe
Confidence 38999999999888899999999999999974321 111222332 57889999999987
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.7e-21 Score=156.42 Aligned_cols=112 Identities=15% Similarity=0.147 Sum_probs=87.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
+|+|+|++|+||+..+ .|++||||+|++.+..... ..+++||++. +++.||+|||+|.|.|..... .....
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~------k~~k~kTkv~-~~tlnPvwNE~f~F~v~~~~~-~~~~~ 71 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSD------KKRKFATKSK-NNNWSPKYNETFQFILGNEDD-PESYE 71 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcc------cccEeeeEEe-cCCCCCccCcEEEEEeeCcCC-CceeE
Confidence 5899999999999877 4999999999996521110 0156799997 579999999999999984321 12468
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
|+|+|+|++.+++|++||++.|+|+++..+. ....|++|..
T Consensus 72 L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~---~~~~w~~L~~ 112 (120)
T cd08395 72 LHICVKDYCFARDDRLVGVTVLQLRDIAQAG---SCACWLPLGR 112 (120)
T ss_pred EEEEEEEecccCCCCEEEEEEEEHHHCcCCC---cEEEEEECcC
Confidence 9999999986667999999999999999764 2466777754
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-20 Score=152.41 Aligned_cols=119 Identities=20% Similarity=0.191 Sum_probs=96.4
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+.. +..||||+|.+++. ++.||++. ++.||+|||+|.|.+.....
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~------------~~~kT~v~--~~~nP~WnE~f~f~~~~~~~---- 61 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEV------------KVARTKVR--EGPNPVWSEEFVFDDLPPDV---- 61 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCE------------eEEEeecC--CCCCCccCCEEEEecCCCCc----
Confidence 36899999999999874 46899999999652 45789973 47999999999998754321
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCC---CCcceEEEEEEEEee
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGH---GKPNGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~---GK~~G~L~Lsl~f~p 145 (281)
..|.|+|+|.+.+++|++||++.|+|.++..+. ....||.|...+ ++..|.|+|+++|.+
T Consensus 62 ~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~---~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 62 NSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQ---ETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CEEEEEEEECCCCCCCCeEEEEEEEHhHccCCC---cccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 268899999998888999999999999988753 346788887543 346799999999976
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-20 Score=159.10 Aligned_cols=119 Identities=18% Similarity=0.338 Sum_probs=98.2
Q ss_pred eEEEEEEEeecCCCCCC------------------------------CCCCCCeEEEEEEecCccchhhhhccccceEEe
Q 040877 4 STLELKVNSCSDLKAFN------------------------------LFNRLSVYSVVSIINGELKKKEQRQTCLQRQKT 53 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~------------------------------~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KT 53 (281)
|+|+|+|++|++|.+.| ..|++||||+|.+.+. +..||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~------------~~~rT 74 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGA------------RVART 74 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCe------------EeeEE
Confidence 89999999999999876 3467899999999763 35699
Q ss_pred eecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCC-
Q 040877 54 PTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGK- 132 (281)
Q Consensus 54 kV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK- 132 (281)
++++ ++.||+|||+|.|.+.... ..|.|+|+|++.+ ++++||++.|+|+++..+. ....||+|.+.+|+
T Consensus 75 ~v~~-~~~nP~WnE~F~~~~~~~~-----~~l~~~V~d~d~~-~~~~IG~~~i~l~~l~~g~---~~~~w~~L~~~~~~~ 144 (158)
T cd04015 75 RVIE-NSENPVWNESFHIYCAHYA-----SHVEFTVKDNDVV-GAQLIGRAYIPVEDLLSGE---PVEGWLPILDSNGKP 144 (158)
T ss_pred EEeC-CCCCCccceEEEEEccCCC-----CEEEEEEEeCCCc-CCcEEEEEEEEhHHccCCC---CcceEEECcCCCCCC
Confidence 9986 4799999999999987432 2789999999865 6789999999999998753 34678999877665
Q ss_pred --cceEEEEEEEEe
Q 040877 133 --PNGVLSFCYKLK 144 (281)
Q Consensus 133 --~~G~L~Lsl~f~ 144 (281)
..|.|+|+++|.
T Consensus 145 ~~~~~~l~v~~~f~ 158 (158)
T cd04015 145 PKPGAKIRVSLQFT 158 (158)
T ss_pred CCCCCEEEEEEEEC
Confidence 357999999984
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.2e-20 Score=150.60 Aligned_cols=118 Identities=17% Similarity=0.305 Sum_probs=97.7
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEE
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFI 85 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L 85 (281)
|.|+|++|+||.. .+++.||||++.+.... ++.||++++ ++.||+|||+|.|.+... ...|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~-----------~~~kT~v~~-~t~nP~Wne~f~f~~~~~-----~~~l 61 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPP-----------QKYQSSTQK-NTSNPFWDEHFLFELSPN-----SKEL 61 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCC-----------cEEEeEEEe-cCCCCccCceEEEEeCCC-----CCEE
Confidence 6799999999987 67899999999996321 578999986 579999999999999642 1379
Q ss_pred EEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC---CCCcceEEEEEEEEee
Q 040877 86 AFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG---HGKPNGVLSFCYKLKG 145 (281)
Q Consensus 86 ~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~---~GK~~G~L~Lsl~f~p 145 (281)
.|+|+|.+.+++|++||++.++|.++..+... ..+|+|... +++.+|+|++.+.|.+
T Consensus 62 ~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~---~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 62 LFEVYDNGKKSDSKFLGLAIVPFDELRKNPSG---RQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred EEEEEECCCCCCCceEEEEEEeHHHhccCCce---eEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 99999999888899999999999999976532 456777644 3568999999999987
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-20 Score=151.90 Aligned_cols=116 Identities=17% Similarity=0.231 Sum_probs=96.1
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEE
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFI 85 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L 85 (281)
|+|+|++|+||+.. +.||||+|.+.+ ++.||++++ ++.||+|||+|.|.+.... ...|
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~-------------~~~kT~v~~-~t~nP~Wne~F~f~~~~~~----~~~L 59 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGN-------------YKGSTKAIE-RTSNPEWNQVFAFSKDRLQ----GSTL 59 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECC-------------ccccccccC-CCCCCccceEEEEEcCCCc----CCEE
Confidence 89999999999877 689999999964 477999976 5899999999999987532 1489
Q ss_pred EEEEEECCccCCCeeeEEEEEechhhhcccC--CceEEEEEEEEcCC-CCcceEEEEEEEEe
Q 040877 86 AFDLYSEGVIYGYRSIGKVHVPLKDLIDEFN--GAVRFVRYQIRTGH-GKPNGVLSFCYKLK 144 (281)
Q Consensus 86 ~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~--g~~~~vsy~L~~~~-GK~~G~L~Lsl~f~ 144 (281)
.|+|+|++.+ +|++||.+.++|+++..+.. +.....||.|.... .+..|+|+|+++|+
T Consensus 60 ~~~v~d~d~~-~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 60 EVSVWDKDKA-KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred EEEEEeCCCC-cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 9999999975 89999999999999976432 22346789987654 47889999999996
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.5e-20 Score=150.08 Aligned_cols=118 Identities=18% Similarity=0.267 Sum_probs=97.2
Q ss_pred EEEEEEEeecCCCCCC-CCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 5 TLELKVNSCSDLKAFN-LFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~-~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
.|.|+|++|+||+..+ ..+..||||+|.+.+. .+.||++.+ ++.||+|||+|.|.+.+.. .
T Consensus 1 ~l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~------------~~~kT~v~~-kt~~P~WnE~F~f~v~~~~-----~ 62 (121)
T cd08401 1 SLKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQE------------EVFRTKTVE-KSLCPFFGEDFYFEIPRTF-----R 62 (121)
T ss_pred CeEEEEEEccCCCCCCCCCCCcCcEEEEEECCc------------cEEEeeEEE-CCCCCccCCeEEEEcCCCC-----C
Confidence 3789999999999864 3478899999999542 467899976 5999999999999998531 3
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc--CCCCcceEEEEEEEE
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT--GHGKPNGVLSFCYKL 143 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~--~~GK~~G~L~Lsl~f 143 (281)
.|.|+|+|.+.+++|++||.+.++|.++..+. ....||.|.. .+++.+|.|+|+++|
T Consensus 63 ~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~---~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 63 HLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYY---GKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEEECCCCCCCceEEEEEEEHHHccCCC---CcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 89999999998888999999999999998753 2467888764 356679999999886
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-20 Score=149.85 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=97.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
+|+|+|++|+||+..+..+..||||+|.+.+ .+.||++++ ++.||+|||+|.|.+.... ...
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~-------------~~~kT~v~~-~t~nP~Wne~f~f~~~~~~----~~~ 62 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG-------------QTLETSVVK-KSCYPRWNEVFEFELMEGA----DSP 62 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECC-------------EEEeceeec-CCCCCccCcEEEEEcCCCC----CCE
Confidence 4899999999999988888999999999854 467899976 5899999999999998642 147
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc------CCCCcceEEEEEEE
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT------GHGKPNGVLSFCYK 142 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~------~~GK~~G~L~Lsl~ 142 (281)
|.|+|+|++.++++++||.+.++|.++..+.. ...||.|.. .+++..|.|+|.|+
T Consensus 63 l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~---~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 63 LSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQ---EEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred EEEEEEECCCCCCCcEeEEEEEEHHHcccCCC---CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 99999999988889999999999999976432 245777764 25677899999764
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-20 Score=152.66 Aligned_cols=109 Identities=20% Similarity=0.208 Sum_probs=88.8
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEe-ccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDI-KAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V-~~~~~~~~ 81 (281)
.++|+|+|++|+||...+ .+..||||+|.+.++..+ ..++||++++ ++.||+|||+|.|.+ +.....
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~--------~~~~kT~v~~-~~~nP~wnE~F~f~~~~~~~l~-- 79 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQK--------TTKRKTKVVR-KTRNPTFNEMLVYDGLPVEDLQ-- 79 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCcc--------CCceeCCccC-CCCCCCcccEEEEecCChHHhC--
Confidence 368999999999999988 889999999999875322 2688999986 589999999999998 432222
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
...|.|+|+|++.+.+|++||++.|+|+++..+. ....||.|
T Consensus 80 ~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~---~~~~W~~L 121 (122)
T cd08381 80 QRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQ---ETEKWYPL 121 (122)
T ss_pred CCEEEEEEEeCCCCcCCcEEEEEEEeccccccCC---CccceEEC
Confidence 2489999999998888999999999999988642 23566664
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=149.61 Aligned_cols=120 Identities=21% Similarity=0.293 Sum_probs=98.2
Q ss_pred CCceEEEEEEEeecCCCCCCCC----------CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEE
Q 040877 1 MEWSTLELKVNSCSDLKAFNLF----------NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMK 70 (281)
Q Consensus 1 Me~g~LeVtViSAkdLk~~~~~----------gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~ 70 (281)
|-.|.|+|+|++|+||+..+.. +..||||+|.+++. +..||++.+ ++.||+|||+|.
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~------------~~~kT~~~~-~t~~P~Wne~f~ 67 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDT------------HIGKTSTKP-KTNSPVWNEEFT 67 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCE------------EEeEEeEcC-CCCCCCcceeEE
Confidence 6779999999999999987752 57899999999652 356899866 589999999999
Q ss_pred EEeccCccCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 71 FDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 71 F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
|.+.+. ..|.|+|++.+.++.|++||++.++|.++..+. +.....||.|. ++|.|++.+++..
T Consensus 68 ~~v~~~------~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~-~~~~~~w~~L~-----~~G~l~l~~~~~~ 130 (132)
T cd04014 68 TEVHNG------RNLELTVFHDAAIGPDDFVANCTISFEDLIQRG-SGSFDLWVDLE-----PQGKLHVKIELKG 130 (132)
T ss_pred EEcCCC------CEEEEEEEeCCCCCCCceEEEEEEEhHHhcccC-CCcccEEEEcc-----CCcEEEEEEEEec
Confidence 999631 379999999888778999999999999999841 12346777773 6799999998864
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.1e-20 Score=148.79 Aligned_cols=98 Identities=22% Similarity=0.370 Sum_probs=84.3
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
|+|+|+|++|+||+..+.++++||||+|++.+ ++++|++.++++.||+|||+|.|.+...... ...
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~-------------~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~-~~~ 66 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT-------------QERKSKVAKGDGRNPEWNEKFKFTVEYPGWG-GDT 66 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC-------------EeeeeeEcCCCCCCCcccceEEEEecCcccC-CCC
Confidence 68999999999999999889999999999954 4678888876789999999999999865211 124
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhccc
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF 115 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~ 115 (281)
.|.|+|+|.+.+.+|++||++.++|++++.+.
T Consensus 67 ~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~ 98 (124)
T cd04049 67 KLILRIMDKDNFSDDDFIGEATIHLKGLFEEG 98 (124)
T ss_pred EEEEEEEECccCCCCCeEEEEEEEhHHhhhCC
Confidence 89999999998888999999999999998754
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.6e-20 Score=148.19 Aligned_cols=122 Identities=19% Similarity=0.279 Sum_probs=98.9
Q ss_pred eEEEEEEEeecCCCCCCC--CCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 4 STLELKVNSCSDLKAFNL--FNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~--~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
|.|+|+|++|+||...+. .+..||||+|.+.+ ++.||++++ ++.||+|||+|.|.+.+..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~-------------~~~kT~~~~-~t~~P~Wne~f~~~~~~~~---- 62 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA-------------QRFKTQTIP-NTLNPKWNYWCEFPIFSAQ---- 62 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC-------------EEEecceec-CCcCCccCCcEEEEecCCC----
Confidence 679999999999998887 88999999999853 578999976 5899999999999998522
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCC----CCcceEEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGH----GKPNGVLSFCYKL 143 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~----GK~~G~L~Lsl~f 143 (281)
...|.|+|+|.+.+++|++||.+.|+|.++...........||.|.... ++.+|+|+|.+.|
T Consensus 63 ~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 63 NQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 1389999999998778999999999999998532112345677776442 3478999998864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=145.10 Aligned_cols=115 Identities=14% Similarity=0.206 Sum_probs=96.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|+||+..+.++..||||++.+.+ ++.||++.+ ++.||+|||+|.|.+.+.. ...
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~-------------~~~kT~v~~-~t~nP~Wne~f~f~~~~~~----~~~ 62 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN-------------EKYKSKVCS-KTLNPQWLEQFDLHLFDDQ----SQI 62 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECC-------------EeEeccccc-CCCCCceeEEEEEEecCCC----CCE
Confidence 3799999999999998889999999999954 578999976 5999999999999997542 138
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEe
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLK 144 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~ 144 (281)
|.|+|+|.+.+++|++||.+.++|+++..+. ....||+|... +|.|+|.+.+.
T Consensus 63 l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~---~~~~w~~L~~~----~G~~~~~~~~~ 115 (116)
T cd08376 63 LEIEVWDKDTGKKDEFIGRCEIDLSALPREQ---THSLELELEDG----EGSLLLLLTLT 115 (116)
T ss_pred EEEEEEECCCCCCCCeEEEEEEeHHHCCCCC---ceEEEEEccCC----CcEEEEEEEec
Confidence 9999999998888999999999999988653 45788888542 58898887764
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=147.68 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=96.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|.|+|++|++|+..+..++.||||+|.+.+. ...||+++++ +.||+|||+|.|.+.... ..
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~------------~~~kT~v~~~-t~nP~Wne~f~~~~~~~~-----~~ 62 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDNE------------VIIRTATVWK-TLNPFWGEEYTVHLPPGF-----HT 62 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCCCCceEEEEECCE------------eeeeeeeEcC-CCCCcccceEEEeeCCCC-----CE
Confidence 48999999999999999999999999999652 3569999864 899999999999986421 37
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc--CCCCcceEEEEEEE
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT--GHGKPNGVLSFCYK 142 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~--~~GK~~G~L~Lsl~ 142 (281)
|.|+|+|++.++.|++||++.+++.++..+.. ....|+.|+. .+++..|+|+|.++
T Consensus 63 l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~--~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 63 VSFYVLDEDTLSRDDVIGKVSLTREVISAHPR--GIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEECCCCCCCCEEEEEEEcHHHhccCCC--CCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999999988889999999999988875321 2345777753 45668899999876
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-20 Score=152.27 Aligned_cols=113 Identities=21% Similarity=0.329 Sum_probs=91.6
Q ss_pred ceEEEEEEEeecCCCCCCCC-CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLF-NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~-gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
.+.|.|+|++|+||...+.. +..||||+|.+.++..+ ..++||++.+ ++.||+|||+|.|.|....+.
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~--------~~k~kT~v~~-~t~nPvfNE~F~f~v~~~~l~-- 82 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSH--------NSKRKTAVKK-GTVNPVFNETLKYVVEADLLS-- 82 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcc--------cceeeccccc-CCCCCccceEEEEEcCHHHhC--
Confidence 47899999999999988764 89999999999876322 1588999976 599999999999999764432
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
...|.|.|++.+.+.++++||++.|+|+++.-.........||.|
T Consensus 83 ~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 83 SRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred CcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 258999999999888899999999999998544323345667765
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=147.64 Aligned_cols=115 Identities=20% Similarity=0.218 Sum_probs=97.5
Q ss_pred EEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEE
Q 040877 10 VNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDL 89 (281)
Q Consensus 10 ViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV 89 (281)
||+|+||++ .+++.||||+|.+.+ .++||++.+ ++.||+|||+|.|.+....+. ...|.|+|
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~-------------~~~kT~v~~-~~~nP~Wne~f~f~~~~~~~~--~~~l~~~v 63 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRG-------------VKKKTRVLE-NELNPVWNETFEWPLAGSPDP--DESLEIVV 63 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECC-------------EeeecceeC-CCcCCcccceEEEEeCCCcCC--CCEEEEEE
Confidence 899999998 679999999999965 467999986 579999999999999754222 24899999
Q ss_pred EECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCC-cceEEEEEEEEee
Q 040877 90 YSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGK-PNGVLSFCYKLKG 145 (281)
Q Consensus 90 ~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK-~~G~L~Lsl~f~p 145 (281)
++++.+++|++||++.++|.++..+. ....+++|.+.+++ .+|+|++++.|.+
T Consensus 64 ~d~~~~~~d~~iG~~~~~l~~l~~~~---~~~~~~~L~~~~~~~~~~~l~l~~~~~~ 117 (127)
T cd08373 64 KDYEKVGRNRLIGSATVSLQDLVSEG---LLEVTEPLLDSNGRPTGATISLEVSYQP 117 (127)
T ss_pred EECCCCCCCceEEEEEEEhhHcccCC---ceEEEEeCcCCCCCcccEEEEEEEEEeC
Confidence 99998888999999999999998753 35678999877666 4899999999998
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-20 Score=152.34 Aligned_cols=97 Identities=10% Similarity=0.126 Sum_probs=81.5
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|.|+||+|+||+ ..+.+||||+|.+..+..+ .|+||+|.+ ++.||+|||+|.|+|+...+. .
T Consensus 13 ~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~---------~k~kT~v~r-ktlnPvfnE~f~F~v~~~~l~--~ 77 (118)
T cd08677 13 KAELHVNILEAENIS---VDAGCECYISGCVSVSEGQ---------KEAQTALKK-LALHTQWEEELVFPLPEEESL--D 77 (118)
T ss_pred CCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCc---------cEEEcceec-CCCCCccccEEEEeCCHHHhC--C
Confidence 478999999999999 2467999999999754211 577999976 599999999999999865443 3
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDE 114 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g 114 (281)
.+|.|.|+|+|++++|++||++.+++.++..+
T Consensus 78 ~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~ 109 (118)
T cd08677 78 GTLTLTLRCCDRFSRHSTLGELRLKLADVSMM 109 (118)
T ss_pred cEEEEEEEeCCCCCCCceEEEEEEccccccCC
Confidence 58999999999999999999999999987443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=147.52 Aligned_cols=116 Identities=16% Similarity=0.291 Sum_probs=94.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|++|+..+.+++.||||+|.+.+. +++||++++ ++.||+|||+|.|.+.. . ..
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~------------~~~kT~v~~-~t~nP~Wne~f~~~~~~----~--~~ 61 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGG------------QTHSTDVAK-KTLDPKWNEHFDLTVGP----S--SI 61 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCc------------cceEccEEc-CCCCCcccceEEEEeCC----C--CE
Confidence 48999999999999998999999999999653 578999976 58999999999999974 1 38
Q ss_pred EEEEEEECCccCC--CeeeEEEEEechhhhcccCCceEEEEEEEEcC----CCCcceEEEEEE
Q 040877 85 IAFDLYSEGVIYG--YRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG----HGKPNGVLSFCY 141 (281)
Q Consensus 85 L~~eV~d~~~~~g--Dk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~----~GK~~G~L~Lsl 141 (281)
|.|+|+|++.++. |++||++.+++++|+....+ ...+|+|+.. .|+..|.|.+.+
T Consensus 62 l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 62 ITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDT--GYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EEEEEEECCCCCCCCCceEeEEEEEHHHccccCCC--ccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999997754 58999999999999875432 2346777543 456789988875
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-19 Score=147.74 Aligned_cols=118 Identities=13% Similarity=0.176 Sum_probs=96.8
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
...|+|+|++|++|+..+.+++.||||+|.+.+ ++.||++++ ++.||+|||.|.|.+... .
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~-------------~~~kT~v~~-~t~nP~Wne~f~f~~~~~-----~ 62 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG-------------ESVRSPVQK-DTLSPEFDTQAIFYRKKP-----R 62 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC-------------EEEEeCccC-CCCCCcccceEEEEecCC-----C
Confidence 468999999999999999899999999999865 578999976 689999999999988642 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEE----cCCCCcceEEEEEEEEee
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIR----TGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~----~~~GK~~G~L~Lsl~f~p 145 (281)
..|.|+|||++.+ +|++||++.+++.++..+. ..+|+|. +.+|+..|+|.|.+.+.+
T Consensus 63 ~~l~i~V~d~~~~-~d~~lG~~~~~l~~~~~~~-----~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 63 SPIKIQVWNSNLL-CDEFLGQATLSADPNDSQT-----LRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CEEEEEEEECCCC-CCCceEEEEEecccCCCcC-----ceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 4899999999865 6999999999998864321 2334442 357889999999988765
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-20 Score=159.43 Aligned_cols=94 Identities=23% Similarity=0.368 Sum_probs=86.0
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
-|.|+|+|++|.||...|+.+++||||++.+++ ++.||++.. ++.||+|||+|+|.|.+..
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~-------------q~lkT~~v~-~n~NPeWNe~ltf~v~d~~----- 65 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN-------------QKLKTRVVY-KNLNPEWNEELTFTVKDPN----- 65 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEECC-------------eeeeeeeec-CCCCCcccceEEEEecCCC-----
Confidence 489999999999999999889999999999976 699999865 6999999999999999653
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhccc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF 115 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~ 115 (281)
..|.++|||+|.|..|+++|+|.|+|+.++...
T Consensus 66 ~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 66 TPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred ceEEEEEEeCCCCCcccccceeeeccHHHHHHh
Confidence 489999999999999999999999999999864
|
|
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-19 Score=147.67 Aligned_cols=110 Identities=16% Similarity=0.223 Sum_probs=88.5
Q ss_pred ceEEEEEEEeecCCCCCCC-CCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNL-FNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~-~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
.++|.|+|++|+||...+. .++.||||+|.+.++..+ ..++||++++ ++.||+|||+|.|.|....+..
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~--------~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~l~~- 83 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSR--------QSKRKTSIKR-NTTNPVYNETLKYSISHSQLET- 83 (125)
T ss_pred CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCcc--------ccceEeeeee-CCCCCcccceEEEECCHHHhCC-
Confidence 5789999999999987754 588999999999765321 1578999876 5899999999999997543322
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
..|.|+|+|++.++++++||++.|+|.++.... ....||+|
T Consensus 84 -~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~---~~~~w~~l 124 (125)
T cd04029 84 -RTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDS---QHEECLPL 124 (125)
T ss_pred -CEEEEEEEECCCCCCCcEEEEEEEeCCcccccC---CcccEEEC
Confidence 489999999998889999999999999987653 23566665
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-19 Score=146.83 Aligned_cols=127 Identities=20% Similarity=0.262 Sum_probs=99.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCc-----cC
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFV-----DN 79 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~-----~~ 79 (281)
.|+|+|++|++|...+.+++.||||+|.+.+ +++||++++ ++.||+|||+|.|.+.... ..
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~-------------~~~kT~v~~-~t~nP~Wne~~~f~~~~~~~~~~~~~ 67 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN-------------QSQETEVIK-ETLSPTWDQTLIFDEVELYGSPEEIA 67 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECC-------------eeeEeeeEc-CCCCCccCcEEEEeeeeccCChHHhh
Confidence 5899999999999999899999999999964 578999986 5899999999999864211 00
Q ss_pred CCceEEEEEEEECCccCCCeeeEEEEE-echhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEeee
Q 040877 80 CNHLFIAFDLYSEGVIYGYRSIGKVHV-PLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKGM 146 (281)
Q Consensus 80 ~~~~~L~~eV~d~~~~~gDk~IG~v~V-pL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p~ 146 (281)
.+...|.|+|+|++.++.|++||++.+ ++..+.....+.....||.|. ..|+.+|+|.|++.+.++
T Consensus 68 ~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 68 QNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-KGGQSAGELLAAFELIEV 134 (135)
T ss_pred cCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-cCCCchhheeEEeEEEEe
Confidence 112478999999998888999999987 555444322233456788886 467799999999999874
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-19 Score=147.83 Aligned_cols=110 Identities=16% Similarity=0.223 Sum_probs=88.9
Q ss_pred ceEEEEEEEeecCCCCCCCC-CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLF-NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~-gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
.+.|+|+|++|+||...+.. +..||||+|.+.++..+ ..++||++++ ++.||+|||+|.|.+....+..
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~--------~~~~kT~v~~-~t~nP~~nE~f~f~v~~~~l~~- 83 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSN--------RGKRKTSVKK-KTLNPVFNETLRYKVEREELPT- 83 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCc--------cccccCccCc-CCCCCccCceEEEECCHHHhCC-
Confidence 36899999999999998865 78999999999865321 1467999986 5899999999999997543322
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
..|.|+|+|.+.++++++||++.|+|+++.... ....||.|
T Consensus 84 -~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~---~~~~W~~L 124 (125)
T cd08393 84 -RVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSN---TQPTWYPL 124 (125)
T ss_pred -CEEEEEEEeCCCCCCCcEeEEEEEecCccccCC---CCcceEEC
Confidence 489999999998888999999999999986542 23456665
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-19 Score=142.42 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=94.7
Q ss_pred eEEEEEEEeecCCCCCCC------CCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCc
Q 040877 4 STLELKVNSCSDLKAFNL------FNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFV 77 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~------~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~ 77 (281)
|.|+|+|++|+||+..+. .++.||||+|.+.+ ++.||++.+ ++.||+|||+|.|.+.+..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-------------~~~kT~~~~-~t~~P~W~e~f~~~v~~~~ 66 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-------------QTFKSKVIK-ENLNPKWNEVYEAVVDEVP 66 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-------------EeEEccccC-CCCCCcccceEEEEeCCCC
Confidence 579999999999998764 26899999999965 478999976 5899999999999997532
Q ss_pred cCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEE
Q 040877 78 DNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKL 143 (281)
Q Consensus 78 ~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f 143 (281)
...|.|+|+|++.+ +|++||.+.++|.++..+. ....||.|.+ ..+|.|+|.++|
T Consensus 67 ----~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~~~~---~~~~w~~L~~---~~~G~~~~~~~~ 121 (121)
T cd08391 67 ----GQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKG---FIDEWLPLED---VKSGRLHLKLEW 121 (121)
T ss_pred ----CCEEEEEEEecCCC-CCCcEEEEEEEHHHhcccC---ccceEEECcC---CCCceEEEEEeC
Confidence 13899999999976 8999999999999998743 2457888754 378999998875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=140.14 Aligned_cols=122 Identities=22% Similarity=0.285 Sum_probs=98.4
Q ss_pred eEEEEEEEeecCCCCCC--CCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 4 STLELKVNSCSDLKAFN--LFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~--~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
..|+|+|++|+||+..+ ..+..||||+|++.+...+. ..+.||+++++++.||+|||+|.|.+....
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~-------~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~---- 70 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADD-------SAKFKTKVVKNNGFNPVWNETFEFDVTVPE---- 70 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCC-------CCcEeeeeecCCCcCCccCCcEEEEEeCCC----
Confidence 37999999999999877 57889999999997653200 157899998766679999999999998432
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCC--cceEEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGK--PNGVLSFCYKL 143 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK--~~G~L~Lsl~f 143 (281)
...|.|+|+|.+.. +|++||++.++|++|..++ .+++|++.+|+ ..|.|.+.+++
T Consensus 71 ~~~l~~~V~d~~~~-~~~~iG~~~~~l~~l~~g~------~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 71 LAFLRFVVYDEDSG-DDDFLGQACLPLDSLRQGY------RHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred eEEEEEEEEeCCCC-CCcEeEEEEEEhHHhcCce------EEEEecCCCCCCCcceeEEEEEEE
Confidence 24899999999977 8999999999999996642 46788887775 56888887765
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-19 Score=143.19 Aligned_cols=95 Identities=14% Similarity=0.238 Sum_probs=81.1
Q ss_pred eEEEEEEEeecCCCCCCCC----CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccC
Q 040877 4 STLELKVNSCSDLKAFNLF----NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDN 79 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~----gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~ 79 (281)
|.|.|+|++|+||+..+.. +..||||+|.+.+ +++||++++ ++.||+|||+|.|.+.....
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~-------------~~~kT~v~~-~t~nPvWne~f~f~v~~~~~- 65 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR-------------RVFRTSWRR-HTLNPVFNERLAFEVYPHEK- 65 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC-------------EeEeeeeec-CCCCCcccceEEEEEeCccC-
Confidence 6799999999999987643 3589999999853 577999987 48999999999999875332
Q ss_pred CCceEEEEEEEECCccCCCeeeEEEEEechhhhccc
Q 040877 80 CNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF 115 (281)
Q Consensus 80 ~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~ 115 (281)
...|.|+|||.+.++.|++||++.++|.+|+.++
T Consensus 66 --~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 66 --NFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred --CCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 2489999999998888999999999999999876
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-19 Score=142.74 Aligned_cols=108 Identities=19% Similarity=0.215 Sum_probs=88.4
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||...+..++.||||+|.+.++.. +++||++++ ++.||+|||+|.|.+...... .
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~----------~~~kT~v~~-~t~nP~wne~f~f~i~~~~l~--~ 81 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKK----------KKFETKVHR-KTLNPVFNETFTFKVPYSELG--N 81 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCC----------CceecccCc-CCCCCceeeeEEEeCCHHHhC--C
Confidence 478999999999999988889999999999976421 477999976 589999999999999753222 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
..|.|+|+|.+.+++|++||++.++|.++..+. ....|+.|
T Consensus 82 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~---~~~~W~~l 122 (124)
T cd08385 82 KTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGH---VTEEWRDL 122 (124)
T ss_pred CEEEEEEEeCCCCCCCceeEEEEEecCcccCCC---CcceEEEc
Confidence 489999999998888999999999999986643 23456654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.6e-19 Score=139.72 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=95.8
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEE
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFI 85 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L 85 (281)
|+|+|++|++|...+..+++||||+|.+.+. ...+|++.+ ++.||+|||+|.|.+.... ...|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~------------~~~~T~v~~-~~~~P~Wne~f~~~~~~~~----~~~l 63 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGE------------KVFKTKTIK-KTLNPVWNESFEVPVPSRV----RAVL 63 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCC------------cceeeceec-CCCCCcccccEEEEeccCC----CCEE
Confidence 6899999999999888899999999999653 467999975 6999999999999997532 2489
Q ss_pred EEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEE
Q 040877 86 AFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSF 139 (281)
Q Consensus 86 ~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~L 139 (281)
.|+|+|.+.++++++||++.+++.++..+. ....+++|...+|...|+|-|
T Consensus 64 ~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~---~~~~~~~L~~~g~~~~~~~~~ 114 (115)
T cd04040 64 KVEVYDWDRGGKDDLLGSAYIDLSDLEPEE---TTELTLPLDGQGGGKLGAVFL 114 (115)
T ss_pred EEEEEeCCCCCCCCceEEEEEEHHHcCCCC---cEEEEEECcCCCCccCceEEc
Confidence 999999998888999999999999998753 356788887767778888754
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.4e-19 Score=142.69 Aligned_cols=110 Identities=16% Similarity=0.192 Sum_probs=88.8
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+..+.++..||||+|.+.++..+ ..++||++++ ++.||+|||+|.|.+.......
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~--------~~~~kT~v~~-~~~nP~wne~f~f~i~~~~l~~-- 83 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSK--------STRRKTSVKK-DNLNPVFDETFEFPVSLEELKR-- 83 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCC--------CceEeccccc-CCCCCEECeEEEEecCHHHhcC--
Confidence 4789999999999999998899999999999764321 1688999986 5899999999999997543322
Q ss_pred eEEEEEEEECCcc--CCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 83 LFIAFDLYSEGVI--YGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 83 ~~L~~eV~d~~~~--~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
..|.|.|++.+.+ ++|++||++.|+|++|..+. ....||.|
T Consensus 84 ~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~---~~~~W~~L 126 (127)
T cd04030 84 RTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK---GFTQWYDL 126 (127)
T ss_pred CEEEEEEEECCcccCCCCceEEEEEEecccccccC---CccceEEC
Confidence 4899999999875 57999999999999986542 23567765
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-18 Score=144.65 Aligned_cols=128 Identities=18% Similarity=0.214 Sum_probs=96.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhc-cccceEEeeecCCCCCCCee-ceEEEEEeccCccCCCc
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQ-TCLQRQKTPTDREGGGNPEW-NHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~-~~~~k~KTkV~~~gg~NPvW-NEtf~F~V~~~~~~~~~ 82 (281)
.+.|++++|+||+ .+.+|+.||||++.+.++..... ..+ --.+++||++++ ++.||+| ||+|.|.+...
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~-~~~~~~~~~~kT~v~~-~tlnP~W~nE~f~f~v~~~------ 72 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIF-PALPHHGQECRTSIVE-NTINPVWHREQFVFVGLPT------ 72 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccc-cccccccceeeeeeEc-CCCCCceEceEEEEEcCCC------
Confidence 4689999999998 67889999999999976421100 000 001478999986 5899999 99999999631
Q ss_pred eEEEEEEEECCccC---CCeeeEEEEEechhhhcccCCceEEEEEEEEcC--CCCcceEEEEEE
Q 040877 83 LFIAFDLYSEGVIY---GYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG--HGKPNGVLSFCY 141 (281)
Q Consensus 83 ~~L~~eV~d~~~~~---gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~--~GK~~G~L~Lsl 141 (281)
..|.|+|+|++..+ +|++||++.|+|.+|+.+........+|++.+. .++.+|+|.|.+
T Consensus 73 ~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 73 DVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred CEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 27999999976322 279999999999999988655556778887754 355789998865
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-18 Score=139.91 Aligned_cols=121 Identities=18% Similarity=0.228 Sum_probs=95.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|++|+..+..++.||||+|.+.+... ...||++++ ++.||+|||+|.|.+.... ...
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~----------~~~kT~~~~-~t~~P~Wne~f~f~i~~~~----~~~ 66 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKR----------RIAKTRTIY-DTLNPRWDEEFELEVPAGE----PLW 66 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCe----------eeecccEec-CCCCCcccceEEEEcCCCC----CCE
Confidence 5899999999999998889999999998754311 467999976 4799999999999998632 138
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
|.|+|+|.+.++++++||++.++|.++..+.++.....|+.|. .+|.|++.+.+..
T Consensus 67 L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~-----~~g~i~l~~~~~~ 122 (126)
T cd04043 67 ISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD-----TQGRLLLRVSMEG 122 (126)
T ss_pred EEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC-----CCCeEEEEEEEee
Confidence 9999999998778999999999999876543233456788773 2678888776643
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.2e-19 Score=144.21 Aligned_cols=108 Identities=18% Similarity=0.177 Sum_probs=86.5
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||...+ .+..||||+|.+.++..+. .++||++.+ ++.||+|||+|.|.+..... +
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~--------~~~kT~v~~-~t~~P~~nE~F~f~v~~~~~-~-- 77 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVR--------FRQKTSTVP-DSANPLFHETFSFDVNERDY-Q-- 77 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCc--------ceEeCcccc-CCCCCccccEEEEEcChHHh-C--
Confidence 478999999999999888 7889999999998764321 577999976 58999999999999975433 1
Q ss_pred eEEEEEEEECCccC-CCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 83 LFIAFDLYSEGVIY-GYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 83 ~~L~~eV~d~~~~~-gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
..|.|+||+.+... ++++||++.|+|.++..+. ....||.|
T Consensus 78 ~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~---~~~~Wy~l 119 (119)
T cd08685 78 KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQK---EISGWYYL 119 (119)
T ss_pred CEEEEEEECCCCCcCCCEEEEEEEecHHHhccCc---cccceEeC
Confidence 26889999988764 4789999999999998542 23566654
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.3e-19 Score=141.03 Aligned_cols=106 Identities=15% Similarity=0.192 Sum_probs=86.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|+||+ .+..||||+|++.+ +++||++++ ++.||+|||+|.|.+......-....
T Consensus 5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~~-------------~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~l~~~~ 66 (111)
T cd04011 5 QVRVRVIEARQLV----GGNIDPVVKVEVGG-------------QKKYTSVKK-GTNCPFYNEYFFFNFHESPDELFDKI 66 (111)
T ss_pred EEEEEEEEcccCC----CCCCCCEEEEEECC-------------EeeeeeEEe-ccCCCccccEEEEecCCCHHHHhcCe
Confidence 6899999999999 47799999999975 577899865 58999999999999864221101248
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
|.|+|+|.+.+++|++||++.++|.++..+.....-..||+|.+
T Consensus 67 l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 67 IKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred EEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 99999999988889999999999999988754445567888865
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.3e-19 Score=141.64 Aligned_cols=107 Identities=17% Similarity=0.190 Sum_probs=88.0
Q ss_pred EEEEEEeecCCCCCCC-CCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCee-ceEEEEEeccCccCCCce
Q 040877 6 LELKVNSCSDLKAFNL-FNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEW-NHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 6 LeVtViSAkdLk~~~~-~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvW-NEtf~F~V~~~~~~~~~~ 83 (281)
|+|+|++|++|+..+. .+..||||+|.+.+ ++.||++++ ++.||+| ||+|.|.+....+.. .
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-------------~~~kT~v~~-~~~nP~W~ne~f~f~i~~~~l~~--~ 64 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-------------TTYKTDVVK-KSLNPVWNSEWFRFEVDDEELQD--E 64 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC-------------eeEecceec-CCCCCcccCcEEEEEcChHHcCC--C
Confidence 6899999999998874 68899999999964 478999986 5899999 999999998543222 3
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
.|.|+|+|.+.+++|++||++.++|.+|.....+.....||.|.+
T Consensus 65 ~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 65 PLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred eEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 899999999988889999999999999998422233567887754
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-18 Score=141.31 Aligned_cols=118 Identities=19% Similarity=0.318 Sum_probs=96.0
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
..|+|+|++|+ |...+.++++||||+|.+.+. .+.||++++ ++.||+|||+|.|.+... .
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~------------~~~kT~v~~-~t~~P~Wne~f~~~~~~~------~ 61 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ------------PPKKTEVSK-KTSNPKWNEHFTVLVTPQ------S 61 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc------------ccEEeeeeC-CCCCCccccEEEEEeCCC------C
Confidence 36999999999 554555889999999999652 377999976 689999999999998632 3
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcccCCce--EEEEEEEEcCC---CCcceEEEEEE
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAV--RFVRYQIRTGH---GKPNGVLSFCY 141 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~--~~vsy~L~~~~---GK~~G~L~Lsl 141 (281)
.|.|+|+|++.+++|++||++.++|.+++....+.. ..+++++.+.+ |+.+|.|++.+
T Consensus 62 ~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 62 TLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 799999999988889999999999999998765433 34688887543 57899999865
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.4e-19 Score=138.92 Aligned_cols=102 Identities=17% Similarity=0.265 Sum_probs=86.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|.|+|++|+||+..+..+.+||||+|.+.+ +++||++++ ++.||+|||+|.|.+..... ..
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-------------~~~kT~v~~-~t~nP~Wne~f~f~v~~~~~----~~ 62 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK-------------TTQKSKVKE-RTNNPVWEEGFTFLVRNPEN----QE 62 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECC-------------EEEeCcccc-CCCCCcccceEEEEeCCCCC----CE
Confidence 3899999999999988889999999999975 578899976 68999999999999986321 37
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
|.|+|+|++. |++||.+.|+|.+|.... +.....||+|..
T Consensus 63 l~v~v~d~~~---~~~iG~~~i~l~~l~~~~-~~~~~~w~~L~~ 102 (105)
T cd04050 63 LEIEVKDDKT---GKSLGSLTLPLSELLKEP-DLTLDQPFPLDN 102 (105)
T ss_pred EEEEEEECCC---CCccEEEEEEHHHhhccc-cceeeeeEecCC
Confidence 9999999884 899999999999999764 334567888853
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.79 E-value=8e-19 Score=140.81 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=83.1
Q ss_pred eEEEEEEEeecCCCCCCCC-CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 4 STLELKVNSCSDLKAFNLF-NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~-gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
|.|+|+|++|++|...+.+ ++.||||+|.+.+... .+.||++++ ++.||+|||+|.|.+....+. ..
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~----------~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~-~~ 68 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGK----------PLYSTRIIR-KDLNPVWEETWFVLVTPDEVK-AG 68 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCC----------ccEeeeeEC-CCCCCccceeEEEEeCchhcc-CC
Confidence 6899999999999998887 8999999999965421 467999987 589999999999988643211 12
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDE 114 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g 114 (281)
..|.|+|+|++.+++|++||++.++|.+|++.
T Consensus 69 ~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 69 ERLSCRLWDSDRFTADDRLGRVEIDLKELIED 100 (111)
T ss_pred CEEEEEEEeCCCCCCCCcceEEEEEHHHHhcC
Confidence 48999999999888899999999999999853
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.7e-19 Score=145.71 Aligned_cols=101 Identities=18% Similarity=0.188 Sum_probs=85.5
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+..+..+..||||+|.+.++..+. ..++||++.+ ++.||+|||+|.|+|....+.+
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~-------~~~~kT~v~~-~t~nPvfnE~F~f~v~~~~L~~-- 82 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSST-------SCLFRTKALE-DQDKPVFNEVFRVPISSTKLYQ-- 82 (124)
T ss_pred CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCC-------CceEEcCccC-CCCCCccccEEEEECCHHHhhc--
Confidence 47899999999999988777889999999998864321 1478999976 5999999999999998655433
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLID 113 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~ 113 (281)
..|+|.|++.+.++++++||++.|+|+++-.
T Consensus 83 ~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~ 113 (124)
T cd08680 83 KTLQVDVCSVGPDQQEECLGGAQISLADFES 113 (124)
T ss_pred CEEEEEEEeCCCCCceeEEEEEEEEhhhccC
Confidence 5999999999988889999999999999844
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=148.89 Aligned_cols=112 Identities=22% Similarity=0.377 Sum_probs=87.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEecc---------
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKA--------- 75 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~--------- 75 (281)
+|.|+|++|+||.. ..|..||||+|.+.+...+. +++||++++ ++.||+|||+|.|.+..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~--------~~~kT~v~~-~t~nP~wNE~F~F~v~~~~~~~~~~~ 69 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQ--------DTKRTKVKK-KTNNPQFDEAFYFDVTIDSSPEKKQF 69 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccC--------cccCCccEe-CCCCCccceEEEEEEecccccccccc
Confidence 58999999999998 45889999999998753221 577999976 59999999999999951
Q ss_pred --CccCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC
Q 040877 76 --FVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG 129 (281)
Q Consensus 76 --~~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~ 129 (281)
.....+...|.|+||+++.+.+|++||++.|+|.++..+. .....||+|...
T Consensus 70 ~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~--~~~~~W~~L~~~ 123 (148)
T cd04010 70 EMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQA--GSHQAWYFLQPR 123 (148)
T ss_pred cCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccC--CcCcceeecCCc
Confidence 1111123589999999998778999999999999988752 123678888654
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=140.71 Aligned_cols=110 Identities=18% Similarity=0.288 Sum_probs=88.7
Q ss_pred ceEEEEEEEeecCCCCCC-CCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFN-LFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~-~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
.+.|+|+|++|+||+..+ ..+..||||+|.+.++... ..+.||++.+ ++.||+|||+|.|.+....+..
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~--------~~~~kT~v~~-~t~~P~wne~f~f~i~~~~l~~- 82 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSK--------QSKRKTSVKK-NTTNPVFNETLKYHISKSQLET- 82 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCc--------CceeeccccC-CCCCCcccceEEEeCCHHHhCC-
Confidence 478999999999999888 6789999999999754321 1478999965 6999999999999998543322
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
..|.|+|+|.+.++++++||++.++|.++..+. ....||.|
T Consensus 83 -~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~---~~~~w~~l 123 (123)
T cd08521 83 -RTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDS---QQSEWYPL 123 (123)
T ss_pred -CEEEEEEEeCCCCcCCceeeEEEEecccccccC---CCccEEEC
Confidence 489999999998888999999999999996442 23567764
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=141.63 Aligned_cols=109 Identities=16% Similarity=0.189 Sum_probs=89.9
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|.|+|++|+||...+..+..||||+|.+..+.. +++||++.+ ++.||+|||+|.|.+....+. .
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~----------~~~kT~v~~-~t~~P~wne~f~f~v~~~~l~--~ 81 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRS----------NTKQSKIHK-KTLNPEFDESFVFEVPPQELP--K 81 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCC----------CcEeCceEc-CCCCCCcccEEEEeCCHHHhC--C
Confidence 468999999999999988889999999999964321 467999976 589999999999999854332 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEE
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIR 127 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~ 127 (281)
..|.|+|+|.+.+++|++||++.|+|+++..+. ....||.|.
T Consensus 82 ~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~---~~~~W~~l~ 123 (124)
T cd08387 82 RTLEVLLYDFDQFSRDECIGVVELPLAEVDLSE---KLDLWRKIQ 123 (124)
T ss_pred CEEEEEEEECCCCCCCceeEEEEEecccccCCC---CcceEEECc
Confidence 489999999998888999999999999998653 235677764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=142.34 Aligned_cols=110 Identities=22% Similarity=0.224 Sum_probs=86.2
Q ss_pred ceEEEEEEEeecCCCCCCCC-CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEE-EeccCccCC
Q 040877 3 WSTLELKVNSCSDLKAFNLF-NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKF-DIKAFVDNC 80 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~-gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F-~V~~~~~~~ 80 (281)
.++|+|+|++|+||+..+.. +..||||+|.+.++.. ++.||++++ ++.||+|||+|.| .+......
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~----------~~~kT~v~~-~t~nP~wnE~F~f~~~~~~~~~- 82 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKE----------HKVKTRVLR-KTRNPVYDETFTFYGIPYNQLQ- 82 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcC----------ceeeccEEc-CCCCCceeeEEEEcccCHHHhC-
Confidence 46899999999999988876 8899999999975421 577999976 5899999999999 45532222
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
...|.|+|+|++.+++|++||++.|+|+++.-..++ ...+|.++
T Consensus 83 -~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~-~~~~~~~~ 126 (128)
T cd08388 83 -DLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEG-ELLVSREI 126 (128)
T ss_pred -CCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCc-eEEEEEec
Confidence 247999999999888899999999999998654322 23455543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=143.03 Aligned_cols=107 Identities=25% Similarity=0.266 Sum_probs=87.6
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEE-eccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFD-IKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~-V~~~~~~~~ 81 (281)
.++|+|+||+|+||...+..+..|+||++.+.++.. +++||++++ + .||+|||+|.|. +....+.
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~----------~~~kTkv~~-~-~nP~fnE~F~f~~i~~~~l~-- 80 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKK----------QRAKTKVQR-G-PNPVFNETFTFSRVEPEELN-- 80 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCc----------ceeeccccc-C-CCCcccCEEEECCCCHHHhc--
Confidence 468999999999999988778899999998876521 578999975 4 899999999998 6644332
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
...|+|+|++.+.++++++||++.|+|+++..+. ....||.|
T Consensus 81 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~---~~~~w~~L 122 (124)
T cd08389 81 NMALRFRLYGVERMRKERLIGEKVVPLSQLNLEG---ETTVWLTL 122 (124)
T ss_pred cCEEEEEEEECCCcccCceEEEEEEeccccCCCC---CceEEEeC
Confidence 3589999999998888999999999999996542 34567765
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-18 Score=146.30 Aligned_cols=110 Identities=17% Similarity=0.170 Sum_probs=88.4
Q ss_pred ceEEEEEEEeecCCCCCC-CCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFN-LFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~-~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
.+.|+|+|++|+||...+ ..+..||||++.+.++..+ ..++||++++ ++.||+|||+|.|.+. +.
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~--------~~k~KT~v~k-ktlnPvfNE~F~f~v~---l~-- 93 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKC--------IAKKKTKIAR-KTLDPLYQQQLVFDVS---PT-- 93 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCcc--------ccceeceecC-CCCCCccCCeEEEEEc---CC--
Confidence 478999999999998764 4678999999999876321 2588999986 6999999999999998 22
Q ss_pred ceEEEEEEE-ECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC
Q 040877 82 HLFIAFDLY-SEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG 129 (281)
Q Consensus 82 ~~~L~~eV~-d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~ 129 (281)
...|.|+|| +.+.+.++++||++.|+|+++..+. ....||.|...
T Consensus 94 ~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~---~~~~Wy~L~~~ 139 (146)
T cd04028 94 GKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSN---LVIGWYKLFPT 139 (146)
T ss_pred CCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCC---CceeEEecCCc
Confidence 248999999 5666778999999999999985432 24678888753
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-18 Score=140.44 Aligned_cols=105 Identities=20% Similarity=0.270 Sum_probs=89.3
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
|.|+|+|++|+||++.+.++++||||+|++.+. .+.+|++.+ ++.||+|||+|.|.+.... .
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~------------~~~kT~~~~-~t~~P~Wne~f~~~v~~~~-----~ 62 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGI------------VKGRTVTIS-NTLNPVWDEVLYVPVTSPN-----Q 62 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCE------------EeeceeEEC-CCcCCccCceEEEEecCCC-----C
Confidence 579999999999999998899999999999652 467888865 6899999999999987532 3
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCC
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGH 130 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~ 130 (281)
.|.|+|+|++.++.|++||++.++|.+++.+. ...||.+.+.+
T Consensus 63 ~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~~----~~~~~~~~~~~ 105 (120)
T cd04045 63 KITLEVMDYEKVGKDRSLGSVEINVSDLIKKN----EDGKYVEYDDE 105 (120)
T ss_pred EEEEEEEECCCCCCCCeeeEEEEeHHHhhCCC----CCceEEecCCC
Confidence 79999999998888999999999999999862 35678877643
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-18 Score=139.32 Aligned_cols=113 Identities=18% Similarity=0.228 Sum_probs=91.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|++|+..+.+++.||||+|.+.+ ++.||++++ ++.||+|||+|.|.+.... ..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-------------~~~kT~~v~-~t~~P~Wne~f~f~~~~~~-----~~ 62 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK-------------TKKRTKTIP-QNLNPVWNEKFHFECHNSS-----DR 62 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC-------------Eeeecceec-CCCCCccceEEEEEecCCC-----CE
Confidence 6999999999999999889999999999853 467899876 5899999999999986431 27
Q ss_pred EEEEEEECCcc-----------CCCeeeEEEEEechhhhcccCCceEEEEEEEEcCC--CCcceEEEEEE
Q 040877 85 IAFDLYSEGVI-----------YGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGH--GKPNGVLSFCY 141 (281)
Q Consensus 85 L~~eV~d~~~~-----------~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~--GK~~G~L~Lsl 141 (281)
|.|+|+|++.. ++|++||.+.++|.++... ...||.|...+ ++.+|.|.|++
T Consensus 63 l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~~-----~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 63 IKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGE-----MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred EEEEEEECCCCcccccceeccccCCCcceEEEEEhHHccCC-----CCeEEECccCCCCCcEeEEEEEEC
Confidence 99999998742 3689999999999987533 24678877543 45899999864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-18 Score=138.79 Aligned_cols=109 Identities=18% Similarity=0.185 Sum_probs=86.0
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccC-ccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAF-VDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~-~~~~~ 81 (281)
.+.|.|+|++|+||+..+..+..||||+|.+.++..+. .++||++++ ++.||+|||+|.|.+... .+.
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~--------~~~kT~v~~-~t~nP~wne~f~f~~~~~~~l~-- 83 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEK--------SKRRTKTVK-KTLNPEWNQTFEYSNVRRETLK-- 83 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCcc--------ccccccccC-CCCCCccccEEEEcccCHHHhC--
Confidence 47899999999999998888999999999997643211 577999976 589999999999996432 222
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
...|.|+|+|.+.+.+|++||++.++|++.... + ...||.|
T Consensus 84 ~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~--~--~~~W~~L 124 (125)
T cd04031 84 ERTLEVTVWDYDRDGENDFLGEVVIDLADALLD--D--EPHWYPL 124 (125)
T ss_pred CCEEEEEEEeCCCCCCCcEeeEEEEeccccccc--C--CcceEEC
Confidence 248999999999888899999999999983322 1 2356665
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.9e-18 Score=137.70 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=86.5
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccC-ccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAF-VDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~-~~~~~ 81 (281)
.++|+|+|++|+||+..+..++.||||+|.+.++.. ++.||++.+ ++.||+|||+|.|.+... ....
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~----------~~~kT~v~~-~t~~P~Wne~f~f~~~~~~~l~~- 82 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKK----------HKLETKVKR-KNLNPHWNETFLFEGFPYEKLQQ- 82 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCC----------cceeeeeec-CCCCCccceeEEEcccCHHHhCC-
Confidence 468999999999999988889999999999954321 567999976 589999999999985322 1212
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
..|.|+|+|++.++++++||++.++|+++..+. ....||.|
T Consensus 83 -~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~---~~~~W~~l 123 (125)
T cd08386 83 -RVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTE---EQTFWKDL 123 (125)
T ss_pred -CEEEEEEEeCCCCcCCcEeeEEEEecccccCCC---CcceEEec
Confidence 379999999998888999999999999987643 23556655
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-18 Score=143.45 Aligned_cols=97 Identities=20% Similarity=0.181 Sum_probs=82.3
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.++|+|+|++|+||...+..+..||||+|.+.++..+ ..++||+|.+ ++.||+|||+|.|.|....+. .
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~--------~~k~kT~v~k-~t~nP~~nE~f~F~v~~~~l~--~ 82 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRK--------ISKKKTSVKR-DDTNPIFNEAMIFSVPAIVLQ--D 82 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCcc--------ccccCCcccc-CCCCCeeceeEEEECCHHHhC--C
Confidence 3689999999999998887889999999999875332 2577899976 589999999999999864442 3
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechh
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKD 110 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~d 110 (281)
..|+|+|+|.+.++++++||++.|....
T Consensus 83 ~~l~~~V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 83 LSLRVTVAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred cEEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence 6999999999988899999999998764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.8e-18 Score=140.50 Aligned_cols=106 Identities=12% Similarity=0.165 Sum_probs=85.4
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|++|+..+.+++.||||+|.+.+....+ ...++||++++ ++.||+|||+|.|.+.........
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~------~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~~~~~~ 87 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFP------DVPTPKTQVKK-KTLFPLFDESFEFNVPPEQCSVEG 87 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCc------cccccccccCc-CCCCCccCCEEEEEechhhcccCC
Confidence 36899999999999998888999999999997542100 01578999976 589999999999999753211112
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhccc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF 115 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~ 115 (281)
..|.|+|||.+.+++|++||++.++|++|....
T Consensus 88 ~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~ 120 (133)
T cd04009 88 ALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVE 120 (133)
T ss_pred CEEEEEEEecCCCCCCcEeEEEEEeHHHCCccc
Confidence 589999999998878999999999999998644
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=134.66 Aligned_cols=108 Identities=17% Similarity=0.180 Sum_probs=87.4
Q ss_pred ceEEEEEEEeecCCCCCC-CCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFN-LFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~-~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
.+.|+|+|++|+||+..+ .++..||||+|.+.++.. ++.||++.+ ++.||+|||+|.|.+....+.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~----------~~~~T~v~~-~~~~P~wne~f~f~i~~~~l~-- 79 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDER----------RSLQSKVKR-KTQNPNFDETFVFQVSFKELQ-- 79 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCC----------CceEeeeEc-CCCCCccceEEEEEcCHHHhc--
Confidence 468999999999999988 678999999999965421 467898875 599999999999999754332
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
...|.|+|++.+.++++++||++.++|.++..... ...|++|
T Consensus 80 ~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~---~~~w~~L 121 (123)
T cd08390 80 RRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKG---GVVWRDL 121 (123)
T ss_pred ccEEEEEEEECCcCCCCcEEEEEEEeccceecCCC---ceEEEeC
Confidence 24899999999987789999999999999887532 2466655
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=8e-18 Score=138.25 Aligned_cols=114 Identities=16% Similarity=0.154 Sum_probs=89.1
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|.|+|++|+||...+..+..||||+|.+.++..+. .+.||++++ ++.||+|||+|.|.+...... .
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~--------~~~kT~v~~-~t~nP~wne~f~f~~~~~~l~--~ 80 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKK--------SKHKTQVKK-KTLNPEFNEEFFYDIKHSDLA--K 80 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCcc--------CCceeeeEe-ccCCCCcccEEEEECCHHHhC--C
Confidence 47899999999999999888999999999998653221 577999976 699999999999999754332 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCC
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGK 132 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK 132 (281)
..|.|+|+|.+.+++|++||++.|++.+. + .....||.+++..++
T Consensus 81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~--~---~~~~~W~~~l~~~~~ 125 (133)
T cd08384 81 KTLEITVWDKDIGKSNDYIGGLQLGINAK--G---ERLRHWLDCLKNPDK 125 (133)
T ss_pred CEEEEEEEeCCCCCCccEEEEEEEecCCC--C---chHHHHHHHHhCCCC
Confidence 48999999999877899999999999752 2 123446666544344
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-18 Score=142.40 Aligned_cols=97 Identities=18% Similarity=0.262 Sum_probs=81.4
Q ss_pred ceEEEEEEEeecCCCCCCC--CCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCC
Q 040877 3 WSTLELKVNSCSDLKAFNL--FNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNC 80 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~--~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~ 80 (281)
.++|.|+|++|+||+..+. .+..||||+|.+..+..+ +.|+||++.+ ++.||+|||+|.|+|+...+.
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k--------~~kkkT~v~k-~t~nPvfNE~f~F~v~~~~L~- 83 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAK--------LKKKQTKRAK-HKINPVWNEMIMFELPSELLA- 83 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcc--------cceeccceee-CCCCCccccEEEEECCHHHhC-
Confidence 4789999999999998873 345899999999875322 3688999975 699999999999999865442
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEechh
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVPLKD 110 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~VpL~d 110 (281)
...|.|+|+|.+.+++|++||++.+++..
T Consensus 84 -~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 84 -ASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred -ccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 35899999999998899999999999964
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-17 Score=138.84 Aligned_cols=91 Identities=19% Similarity=0.360 Sum_probs=81.1
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
|.|+|+|++|++|+..+. ++.||||+|.+.+ ++.||++.+ ++.||+|||+|.|.+.+.. .
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~-------------~~~kT~vvk-~t~nP~WnE~f~f~i~~~~-----~ 61 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN-------------QKVKTRVIK-KNLNPVWNEELTLSVPNPM-----A 61 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECC-------------EEEEeeeEc-CCCCCeecccEEEEecCCC-----C
Confidence 789999999999998886 8899999999954 588999986 5899999999999998542 3
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcc
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDE 114 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g 114 (281)
.|.|+|||++.+++|++||++.++|.+|+..
T Consensus 62 ~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 62 PLKLEVFDKDTFSKDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEECCCCCCCCEEEEEEEEHHHhhhh
Confidence 7999999999988899999999999998864
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-18 Score=140.53 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=90.9
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|.|+|++|+||+..+.++..||||+|.+.++..+ ..+.||++.+ ++.||+|||+|.|.+..... ..
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~--------~~~~kT~v~k-~t~nP~w~e~F~f~v~~~~~--~~ 82 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKR--------ISKKKTHVKK-CTLNPVFNESFVFDIPSEEL--ED 82 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCce--------eeeEcCcccc-CCCCCccCceEEEECCHHHh--CC
Confidence 4689999999999999998899999999999764221 2477899875 68999999999999975433 22
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcce
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNG 135 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G 135 (281)
..|.|+|+|.+.++++++||++.+++.+. +.. ...|+.+.+..|++.+
T Consensus 83 ~~l~~~v~d~d~~~~~~~iG~~~~~~~~~--~~~---~~~w~~l~~~~~~~i~ 130 (136)
T cd08404 83 ISVEFLVLDSDRVTKNEVIGRLVLGPKAS--GSG---GHHWKEVCNPPRRQIA 130 (136)
T ss_pred CEEEEEEEECCCCCCCccEEEEEECCcCC--Cch---HHHHHHHHhCCCCeee
Confidence 58999999999888899999999999982 211 2345555554566544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=137.26 Aligned_cols=98 Identities=19% Similarity=0.252 Sum_probs=81.0
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 2 EWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 2 e~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
..++|+|+|++|++|++.+.+++.||||+|.+.+++.+ ..++||++.+ ++.||+|||+|.|.+......
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~--------~~~~kT~v~~-~t~nP~wne~f~f~i~~~~~~-- 80 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRR--------LKKKKTSVKK-NTLNPTYNEALVFDVPPENVD-- 80 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcc--------cceecCCccc-CCCCCcccceEEEECCHHHhC--
Confidence 35789999999999999999999999999999754221 1477899864 699999999999998743221
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechh
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKD 110 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~d 110 (281)
...|.|+|+|++.+++|++||++.|++..
T Consensus 81 ~~~l~~~v~d~~~~~~~~~IG~~~l~~~~ 109 (134)
T cd08403 81 NVSLIIAVVDYDRVGHNELIGVCRVGPNA 109 (134)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEECCCC
Confidence 24799999999988889999999999873
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-18 Score=138.90 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=90.6
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 2 EWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 2 e~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
+.++|+|+|++|+||+..+..+..||||+|.+.+...+ ..++||++.+ ++.||.|||+|.|.+....+.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~--------~~~~~T~~~~-~~~~P~wne~f~f~i~~~~l~-- 80 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKK--------LKKKKTSVKK-GTLNPVFNEAFSFDVPAEQLE-- 80 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeE--------eeeecCccee-cCCCCeeeeeEEEECCHHHhC--
Confidence 45799999999999999888899999999999865321 1467999876 689999999999999854321
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCC
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGK 132 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK 132 (281)
...|.|+|+|.+.++++++||.+.++|.+ .+. ....|+.|.+..++
T Consensus 81 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~---~~~~W~~l~~~~~~ 126 (134)
T cd00276 81 EVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGE---ELEHWNEMLASPRK 126 (134)
T ss_pred CcEEEEEEEecCCCCCCceeEEEEECCCC--CCc---HHHHHHHHHhCCCC
Confidence 24899999999987889999999999999 222 12346666655454
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-17 Score=138.57 Aligned_cols=101 Identities=20% Similarity=0.286 Sum_probs=82.0
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
++.|.|+|++||+|.+.+. .||||+|.+++ +|.||++.+ +.||+|||+|.|.+....
T Consensus 1 m~~L~V~Vv~Ar~L~~~~~---~dPYV~Ik~g~-------------~k~kT~v~~--~~nP~WnE~F~F~~~~~~----- 57 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPDK---FNTYVTLKVQN-------------VKSTTIAVR--GSQPCWEQDFMFEINRLD----- 57 (127)
T ss_pred CceEEEEEEEeeCCCCCCC---CCCeEEEEECC-------------EEeEeeECC--CCCCceeeEEEEEEcCCC-----
Confidence 3589999999999987653 48999999955 588999975 369999999999997532
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
..|.|+|+|++. ..|++||.+.|+|.++..+.. .....||+|.-
T Consensus 58 ~~L~v~V~dkd~-~~DD~lG~v~i~L~~v~~~~~-~~~~~Wy~L~~ 101 (127)
T cd08394 58 LGLVIELWNKGL-IWDTLVGTVWIPLSTIRQSNE-EGPGEWLTLDS 101 (127)
T ss_pred CEEEEEEEeCCC-cCCCceEEEEEEhHHcccCCC-CCCCccEecCh
Confidence 259999999985 599999999999999997632 23356888763
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=142.43 Aligned_cols=94 Identities=21% Similarity=0.238 Sum_probs=79.3
Q ss_pred EEEEEEEeecCCCCCCCCC--------------CCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEE
Q 040877 5 TLELKVNSCSDLKAFNLFN--------------RLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMK 70 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~g--------------k~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~ 70 (281)
+|+|+|++|+||+..+..+ .+||||+|.+.+ ++.||++++ ++.||+|||+|.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g-------------~~~kT~v~~-~t~nPvWNE~f~ 66 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG-------------QKVKTSVKK-NSYNPEWNEQIV 66 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC-------------EeeecceEc-CCCCCCcceEEE
Confidence 4899999999999877443 689999999976 467999986 589999999999
Q ss_pred EEeccCccCCCceEEEEEEEECCccCCCeeeEEEEEechhhhccc
Q 040877 71 FDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF 115 (281)
Q Consensus 71 F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~ 115 (281)
|.+..... . ..|.|+|+|++.+++|++||.+.++|.++....
T Consensus 67 f~v~~p~~-~--~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 67 FPEMFPPL-C--ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEeeCCCc-C--CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 99764322 1 379999999998889999999999999998753
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-17 Score=130.39 Aligned_cols=115 Identities=18% Similarity=0.148 Sum_probs=84.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|+||+.. +.+||||+|.+.+. .+.||++.+ + .||+|||+|.|.+..... ....
T Consensus 1 ~L~v~vi~a~~l~~~---~~~dpyv~v~~~~~------------~~~kT~~~~-~-~~P~Wne~f~f~v~~~~~--~~~~ 61 (117)
T cd08383 1 SLRLRILEAKNLPSK---GTRDPYCTVSLDQV------------EVARTKTVE-K-LNPFWGEEFVFDDPPPDV--TFFT 61 (117)
T ss_pred CeEEEEEEecCCCcC---CCCCceEEEEECCE------------EeEecceEE-C-CCCcccceEEEecCCccc--cEEE
Confidence 389999999999976 78999999999652 357899875 4 999999999999985432 2257
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCC--CCcceEEEEEEEE
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGH--GKPNGVLSFCYKL 143 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~--GK~~G~L~Lsl~f 143 (281)
|.|.+++.+...++..+|. ++|.++..+. ....||+|...+ ++..|+|+|.++|
T Consensus 62 l~i~v~d~~~~~~~~~~g~--v~l~~~~~~~---~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 62 LSFYNKDKRSKDRDIVIGK--VALSKLDLGQ---GKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEEecccCCCeeEEEE--EEecCcCCCC---cceeEEECccCCCCCCcCceEEEEEEC
Confidence 8888888875544555555 5555544432 245788886433 4578999999876
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-17 Score=136.91 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=81.4
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.++|+|+|++|+||+..+..++.||||+|.+.++..+ ..++||++.+ ++.||+|||+|.|.+....+. .
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~--------~~~~kT~v~~-~t~nP~wne~f~f~i~~~~l~--~ 82 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKR--------LKKKKTTIKK-RTLNPYYNESFSFEVPFEQIQ--K 82 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcc--------cceeecccee-CCCCCcccceEEEECCHHHhC--C
Confidence 3789999999999999988899999999999754221 2467898864 699999999999999753321 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhh
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDL 111 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL 111 (281)
..|.|+|+|.+.+++|++||++.|++...
T Consensus 83 ~~l~~~v~d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 83 VHLIVTVLDYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred CEEEEEEEeCCCCCCCceeEEEEECCccC
Confidence 48999999999888899999999999764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-17 Score=137.98 Aligned_cols=98 Identities=17% Similarity=0.259 Sum_probs=81.3
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.++|+|+|++|+||...+ ++..||||+|.+.++..+ ..++||++.+ ++.||+|||+|.|.|....+. .
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~--------~~~~kT~v~~-~~~nP~fnE~F~f~i~~~~l~--~ 81 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKV--------VKTKKTEVVD-GAASPSFNESFSFKVTSRQLD--T 81 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEE--------eeeeecccEe-CCCCCcccceEEEECCHHHhC--c
Confidence 368999999999999888 888999999999875321 2477999865 699999999999999854443 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhh
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLI 112 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~ 112 (281)
..|.|+|++.+.++++++||++.|+...+.
T Consensus 82 ~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~ 111 (137)
T cd08409 82 ASLSLSVMQSGGVRKSKLLGRVVLGPFMYA 111 (137)
T ss_pred cEEEEEEEeCCCCCCcceEEEEEECCcccC
Confidence 589999999998888999999999965443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=137.19 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=81.2
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.++|+|+|++|+||+..+.+++.||||+|.+.....+ ..+.||++.+ ++.||+|||+|.|.+...... .
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~--------~~~~kT~v~~-~t~~P~wne~F~f~i~~~~~~--~ 82 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKR--------VEKKKTVIKK-RTLNPVFNESFIFNIPLERLR--E 82 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCc--------cccccCccee-CCCCCcccceEEEeCCHHHhC--C
Confidence 4789999999999999888899999999999643211 1467899976 689999999999998743221 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhh
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDL 111 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL 111 (281)
..|.|+|+|.+.+++|++||++.|++.+.
T Consensus 83 ~~l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 83 TTLIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence 48999999999888899999999999886
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-17 Score=136.95 Aligned_cols=96 Identities=16% Similarity=0.259 Sum_probs=78.7
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+..+.+++.||||+|.+.++.. ...++||++.+ ++.||+|||+|.|.+...... .
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~--------~~~~~kT~v~~-~t~nP~wnE~F~f~i~~~~l~--~ 81 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLK--------LIKTKKTSCMR-GTIDPFYNESFSFKVPQEELE--N 81 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCc--------ccceEcCcccc-CCCCCccceeEEEeCCHHHhC--C
Confidence 478999999999999999889999999999865321 12468899975 699999999999999643322 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEech
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLK 109 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~ 109 (281)
..|.|+|+|.+..++|++||++.|...
T Consensus 82 ~~l~~~V~d~d~~~~~~~iG~~~l~~~ 108 (135)
T cd08410 82 VSLVFTVYGHNVKSSNDFIGRIVIGQY 108 (135)
T ss_pred CEEEEEEEeCCCCCCCcEEEEEEEcCc
Confidence 479999999998888999999987653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-17 Score=137.29 Aligned_cols=93 Identities=18% Similarity=0.253 Sum_probs=78.1
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.++|+|+|++|++|+. +.+++.||||+|.+.+ ++.||++++ ++.||+|||+|.|.+..... .
T Consensus 27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~-------------~~~kT~vi~-~t~nPvWNE~F~f~~~~~~~---~ 88 (127)
T cd04032 27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG-------------QEKRTEVIW-NNNNPRWNATFDFGSVELSP---G 88 (127)
T ss_pred cEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC-------------ccccCceec-CCCCCcCCCEEEEecccCCC---C
Confidence 3789999999999984 6678999999999965 478999986 58999999999998543221 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLID 113 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~ 113 (281)
..|.|+|||++.+++|++||++.++|.....
T Consensus 89 ~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 89 GKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence 4899999999988899999999999986553
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-17 Score=169.55 Aligned_cols=123 Identities=17% Similarity=0.328 Sum_probs=101.6
Q ss_pred eEEEEEEEeecCCCCCCC------------------------------------------CCCCCeEEEEEEecCccchh
Q 040877 4 STLELKVNSCSDLKAFNL------------------------------------------FNRLSVYSVVSIINGELKKK 41 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~------------------------------------------~gk~DPYVvV~i~g~~~~~~ 41 (281)
|+|+|||.+|++|++.++ ++++||||+|.+.+.
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~----- 88 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQA----- 88 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCc-----
Confidence 789999999999986221 246799999999542
Q ss_pred hhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEE
Q 040877 42 EQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRF 121 (281)
Q Consensus 42 ~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~ 121 (281)
++.||+|++ ++.||+|||+|+|.+.... ..|.|+|+|++.+ ++++||++.|||.+|..|. ...
T Consensus 89 -------rv~RTrVi~-n~~NPvWNE~F~f~vah~~-----s~L~f~VkD~D~~-gaD~IG~a~IPL~~L~~Ge---~vd 151 (868)
T PLN03008 89 -------TLARTRVLK-NSQEPLWDEKFNISIAHPF-----AYLEFQVKDDDVF-GAQIIGTAKIPVRDIASGE---RIS 151 (868)
T ss_pred -------ceeeEEeCC-CCCCCCcceeEEEEecCCC-----ceEEEEEEcCCcc-CCceeEEEEEEHHHcCCCC---ceE
Confidence 466999985 5889999999999998642 3899999999976 6799999999999999874 357
Q ss_pred EEEEEEcCCCCc---ceEEEEEEEEeeeEE
Q 040877 122 VRYQIRTGHGKP---NGVLSFCYKLKGMTI 148 (281)
Q Consensus 122 vsy~L~~~~GK~---~G~L~Lsl~f~p~~~ 148 (281)
.|+.|.+.+||+ .|.|+|+++|.|++-
T Consensus 152 ~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~ 181 (868)
T PLN03008 152 GWFPVLGASGKPPKAETAIFIDMKFTPFDQ 181 (868)
T ss_pred EEEEccccCCCCCCCCcEEEEEEEEEEccc
Confidence 899999888763 479999999999643
|
|
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.5e-17 Score=138.12 Aligned_cols=129 Identities=19% Similarity=0.264 Sum_probs=96.8
Q ss_pred EEEEEEEeecCC--CCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCcc----
Q 040877 5 TLELKVNSCSDL--KAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVD---- 78 (281)
Q Consensus 5 ~LeVtViSAkdL--k~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~---- 78 (281)
.++|+|+.|+++ ......+..||||++++.-...+ .++.||++++ ++.||+|||+|.|.|.....
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~--------~~k~KT~v~k-~TlnPvfNE~f~f~I~~~~~~~~R 73 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEE--------PQSGKTSTIK-DTNSPEYNESFKLNINRKHRSFQR 73 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCC--------CceeecCccc-CCCCCcccceEEEEeccccchhhh
Confidence 568888888885 45555578999999997322111 1689999986 59999999999999964310
Q ss_pred CCCceEEEEEEEECCccC-CCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 79 NCNHLFIAFDLYSEGVIY-GYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 79 ~~~~~~L~~eV~d~~~~~-gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
...+..|.|+||+++.|+ +|++||++.|+|..|..+.. ...+++|.+......|.|++.+++..
T Consensus 74 ~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~---~~~~~~L~~~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 74 VFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCE---IHESVDLMDGRKATGGKLEVKVRLRE 138 (155)
T ss_pred hccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCc---ceEEEEhhhCCCCcCCEEEEEEEecC
Confidence 011247999999999764 69999999999999977542 24488887744456789999999864
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.7e-17 Score=131.51 Aligned_cols=101 Identities=22% Similarity=0.278 Sum_probs=82.8
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEE-eccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFD-IKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~-V~~~~~~~~ 81 (281)
.++|+|+|++|++|...+.+++.||||+|.+.++..+. .+.||++++ ++.||+|||+|.|. +......
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~--------~~~rT~v~~-~~~~P~Wne~f~f~~~~~~~~~-- 82 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKA--------TKLRTKTVH-KTRNPEFNETLTYYGITEEDIQ-- 82 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCC--------Cceeeeeec-CCCCCCccceEEEcCCCHHHhC--
Confidence 47899999999999998888999999999997653221 578999986 58999999999996 4322111
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhccc
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF 115 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~ 115 (281)
...|.|+|+|.+.+ ++++||++.++|++|..+.
T Consensus 83 ~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 83 RKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred CCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCc
Confidence 24899999999987 8999999999999998753
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-17 Score=136.70 Aligned_cols=99 Identities=19% Similarity=0.342 Sum_probs=82.6
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.++|.|+|++|+||+..+..+..||||+|.+.++..+ ++.++||++.+ ++.||+|||+|.|.|....+. .
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~-------~~~~~kT~v~~-~t~nPvfnEtF~f~i~~~~l~--~ 83 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQ-------EISKSKTSIRR-GQPDPEFKETFVFQVALFQLS--E 83 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCc-------ceeeccceeec-CCCCCcEeeeEEEECCHHHhC--c
Confidence 4789999999999999888889999999999764211 12467999976 689999999999999864432 3
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhh
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDL 111 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL 111 (281)
..|.|+|++.+.+.++++||++.+++...
T Consensus 84 ~~L~~~V~~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 84 VTLMFSVYNKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred cEEEEEEEECCCCCCCcEEEEEEECCcCC
Confidence 58999999999888999999999998754
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-17 Score=140.22 Aligned_cols=100 Identities=18% Similarity=0.231 Sum_probs=82.8
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccC-ccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAF-VDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~-~~~~~ 81 (281)
.+.|+|+|++|+||+..+..+..||||+|.+..+..+ ..++||++++ ++.||+|||+|.|.+... ...
T Consensus 26 ~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~--------~~~~kT~vi~-~t~nP~WnE~f~f~~~~~~~l~-- 94 (162)
T cd04020 26 TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSK--------KSKQKTPVVK-KSVNPVWNHTFVYDGVSPEDLS-- 94 (162)
T ss_pred CceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCC--------CcceeCCccC-CCCCCCCCCEEEEecCCHHHhC--
Confidence 4789999999999999988899999999999754321 1578999986 489999999999986422 221
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhc
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLID 113 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~ 113 (281)
...|.|+|||.+.+++|++||++.+.+.++..
T Consensus 95 ~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~ 126 (162)
T cd04020 95 QACLELTVWDHDKLSSNDFLGGVRLGLGTGKS 126 (162)
T ss_pred CCEEEEEEEeCCCCCCCceEEEEEEeCCcccc
Confidence 24899999999988889999999999999864
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-17 Score=137.15 Aligned_cols=98 Identities=18% Similarity=0.259 Sum_probs=81.2
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.++|.|+|++|+||+.....+..||||+|++.+++.+ +.|+||++.++...||+|||+|.|+|.... . .
T Consensus 13 ~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~--------~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~--~-~ 81 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGL--------LYKKKTRLVKSSNGQVKWGETMIFPVTQQE--H-G 81 (135)
T ss_pred CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCc--------ceeecCccEECCCCCceecceEEEeCCchh--h-e
Confidence 4789999999999998654566799999999987543 368999997753357999999999998642 2 3
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhh
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDL 111 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL 111 (281)
..|.|+|+|.+..++|++||.+.++..+.
T Consensus 82 v~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 82 IQFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 78999999999888999999999999763
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.4e-17 Score=130.36 Aligned_cols=104 Identities=18% Similarity=0.211 Sum_probs=84.5
Q ss_pred CCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCccCCCe
Q 040877 20 NLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYR 99 (281)
Q Consensus 20 ~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gDk 99 (281)
.+.|++||||+|.+.+. ...||++++ ++.||+|||+|.|.+.+.. ...|.|+|+|.+.+ +|+
T Consensus 8 ~~~G~~dPYv~v~v~~~------------~~~kT~v~~-~t~nP~Wne~f~f~v~~~~----~~~l~i~v~d~~~~-~d~ 69 (111)
T cd04052 8 SKTGLLSPYAELYLNGK------------LVYTTRVKK-KTNNPSWNASTEFLVTDRR----KSRVTVVVKDDRDR-HDP 69 (111)
T ss_pred ccCCCCCceEEEEECCE------------EEEEEeeec-cCCCCccCCceEEEecCcC----CCEEEEEEEECCCC-CCC
Confidence 45689999999999652 367899875 5899999999999997542 24799999999988 999
Q ss_pred eeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEeee
Q 040877 100 SIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKGM 146 (281)
Q Consensus 100 ~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p~ 146 (281)
+||++.|+|.+++.... ....||.|.. +.+|.|+|++.|.|+
T Consensus 70 ~iG~~~v~L~~l~~~~~--~~~~w~~L~~---~~~G~i~~~~~~~p~ 111 (111)
T cd04052 70 VLGSVSISLNDLIDATS--VGQQWFPLSG---NGQGRIRISALWKPV 111 (111)
T ss_pred eEEEEEecHHHHHhhhh--ccceeEECCC---CCCCEEEEEEEEecC
Confidence 99999999999986432 2356787743 678999999999883
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.7e-17 Score=131.76 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=91.2
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|.|+|++|++|+..+..+..||||+|.+.+.+.+. .++||++.+ ++.||.|||+|.|.+..... .
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~--------~~~rT~v~~-~~~~P~wne~f~~~~~~~~~---~ 79 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNE--------TKQKTKTIK-KTLNPVWNETFTFDLKPADK---D 79 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCC--------ceecceeec-CCCCCCccceEEEeCCchhc---C
Confidence 37899999999999988878899999999997643221 578999976 58999999999999875422 1
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG 129 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~ 129 (281)
..|.|+|+|.+.++++++||.+.++|+++... ....||.|.+.
T Consensus 80 ~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~----~~~~w~~L~~~ 122 (131)
T cd04026 80 RRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM----PVDGWYKLLNQ 122 (131)
T ss_pred CEEEEEEEECCCCCCcceeEEEEEeHHHhCcC----ccCceEECcCc
Confidence 37999999999877899999999999999854 24678888763
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.69 E-value=7e-16 Score=131.57 Aligned_cols=118 Identities=17% Similarity=0.222 Sum_probs=93.7
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
..|.|.|++|++|...+ ++||.|.+++. ...||++.. ++.||.|||.|.|...... .
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~------------~vaRT~v~~-~~~nP~W~E~F~f~~~~~~-----~ 67 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKT------------LYARTTSKL-KTDTLFWGEHFEFSNLPPV-----S 67 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCE------------EEEEEEEEc-CCCCCcceeeEEecCCCcc-----c
Confidence 57999999999998653 89999999873 357999975 5889999999999865432 3
Q ss_pred EEEEEEEECCc-c---CCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCc----------ceEEEEEEEEeeeE
Q 040877 84 FIAFDLYSEGV-I---YGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKP----------NGVLSFCYKLKGMT 147 (281)
Q Consensus 84 ~L~~eV~d~~~-~---~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~----------~G~L~Lsl~f~p~~ 147 (281)
.|.|.|+.++. . .++.+||.+.||+.++..+. ....||+|...++++ .+.|++.++|.++.
T Consensus 68 ~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~---~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 68 VITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQ---FVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred EEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCC---cccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 68888865442 2 26789999999999999653 457899999876553 26999999999853
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-16 Score=126.66 Aligned_cols=106 Identities=13% Similarity=0.222 Sum_probs=83.5
Q ss_pred EEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEE
Q 040877 9 KVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFD 88 (281)
Q Consensus 9 tViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~e 88 (281)
-.|+|++|.+.+.+++.||||+|.+.+....+ ...+.||++++ ++.||+|||+|.|.+.... ...|.|+
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~------~~~~~kT~vi~-~t~nP~wne~f~f~~~~~~----~~~l~~~ 73 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQ------WVEIGRTEVIK-NNLNPDFVTTFTVDYYFEE----VQKLRFE 73 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCc------eEEeccEeEeC-CCCCCCceEEEEEEEEeEe----eeEEEEE
Confidence 35999999999999999999999998753000 01368999986 5899999999999875321 2379999
Q ss_pred EEECCc----cCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 89 LYSEGV----IYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 89 V~d~~~----~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
|||.+. +++|++||++.+++.+|+.+.. ...++.|..
T Consensus 74 V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~---~~~~~~l~~ 114 (120)
T cd04048 74 VYDVDSKSKDLSDHDFLGEAECTLGEIVSSPG---QKLTLPLKG 114 (120)
T ss_pred EEEecCCcCCCCCCcEEEEEEEEHHHHhcCCC---cEEEEEccC
Confidence 999986 7789999999999999997642 356777743
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-16 Score=129.13 Aligned_cols=93 Identities=11% Similarity=0.115 Sum_probs=78.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|+||+..+.+++.||||+|.+.+.. .+.||++++ ++.||+|||+|.|.+.... ...
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~-----------~~~kT~~v~-~t~nP~Wne~f~f~~~~~~----~~~ 64 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKK-----------INDRDNYIP-NTLNPVFGKMFELEATLPG----NSI 64 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCee-----------ccceeeEEE-CCCCCccceEEEEEecCCC----CCE
Confidence 389999999999999989999999999996531 245777766 4999999999999986432 138
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhc
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLID 113 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~ 113 (281)
|.|+|+|.+.+++|++||++.++|++...
T Consensus 65 L~~~V~d~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 65 LKISVMDYDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred EEEEEEECCCCCCCceeEEEEEeeccccc
Confidence 99999999988889999999999998774
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-16 Score=131.34 Aligned_cols=110 Identities=17% Similarity=0.312 Sum_probs=87.5
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCcc-------
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVD------- 78 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~------- 78 (281)
|+|+|++|+||+.. ..++.||||+|.+.+. .+ ..++||++++ ++.||+|||+|.|.+.....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~-~~--------~~~~rT~vv~-~t~nP~Wne~f~f~~~~~~~~~~~~~~ 69 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYS-SK--------TDTKRTKVKK-KTNNPRFDEAFYFELTIGFSYEKKSFK 69 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecC-Cc--------CCeeccceee-CCCCCCcceEEEEEccccccccccccc
Confidence 68999999999988 7789999999999853 11 1578999986 48999999999999976411
Q ss_pred ----CCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC
Q 040877 79 ----NCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG 129 (281)
Q Consensus 79 ----~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~ 129 (281)
.-....|.|+|+|.+.++++++||++.|+|.++.... ....||.|...
T Consensus 70 ~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~---~~~~W~~L~~~ 121 (137)
T cd08675 70 VEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAG---SHQAWYFLQPR 121 (137)
T ss_pred cccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCC---cccceEecCCc
Confidence 0023589999999998778999999999999998542 24677877653
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.4e-16 Score=126.94 Aligned_cols=84 Identities=18% Similarity=0.271 Sum_probs=68.4
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEE
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFI 85 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L 85 (281)
|+|+|++|+||+ +..||||++.+++...+. .+.||++++ ++.||+|||+|.|.+.. ...|
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~--------~~~KTk~i~-~TlnPvWnE~F~i~l~~------s~~L 60 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFV--------KKAKTRVCR-DTTEPNWNEEFEIELEG------SQTL 60 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccc--------eeeeeeeec-CCCCCccceEEEEEeCC------CCEE
Confidence 689999999996 348999999997642211 478999986 59999999999999973 1389
Q ss_pred EEEEEEC-------CccCCCeeeEEEEEech
Q 040877 86 AFDLYSE-------GVIYGYRSIGKVHVPLK 109 (281)
Q Consensus 86 ~~eV~d~-------~~~~gDk~IG~v~VpL~ 109 (281)
+|.|||. +..+.|++||.+.|.|.
T Consensus 61 ~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 61 RILCYEKCYSKVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred EEEEEEcccccccccccCcccEEEEEEEEEC
Confidence 9999997 34567999988888884
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-16 Score=174.65 Aligned_cols=119 Identities=16% Similarity=0.310 Sum_probs=99.8
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
|.|.|+|++|+||+ +.++++||||+|.+++. .++||+|++ ++.||+|||+|+|.+.++.. ..
T Consensus 1980 G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~------------~~~kTkvvk-~~~nP~Wne~f~~~~~~p~~---~~ 2041 (2102)
T PLN03200 1980 GSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNG------------PPRQTKVVS-HSSSPEWKEGFTWAFDSPPK---GQ 2041 (2102)
T ss_pred cceEEEEeeccccc--cccCCCCCeEEEEECCC------------CcccccccC-CCCCCCcccceeeeecCCCC---CC
Confidence 89999999999998 55899999999999753 467999987 58999999999999886543 23
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceE---EEEEEEEee
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGV---LSFCYKLKG 145 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~---L~Lsl~f~p 145 (281)
.|+|+|||+|.| +++.+|.+.|+|.++..+. ....+|.|.+ +|++.|. |++.++|.+
T Consensus 2042 ~l~iev~d~d~f-~kd~~G~~~i~l~~vv~~~---~~~~~~~L~~-~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2042 KLHISCKSKNTF-GKSSLGKVTIQIDRVVMEG---TYSGEYSLNP-ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred ceEEEEEecCcc-CCCCCceEEEEHHHHhcCc---eeeeeeecCc-ccccCCCcceEEEEEEecC
Confidence 799999999987 6669999999999999753 3467888864 6777887 999998864
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-15 Score=150.12 Aligned_cols=121 Identities=17% Similarity=0.267 Sum_probs=96.2
Q ss_pred eEEEEEEEeecCCC-C----CCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCcc
Q 040877 4 STLELKVNSCSDLK-A----FNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVD 78 (281)
Q Consensus 4 g~LeVtViSAkdLk-~----~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~ 78 (281)
++|.|+||+|++|. + .+.....||||+|.|.|.+.|. .++||+| .+||.||+|||+|.|.|....
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~--------~~~kT~v-~nNg~nPvWne~F~F~i~~PE- 478 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDE--------KIMKTTV-KNNEWKPTWGEEFTFPLTYPD- 478 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCc--------ceeEEEe-CCCCcCceecceeEEEEEccC-
Confidence 57999999999874 1 1334568999999999987764 4667865 578999999999999997654
Q ss_pred CCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEE
Q 040877 79 NCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKL 143 (281)
Q Consensus 79 ~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f 143 (281)
.+.|+|+|+|+|...+|++||++++||.+|..|+ ...+|++.+|++---..|-++|
T Consensus 479 ---LAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy------R~VpL~~~~g~~l~~~~Ll~~f 534 (537)
T PLN02223 479 ---LALISFEVYDYEVSTADAFCGQTCLPVSELIEGI------RAVPLYDERGKACSSTMLLTRF 534 (537)
T ss_pred ---ceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc------eeEeccCCCcCCCCCceEEEEE
Confidence 3699999999997778999999999999999986 2458888888753334444444
|
|
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=130.14 Aligned_cols=103 Identities=19% Similarity=0.335 Sum_probs=78.7
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhh---------ccc-------cceEEeeecCCCCCCCee
Q 040877 2 EWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQR---------QTC-------LQRQKTPTDREGGGNPEW 65 (281)
Q Consensus 2 e~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~---------~~~-------~~k~KTkV~~~gg~NPvW 65 (281)
....|+|+|++|+||...+..|++||||+|.+.+.....+.++ ..+ ....||++++ ++.||+|
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~-~tlnP~W 104 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKP-QTLNPVW 104 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceec-CCCCCcc
Confidence 3478999999999999999899999999999964311000000 000 0247899875 5899999
Q ss_pred ceEEEEEeccCccCCCceEEEEEEEECCccCCCeeeEEEEEechhhhc
Q 040877 66 NHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLID 113 (281)
Q Consensus 66 NEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~ 113 (281)
||+|.|.+.... ...|.|+|+|.+ |++||++.++|.++..
T Consensus 105 nE~F~f~v~~~~----~~~L~i~V~D~d----d~~IG~v~i~l~~l~~ 144 (153)
T cd08676 105 NETFRFEVEDVS----NDQLHLDIWDHD----DDFLGCVNIPLKDLPS 144 (153)
T ss_pred ccEEEEEeccCC----CCEEEEEEEecC----CCeEEEEEEEHHHhCC
Confidence 999999997532 148999999987 8999999999999983
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=148.12 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=103.2
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
...|.|+|+.|+||...+..|..||||++++..+.. .|.||+|.+ ++.||+|||+|.|.|....+..
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~----------~k~kT~v~r-~tlnP~fnEtf~f~v~~~~l~~-- 232 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKK----------GKFKTRVHR-KTLNPVFNETFRFEVPYEELSN-- 232 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCC----------Ccceeeeee-cCcCCccccceEeecCHHHhcc--
Confidence 467999999999999988667899999999998731 689999976 6999999999999987544433
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC---CCCcceEEEEEEEEee
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG---HGKPNGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~---~GK~~G~L~Lsl~f~p 145 (281)
..|.|.|+|.|+|.++++||++.++|.++..... ...|+.+... ..+..|+|-|++.+.+
T Consensus 233 ~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~---~~~w~~l~~~~~~~~~~~gel~~sL~Y~p 295 (421)
T KOG1028|consen 233 RVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLST---TLFWKDLQPSSTDSEELAGELLLSLCYLP 295 (421)
T ss_pred CEEEEEEEecCCcccccEEEEEEecCcccccccc---ceeeeccccccCCcccccceEEEEEEeec
Confidence 4999999999999999999999999888766532 3456665543 2223389999999988
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-15 Score=117.85 Aligned_cols=98 Identities=14% Similarity=0.170 Sum_probs=77.1
Q ss_pred EEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEE
Q 040877 8 LKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAF 87 (281)
Q Consensus 8 VtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~ 87 (281)
+-.++|++|+..+.+++.||||+|.+.+.... ...+.||++++ ++.||+|| +|.|.+.......-...|.|
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~-------~~~~~kT~vi~-~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~ 74 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGT-------WVLVYRTEVIK-NTLNPVWK-PFTIPLQKLCNGDYDRPIKI 74 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCC-------EEEEEeeeEec-cCCCCceE-EEEEEHHHhcCCCcCCEEEE
Confidence 44689999999999999999999999764200 01468999987 58999999 78887654221111248999
Q ss_pred EEEECCccCCCeeeEEEEEechhhhcc
Q 040877 88 DLYSEGVIYGYRSIGKVHVPLKDLIDE 114 (281)
Q Consensus 88 eV~d~~~~~gDk~IG~v~VpL~dL~~g 114 (281)
+|+|++.+++|++||++.++|.+|...
T Consensus 75 ~V~d~d~~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 75 EVYDYDSSGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred EEEEeCCCCCCcEEEEEEEEHHHHhcC
Confidence 999999888899999999999999854
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.62 E-value=4e-15 Score=110.16 Aligned_cols=85 Identities=21% Similarity=0.325 Sum_probs=72.7
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEE
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFI 85 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L 85 (281)
|+|+|++|+||...+..++.||||++.+.+... .+.+|++.+ ++.||.|||+|.|.+..... ..|
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~----------~~~~T~~~~-~~~~P~w~e~~~~~~~~~~~----~~l 65 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES----------TKYKTKVKK-NTSNPVWNEEFEFPLDDPDL----DSL 65 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC----------EEEEECCBS-SBSSEEEEEEEEEEESHGCG----TEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeee----------eeeeeeeee-ccccceeeeeeeeeeecccc----cce
Confidence 799999999999988788999999999987531 368999986 47999999999999875432 259
Q ss_pred EEEEEECCccCCCeeeEEEE
Q 040877 86 AFDLYSEGVIYGYRSIGKVH 105 (281)
Q Consensus 86 ~~eV~d~~~~~gDk~IG~v~ 105 (281)
.|+|++.+.++.|++||+++
T Consensus 66 ~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 66 SFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEEEEEETSSSSEEEEEEEE
T ss_pred EEEEEECCCCCCCCEEEEEC
Confidence 99999999887799999985
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.4e-15 Score=149.44 Aligned_cols=122 Identities=14% Similarity=0.222 Sum_probs=100.5
Q ss_pred eEEEEEEEeecCCCC------CCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCc
Q 040877 4 STLELKVNSCSDLKA------FNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFV 77 (281)
Q Consensus 4 g~LeVtViSAkdLk~------~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~ 77 (281)
++|.|+||+|++|+. .+.+...||||+|.|.|.+.|. .++||+++++ +.||+|||+|.|.+....
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~--------~~~kTkvi~n-N~nPvWnE~F~F~i~~PE 540 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADN--------AKKKTKIIED-NWYPAWNEEFSFPLTVPE 540 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCC--------cceeeeeccC-CCCcccCCeeEEEEEcCC
Confidence 579999999999842 1223456999999999977664 6779999876 599999999999988543
Q ss_pred cCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEe
Q 040877 78 DNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLK 144 (281)
Q Consensus 78 ~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~ 144 (281)
.+.|+|+|+|+|...+|++||++++||.+|..|+ .+.+|++.+|+..+.++|-++|.
T Consensus 541 ----LAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy------R~VpL~~~~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 541 ----LALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI------RSVPLHDKKGEKLKNVRLLMRFI 597 (599)
T ss_pred ----ccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc------eeEeCcCCCCCCCCCEEEEEEEE
Confidence 3689999999998778999999999999999986 25688888999888777777764
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.8e-14 Score=141.90 Aligned_cols=111 Identities=14% Similarity=0.204 Sum_probs=90.8
Q ss_pred eEEEEEEEeecCCC----C--CCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCc
Q 040877 4 STLELKVNSCSDLK----A--FNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFV 77 (281)
Q Consensus 4 g~LeVtViSAkdLk----~--~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~ 77 (281)
.+|.|+|++++++. . .+.+...||||+|.|.|.+.|. .++||++. ++|.||+|||+|.|.+....
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~--------~~~kT~v~-~n~~nP~Wneef~F~l~vPE 539 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDE--------VMEKTKIE-YDTWTPIWNKEFIFPLAVPE 539 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCC--------cccceecc-CCCCCCccCCeeEEEEEcCc
Confidence 57999999999873 1 1334557999999999977664 56789975 56899999999999987543
Q ss_pred cCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCc
Q 040877 78 DNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKP 133 (281)
Q Consensus 78 ~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~ 133 (281)
.+.|+|+|+|++...+|++||+.++||.+|..|+ ...+|++.+|..
T Consensus 540 ----LAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy------R~V~L~~~~G~~ 585 (598)
T PLN02230 540 ----LALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI------HAVPLFNRKGVK 585 (598)
T ss_pred ----eeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc------ceEeccCCCcCC
Confidence 4799999999997778999999999999999986 234788887764
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-13 Score=138.02 Aligned_cols=123 Identities=16% Similarity=0.225 Sum_probs=97.1
Q ss_pred eEEEEEEEeecCCCC---C---CCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCee-ceEEEEEeccC
Q 040877 4 STLELKVNSCSDLKA---F---NLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEW-NHMMKFDIKAF 76 (281)
Q Consensus 4 g~LeVtViSAkdLk~---~---~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvW-NEtf~F~V~~~ 76 (281)
.+|+|+||+|++|.. . +.+...|+||+|.|.|.+.+. .+.||+++++ |.||+| ||+|.|.+...
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~--------~~~rTk~~~n-~~nP~W~~e~f~F~~~~p 501 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDT--------VSYRTETAVD-QWFPIWGNDEFLFQLRVP 501 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCC--------CcceeeccCC-CCCceECCCeEEEEEEcC
Confidence 369999999999731 1 223458999999999977664 5779999865 689999 99999998754
Q ss_pred ccCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCc--ceEEEEEEEEee
Q 040877 77 VDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKP--NGVLSFCYKLKG 145 (281)
Q Consensus 77 ~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~--~G~L~Lsl~f~p 145 (281)
. .++|+|+|+|++...+|++||+++|||.+|..|+ ...+|++.+|+. ...|-+.++|.+
T Consensus 502 E----LA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY------R~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 502 E----LALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV------RAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred c----eeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe------eEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 3 4799999999987778999999999999999886 244888888874 345666666554
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=138.76 Aligned_cols=111 Identities=14% Similarity=0.235 Sum_probs=90.4
Q ss_pred eEEEEEEEeecCCC----C--CCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCc
Q 040877 4 STLELKVNSCSDLK----A--FNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFV 77 (281)
Q Consensus 4 g~LeVtViSAkdLk----~--~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~ 77 (281)
++|.|+|++++++. . .+.+...||||+|.|.|.+.|. .++||+++++| .||+|||+|.|.+....
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~--------~~~rTk~v~nn-~nP~W~e~f~F~i~~Pe 522 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDT--------VMKKTKTLEDN-WIPAWDEVFEFPLTVPE 522 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCc--------ceeeeEecCCC-CCcccCCeeEEEEEcCc
Confidence 57999999999852 2 2234567999999999876664 57799998865 79999999999987543
Q ss_pred cCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCc
Q 040877 78 DNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKP 133 (281)
Q Consensus 78 ~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~ 133 (281)
.+.|+|+|+|+|...+|++||++.+||.+|..|+ ...+|++.+|..
T Consensus 523 ----LAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy------R~V~L~~~~g~~ 568 (581)
T PLN02222 523 ----LALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI------RAFPLHSRKGEK 568 (581)
T ss_pred ----eeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc------ceEEccCCCcCC
Confidence 4799999999987778999999999999999986 244788887764
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-13 Score=141.41 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=97.8
Q ss_pred EEEEEEEeecCCC-CCCC--C-CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCC
Q 040877 5 TLELKVNSCSDLK-AFNL--F-NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNC 80 (281)
Q Consensus 5 ~LeVtViSAkdLk-~~~~--~-gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~ 80 (281)
+|.|+|++++++. ..+. + ...||||.|+|.|-+.|+ .++||+++++||.||.|+|+|+|.|..++
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~--------~~~~Tk~v~~NgfnP~W~e~f~F~l~vPE--- 685 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADC--------AEQKTKVVKNNGFNPIWDEEFEFQLSVPE--- 685 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccch--------hhhhceeeccCCcCcccCCeEEEEEeccc---
Confidence 6999999999664 3322 2 457999999999988876 67899988999999999999999998664
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCc--ceEEEEEEEE
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKP--NGVLSFCYKL 143 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~--~G~L~Lsl~f 143 (281)
.+.|+|+|.|+|..++|+|+|+.++||.+|.+|+- ..+|.+..|+. .-.|-+.+++
T Consensus 686 -LAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~GyR------hVpL~~~~G~~~~~asLfv~i~~ 743 (746)
T KOG0169|consen 686 -LALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGYR------HVPLLSREGEALSSASLFVRIAI 743 (746)
T ss_pred -eeEEEEEEEecCCCCcccccceeeccHHHhhCcee------eeeecCCCCccccceeEEEEEEE
Confidence 36999999999988889999999999999999862 34777777763 3444444444
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-13 Score=141.61 Aligned_cols=122 Identities=15% Similarity=0.214 Sum_probs=102.3
Q ss_pred eEEEEEEEeecCCCCCC------------------CCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCee
Q 040877 4 STLELKVNSCSDLKAFN------------------LFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEW 65 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~------------------~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvW 65 (281)
|+|+|||++|++|++.+ ..++.|+||.|.+.+. ...||+++.+...||+|
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a------------~v~rtr~~~~~~~~p~w 75 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKA------------RVGRTRKIENEPKNPRW 75 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCc------------EEEEEeecCCCCCCCcc
Confidence 89999999999998631 0135699999999874 57799999765679999
Q ss_pred ceEEEEEeccCccCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcc--e-EEEEEEE
Q 040877 66 NHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPN--G-VLSFCYK 142 (281)
Q Consensus 66 NEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~--G-~L~Lsl~ 142 (281)
||+|.+.+.... ..|.|.|+|.+. .|..+||.+.||+.+|+.|. .-..||++.+.+||+. | .|+|+++
T Consensus 76 ~e~f~i~~ah~~-----~~v~f~vkd~~~-~g~~~ig~~~~p~~~~~~g~---~i~~~~~~~~~~~~p~~~~~~~~~~~~ 146 (808)
T PLN02270 76 YESFHIYCAHMA-----SNIIFTVKDDNP-IGATLIGRAYIPVEEILDGE---EVDRWVEILDNDKNPIHGGSKIHVKLQ 146 (808)
T ss_pred ccceEEeeccCc-----ceEEEEEecCCc-cCceEEEEEEEEHHHhcCCC---ccccEEeccCCCCCcCCCCCEEEEEEE
Confidence 999999999765 378999999995 58889999999999999874 2456899999999853 3 9999999
Q ss_pred Eeee
Q 040877 143 LKGM 146 (281)
Q Consensus 143 f~p~ 146 (281)
|.++
T Consensus 147 f~~~ 150 (808)
T PLN02270 147 YFEV 150 (808)
T ss_pred EEEc
Confidence 9995
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-13 Score=100.93 Aligned_cols=96 Identities=24% Similarity=0.327 Sum_probs=80.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|++|......+..+|||++.+.+.. ....+|++.++ +.||.|||+|.|.+.... ...
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~----------~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~----~~~ 65 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDP----------KEKKKTKVVKN-TLNPVWNETFEFEVPPPE----LAE 65 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc----------cceEeeeEecC-CCCCcccceEEEEecCcc----cCE
Confidence 478999999999988766789999999998642 14788998764 569999999999998642 248
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhccc
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF 115 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~ 115 (281)
|.|+|++.+..+++.+||.+.++|.++..+.
T Consensus 66 l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 66 LEIEVYDKDRFGRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred EEEEEEecCCccCCceeEEEEEEHHHcccCc
Confidence 9999999987667999999999999998764
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.3e-14 Score=137.88 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=92.4
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
...|+|+|.+|+||...+..|-.||||++.+..++... .|+||++++ .++||+|||+|+|.+..... ++
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~--------sKqKTkTik-~~LNP~wNEtftf~Lkp~Dk-dr- 247 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNE--------SKQKTKTIK-ATLNPVWNETFTFKLKPSDK-DR- 247 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcch--------hhhhhhhhh-hhcCccccceeEEecccccc-cc-
Confidence 45799999999999999999999999999999875432 688999987 49999999999999986432 22
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
.|.|||||.|+..+|+++|...+.+++|+.... ..||.|++
T Consensus 248 -RlsiEvWDWDrTsRNDFMGslSFgisEl~K~p~----~GWyKlLs 288 (683)
T KOG0696|consen 248 -RLSIEVWDWDRTSRNDFMGSLSFGISELQKAPV----DGWYKLLS 288 (683)
T ss_pred -eeEEEEecccccccccccceecccHHHHhhcch----hhHHHHhh
Confidence 689999999988899999999999999998642 34665554
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.8e-13 Score=139.62 Aligned_cols=132 Identities=20% Similarity=0.278 Sum_probs=106.7
Q ss_pred ceEEEEEEEeecCCCCCC--CCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCC
Q 040877 3 WSTLELKVNSCSDLKAFN--LFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNC 80 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~--~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~ 80 (281)
-|.|+|+|.+|++|+..+ ..+..|||+++...+. ...||++.+ +..||+|||+|.+.|....+
T Consensus 435 IGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r------------~~gkT~v~~-nt~nPvwNEt~Yi~lns~~d-- 499 (1227)
T COG5038 435 IGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDR------------VIGKTRVKK-NTLNPVWNETFYILLNSFTD-- 499 (1227)
T ss_pred eEEEEEEEeeccCcccccccccCCCCceEEEEeccc------------cCCccceee-ccCCccccceEEEEecccCC--
Confidence 378999999999999887 4588999999997653 456999965 69999999999999986542
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEeeeEEeecCCCC
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKGMTIKKGEIPS 155 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p~~~~~~~~~~ 155 (281)
.|.++|||.+.+..|+.+|.+.++|..|.+... ....-|++++ +.|..|+|+++++|.|..-.+++-.+
T Consensus 500 ---~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~--~~ne~~e~~~-~~k~vGrL~yDl~ffp~~e~k~~~~~ 568 (1227)
T COG5038 500 ---PLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPV--KKNELYEFLR-NTKNVGRLTYDLRFFPVIEDKKELKG 568 (1227)
T ss_pred ---ceeEEEEeccccCCcceeeeEEechHHhhhccc--cccceeeeec-cCccceEEEEeeeeecccCCcccccc
Confidence 689999998888899999999999999998642 3344566654 78999999999999994333444333
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-12 Score=94.99 Aligned_cols=90 Identities=23% Similarity=0.348 Sum_probs=77.0
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEE
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFI 85 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L 85 (281)
|.|.|++|++|.........++||++.+.+. ...+|++.. ++.||.|||.|.|.+.... ...|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~------------~~~~T~~~~-~~~~P~w~~~~~~~~~~~~----~~~l 63 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK------------QKFKTKVVK-NTLNPVWNETFEFPVLDPE----SDTL 63 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccC------------ceEecceeC-CCCCCcccceEEEEccCCC----CCEE
Confidence 5799999999988766788999999999762 477898875 4789999999999998631 2479
Q ss_pred EEEEEECCccCCCeeeEEEEEechhhh
Q 040877 86 AFDLYSEGVIYGYRSIGKVHVPLKDLI 112 (281)
Q Consensus 86 ~~eV~d~~~~~gDk~IG~v~VpL~dL~ 112 (281)
.|+|++.+...++++||.+.+++.++.
T Consensus 64 ~i~v~~~~~~~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 64 TVEVWDKDRFSKDDFLGEVEIPLSELL 90 (102)
T ss_pred EEEEEecCCCCCCceeEEEEEeHHHhh
Confidence 999999987767999999999999998
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-12 Score=107.53 Aligned_cols=100 Identities=14% Similarity=0.095 Sum_probs=80.3
Q ss_pred EEEEEEEeecCCCC--CCCCCC--CCeEEEEEEecCccchhhhhccccceEEeeecCCCCCC--CeeceEEEEEeccCc-
Q 040877 5 TLELKVNSCSDLKA--FNLFNR--LSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGN--PEWNHMMKFDIKAFV- 77 (281)
Q Consensus 5 ~LeVtViSAkdLk~--~~~~gk--~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~N--PvWNEtf~F~V~~~~- 77 (281)
.|+|+|.+|+|+.. .+..|+ .|+||++++.+... .+++|.|+. +.+| |+||++|.|.+.-..
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~----------~kqkTDVHy-rslnG~~~FNwRfvF~~~~~~~ 69 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEE----------DKQKTDVHY-RSLDGEGNFNWRFVFPFDYLPA 69 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcc----------cccccceEE-ecCCCCcEEeEEEEEeeecCCc
Confidence 38999999999654 334565 89999999998521 588999987 4778 999999999887411
Q ss_pred ------------------cCCCceEEEEEEEECCccCCCeeeEEEEEechhhhccc
Q 040877 78 ------------------DNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF 115 (281)
Q Consensus 78 ------------------~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~ 115 (281)
.......|.|+|||.|.+..|++||++.++|..|.++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 70 EKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 11123689999999999989999999999999998865
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.5e-12 Score=124.48 Aligned_cols=97 Identities=18% Similarity=0.274 Sum_probs=83.4
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|.|++|++|+..+..+-.|+||++++..+.. ++.|+||.+.+ ++.||+|||+|.|.|+...+. .
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~--------~~~kkkT~~~~-~~~npv~nesf~F~vp~~~l~--~ 365 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDK--------RLSKKKTSVKK-KTLNPVFNETFVFDVPPEQLA--E 365 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCc--------eeeeeeeeccc-CCCCCcccccEEEeCCHHHhh--e
Confidence 478999999999999998888899999999987642 24788999865 699999999999999865442 3
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechh
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKD 110 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~d 110 (281)
+.|.|+|+|++.++.+++||.+.+....
T Consensus 366 ~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 366 VSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred eEEEEEEEEcccccccceeeEEEecCCC
Confidence 7999999999999999999998888765
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-12 Score=129.49 Aligned_cols=116 Identities=19% Similarity=0.279 Sum_probs=92.8
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
..+++||+.|++|..++.-|+.||||.+.++. .|+||+++. +..||+|||+|+|.+.+..+
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~k-------------tkrrtrti~-~~lnpvw~ekfhfechnstd----- 355 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK-------------TKRRTRTIH-QELNPVWNEKFHFECHNSTD----- 355 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecc-------------cchhhHhhh-hccchhhhhheeeeecCCCc-----
Confidence 46899999999999999999999999999965 577899875 68999999999999986543
Q ss_pred EEEEEEEECCcc-----------CCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCC--cceEEEEEEEE
Q 040877 84 FIAFDLYSEGVI-----------YGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGK--PNGVLSFCYKL 143 (281)
Q Consensus 84 ~L~~eV~d~~~~-----------~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK--~~G~L~Lsl~f 143 (281)
.|.+.|||+|.- ..|+++|...|-+..|..+- .+||.|-....| ..|.|+|.|.+
T Consensus 356 rikvrvwded~dlksklrqkl~resddflgqtvievrtlsgem-----dvwynlekrtdksavsgairlhisv 423 (1283)
T KOG1011|consen 356 RIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSGEM-----DVWYNLEKRTDKSAVSGAIRLHISV 423 (1283)
T ss_pred eeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecccch-----hhhcchhhccchhhccceEEEEEEE
Confidence 678889998732 25889999999998875432 578888654444 56877666654
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-11 Score=126.84 Aligned_cols=106 Identities=24% Similarity=0.370 Sum_probs=89.7
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeec-eEEEEEeccCccCCCc
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWN-HMMKFDIKAFVDNCNH 82 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWN-Etf~F~V~~~~~~~~~ 82 (281)
-+|.|.||.||.|.+.+ .+-..|||.|+|.|.+.|. .+++|.++.+||.||+|| |+|+|.|.++. .
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt--------~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe----~ 1131 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDT--------NKFKTTVVNDNGLNPIWNPEKFTFEIYNPE----F 1131 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCC--------CceEEEEeccCCCCCCCCCcceEEEeeCCc----e
Confidence 47899999999999654 3556899999999987775 678888888899999999 99999998764 4
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
++|+|+|+++|.|+...+||.++.|++.+..|+ .+.+|++
T Consensus 1132 A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf------RsVpLkN 1171 (1267)
T KOG1264|consen 1132 AFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF------RSVPLKN 1171 (1267)
T ss_pred EEEEEEEecccccCCcceeeeeecchhhhhccc------eeeeccc
Confidence 799999999998777789999999999999886 3446655
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.3e-11 Score=96.86 Aligned_cols=87 Identities=20% Similarity=0.355 Sum_probs=71.2
Q ss_pred EEEEEEeecCCCCCC---CCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 6 LELKVNSCSDLKAFN---LFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 6 LeVtViSAkdLk~~~---~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
|+|+|.+|+||.... +++++|+||+|.+++. .+.||++. +||+|||+|.|+|.. .+
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~------------~kaRTr~s----rnd~WnE~F~i~Vdk----~n- 59 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDV------------ERARTKPS----RNDRWNEDFEIPVEK----NN- 59 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCE------------EEEeccCC----CCCcccceEEEEecC----Cc-
Confidence 789999999999877 6788999999999764 58899874 799999999999952 22
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhccc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF 115 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~ 115 (281)
.+.|.|||+.. ...-.||..=|.|+|+.+.-
T Consensus 60 -Eiel~VyDk~~-~~~~Pi~llW~~~sdi~Ee~ 90 (109)
T cd08689 60 -EEEVIVYDKGG-DQPVPVGLLWLRLSDIAEEI 90 (109)
T ss_pred -EEEEEEEeCCC-CeecceeeehhhHHHHHHHH
Confidence 78899998752 23346999999999998753
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.6e-11 Score=126.21 Aligned_cols=122 Identities=13% Similarity=0.089 Sum_probs=97.9
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
+|.|+|.+++|+||+..+..+..||||++.+.+. ..+||+++++ ++||+|||.|.+.|.+...
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k------------~vyktkv~Kk-tlNPvwNEe~~i~v~~r~~---- 1101 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEK------------SVYKTKVVKK-TLNPVWNEEFTIEVLNRVK---- 1101 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCCCCceEEEEecce------------ecccccchhc-cCCCCccccceEeeecccc----
Confidence 4789999999999999999999999999999874 4789999875 9999999999999986432
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCC--CCcceEEEEEEEEee
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGH--GKPNGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~--GK~~G~L~Lsl~f~p 145 (281)
-.|.|.|+|.+.-.+|++||.+.++|..|..+.. ..+.-+++.. +...|.++....|.+
T Consensus 1102 D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~----~n~~i~ldgk~~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1102 DVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGT----TNSNIPLDGKTFIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred ceEEEEEeecccCCCccccccccccHhhcCcCCc----cceeeeccCcceEecccEeecceecch
Confidence 3788999999877789999999999999998752 1122222322 345677777777766
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.9e-11 Score=119.23 Aligned_cols=122 Identities=17% Similarity=0.237 Sum_probs=104.0
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
..|.|+|.+||||...+..|..|+||.|.++.. ...||.++. .+..|-|.|+|.|.|+-.. -
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E------------~v~RT~tv~-ksL~PF~gEe~~~~iP~~F-----~ 66 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQE------------EVCRTATVE-KSLCPFFGEEFYFEIPRTF-----R 66 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecch------------hhhhhhhhh-hhcCCccccceEEecCcce-----e
Confidence 579999999999999988899999999999875 467899986 4999999999999998654 3
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
.|.|-|||+| +.+|+.||.+.|.=.+|..- .|...|.+++-.+.+...+|+|||+++|.+
T Consensus 67 ~l~fYv~D~d-~~~D~~IGKvai~re~l~~~-~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e 126 (800)
T KOG2059|consen 67 YLSFYVWDRD-LKRDDIIGKVAIKREDLHMY-PGKDTWFSLQPVDPDSEVQGKVHLELALTE 126 (800)
T ss_pred eEEEEEeccc-cccccccceeeeeHHHHhhC-CCCccceeccccCCChhhceeEEEEEEecc
Confidence 8999999999 88999999999998888653 343445555555778889999999999998
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-10 Score=118.14 Aligned_cols=117 Identities=20% Similarity=0.269 Sum_probs=91.4
Q ss_pred eEEEEEEEeecCCCCC----CCC-CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCcc
Q 040877 4 STLELKVNSCSDLKAF----NLF-NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVD 78 (281)
Q Consensus 4 g~LeVtViSAkdLk~~----~~~-gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~ 78 (281)
|+|++||.+|+-+... +.. ...|+||.|.+.+. ...|| ++..||+|||+|.+.+....+
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~------------~v~rt----~~~~~p~w~e~f~i~~ah~~~ 73 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNK------------KVAKT----SHEYDRVWNQTFQILCAHPLD 73 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCc------------EEecC----CCCCCCccccceeEEeeeecC
Confidence 7899999999855432 111 12299999999874 45677 345699999999999986542
Q ss_pred CCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCc-ce-EEEEEEEEeeeE
Q 040877 79 NCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKP-NG-VLSFCYKLKGMT 147 (281)
Q Consensus 79 ~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~-~G-~L~Lsl~f~p~~ 147 (281)
..|.|.|+| +-.+||.+.||+.+|+.|.. ....||++.+.+||+ .| .|+|+++|.++.
T Consensus 74 ----~~~~f~vk~-----~~~~ig~~~~p~~~~~~g~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 74 ----STITITLKT-----KCSILGRFHIQAHQIVTEAS--FINGFFPLIMENGKPNPELKLRFMLWFRPAE 133 (758)
T ss_pred ----CcEEEEEec-----CCeEEEEEEEEHHHhhCCCc--ccceEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence 268899987 57899999999999998742 257899999999985 45 999999999963
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-09 Score=107.39 Aligned_cols=126 Identities=19% Similarity=0.212 Sum_probs=103.5
Q ss_pred ceEEEEEEEeecCCCCCCCC-CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceE-EEEEeccCccCC
Q 040877 3 WSTLELKVNSCSDLKAFNLF-NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHM-MKFDIKAFVDNC 80 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~-gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEt-f~F~V~~~~~~~ 80 (281)
.|+|-|+|..||+|+-.+.. ...|.||.|.+.+ ..+||.|..+ ..||.||.. |.|.|++..+.+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n-------------~t~ktdvf~k-slnp~wnsdwfkfevddadlqd 67 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN-------------TTFKTDVFLK-SLNPQWNSDWFKFEVDDADLQD 67 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecc-------------cceehhhhhh-hcCCcccccceEEecChhhhcc
Confidence 37899999999999988765 4569999999976 5889999875 899999965 999999765544
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEechhhhccc-------CCceEEEEEEEEcCCCCcceEEEEEEEEe
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF-------NGAVRFVRYQIRTGHGKPNGVLSFCYKLK 144 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~-------~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~ 144 (281)
..|+|.+.|+|.+..|+.||.+.|.+.-|+-.. .|..-..|+++.+.---.+|+||+.+++.
T Consensus 68 --eplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvd 136 (1169)
T KOG1031|consen 68 --EPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVD 136 (1169)
T ss_pred --CCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEe
Confidence 389999999999999999999999999887533 13456789999876444889999988764
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.7e-08 Score=102.24 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=82.9
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
.+|.|.|+-|+|+-..|..|-.||||+|++.+.- +--.+..+||+|++ .+.||+++|+|+|.|+...-..+.+
T Consensus 947 q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~------~fp~v~~q~T~V~~-rtLnPVfDE~FeFsVp~e~c~te~A 1019 (1103)
T KOG1328|consen 947 QTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKF------RFPAVPVQKTKVVS-RTLNPVFDETFEFSVPPEPCSTETA 1019 (1103)
T ss_pred cchhhhhhccccccccCCCCCCCCeEEEEecccc------ccccchhhhhhhhh-ccccchhhhheeeecCccccccccc
Confidence 4688899999999999988999999999997631 10112456999976 5999999999999998433222357
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhc
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLID 113 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~ 113 (281)
+|.|+|+|.|-+..|+|-|++.+-|.++-.
T Consensus 1020 m~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1020 MLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred eEEEEeeccceecccccchHHHHhhCCCCC
Confidence 999999999977789999999999988754
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-08 Score=96.64 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=97.6
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEE--eccCccC
Q 040877 2 EWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFD--IKAFVDN 79 (281)
Q Consensus 2 e~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~--V~~~~~~ 79 (281)
|.++++.||..|++|+..++.+..|||++..+.....+ +.+.+|++.+ |+.||.|||+.... ..+.. .
T Consensus 91 ~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~k--------l~slr~~t~~-n~lN~~w~etev~~~i~~~~~-~ 160 (362)
T KOG1013|consen 91 ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGK--------LNSLRTKTTR-NTLNPEWNETEVYEGITDDDT-H 160 (362)
T ss_pred hhhhcceeechhcccchhhhhhhcchHHhhhcccchhh--------hhhhhHHhhc-cCcCcceeccceecccccchh-h
Confidence 45789999999999999999999999999999875432 3567888865 79999999986654 33332 1
Q ss_pred CCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCce-EEEEEEEE--cC--CC-CcceEEEEEEEEee
Q 040877 80 CNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAV-RFVRYQIR--TG--HG-KPNGVLSFCYKLKG 145 (281)
Q Consensus 80 ~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~-~~vsy~L~--~~--~G-K~~G~L~Lsl~f~p 145 (281)
...+++.|+|++.+..++++|+.+|+|+.|........ .++...+- +. .. ..+|.|.+++.|..
T Consensus 161 --~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s 230 (362)
T KOG1013|consen 161 --LKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSS 230 (362)
T ss_pred --hhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCc
Confidence 34788999999989899999999999999887542111 22233332 11 12 46789988888764
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.2e-07 Score=101.30 Aligned_cols=111 Identities=19% Similarity=0.195 Sum_probs=87.8
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEE-eccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFD-IKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~-V~~~~~~~~ 81 (281)
.++|.|-|.-||+|.-..-....||||+..+..++.+. .|+||+|.+ ++.||++||++..+ .+-..+.++
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~--------sKRKTKvvr-kt~~PTfnE~LvY~g~p~~~l~qR 1593 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKT--------SKRKTKVVR-KTRNPTFNEMLVYDGFPKEILQQR 1593 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHh--------hhhhhcccc-ccCCCchhhheeecCCchhhhhhh
Confidence 57899999999999765555678999999999986543 688999998 59999999999988 332223333
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIR 127 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~ 127 (281)
.|++.|+..+.+..+.++|.+.|+|.++--.. ....||+|-
T Consensus 1594 --eLQ~sVls~~~~~en~~lg~v~i~L~~~~l~k---E~~~Wy~lg 1634 (1639)
T KOG0905|consen 1594 --ELQVSVLSNGGLLENVFLGGVNIPLLKVDLLK---ESVGWYNLG 1634 (1639)
T ss_pred --eeeeeeecccceeeeeeeeeeecchhhcchhh---hhcceeecc
Confidence 78999999998888999999999999875432 123677763
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.9e-08 Score=99.29 Aligned_cols=131 Identities=18% Similarity=0.326 Sum_probs=92.1
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchh------hhh--------------ccccceEEeeecCCCCCCCee
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKK------EQR--------------QTCLQRQKTPTDREGGGNPEW 65 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~------~~~--------------~~~~~k~KTkV~~~gg~NPvW 65 (281)
|.|.+..|+||-+++..|..|||+...+.....+.+ +|| -+|+ +-|.|. ..+.||.|
T Consensus 116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlI--katsvk-~~TLnPkW 192 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLI--KATSVK-KKTLNPKW 192 (1103)
T ss_pred HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHh--hhcccc-cccCCcch
Confidence 556778999999998889999999988875422211 111 1111 246664 46999999
Q ss_pred ceEEEEEeccCccCCCceEEEEEEEECCcc---------------------------------CC---CeeeEEEEEech
Q 040877 66 NHMMKFDIKAFVDNCNHLFIAFDLYSEGVI---------------------------------YG---YRSIGKVHVPLK 109 (281)
Q Consensus 66 NEtf~F~V~~~~~~~~~~~L~~eV~d~~~~---------------------------------~g---Dk~IG~v~VpL~ 109 (281)
||+|.|+|.+-. .+ .+++.+||.|.- +. |+|+|-+.|||.
T Consensus 193 ~EkF~F~IeDv~--tD--qfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~ 268 (1103)
T KOG1328|consen 193 SEKFQFTIEDVQ--TD--QFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLA 268 (1103)
T ss_pred hhheeeehhccc--cc--eeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchh
Confidence 999999998643 23 788899976521 11 789999999999
Q ss_pred hhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 110 DLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 110 dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
++-... -.+|..++-|....|.+|.++|.+++..
T Consensus 269 EiP~~G--ld~WFkLepRS~~S~VqG~~~LklwLsT 302 (1103)
T KOG1328|consen 269 EIPPDG--LDQWFKLEPRSDKSKVQGQVKLKLWLST 302 (1103)
T ss_pred cCCcch--HHHHhccCcccccccccceEEEEEEEee
Confidence 987642 2234444444445678999999999875
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.9e-06 Score=88.95 Aligned_cols=109 Identities=22% Similarity=0.285 Sum_probs=84.4
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceE-EEEEeccCccCCCc
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHM-MKFDIKAFVDNCNH 82 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEt-f~F~V~~~~~~~~~ 82 (281)
.+|+|+|||++=|.+.+ ...||.|.+.|-+-+-. | +.+||++..+|+.||+|||. |.|.---.. +.
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~--R----k~~rtrt~~~n~~npvy~eepfvF~KVvLp---eL 769 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTI--R----KEFRTRTVQGNSFNPVYEEEPFVFRKVVLP---EL 769 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhh--h----hhhhhccccCCCCCcccccCCcccceeccc---ch
Confidence 57999999999998754 56999999998766542 2 57899999999999999985 888633211 24
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcce
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNG 135 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G 135 (281)
++|+|-|+++ ++++||.--+|+..|..|+ +++ -||+..+.+-+
T Consensus 770 A~lRiavyeE----ggK~ig~RIlpvd~l~~GY----rhv--~LRse~Nqpl~ 812 (1189)
T KOG1265|consen 770 ASLRIAVYEE----GGKFIGQRILPVDGLNAGY----RHV--CLRSESNQPLT 812 (1189)
T ss_pred hheeeeeecc----CCceeeeeccchhcccCcc----eeE--EecCCCCCccc
Confidence 6899999975 4799999999999998886 344 45677676554
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.9e-06 Score=86.34 Aligned_cols=123 Identities=16% Similarity=0.233 Sum_probs=83.5
Q ss_pred EEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccC-----------c
Q 040877 9 KVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAF-----------V 77 (281)
Q Consensus 9 tViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~-----------~ 77 (281)
.+++++++-... .+.+||||+|...+... . +..+|++.+ .+.||.|||.|.|.+... .
T Consensus 136 ~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~-~--------~~~~T~~~k-kt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~ 204 (800)
T KOG2059|consen 136 HVLKTRQGLPII-NGQCDPFARVTLCGPSK-L--------KEKKTKVKK-KTTNPQFDEVFYFEVTREESYSKKSLFMPE 204 (800)
T ss_pred hhhhhcccCcee-CCCCCcceEEeecccch-h--------hccccceee-eccCcchhhheeeeeccccccccchhcCcc
Confidence 344444443322 35599999999876422 1 346888876 489999999999999744 0
Q ss_pred cCCCceEEEEEEEE-CCccCCCeeeEEEEEechhhhcccCCceEEEEEEEE-cCCCC------cceEEEEEEEEee
Q 040877 78 DNCNHLFIAFDLYS-EGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIR-TGHGK------PNGVLSFCYKLKG 145 (281)
Q Consensus 78 ~~~~~~~L~~eV~d-~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~-~~~GK------~~G~L~Lsl~f~p 145 (281)
...+.+.|++++|+ .+.+.+|.++|+++|++..+.+.. ....||.|+ +.+|. -.|.+++.+.+..
T Consensus 205 ~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s---~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 205 EEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKS---SPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred cCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhcc---CccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 11135789999998 555566999999999999988543 234577666 22332 3477777777765
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.5e-06 Score=77.83 Aligned_cols=94 Identities=19% Similarity=0.127 Sum_probs=75.8
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
..|.|++|.|.+|...+..+-.||||.+++..+-.++ .|+||.+.+ ++.||++|+.|.|++....+.. .
T Consensus 233 ~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~--------fkkKt~~~K-~t~~p~fd~~~~~~i~pgdLa~--~ 301 (362)
T KOG1013|consen 233 PGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKK--------FKKKTQQKK-KTLNPEFDEEFFYDIGPGDLAY--K 301 (362)
T ss_pred CceEEEEEEeeeeeccccCCCCCccceeecCCCcchh--------hcccCcchh-ccCCccccccccccCCccchhc--c
Confidence 4589999999999999988999999999998553332 688999865 5999999999999998765522 4
Q ss_pred EEEEEEEECCccCCCeeeEEEEEec
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPL 108 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL 108 (281)
.|.|.|+|++...+++++|-...-+
T Consensus 302 kv~lsvgd~~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 302 KVALSVGDYDIGKSNDSIGGSMLGG 326 (362)
T ss_pred eEEEeecccCCCcCccCCCcccccc
Confidence 7888999998655788888655433
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.6e-05 Score=80.10 Aligned_cols=119 Identities=19% Similarity=0.218 Sum_probs=86.7
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCcc-chhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGEL-KKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~-~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
..++|+|+.|.||+= ...|--.|||.|.|-|... ||| .|+.|++ +.|+-.|.+||+|.|.+...... ++
T Consensus 1125 hkvtvkvvaandlkw-qtsgmFrPFVEV~ivGP~lsDKK-------RK~~TKt-KsnnWaPKyNEtF~f~Lg~e~~P-e~ 1194 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKW-QTSGMFRPFVEVHIVGPHLSDKK-------RKFSTKT-KSNNWAPKYNETFHFFLGNEGGP-EH 1194 (1283)
T ss_pred ceEEEEEEecccccc-hhccccccceEEEEecCcccchh-------hhccccc-cCCCcCcccCceeEEEeccCCCC-ce
Confidence 468999999999983 2345558999999986432 221 4677776 45789999999999999854332 35
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC-CCCcce
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG-HGKPNG 135 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~-~GK~~G 135 (281)
..|.|.|+|+=--..|+.||.+.++|.++.+.. .-..|++|-+. .....|
T Consensus 1195 YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kG---S~a~W~pLgrrihmDeTG 1245 (1283)
T KOG1011|consen 1195 YELQFCVKDYCFAREDRVVGLAVLQLRSVADKG---SCACWVPLGRRIHMDETG 1245 (1283)
T ss_pred EEEEEeehhheeecccceeeeeeeehhhHhhcC---ceeEeeeccccccccccc
Confidence 789999988764346899999999999998853 23567777542 333445
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.6e-05 Score=67.23 Aligned_cols=108 Identities=22% Similarity=0.322 Sum_probs=74.7
Q ss_pred EEEEEEeecCCCCC---------CC--C--CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEE
Q 040877 6 LELKVNSCSDLKAF---------NL--F--NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFD 72 (281)
Q Consensus 6 LeVtViSAkdLk~~---------~~--~--gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~ 72 (281)
|.|.|+.|-+|+.- ++ . --.+.||++.+.--+.+ .+.+|++.. ++..|.||+.++|.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~---------e~r~TrtVA-rSFcPeF~Hh~Efp 70 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEK---------ELRRTRTVA-RSFCPEFNHHVEFP 70 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCC---------ceeeccchh-hhcCCCccceEEEe
Confidence 57889999999741 11 1 12699999997542211 577899886 49999999999999
Q ss_pred ec--------c---CccCCCceEEEEEEEECCcc----------CCCeeeEEEEEechhhhcccCCceEEEEEE
Q 040877 73 IK--------A---FVDNCNHLFIAFDLYSEGVI----------YGYRSIGKVHVPLKDLIDEFNGAVRFVRYQ 125 (281)
Q Consensus 73 V~--------~---~~~~~~~~~L~~eV~d~~~~----------~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~ 125 (281)
++ + .++--....|.|+||+++.- .+|=+||.+.||+.+|+....|- ..||+
T Consensus 71 c~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGi--tGW~p 142 (143)
T cd08683 71 CNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGI--TGWYP 142 (143)
T ss_pred cccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCc--ccccc
Confidence 87 1 11111345899999986631 24557999999999999865442 34554
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=1e-05 Score=79.26 Aligned_cols=130 Identities=16% Similarity=0.171 Sum_probs=93.9
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCcc-CC--
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVD-NC-- 80 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~-~~-- 80 (281)
..|+++|++++++.-..--...|-||++++.-.. | ++ ++.||.|++ ++..|.++|.|.+.+..... +.
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~n-D---~~----qk~kt~vik-~t~SPdfde~fklni~rg~~~nr~f 437 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLEN-D---SR----QKLKTDVIK-VTPSPDFDEDFKLNIRRGPGLNREF 437 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccc-c---cc----ccCccceee-CCCCCCcccceeeeccCCCcccHHH
Confidence 3578889999888654423346889998875322 2 12 688999987 59999999999999985221 11
Q ss_pred ----CceEEEEEEEECCccCC-CeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 81 ----NHLFIAFDLYSEGVIYG-YRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 81 ----~~~~L~~eV~d~~~~~g-Dk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
.+.-+.|+++++..|.+ |+++|++.|.|.-|...- .-+..|.|.+......|.|.+.+++..
T Consensus 438 qR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~c---ei~e~~~l~DGRK~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 438 QRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMC---EICEYLPLKDGRKAVGGKLEVKVRIRQ 504 (523)
T ss_pred HHHHHhcCeeEEEeeccccccccceeceeeeeehhhhccc---chhhceeccccccccCCeeEEEEEEec
Confidence 23578999999998765 999999999998887643 224567776633335689988888754
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.5e-05 Score=62.35 Aligned_cols=93 Identities=19% Similarity=0.240 Sum_probs=68.1
Q ss_pred EEEEEeecCCCCCCC-CCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEE
Q 040877 7 ELKVNSCSDLKAFNL-FNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFI 85 (281)
Q Consensus 7 eVtViSAkdLk~~~~-~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L 85 (281)
=|||+.|+||.=... ...+..|++=-+.=..+ ...||.+ ++|..||+++|||.|.+....+. ...|
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kp----------v~~KsS~-rrgs~d~~f~ETFVFqi~l~qL~--~V~L 68 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKP----------VHFKSSA-KEGSNDIEFMETFVFAIKLQNLQ--TVRL 68 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCC----------ccccchh-hcCCCChhHHHHHHHHHHHhhcc--ceEE
Confidence 489999999974332 23467777644432211 5788987 56899999999999999855443 3688
Q ss_pred EEEEEECCccCCCeeeEEEEEechhhhcc
Q 040877 86 AFDLYSEGVIYGYRSIGKVHVPLKDLIDE 114 (281)
Q Consensus 86 ~~eV~d~~~~~gDk~IG~v~VpL~dL~~g 114 (281)
.|.|+.. .-+.+.||++.+.|+++-..
T Consensus 69 ~fsv~~~--~~RKe~iG~~sL~l~s~gee 95 (103)
T cd08684 69 VFKIQTQ--TPRKRTIGECSLSLRTLSTQ 95 (103)
T ss_pred EEEeecc--CCccceeeEEEeecccCCHH
Confidence 8888873 34789999999999987653
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.3e-05 Score=79.11 Aligned_cols=87 Identities=14% Similarity=0.223 Sum_probs=70.7
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
|.+.|||++|+ .++ .|+|..+-..|. +.+||.+.+ ++.||+|||.-.|.|..... +
T Consensus 54 ~~~~~~~~~~~----~~~---~~~~~~~~~~g~------------~~f~t~~~~-~~~~p~~~~~~~~~~~~~~~---~- 109 (644)
T PLN02964 54 GIALLTLVGAE----MKF---KDKWLACVSFGE------------QTFRTETSD-STDKPVWNSEKKLLLEKNGP---H- 109 (644)
T ss_pred CeEEEEeehhh----hcc---CCcEEEEEEecc------------eeeeecccc-ccCCcccchhhceEeccCCc---c-
Confidence 67889999997 332 377777666664 799999964 69999999999999986432 2
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcc
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDE 114 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g 114 (281)
+.+|.|+|.+.+..|+++|.+.+.|.++...
T Consensus 110 ~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 110 LARISVFETNRLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred eEEEEEEecCCCCHHHhhhheeecHhhccHH
Confidence 5699999999998999999999999888764
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.70 E-value=2e-05 Score=83.58 Aligned_cols=90 Identities=11% Similarity=0.121 Sum_probs=74.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.++|.|++|-+|...|..|+.||||.|.+++.. ..-++.-+. ++.||++++.|.+...-..+ ..
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~-----------~~d~~~yip-~tlnPVfgkmfel~~~lp~e----k~ 677 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKR-----------TLDRAHYIP-NTLNPVFGKMFELECLLPFE----KD 677 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeeeccch-----------hhhhhhcCc-CCCCcHHHHHHHhhcccchh----hc
Confidence 478999999999999999999999999997631 223455444 69999999999988764432 37
Q ss_pred EEEEEEECCccCCCeeeEEEEEechh
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKD 110 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~d 110 (281)
|.++||+.|.+.+|+.||+..+.|..
T Consensus 678 l~v~vyd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 678 LIVEVYDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred ceeEEEEeecccccchhhceehhhhh
Confidence 89999999998889999999999976
|
|
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0084 Score=49.55 Aligned_cols=126 Identities=17% Similarity=0.221 Sum_probs=79.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCc---cC-C
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFV---DN-C 80 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~---~~-~ 80 (281)
.+.|+|.+..+++.. ...+.+.|-.++... ...+|.........=.|||+|.|.+.-.. .. -
T Consensus 8 ~~~l~i~~l~~~p~~-----~~~v~v~wkr~~~~~---------~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~ 73 (143)
T PF10358_consen 8 QFDLTIHELENLPSS-----NGKVFVKWKRGDKSK---------GSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEF 73 (143)
T ss_pred EEEEEEEEeECcCCC-----CCEEEEEEEECCCCc---------cceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcE
Confidence 578899999988872 233333333343110 13455555556678899999999876211 00 0
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEeee
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKGM 146 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p~ 146 (281)
..-.|.|.|+....-+....||++.|.|+++..... ......+.|... -+.+..|++++.+..+
T Consensus 74 ~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~-~~~~~~~~l~~~-~~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 74 QPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDE-EPITVRLLLKKC-KKSNATLSISISLSEL 137 (143)
T ss_pred eeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCC-CcEEEEEeCccC-CCCCcEEEEEEEEEEC
Confidence 124788888876421223589999999999998531 234566666553 3567789999888773
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0013 Score=57.68 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=54.1
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
+.+.|+|+++.+|.-. ....+.||.+.|..+... .+....|+... ...++.|||.++|+|.=..+.. .+
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~-------L~~p~~T~~~~-~~~~~~Wnewl~F~I~i~dLPr-~A 76 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGES-------LCKTVKTSEVS-GKNDPVWNETLEFDINVCDLPR-MA 76 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEE-------ccCceEccccC-CCCccccceeEEcccchhcCCh-hH
Confidence 5799999999999851 245788999888764211 22344565533 3578999999999886322322 26
Q ss_pred EEEEEEEECC
Q 040877 84 FIAFDLYSEG 93 (281)
Q Consensus 84 ~L~~eV~d~~ 93 (281)
.|.|.||+..
T Consensus 77 rLciti~~~~ 86 (173)
T cd08693 77 RLCFAIYEVS 86 (173)
T ss_pred eEEEEEEEec
Confidence 8899999754
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0021 Score=55.69 Aligned_cols=93 Identities=17% Similarity=0.164 Sum_probs=59.1
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
+.++|+|++|+++.-. ...|-||.+.|..+... ++....|+-.. ..++.|||.++|+|.=..+.. .+
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~-------L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr-~A 74 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEP-------LCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPR-SA 74 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEE-------ccCeeEecccC--CCCCccceeEEcccchhcCCh-hh
Confidence 5799999999988753 23689999988765211 11233444322 368999999999886322322 36
Q ss_pred EEEEEEEECCccCC----CeeeEEEEEech
Q 040877 84 FIAFDLYSEGVIYG----YRSIGKVHVPLK 109 (281)
Q Consensus 84 ~L~~eV~d~~~~~g----Dk~IG~v~VpL~ 109 (281)
.|.|.|++...-.+ ...||.+.++|=
T Consensus 75 rL~iti~~~~~~~~~k~~~~~iG~~ni~LF 104 (158)
T cd08398 75 RLCLSICSVKGRKGAKEEHCPLAWGNINLF 104 (158)
T ss_pred eEEEEEEEEecccCCCCceEEEEEEEEEEE
Confidence 89999998552111 134666666553
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0029 Score=53.74 Aligned_cols=97 Identities=21% Similarity=0.238 Sum_probs=62.7
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
..++|+|....++... .....+.||.+.|..+... .+....|+... ...++.|||.++|++.-..+.. .+
T Consensus 8 ~~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~-------l~~~~~t~~~~-~~~~~~Wne~l~F~i~~~~LP~-~a 77 (156)
T cd08380 8 FNLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEP-------LCPPQSTKKVP-FSTSVTWNEWLTFDILISDLPR-EA 77 (156)
T ss_pred CCeEEEEEeecccccc-CCCceeEEEEEEEEECCEE-------ccCceeccCCc-CCCCCcccceeEccchhhcCCh-hh
Confidence 4678888888887641 1245789999988765311 12344554432 3478999999999976322322 26
Q ss_pred EEEEEEEECCccC--CCeeeEEEEEechh
Q 040877 84 FIAFDLYSEGVIY--GYRSIGKVHVPLKD 110 (281)
Q Consensus 84 ~L~~eV~d~~~~~--gDk~IG~v~VpL~d 110 (281)
.|.|.|++.+... .+..||.+.++|=+
T Consensus 78 rL~itl~~~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 78 RLCLSIYAVSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred eEEEEEEEEecCCCCcceEEEEEeEEeEc
Confidence 8899999865322 34678888877744
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.021 Score=49.70 Aligned_cols=129 Identities=14% Similarity=0.072 Sum_probs=88.3
Q ss_pred eEEEEEEEeecCCCCCCC--CCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCC-
Q 040877 4 STLELKVNSCSDLKAFNL--FNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNC- 80 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~--~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~- 80 (281)
+.|.|+|+.+|-.-+.-. -+..+.-.++.+.=.. ||++|+.+. ..-+|.++|.|.|++.......
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~-----------QRF~S~~Vp-~~~eP~f~e~Flf~l~~~~~~~~ 76 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRG-----------QRFRSKPVP-CACEPDFNEEFLFELPRDSFGAG 76 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecC-----------ceEecCCcc-cccCCCCCCcEEEEecccccccc
Confidence 578999998875433211 1445555555554321 799999987 5899999999999998432100
Q ss_pred --------CceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCC--C-cceEEEEEEEEee
Q 040877 81 --------NHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHG--K-PNGVLSFCYKLKG 145 (281)
Q Consensus 81 --------~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~G--K-~~G~L~Lsl~f~p 145 (281)
-..-|++.|...+..+..+++|+-.+.+..++....+ ......+|..... | +.|+|+|.+.+.|
T Consensus 77 ~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~-~~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 77 STATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNG-STSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred cchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCC-ccceeEEEeccCCCCccceeEEEEEEEeec
Confidence 1125677777666655668999999999999886533 1245566664432 3 8899999999988
|
|
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0042 Score=54.01 Aligned_cols=114 Identities=17% Similarity=0.129 Sum_probs=69.6
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecC---CCCCCCeeceEEEEEeccCccCC
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDR---EGGGNPEWNHMMKFDIKAFVDNC 80 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~---~gg~NPvWNEtf~F~V~~~~~~~ 80 (281)
..+.|+|.++.++...-.....|-||.+.|..+... .+....|+... .-...+.|||.++|++.-..+..
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~-------L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPr 80 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRL-------LCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPR 80 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEE-------CcCceeccccccccCccccccccceEECccchhcCCh
Confidence 468999999999986543345789999988765321 12333454321 11236779999999986322322
Q ss_pred CceEEEEEEEECCccC---------CCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCC-cceEEEEEEEE
Q 040877 81 NHLFIAFDLYSEGVIY---------GYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGK-PNGVLSFCYKL 143 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~---------gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK-~~G~L~Lsl~f 143 (281)
.+.|.|.|++..... .+..||.+.++ |.+.+|+ .+|...|.+.-
T Consensus 81 -earL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~------------------LFd~~~~L~~G~~~L~lW~ 134 (171)
T cd04012 81 -ESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLP------------------LFDFRGVLRQGSLLLGLWP 134 (171)
T ss_pred -hHEEEEEEEEEecCCccccccccccceEEEEEeEe------------------eEcchhhhccCCEEEEecc
Confidence 368999999755322 12345555544 4444444 56777776653
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.015 Score=51.41 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=73.4
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
+.++|+|++++.+ +.+.......||.+.|..+.. .+...+|.-.. -+.++.|||-++|+|.=..+.. .+
T Consensus 10 ~~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~--------~l~~~~T~~~~-~~~~~~WnEwL~f~I~~~dLP~-~a 78 (178)
T cd08399 10 RKFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQ--------VLCQRRTSPKP-FTEEVLWNTWLEFDIKIKDLPK-GA 78 (178)
T ss_pred CCEEEEEEeeccc-CcCCCCceEEEEEEEEEECCe--------ecccceeeccC-CCCCccccccEECccccccCCh-hh
Confidence 5689999998743 333334467888887775421 12233455433 4678999999999987332322 26
Q ss_pred EEEEEEEECCccCC-CeeeEEEEEechhhhcccCCceEEEEEEEEcCCCC-cceEEEEEEEEee
Q 040877 84 FIAFDLYSEGVIYG-YRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGK-PNGVLSFCYKLKG 145 (281)
Q Consensus 84 ~L~~eV~d~~~~~g-Dk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK-~~G~L~Lsl~f~p 145 (281)
.|.|.|++...-.. .+.+|.. +.+.-.+ ...-..++...|.+.+|. .+|...|.+.-.+
T Consensus 79 rLc~ti~~~~~~~~~~~~~~~~--~~~~~~~-~~~~l~wvn~~LFD~~~~Lr~G~~~L~~W~~~ 139 (178)
T cd08399 79 LLNLQIYCGKAPALSSKKSAES--PSSESKG-KHQLLYYVNLLLIDHRFLLRTGEYVLHMWQIS 139 (178)
T ss_pred EEEEEEEEEecCcccccccccc--ccccccc-ccceEEEEEEEEEcCCCceecCCEEEEEecCC
Confidence 89999998532111 1222321 1111100 011234667777777666 7788888877655
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0011 Score=64.54 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=81.6
Q ss_pred eEEEEEEEeecCCCCCCC-CCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 4 STLELKVNSCSDLKAFNL-FNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~-~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
+.|+|-||.|++|..+-- ..-.+|||+|.+..... |+.+.||+..++ +..|.+-..+.|+-... .
T Consensus 269 g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~--------c~ak~ktk~A~k-T~~plyqq~l~f~~sp~-----~ 334 (405)
T KOG2060|consen 269 GDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGF--------CIAKKKTKSARK-TLDPLYQQQLSFDQSPP-----G 334 (405)
T ss_pred CceeEEEEecccccccCCcccccCceeEEEEcCCCc--------eecccccccccc-cCchhhhhhhhhccCCC-----c
Confidence 789999999999975422 23579999999987643 668999999874 66666666788876643 2
Q ss_pred eEEEEEEEE-CCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC
Q 040877 83 LFIAFDLYS-EGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG 129 (281)
Q Consensus 83 ~~L~~eV~d-~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~ 129 (281)
.+|.+.||. +...-.+.|+|.+.|-|.||.-.. .....||.+.-.
T Consensus 335 k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~--~~~igwyKlfgs 380 (405)
T KOG2060|consen 335 KYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSS--SPVIGWYKLFGS 380 (405)
T ss_pred cEEEEEEeccccccchHHHhhHHHHHhhhhcccc--ccceeeeeccCC
Confidence 489999984 445556789999999999987643 245678887643
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.00062 Score=72.68 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=83.4
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccC-----ccCC
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAF-----VDNC 80 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~-----~~~~ 80 (281)
|++.|-.|+.|-..+..+..|||+.|...+ +.+.|-+.. ++.||+||+++.|+-.+. ....
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~-------------qs~~T~~v~-~tl~ptwdq~~~f~~~ei~ge~~~~~~ 273 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFCG-------------QSKETEVVP-GTLNPTWDQTIIFDEVEIYGEAHLVLK 273 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhccc-------------ccceeEeec-CcCCCCccceeeccceeecCccchhhc
Confidence 455667889998888888899999999876 577888875 799999999999974321 0111
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEE
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCY 141 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl 141 (281)
+--.+.|||++.++.+.|+++|.......-..+- + .-.|+++.+ ++...|.++++.
T Consensus 274 ~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~~--p--~lkw~p~~r-g~~l~gd~l~a~ 329 (1105)
T KOG1326|consen 274 NPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQC--P--ALKWVPTMR-GAFLDGDVLIAA 329 (1105)
T ss_pred CCCeEEEEeehhhhhchHHhhcccccceEEEecC--C--ccceEEeec-ccccccchhHHH
Confidence 2347889999999888899999876655444431 1 245666655 445666666554
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0091 Score=60.62 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=67.6
Q ss_pred EEeecCCCCCCCCCCCCeEEEEEEec-CccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEE
Q 040877 10 VNSCSDLKAFNLFNRLSVYSVVSIIN-GELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFD 88 (281)
Q Consensus 10 ViSAkdLk~~~~~gk~DPYVvV~i~g-~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~e 88 (281)
.+.|++|-++++|++.|||..+.=.. ++.. ..-.+|.+.+ +++||.|-+ |.+.+...-.......+.++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~--------~~~~~tEv~~-n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~ 211 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGST--------QMLYRTEVVK-NTLNPQWAP-FSISLQSLCSKDGNRPIQIE 211 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCce--------eeccccceec-cCCCCcccc-cccchhhhcccCCCCceEEE
Confidence 34578888889999999999887543 3211 2567898876 599999976 33333322111123578899
Q ss_pred EEECCccCCCeeeEEEEEechhhhc
Q 040877 89 LYSEGVIYGYRSIGKVHVPLKDLID 113 (281)
Q Consensus 89 V~d~~~~~gDk~IG~v~VpL~dL~~ 113 (281)
++|.+..+++++||++...+.++..
T Consensus 212 ~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 212 CYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred EeccCCCCCcCceeEecccHHHhcc
Confidence 9999977667999999999999974
|
|
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.034 Score=48.11 Aligned_cols=78 Identities=12% Similarity=0.080 Sum_probs=51.0
Q ss_pred CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCccCCCeeeE
Q 040877 23 NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIG 102 (281)
Q Consensus 23 gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG 102 (281)
...|.||.+.|..+... .+....|+.. .-+....|||-+.|+|.=..+..+ +.|.|.||+...-+....||
T Consensus 28 ~~~~l~V~~~l~~~~~~-------L~~pv~T~~~-~f~~~~~WnEwl~fpI~i~dLP~~-a~L~iti~~~~~~~~~~~vg 98 (159)
T cd08397 28 PNSDLFVTCQVFDDGKP-------LTLPVQTSYK-PFKNRRNWNEWLTLPIKYSDLPRN-SQLAITIWDVSGTGKAVPFG 98 (159)
T ss_pred CCCCEEEEEEEEECCEe-------ccCcEEcccc-CCCCCcccceeEEcccchhcCChh-heEEEEEEEecCCCCceEEE
Confidence 45799999998865311 1123345443 245678899999999873323333 68999999876433456788
Q ss_pred EEEEech
Q 040877 103 KVHVPLK 109 (281)
Q Consensus 103 ~v~VpL~ 109 (281)
.+.++|=
T Consensus 99 ~~~~~lF 105 (159)
T cd08397 99 GTTLSLF 105 (159)
T ss_pred EEEEeeE
Confidence 8777763
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.087 Score=44.12 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=47.2
Q ss_pred CeEEEEEEecCccchhhhhcccc-ceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCccCCC----ee
Q 040877 26 SVYSVVSIINGELKKKEQRQTCL-QRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGY----RS 100 (281)
Q Consensus 26 DPYVvV~i~g~~~~~~~~~~~~~-~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gD----k~ 100 (281)
+.||.+.|..+... .+ ..+.|+...-+..++.|||.+.|+|.=..+..+ +.|.|.|++.+...++ ..
T Consensus 3 ~~~V~~~ly~g~~~-------L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~-a~L~~~l~~~~~~~~~~~~~~~ 74 (142)
T PF00792_consen 3 KLYVECQLYHGGEP-------LCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPRE-ARLCFTLYGVDSKKKSKKKKVP 74 (142)
T ss_dssp EEEEEEEEEETTEE-------SS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TT-EEEEEEEEEEECSTTT--EEEE
T ss_pred eEEEEEEEEECCEE-------eecCeeeccccccccccceEeeEEEeecChHHCChh-HeEEEEEEEecCCCccccceeE
Confidence 46788887754321 11 123666544223699999999999863223333 7899999986643344 68
Q ss_pred eEEEEEechhh
Q 040877 101 IGKVHVPLKDL 111 (281)
Q Consensus 101 IG~v~VpL~dL 111 (281)
||++.++|=+.
T Consensus 75 lgw~n~~lFd~ 85 (142)
T PF00792_consen 75 LGWVNLPLFDY 85 (142)
T ss_dssp EEEEEEESB-T
T ss_pred EEEEEEEeECC
Confidence 89888887543
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.37 Score=42.01 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=52.9
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccch-hhh------hc-cccceEEeeecCCCCCCCeeceEEEEEecc
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKK-KEQ------RQ-TCLQRQKTPTDREGGGNPEWNHMMKFDIKA 75 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~-~~~------~~-~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~ 75 (281)
..|-|++.+++==+.. .....+..|+|.+..++... ... .. .......|.|.- ...+|.|||+|.+.|+.
T Consensus 7 N~LYv~~~s~~f~k~~-k~~~rNi~v~v~lr~~d~~~~~~~~i~~~~~~~~~~~~~~S~v~y-h~k~P~f~deiKi~LP~ 84 (184)
T PF14429_consen 7 NDLYVYPKSGNFSKSK-KSSARNIEVTVELRDSDGNIKPLPCIYSRSSGPSFVTSYYSSVYY-HNKNPQFNDEIKIQLPP 84 (184)
T ss_dssp EEEEEEEEEEE-SSSS-SSS---EEEEEEEEETTS--B--S-EE-TTS--S-BS-EE----T-T-SS-EEEEEEEEEE-C
T ss_pred eeEEEEeCEEEECCCC-CCCcccEEEEEEEEeCCCCccccceEECCCCCCCcceEEEEEEEe-cCCCCCccEEEEEEcCc
Confidence 4577888887421211 12345788888887553220 000 01 223455666654 57899999999999996
Q ss_pred CccCCCceEEEEEEEECCccC-C--CeeeEEEEEechh
Q 040877 76 FVDNCNHLFIAFDLYSEGVIY-G--YRSIGKVHVPLKD 110 (281)
Q Consensus 76 ~~~~~~~~~L~~eV~d~~~~~-g--Dk~IG~v~VpL~d 110 (281)
.... ..-|.|++++-..-. + ++.+|.+.+||-+
T Consensus 85 ~l~~--~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 85 DLFP--KHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp CCCT--TEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred hhcc--cEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 5432 357888888644211 2 2689999999988
|
|
| >PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.065 Score=43.69 Aligned_cols=92 Identities=15% Similarity=0.209 Sum_probs=51.5
Q ss_pred ceEEeeecCCCCCCCeeceEEEEEeccCcc---CCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEE
Q 040877 49 QRQKTPTDREGGGNPEWNHMMKFDIKAFVD---NCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQ 125 (281)
Q Consensus 49 ~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~---~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~ 125 (281)
..+.|.+.+ |.||.+|-+..|.|....+ .-....|.||+..... ..-+.||.++|+|.++++... .....+..
T Consensus 11 Etq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~-~~i~~~~~ 86 (107)
T PF11618_consen 11 ETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNG-ERIHGSAT 86 (107)
T ss_dssp --EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S---EEEEEE
T ss_pred eeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCC-ceEEEEEE
Confidence 467899875 8999999999988874321 1112378899886541 235789999999999997643 23455667
Q ss_pred EEcCCCCcceEEEEEEEEe
Q 040877 126 IRTGHGKPNGVLSFCYKLK 144 (281)
Q Consensus 126 L~~~~GK~~G~L~Lsl~f~ 144 (281)
+...+|..-|.|++.+++.
T Consensus 87 l~g~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 87 LVGVSGEDFGTLEYWIRLR 105 (107)
T ss_dssp E-BSSS-TSEEEEEEEEEE
T ss_pred EeccCCCeEEEEEEEEEec
Confidence 7777888999999999875
|
It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A. |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.15 Score=49.39 Aligned_cols=122 Identities=11% Similarity=0.106 Sum_probs=88.8
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccC---CCc
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDN---CNH 82 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~---~~~ 82 (281)
+-|.|++|++.... .+..-.+..++++. ...|-.. .++..|.||..+.+.++-..+. -.+
T Consensus 2 ivl~i~egr~F~~~---~~~~~vv~a~~ng~-------------~l~TDpv-~~~~~p~f~teL~WE~Dr~~l~~~r~~~ 64 (340)
T PF12416_consen 2 IVLSILEGRNFPQR---PRHPIVVEAKFNGE-------------SLETDPV-PHTESPQFNTELAWECDRKALKQHRLQR 64 (340)
T ss_pred EEEEEecccCCCCC---CCccEEEEEEeCCc-------------eeeecCC-CCCCCceeecceeeeccHHHHHHhhccC
Confidence 56889999988765 35688888999873 5667654 4688999999999999732221 135
Q ss_pred eEEEEEEEECC-ccCCCeeeEEEEEechhh---hcccCCceEEEEEEEEcCCCCc---ceEEEEEEEEee
Q 040877 83 LFIAFDLYSEG-VIYGYRSIGKVHVPLKDL---IDEFNGAVRFVRYQIRTGHGKP---NGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~-~~~gDk~IG~v~VpL~dL---~~g~~g~~~~vsy~L~~~~GK~---~G~L~Lsl~f~p 145 (281)
.-|++++|.-+ .-...+.||.+-++|..+ ..+. ......||.|...+.+. +=+|.+++.+..
T Consensus 65 tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~-~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~ 133 (340)
T PF12416_consen 65 TPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKN-QKQKPKWYKLLSSSSKYKKHKPELLLSLSIED 133 (340)
T ss_pred CceEEEEEEecCCCCcceeccEEEEEccccccccccc-cccCCCeeEccccccccccCCccEEEEEEEec
Confidence 68999999876 334578899999999998 3331 13567899998764343 348888877766
|
|
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.057 Score=52.13 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=61.1
Q ss_pred ceEEEEEEEeecCCCCCCC--CCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCC
Q 040877 3 WSTLELKVNSCSDLKAFNL--FNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNC 80 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~--~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~ 80 (281)
.|.|-|++..+++|+.... .-..+-||+++++.. .+.||.| +.++.-=.|.|+|+.+|-..
T Consensus 50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drq------------h~aRt~v-rs~~~~f~w~e~F~~Dvv~~---- 112 (442)
T KOG1452|consen 50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQ------------HPARTRV-RSSGPGFAWAEDFKHDVVNI---- 112 (442)
T ss_pred cceEEEEEecccccccChhccCceeeeeeeeeeccc------------Ccccccc-ccCCCCccchhhceeecccc----
Confidence 4788999999999986533 345699999998753 6888988 55788889999999998742
Q ss_pred CceEEEEEEEECCccCCCee
Q 040877 81 NHLFIAFDLYSEGVIYGYRS 100 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~ 100 (281)
..|.+-|+..+.-.+.|+
T Consensus 113 --~vl~~lvySW~pq~RHKL 130 (442)
T KOG1452|consen 113 --EVLHYLVYSWPPQRRHKL 130 (442)
T ss_pred --eeeeEEEeecCchhhccc
Confidence 378888998775445554
|
|
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.37 Score=38.27 Aligned_cols=80 Identities=11% Similarity=0.072 Sum_probs=48.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.+.+++...+++.-.......|-||.+.|..+... .+....|+.. .....+.|||-++|++.=..+.. .+.
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~-------l~~pv~t~~~-~~~~~~~Wnewl~f~i~i~~LPr-~a~ 82 (100)
T smart00142 12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKL-------LCLPVSTSYK-PFFPSVKWNEWLTFPIQISDLPR-EAR 82 (100)
T ss_pred ceEEEEEEeeCCCcccccCcceEEEEEEEEECCEE-------ccCcEEeccc-CCCCCcccceeEEccCchhcCCh-hhE
Confidence 35667777776654322222489999988765311 1123345432 34556999999999876322222 368
Q ss_pred EEEEEEECC
Q 040877 85 IAFDLYSEG 93 (281)
Q Consensus 85 L~~eV~d~~ 93 (281)
|.|.+++..
T Consensus 83 L~~~i~~~~ 91 (100)
T smart00142 83 LCITIYEVK 91 (100)
T ss_pred EEEEEEEee
Confidence 999998743
|
Outlier of C2 family. |
| >KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.33 Score=52.16 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=74.9
Q ss_pred CCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCccCCCeeeEEE
Q 040877 25 LSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKV 104 (281)
Q Consensus 25 ~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG~v 104 (281)
++.|+.+.+... .-.+|....+.-.+|.|++.|.......+ ..+.|.+.+.+.++..+.+|.+
T Consensus 138 ~e~Ylt~~l~~~------------~~~~t~~~~~f~e~s~~~f~~~~~~~h~~-----g~v~~~~~~~~~~G~s~~w~~v 200 (887)
T KOG1329|consen 138 LENYLTVVLHKA------------RYRRTHVIYEFLENSRWSFSFDIGFAHKA-----GYVIFRVKGARVPGWSKRWGRV 200 (887)
T ss_pred ccchheeeechh------------hhhchhhhhcccccchhhhhccccccccc-----cEEEEeecCCccccceeEEEEe
Confidence 488999888653 34567766654589999999988777543 3889999888865448999999
Q ss_pred EEechhhhcccCCceEEEEEEEEcCCCCcc--e-EEEEEEEEeee
Q 040877 105 HVPLKDLIDEFNGAVRFVRYQIRTGHGKPN--G-VLSFCYKLKGM 146 (281)
Q Consensus 105 ~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~--G-~L~Lsl~f~p~ 146 (281)
++++..++.+. ....++.+.+.++++. | .+.+.+.|.++
T Consensus 201 ~~s~~~~~~~~---~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~ 242 (887)
T KOG1329|consen 201 KISFLQYCSGH---RIGGWFPILDNDGKPHQKGSNESLRLGFTPM 242 (887)
T ss_pred ccchhhhhccc---cccceeeeeccCCccccCCcccceEEeeEee
Confidence 99999999863 3356778877777743 2 55565666664
|
|
| >cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.44 Score=41.51 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=39.2
Q ss_pred EEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCcc-----CCCeeeEEEEEechh
Q 040877 51 QKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVI-----YGYRSIGKVHVPLKD 110 (281)
Q Consensus 51 ~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~-----~gDk~IG~v~VpL~d 110 (281)
.-|.+...+ .+|.|||+|.+.|+..... ..-|.|++++-..- ...+.+|.+.+||-+
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~--~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTP--QHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCC--CeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 334444444 8999999999999754322 35788888864421 125679999999976
|
Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=92.19 E-value=1.5 Score=35.36 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=54.2
Q ss_pred CCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCccCCCeeeEEE
Q 040877 25 LSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKV 104 (281)
Q Consensus 25 ~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG~v 104 (281)
.+..+++.+++. ...+|.-.. -.+-.|+++|.|++.-. -.|.|.|+-.| . ..+-|..
T Consensus 9 ~eV~avLklDn~------------~VgqT~Wk~--~s~q~WDQ~Fti~LdRs------RELEI~VywrD-~--RslCav~ 65 (98)
T cd08687 9 SEVSAVLKLDNT------------VVGQTQWKP--KSNQAWDQSFTLELERS------RELEIAVYWRD-W--RSLCAVK 65 (98)
T ss_pred cceEEEEEEcCe------------EEeeccccc--cccccccceeEEEeecc------cEEEEEEEEec-c--hhhhhhe
Confidence 688899999764 345565532 46899999999999742 26788887554 2 3455677
Q ss_pred EEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEE
Q 040877 105 HVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKL 143 (281)
Q Consensus 105 ~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f 143 (281)
.+-|.|...+. .. .--++|.|-..++|
T Consensus 66 ~lrLEd~~~~~-------~~-----~lepqg~l~~ev~f 92 (98)
T cd08687 66 FLKLEDERHEV-------QL-----DMEPQLCLVAELTF 92 (98)
T ss_pred eeEhhhhcccc-------ee-----ccccccEEEEEEEe
Confidence 77777743321 11 22466666666665
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.51 Score=42.29 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=41.1
Q ss_pred ceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCcc-CC-CeeeEEEEEechh
Q 040877 49 QRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVI-YG-YRSIGKVHVPLKD 110 (281)
Q Consensus 49 ~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~-~g-Dk~IG~v~VpL~d 110 (281)
...+|-|.. ...+|.|||+|.+.|+..... ..-|+|++++-..- .+ .+.+|.+-+||-+
T Consensus 53 se~~S~V~y-H~~~P~W~EtiKi~lP~~~~~--~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFVLY-HNNSPRWNETIKLPIPIDKFR--GSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEEEE-cCCCCCCceeEEEecChhhCC--CeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 466888765 478999999999999854332 35788877753211 12 2679999999854
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.69 Score=41.72 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=40.5
Q ss_pred ceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCcc-CC---CeeeEEEEEech
Q 040877 49 QRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVI-YG---YRSIGKVHVPLK 109 (281)
Q Consensus 49 ~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~-~g---Dk~IG~v~VpL~ 109 (281)
...+|-|.. ...+|.|||+|.+.|+..... ..-|+|++++-..- .+ .+.+|.+-+||-
T Consensus 53 se~~S~V~Y-h~~~P~W~EtIKl~lP~~~~~--~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYY-QVDKPKWFETFKVAIPIEDFK--SSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEe-ecCCCCCceeEEEecChhhCC--CeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 567888744 367999999999999854332 35788888753211 12 367999889885
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PF14924 DUF4497: Protein of unknown function (DUF4497) | Back alignment and domain information |
|---|
Probab=88.03 E-value=2.2 Score=34.55 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=44.0
Q ss_pred eEEEEEEEECCc---cCCCeeeEEEEEechhhhccc----------CC-ceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 83 LFIAFDLYSEGV---IYGYRSIGKVHVPLKDLIDEF----------NG-AVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~~---~~gDk~IG~v~VpL~dL~~g~----------~g-~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
..|.+.++..-. .....+||++.|+|.+++..- .. ......|.|++..|...|+|.+.+|+.-
T Consensus 29 ~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~G~I~l~iRLsc 105 (112)
T PF14924_consen 29 FPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPVGEISLYIRLSC 105 (112)
T ss_pred CceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCceeeeEEEEEEEec
Confidence 356665554321 234678999999999987422 00 1234578999999999999999999864
|
|
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=87.67 E-value=2.5 Score=36.69 Aligned_cols=74 Identities=14% Similarity=0.199 Sum_probs=55.7
Q ss_pred CCCCeEEEEEEecCccchhhhhccccceEEeeecC-CCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCccCCCeee
Q 040877 23 NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDR-EGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSI 101 (281)
Q Consensus 23 gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~-~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~I 101 (281)
.+..-|++|.+++. ...+|+... .....=.+||.|.+.|.... ..|.++||.... .++..|
T Consensus 35 ~~~~~~ikl~~N~k------------~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P-----esi~l~i~E~~~-~~~~~l 96 (168)
T PF15625_consen 35 QKTRYYIKLFFNDK------------EVSRTRSRPLWSDFRVHFNEIFNVQITRWP-----ESIKLEIYEKSG-LSDRLL 96 (168)
T ss_pred hheeEEEEEEECCE------------EEEeeeeEecCCCeEEeccCEEEEEEecCC-----CEEEEEEEEccC-ccceEE
Confidence 45788999999763 345555543 24567788999999997643 279999998886 689999
Q ss_pred EEEEEechhhhcc
Q 040877 102 GKVHVPLKDLIDE 114 (281)
Q Consensus 102 G~v~VpL~dL~~g 114 (281)
+++.||+-.....
T Consensus 97 a~v~vpvP~~~~~ 109 (168)
T PF15625_consen 97 AEVFVPVPGSTVH 109 (168)
T ss_pred EEEEeeCCCCccc
Confidence 9999999776654
|
|
| >cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins | Back alignment and domain information |
|---|
Probab=86.79 E-value=2.1 Score=37.96 Aligned_cols=59 Identities=19% Similarity=0.307 Sum_probs=40.6
Q ss_pred ceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCccC---C---CeeeEEEEEechh
Q 040877 49 QRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIY---G---YRSIGKVHVPLKD 110 (281)
Q Consensus 49 ~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~---g---Dk~IG~v~VpL~d 110 (281)
....|.|.- .+.+|.|+|+|.+.|+..... ..-|.|++++-..-. + .+.||-+-+||-+
T Consensus 54 ~~~~S~V~y-Hnk~P~f~DEiKi~LP~~l~~--~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTY-HNKSPDFYDEIKIKLPADLTD--NHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEE-eCCCCcccceEEEEcCCCCCC--CeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 466777765 578999999999999964332 246778877632111 1 3568988888854
|
Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand |
| >PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A | Back alignment and domain information |
|---|
Probab=84.47 E-value=4.1 Score=35.24 Aligned_cols=101 Identities=14% Similarity=0.123 Sum_probs=54.2
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCC-CCCCCeeceEEEEEeccCccCCCc
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDRE-GGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~-gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
..|.|.|-+.. |++...+ .|||+.|++.... +.-....+.|.+... .+.-=.||.+.++...-..+.. .
T Consensus 13 t~l~v~Iekig-lkda~~~--~~P~~tVSV~D~~------G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~-G 82 (147)
T PF14186_consen 13 TYLSVFIEKIG-LKDASQY--IDPYFTVSVKDGN------GKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPK-G 82 (147)
T ss_dssp -EEEEEEEEEE--TTGGG---EEEEEEEEEE-TT------S-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-T-T
T ss_pred ceEEEEEEEEE-ECChHHc--cCCeEEEEEECCC------CCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCC-c
Confidence 35777766665 8775432 5999999997431 111235667887632 3445567766666544222222 4
Q ss_pred eEEEEEEEECCccCC-CeeeEEEEEechhhhcc
Q 040877 83 LFIAFDLYSEGVIYG-YRSIGKVHVPLKDLIDE 114 (281)
Q Consensus 83 ~~L~~eV~d~~~~~g-Dk~IG~v~VpL~dL~~g 114 (281)
+.|.||++++..-.+ -...+++.+.+.++..|
T Consensus 83 aai~fE~kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 83 AAIFFEFKHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp -EEEEEEEEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred eEEEEEEEeeeccceeeeeeEEEEEEhhhccCC
Confidence 789999999764222 23478999999988876
|
|
| >cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins | Back alignment and domain information |
|---|
Probab=82.90 E-value=4.3 Score=36.22 Aligned_cols=59 Identities=15% Similarity=0.248 Sum_probs=40.7
Q ss_pred ceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCcc---------CCCeeeEEEEEechh
Q 040877 49 QRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVI---------YGYRSIGKVHVPLKD 110 (281)
Q Consensus 49 ~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~---------~gDk~IG~v~VpL~d 110 (281)
....|.|.-. +.+|.|+|+|.+.|+..... .--|.|++++-..- ...+.+|-+-+||-.
T Consensus 56 ~~~~s~V~yh-~k~P~f~dEiKI~LP~~l~~--~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHH-NQNPEFYDEIKIELPTQLHE--KHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEc-CCCCccceeEEEecCCcCCC--CeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 4567777654 69999999999999854332 24677887764311 113569999999865
|
Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 23/145 (15%)
Query: 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPE 64
TLE+ + S L+ + N + Y ++ Q QK+ G PE
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRT-------------QDQKSNVAEGMGTTPE 57
Query: 65 WNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRY 124
WN F + + L ++ + V ++G+ +PL+ + E +
Sbjct: 58 WNETFIFTVS---EGTTELK--AKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYN- 111
Query: 125 QIRTGHGKPNGV--LSFCYKLKGMT 147
+ G ++ +K G +
Sbjct: 112 --VVKDEEYKGEIWVALSFKPSGPS 134
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-05
Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 26/158 (16%)
Query: 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNP 63
S L++ V S + + S Y V++ +G Q +KT +P
Sbjct: 36 SQLQITVISAKLKENKKNWFGPSPYVEVTV-DG------------QSKKTEKCN-NTNSP 81
Query: 64 EWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVR 123
+W + + + F ++S + +G + + + + N + V
Sbjct: 82 KWKQPLTVIVT------PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVV 135
Query: 124 YQIRTGHGKPN----GVLSFCYKLKGMTIKKGEIPSPE 157
++ G K G LS C L G+ ++ + + E
Sbjct: 136 VTLQLGGDKEPTETIGDLSIC--LDGLQLESEVVTNGE 171
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 5e-05
Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEW 65
L + + S+LKA +L Y S+I+ + K ++KT ++ NP +
Sbjct: 154 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLK--------KRKTSI-KKNTLNPTY 204
Query: 66 NHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPL 108
N + FD+ ++ ++ ++ + I IG V
Sbjct: 205 NEALVFDVAP--ESVENVGLSIAVVDYDCIGHNEVIGVCRVGP 245
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 11/103 (10%)
Query: 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEW 65
L + + +LK ++ Y + ++ + K ++KT ++ NP +
Sbjct: 152 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLK--------KKKTTI-KKNTLNPYY 202
Query: 66 NHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPL 108
N F++ + + + + I +IGKV V
Sbjct: 203 NESFSFEVPF--EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY 243
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 281 | |||
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.92 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.91 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.88 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.88 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.88 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.88 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.87 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.87 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.87 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.87 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.86 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.86 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.83 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.82 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.82 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.82 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.82 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.82 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.82 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.81 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.81 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.81 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.81 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.81 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.81 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.81 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.81 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.81 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.81 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.81 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.8 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.8 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.79 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.79 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.79 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.78 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.77 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.77 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.76 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.72 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.68 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.67 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.61 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.6 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.6 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.59 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.56 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.55 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.5 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.93 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.8 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 95.73 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 95.29 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 95.17 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 94.1 | |
| 2y3a_A | 1092 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 92.62 | |
| 1e7u_A | 961 | Phosphatidylinositol 3-kinase catalytic subunit; p | 92.43 | |
| 2qzq_A | 152 | Axin interactor, dorsalization associated protein; | 85.38 |
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-24 Score=174.27 Aligned_cols=122 Identities=20% Similarity=0.313 Sum_probs=107.2
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|++|+..+.+++.||||+|++.+ ++.||+++++++.||+|||+|.|.+.+. .
T Consensus 9 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~-------------~~~kT~~~~~~~~nP~Wne~f~f~v~~~-----~ 70 (136)
T 1wfj_A 9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT-------------QDQKSNVAEGMGTTPEWNETFIFTVSEG-----T 70 (136)
T ss_dssp EEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS-------------CEEECCCCTTCCSSCEEEEEEEEEEESS-----C
T ss_pred cEEEEEEEEeccCCCCcccCCCcCceEEEEECC-------------ccceeEeccCCCCCCccCcEEEEEECCC-----C
Confidence 578999999999999999899999999999976 4679999876799999999999999852 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
..|+|+|||++.+++|++||++.|+|.+|.... .....||+|. .+++..|+|+|+++|.|
T Consensus 71 ~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~--~~~~~w~~L~-~~~~~~G~i~l~l~~~p 130 (136)
T 1wfj_A 71 TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG--SIPPTAYNVV-KDEEYKGEIWVALSFKP 130 (136)
T ss_dssp CEEEEEECCSSSCTTTCCSEEEEEESHHHHHHS--EEEEEEEEEE-ETTEEEEEEEEEEEEEE
T ss_pred CEEEEEEEECCCCCCCceEEEEEEEHHHhccCC--CCCcEEEEee-cCCccCEEEEEEEEEEe
Confidence 489999999998888999999999999996532 3457789988 57789999999999998
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=5e-23 Score=167.51 Aligned_cols=124 Identities=19% Similarity=0.288 Sum_probs=103.6
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+..+. ++.||||+|++.+ +++||++++ ++.||+|||+|.|.+...... ..
T Consensus 6 ~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~-------------~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~-~~ 69 (140)
T 2dmh_A 6 SGMLRVIVESASNIPKTKF-GKPDPIVSVIFKD-------------EKKKTKKVD-NELNPVWNEILEFDLRGIPLD-FS 69 (140)
T ss_dssp CCEEEEEEEEEESCCCCSS-SCCCEEEEEECSS-------------CEEECCCCC-SCSSCEEEEEEEEECSSCCCC-TT
T ss_pred CcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECC-------------EeEEeeeec-CCCCCccCcEEEEEecccccC-CC
Confidence 4799999999999999988 9999999999975 578999976 589999999999999753221 12
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEE---EEcCCC-CcceEEEEEEEEee
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQ---IRTGHG-KPNGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~---L~~~~G-K~~G~L~Lsl~f~p 145 (281)
..|+|+|||++.+++|++||++.|+|.+|..+.. ...||. |.+.++ +.+|.|+|+++|.+
T Consensus 70 ~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~---~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p 133 (140)
T 2dmh_A 70 SSLGIIVKDFETIGQNKLIGTATVALKDLTGDQS---RSLPYKLISLLNEKGQDTGATIDLVIGYDP 133 (140)
T ss_dssp CEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSC---EEEEEEEEEEECTTCCEEEEEEEEEEEECC
T ss_pred CEEEEEEEECCCCCCCceEEEEEEEHHHhccCCC---ceeEEeeeeccCCCCCCCCCEEEEEEEEEC
Confidence 5899999999988889999999999999977542 234554 777655 47799999999998
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-22 Score=164.88 Aligned_cols=118 Identities=25% Similarity=0.324 Sum_probs=101.6
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+..+.++++||||+|++.+ +++||+++++ +.||+|||+|.|.+.+..
T Consensus 12 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~-------------~~~kT~~~~~-t~nP~wne~f~f~~~~~~----- 72 (133)
T 2ep6_A 12 VGILQVKVLKAADLLAADFSGKSDPFCLLELGN-------------DRLQTHTVYK-NLNPEWNKVFTFPIKDIH----- 72 (133)
T ss_dssp SEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT-------------EEEECCCCSS-CSSCCCCEEEEEEESCTT-----
T ss_pred ceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC-------------EEEEeeeecC-CCCCccccEEEEEecCCC-----
Confidence 589999999999999999899999999999965 4789999875 899999999999997531
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCC--CCcceEEEEEEEEe
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGH--GKPNGVLSFCYKLK 144 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~--GK~~G~L~Lsl~f~ 144 (281)
..|+|+|+|++.+++|++||++.|+|.++..+. ..||+|...+ ++.+|+|+|+++|.
T Consensus 73 ~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~w~~L~~~~~~~~~~G~i~l~i~~~ 131 (133)
T 2ep6_A 73 DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ-----PNCYVLKNKDLEQAFKGVIYLEMDLI 131 (133)
T ss_dssp CEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC-----CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred CEEEEEEEECCCCCCCCeeEEEEEEHHHccCCC-----ceEEEeecCCCCCccceEEEEEEEEE
Confidence 389999999998878999999999999997643 2578887654 45889999999885
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-22 Score=169.72 Aligned_cols=130 Identities=20% Similarity=0.260 Sum_probs=99.3
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|++|+..+.++++||||+|++.+...+ ..+++||++++ ++.||+|||+|.|.+....
T Consensus 7 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~-------~~~~~kT~v~~-~t~nP~Wne~f~f~v~~~~----- 73 (176)
T 3m7f_B 7 TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSG-------ILTSVQTKTIK-KSLNPKWNEEILFRVLPQR----- 73 (176)
T ss_dssp CEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTE-------EEEEEECCCCS-SCSSCEEEEEEEEEECTTT-----
T ss_pred cEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCC-------cccceeCceEC-CCCCCcccceEEEEEcCCC-----
Confidence 5899999999999999998999999999999863211 11478999987 5999999999999997421
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCC---ceEEEEEEEEcC--CCCcceEEEEEEEEee
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNG---AVRFVRYQIRTG--HGKPNGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g---~~~~vsy~L~~~--~GK~~G~L~Lsl~f~p 145 (281)
..|.|+|||.+.+++|++||++.|+|.+|..+... .....||.|... .++.+|.|+|+++|.|
T Consensus 74 ~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p 141 (176)
T 3m7f_B 74 HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 141 (176)
T ss_dssp CEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred CEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEe
Confidence 48999999999888899999999999999876421 011267887753 4567899999999998
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-22 Score=164.73 Aligned_cols=130 Identities=18% Similarity=0.276 Sum_probs=99.2
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|++|+..+.+++.||||+|++.+.... ...++||+++++ +.||+|||+|.|.+... .
T Consensus 19 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~-------~~~~~kT~v~~~-t~nP~wne~f~f~v~~~-----~ 85 (153)
T 3b7y_A 19 SRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNG-------VLTSVQTKTIKK-SLNPKWNEEILFRVHPQ-----Q 85 (153)
T ss_dssp CEEEEEEEEEEESCC-------CCEEEEEEEEETTTE-------EEEEEECCCCSS-CSSCCCCEEEEEEECTT-----T
T ss_pred ccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc-------cceeeeCccccC-CCCCCCCCEEEEEecCC-----C
Confidence 3689999999999999988899999999999853210 015789999875 89999999999999752 1
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCC---ceEEEEEEEEcC--CCCcceEEEEEEEEee
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNG---AVRFVRYQIRTG--HGKPNGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g---~~~~vsy~L~~~--~GK~~G~L~Lsl~f~p 145 (281)
..|+|+|||++.+++|++||++.|+|.+|..+... .....||+|... .++..|+|+|+++|.|
T Consensus 86 ~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 86 HRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred CEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence 48999999999888899999999999999876531 122468888654 3467899999999975
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-22 Score=162.80 Aligned_cols=118 Identities=16% Similarity=0.222 Sum_probs=97.3
Q ss_pred ceEEEEEEEeecCCCCCCCCCC-----------CCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEE
Q 040877 3 WSTLELKVNSCSDLKAFNLFNR-----------LSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKF 71 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk-----------~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F 71 (281)
.+.|+|+|++|+||+..+.+++ .||||+|.+.+. ...||++.+ ++.||+|||+|.|
T Consensus 5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~------------~~~~T~~~~-~t~nP~WnE~f~f 71 (136)
T 1gmi_A 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDS------------RIGQTATKQ-KTNSPAWHDEFVT 71 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTE------------EEEECCCCS-SCSSCEEEEEEEE
T ss_pred ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCe------------EeeeeeEEC-CCcCCccCCEEEE
Confidence 5899999999999998876554 899999999542 356888865 5899999999999
Q ss_pred EeccCccCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 72 DIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 72 ~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
.+.+. ..|.|+|||++.+++|++||++.|+|.++..+.. .....|+.| +++|.|+|.++|.+
T Consensus 72 ~v~~~------~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~-~~~~~w~~L-----~~~G~i~l~l~~~~ 133 (136)
T 1gmi_A 72 DVCNG------RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGS-RHFEDWIDL-----EPEGKVYVIIDLSG 133 (136)
T ss_dssp EEEEE------CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTC-SEEEEEEEC-----BSSCEEEEEEEEEE
T ss_pred EecCC------CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCC-CCccEEEEc-----CCCeEEEEEEEEEe
Confidence 99743 3899999999988889999999999999987532 233567765 35899999999976
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=168.13 Aligned_cols=124 Identities=18% Similarity=0.217 Sum_probs=101.6
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.++|+|+|++|++|++.+.+++.||||+|++.+ +++||++++ ++.||+|||+|.|.+.. .
T Consensus 35 ~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~-------------~~~kT~v~~-~tlnP~Wne~f~f~v~~------~ 94 (173)
T 2nq3_A 35 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-------------QSKKTEKCN-NTNSPKWKQPLTVIVTP------V 94 (173)
T ss_dssp CEEEEEEEEEEEECCCC--CCCCCEEEEEEETT-------------EEEECCCCS-SCSSCEEEEEEEEEECT------T
T ss_pred ceEEEEEEEEeECCCCcccCCCCCeEEEEEECC-------------EEeEccccC-CCCCCeECCEEEEEeCC------C
Confidence 478999999999999554456699999999965 478999987 68999999999999853 1
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceE--EEEEEEEcCC--CCcceEEEEEEEEeee
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVR--FVRYQIRTGH--GKPNGVLSFCYKLKGM 146 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~--~vsy~L~~~~--GK~~G~L~Lsl~f~p~ 146 (281)
..|.|+|||++.+++|++||++.|+|.+|..+..+... ..|++|...+ .+..|+|+|++.+.++
T Consensus 95 ~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~ 162 (173)
T 2nq3_A 95 SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL 162 (173)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred CEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence 38999999999888899999999999999987644322 5688887653 4578999999988864
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=159.60 Aligned_cols=118 Identities=16% Similarity=0.210 Sum_probs=99.3
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|++|+..+.+++.||||+|.+.+ ++.||++++ ++.||+|||+|.|.+....
T Consensus 16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-------------~~~kT~~~~-~t~nP~Wne~f~f~v~~~~----- 76 (148)
T 3kwu_A 16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVGK-------------TKKRTKTIY-GNLNPVWEENFHFECHNSS----- 76 (148)
T ss_dssp CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT-------------EEEECCCCC-SCSSCEEEEEEEEEECSTT-----
T ss_pred ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECC-------------EEEECCccC-CCCCCCcccEEEEEecCCC-----
Confidence 589999999999999999899999999999943 578999987 5899999999999997532
Q ss_pred eEEEEEEEECCcc-----------CCCeeeEEEEEechhhhcccCCceEEEEEEEEcCC--CCcceEEEEEEEEe
Q 040877 83 LFIAFDLYSEGVI-----------YGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGH--GKPNGVLSFCYKLK 144 (281)
Q Consensus 83 ~~L~~eV~d~~~~-----------~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~--GK~~G~L~Lsl~f~ 144 (281)
..|.|+|||.+.+ ++|++||++.|+|.++.. ....||.|...+ ++.+|.|+|+++|.
T Consensus 77 ~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~-----~~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 77 DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSG-----EMDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp CEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCCS-----EEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred CEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCcC-----CCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence 3799999999975 689999999999999832 235678887443 44779999999885
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=158.03 Aligned_cols=123 Identities=14% Similarity=0.209 Sum_probs=98.5
Q ss_pred CCceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCC
Q 040877 1 MEWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNC 80 (281)
Q Consensus 1 Me~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~ 80 (281)
++..+|+|+|++|++|+..+.+++.||||+|++.+.. +++||++++ ++.||+|||+|.|.+...
T Consensus 2 ~~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~-----------~~~kT~v~~-~t~nP~wne~f~f~v~~~---- 65 (132)
T 3pyc_A 2 SEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSG-----------QCHSTDTVK-NTLDPKWNQHYDLYVGKT---- 65 (132)
T ss_dssp CSEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTC-----------CEEECCCCS-SCSSCEEEEEEEEEEETT----
T ss_pred CCeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCC-----------ceEECCccC-CCCCCCccCEEEEEeCCC----
Confidence 3668999999999999999999999999999996531 588999985 699999999999999742
Q ss_pred CceEEEEEEEECCccCC---CeeeEEEEEechhhhcccCCceEEEEEEEEcCC----CCcceEEEEEEEE
Q 040877 81 NHLFIAFDLYSEGVIYG---YRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGH----GKPNGVLSFCYKL 143 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~g---Dk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~----GK~~G~L~Lsl~f 143 (281)
. .|.|+|||++.+++ |++||++.|+|.+|....... ..+++|...+ .+.+|+|+|++..
T Consensus 66 ~--~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~--~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 66 D--SITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTG--YQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp C--CEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSC--CEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred C--EEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccC--cEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 1 49999999998765 799999999999985543222 2446665442 2358999998864
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=7e-22 Score=168.23 Aligned_cols=118 Identities=13% Similarity=0.153 Sum_probs=97.1
Q ss_pred ceEEEEEEEeecCCCCCCCC----------CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEE
Q 040877 3 WSTLELKVNSCSDLKAFNLF----------NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFD 72 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~----------gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~ 72 (281)
.+.|+|+|++|+||+..+.. +.+||||+|.+++. +..||++.+ ++.||+|||+|.|.
T Consensus 28 ~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~------------~~~kT~v~~-ktlnP~WNE~F~f~ 94 (157)
T 2fk9_A 28 NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQV------------RVGQTSTKQ-KTNKPTYNEEFCAN 94 (157)
T ss_dssp EEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTE------------EEEECCCCS-SCSSCEEEEEEEEE
T ss_pred ccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCE------------eeEEeeecC-CCCCCccCcEEEEE
Confidence 48999999999999987632 56899999999652 357899865 59999999999999
Q ss_pred eccCccCCCceEEEEEEEECCccCCCeeeEEEEEechhhhccc-CCceEEEEEEEEcCCCCcceEEEEEEEEe
Q 040877 73 IKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF-NGAVRFVRYQIRTGHGKPNGVLSFCYKLK 144 (281)
Q Consensus 73 V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~-~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~ 144 (281)
+.+. ..|.|+|+|++.++.|++||++.|+|.+|..+. .+.....||+|. ++|.|+|.++|.
T Consensus 95 v~~~------~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~-----~~G~i~l~l~~~ 156 (157)
T 2fk9_A 95 VTDG------GHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE-----PEGKVFVVITLT 156 (157)
T ss_dssp EEEE------CEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB-----SSCEEEEEEEEC
T ss_pred cCCC------CEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC-----CCcEEEEEEEEE
Confidence 9642 379999999998888999999999999999762 123457888883 389999999885
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=160.47 Aligned_cols=120 Identities=18% Similarity=0.263 Sum_probs=88.5
Q ss_pred CCceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCC
Q 040877 1 MEWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNC 80 (281)
Q Consensus 1 Me~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~ 80 (281)
|..+.|.|+|++|++|.. .+++||||+|+ + ++.||+++++++.||+|||+|.|.+....
T Consensus 2 ~~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~-------------~~~kt~~~~~~t~nP~WnE~f~f~v~~~~--- 60 (131)
T 2cjt_A 2 GVMSLLCVGVKKAKFDGA---QEKFNTYVTLK--V-------------QNVKSTTIAVRGSQPSWEQDFMFEINRLD--- 60 (131)
T ss_dssp CCCEEEEEEEEEEECSSC---GGGCEEEEEEE--E-------------TTEEEECCCEESSSCEEEEEEEEEECCCS---
T ss_pred CcceEEEEEEEEeECCCC---CCCcCeEEEEE--e-------------cCEEEeEecCCCCCceECCEEEEEEeCCC---
Confidence 888999999999999863 57899999999 2 24466666667899999999999998532
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEechhhhccc-CC--ceEEEEEEEEcCCCCcceE-------EEEEEEEe
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF-NG--AVRFVRYQIRTGHGKPNGV-------LSFCYKLK 144 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~-~g--~~~~vsy~L~~~~GK~~G~-------L~Lsl~f~ 144 (281)
..|.|+|+|++ +++|++||++.|+|.++.... .+ ....++|.+...+|+..|+ +.+.++|.
T Consensus 61 --~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~~ 131 (131)
T 2cjt_A 61 --LGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE 131 (131)
T ss_dssp --SEEEEEEEECC-SSCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEEC
T ss_pred --CeEEEEEEECC-CCCCCeEEEEEEEHHHhhhcCCCCccccEEcccccccCCCcCcceECCCccEEEEEEEeC
Confidence 37999999999 889999999999999987643 22 2345567777678887776 88888873
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-21 Score=153.95 Aligned_cols=119 Identities=13% Similarity=0.168 Sum_probs=96.5
Q ss_pred ceEEEEEEEeecCCCCC---CCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccC
Q 040877 3 WSTLELKVNSCSDLKAF---NLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDN 79 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~---~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~ 79 (281)
.+.|+|+|++|+||+.. +.+++.||||+|++.+... +++||++++ ++.||+|||+|.|.+....
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~----------~~~kT~v~~-~t~nP~wne~f~f~v~~~~-- 68 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPD----------SRKRTRHFN-NDINPVWNETFEFILDPNQ-- 68 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTT----------CCEECCCCT-TCSSCEEEEEEEEEECTTS--
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCC----------ceEEccccC-CCCCCcccceEEEEecCCC--
Confidence 57899999999999984 5678999999999976421 588999987 5899999999999996432
Q ss_pred CCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEE
Q 040877 80 CNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKL 143 (281)
Q Consensus 80 ~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f 143 (281)
...|.|+|||++.+ +|++||++.|+|.+|..+. ....||+|.. +..|.|+|+++.
T Consensus 69 --~~~l~i~V~d~d~~-~~~~iG~~~i~l~~l~~~~---~~~~~~~L~~---~~~g~i~~~le~ 123 (126)
T 1rlw_A 69 --ENVLEITLMDANYV-MDETLGTATFTVSSMKVGE---KKEVPFIFNQ---VTEMVLEMSLEV 123 (126)
T ss_dssp --CCEEEEEEEECCSS-CCEEEEEEEEEGGGSCTTC---EEEEEEEETT---TEEEEEEEEEEC
T ss_pred --CCEEEEEEEECCCC-CCceeEEEEEEHHHccCCC---cEEEEEEcCC---CceEEEEEEEEe
Confidence 24899999999976 6999999999999997653 4567888743 566777777654
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-20 Score=149.74 Aligned_cols=111 Identities=20% Similarity=0.185 Sum_probs=90.4
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEE-eccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFD-IKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~-V~~~~~~~~ 81 (281)
.+.|+|+|++|+||+. +..++.||||+|++.++..+ ..++||++++ ++.||+|||+|.|. +.......
T Consensus 19 ~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~--------~~~~kT~v~~-~t~nP~wnE~f~f~~v~~~~l~~- 87 (134)
T 2b3r_A 19 NGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHK--------TSKRKTKISR-KTRNPTFNEMLVYSGYSKETLRQ- 87 (134)
T ss_dssp TTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSS--------CCCEECCCCC-SCSSCEEEEEEEEESCCHHHHTT-
T ss_pred CCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCC--------CceecCCcCc-CCCCCCCccEEEECCcCHHHhCc-
Confidence 4689999999999997 66789999999999754221 1688999987 59999999999999 76432222
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
..|.|+|||++.+++|++||++.|+|.++..+. ....||+|..
T Consensus 88 -~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~---~~~~W~~L~~ 130 (134)
T 2b3r_A 88 -RELQLSVLSAESLRENFFLGGITLPLKDFNLSK---ETVKWYQLTA 130 (134)
T ss_dssp -CEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTS---CEEEEEECBC
T ss_pred -CEEEEEEEECCCCCCCcEEEEEEEEhhhccCCC---CcceeEECCC
Confidence 489999999998888999999999999997653 3467888864
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=149.54 Aligned_cols=110 Identities=16% Similarity=0.225 Sum_probs=92.3
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+..+.+++.||||+|++.++..+. .++||+++++ +.||+|||+|.|.+..... .
T Consensus 30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~--------~~~kT~v~~~-t~nP~wne~f~f~v~~~~~---~ 97 (149)
T 1a25_A 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSE--------SKQKTKTIKC-SLNPEWNETFRFQLKESDK---D 97 (149)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCS--------SCEECCCCSS-CSSCEEEEEEEEECCSGGG---G
T ss_pred CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCc--------ceEecceeCC-CCCCcCCcEEEEEeccccC---C
Confidence 36799999999999999989999999999998643211 6889999875 9999999999999975322 1
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
..|.|+|||++.+++|++||++.|+|.+|..+. ...||.|..
T Consensus 98 ~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~----~~~W~~L~~ 139 (149)
T 1a25_A 98 RRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG----VDGWFKLLS 139 (149)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEEHHHHTTCC----EEEEEECBC
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEEHHHhCcCc----cCCeEEccC
Confidence 379999999998888999999999999998752 456888865
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=7e-20 Score=149.52 Aligned_cols=111 Identities=16% Similarity=0.220 Sum_probs=91.6
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEecc-CccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKA-FVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~-~~~~~~ 81 (281)
.+.|+|+|++|+||+..+..++.||||+|++.++.. +++||++++ ++.||+|||+|.|.+.. ....
T Consensus 25 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~----------~~~kT~v~~-~t~nP~wne~f~f~~~~~~~~~-- 91 (141)
T 2d8k_A 25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKK----------HKLETKVKR-KNLNPHWNETFLFEGFPYEKVV-- 91 (141)
T ss_dssp SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCS----------SEEECCCCT-TCSSCCCCEEEEECSCCHHHHT--
T ss_pred CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCC----------ccEeCceEc-CCCCCccccEEEECccCHHHcc--
Confidence 478999999999999999889999999999975421 588999976 69999999999999632 1111
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG 129 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~ 129 (281)
...|+|+|+|++.+++|++||++.|+|.+|..+. ....||.|...
T Consensus 92 ~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~---~~~~W~~L~~~ 136 (141)
T 2d8k_A 92 QRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQ---MQTFWKDLKPS 136 (141)
T ss_dssp TSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTS---CEEEEECCEEC
T ss_pred cCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCC---CccEEEECcCC
Confidence 2489999999998888999999999999998753 35678888753
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=149.80 Aligned_cols=114 Identities=13% Similarity=0.202 Sum_probs=93.0
Q ss_pred ceEEEEEEEeecCCCCCC-CCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFN-LFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~-~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
.+.|+|+|++|+||+..+ ..++.||||+|.+.++... ..++||++++ ++.||+|||+|.|.+......
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~--------~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~-- 90 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSR--------QGKRKTSIKR-DTVNPLYDETLRYEIPESLLA-- 90 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSG--------GGEEECCCCS-SCSSCEEEEEEEEECCSTTGG--
T ss_pred CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcc--------cCccccccCC-CCCCCcEeeEEEEEeChhHhC--
Confidence 468999999999999887 5789999999999865321 1588999976 589999999999999754322
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCC
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGH 130 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~ 130 (281)
...|.|+|||.+.+++|++||++.|+|.++..+. ....||+|....
T Consensus 91 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~---~~~~W~~L~~~~ 136 (148)
T 3fdw_A 91 QRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDK---KLDHCLPLHGKI 136 (148)
T ss_dssp GCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHC---CSEEEEECBCC-
T ss_pred ceEEEEEEEECCCCcCCcEEEEEEEEcccccccC---CccceEECcCcc
Confidence 2479999999998888999999999999998754 235788887643
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=147.67 Aligned_cols=111 Identities=17% Similarity=0.186 Sum_probs=89.9
Q ss_pred ceEEEEEEEeecCCCCCCCC-CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEE-eccCccCC
Q 040877 3 WSTLELKVNSCSDLKAFNLF-NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFD-IKAFVDNC 80 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~-gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~-V~~~~~~~ 80 (281)
.+.|+|+|++|+||+..+.+ ++.||||+|++.++.. +++||++++ ++.||+|||+|.|. +......
T Consensus 21 ~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~----------~~~kT~v~~-~t~nP~wne~f~f~~v~~~~~~- 88 (138)
T 1ugk_A 21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKK----------HKVKTRVLR-KTLDPAFDETFTFYGIPYTQIQ- 88 (138)
T ss_dssp GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTC----------SEEECCCCS-SCSSCEEEEEEEEECCCSTTGG-
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCC----------ceEecCcCc-CCCCCcEeeEEEEcCcCHHHhc-
Confidence 46899999999999999886 8999999999986421 588999987 69999999999996 6543222
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
...|.|+|||++.+++|++||++.|+|.+|..+.. ....|+.|..
T Consensus 89 -~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~--~~~~~~~l~~ 133 (138)
T 1ugk_A 89 -ELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEG--KMLMNREIIS 133 (138)
T ss_dssp -GCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTC--CEEEEEECBS
T ss_pred -cCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCC--cchhhhhhhc
Confidence 24899999999988889999999999999987542 2345666654
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=149.82 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=91.2
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+..+.+++.||||+|++.++.. +++||+++++ +.||+|||+|.|.+...... .
T Consensus 41 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~----------~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~--~ 107 (152)
T 1rsy_A 41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK----------KKFETKVHRK-TLNPVFNEQFTFKVPYSELG--G 107 (152)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCC----------SCEECCCCTT-CSSCEEEEEEEECCCHHHHT--T
T ss_pred CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCC----------ceEeccccCC-CCCCcCcccEEEeecHHHcC--C
Confidence 468999999999999999889999999999975421 5789999874 89999999999998743221 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
..|.|+|||++.+++|++||++.|+|.++..+. ....||+|..
T Consensus 108 ~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~---~~~~W~~L~~ 150 (152)
T 1rsy_A 108 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH---VTEEWRDLQS 150 (152)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSS---CEEEEEECBC
T ss_pred CEEEEEEEECCCCCCCcEEEEEEEEchhccCCC---CcceEEECCC
Confidence 489999999998888999999999999997653 3467888754
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=147.69 Aligned_cols=111 Identities=19% Similarity=0.240 Sum_probs=89.8
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEE-eccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFD-IKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~-V~~~~~~~~ 81 (281)
.+.|+|+|++|++|+..+..++.||||+|++.++..+. .++||++++ ++.||+|||+|.|. +......
T Consensus 28 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~--------~~~kT~v~~-~t~nP~wne~f~f~~~~~~~~~-- 96 (142)
T 2chd_A 28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKS--------NKLRTKTLR-NTRNPVWNETLQYHGITEEDMQ-- 96 (142)
T ss_dssp GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGG--------GEEECCCCC-SCSSCEEEEEEEEESCCHHHHH--
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCc--------ceeeCCcCC-CCCCCcCcCEEEEcccCHHHcc--
Confidence 46899999999999999988999999999998643221 688999987 59999999999999 6532211
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIR 127 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~ 127 (281)
...|+|+|||++.+++|++||++.|+|.+|..+. ....++.|.
T Consensus 97 ~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~---~~~~~~~L~ 139 (142)
T 2chd_A 97 RKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQ---RKNFNICLE 139 (142)
T ss_dssp HCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTC---CEEEEEECB
T ss_pred CCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCC---ccEEEEecc
Confidence 1489999999998888999999999999998753 345555553
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-20 Score=149.14 Aligned_cols=118 Identities=14% Similarity=0.212 Sum_probs=93.4
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEe-ccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDI-KAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V-~~~~~~~~ 81 (281)
.+.|+|+|++|+||+..+..++.||||+|++.++... .+++||+++++ +.||+|||+|.|.+ ....+.
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--------~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~~-- 88 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSD--------KNKRRTKTVKK-TLEPKWNQTFIYSPVHRREFR-- 88 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSS--------SSCCBCCCCSS-CSSCCCCCCCEECSCCTTGGG--
T ss_pred CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCC--------CcceeCccccC-CCCCccccEEEEccCCHHHhc--
Confidence 4689999999999999998899999999999654211 16889999875 99999999999995 322222
Q ss_pred ceEEEEEEEECCccCC--CeeeEEEEEechhhhcccCCceEEEEEEEEcC-CCCcce
Q 040877 82 HLFIAFDLYSEGVIYG--YRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG-HGKPNG 135 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~g--Dk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~-~GK~~G 135 (281)
...|.|+|||++.++. |++||++.|+|.++.... ...||.|... +|+..|
T Consensus 89 ~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~----~~~W~~L~~~~~g~~sg 141 (141)
T 1v27_A 89 ERMLEITLWDQARVREEESEFLGEILIELETALLDD----EPHWYKLQTHDSGPSSG 141 (141)
T ss_dssp TCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS----EEEEEECBCCSSCCCCC
T ss_pred CCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC----CCceEECcccccCCCCC
Confidence 2489999999998776 999999999999987532 4678998754 455444
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=151.06 Aligned_cols=121 Identities=17% Similarity=0.110 Sum_probs=94.4
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|.|+|++|+||+..+ .++.||||+|.+.++.... .++||++++ ++.||+|||+|.|.+......
T Consensus 26 ~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~--------~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~--- 92 (153)
T 3fbk_A 26 DRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRL--------RHQKTQTVP-DCRDPAFHEHFFFPVQEEDDQ--- 92 (153)
T ss_dssp SSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCT--------TCEECCCCT-TCSSCEEEEEEEEECCGGGTT---
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCc--------cEEeccccC-CCCCCccccEEEEecccHHhC---
Confidence 578999999999999988 6899999999997653221 688999987 699999999999999643321
Q ss_pred eEEEEEEEECCccCC-CeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEE
Q 040877 83 LFIAFDLYSEGVIYG-YRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLS 138 (281)
Q Consensus 83 ~~L~~eV~d~~~~~g-Dk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~ 138 (281)
..|.|+|||.+.+++ |++||++.|+|.+|.... .....||.|........+.|.
T Consensus 93 ~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~--~~~~~W~~L~~~~~g~~~~lk 147 (153)
T 3fbk_A 93 KRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPD--KEISGWYYLLGEHLGRTKHLK 147 (153)
T ss_dssp SEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC----CCEEEEEECBCTTGGGTCCCB
T ss_pred CEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCC--CccccEEECCChhhcccccce
Confidence 259999999998776 999999999999997521 234679999765433334333
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=148.21 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=90.5
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|++|+..+..++.||||+|.+.++.. +++||++++ ++.||+|||+|.|.+.......
T Consensus 33 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~----------~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~~-- 99 (143)
T 3f04_A 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK----------KKFETKVHR-KTLNPVFNEQFTFKVPYSELGG-- 99 (143)
T ss_dssp TTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCS----------CCEECCCCC-SCSSCEEEEEEEECCCHHHHTT--
T ss_pred CCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCC----------ccEECccCc-CCCCCcCcCeEEEeecHhhcCC--
Confidence 468999999999999998889999999999975421 578999976 5899999999999987432222
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEE
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIR 127 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~ 127 (281)
..|+|+|||++.+++|++||++.|+|.++..+. ....||+|.
T Consensus 100 ~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~---~~~~W~~L~ 141 (143)
T 3f04_A 100 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH---VTEEWRDLQ 141 (143)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTS---CEEEEEECB
T ss_pred CEEEEEEEeCCCCCCCceEEEEEEEHHHccCCC---CcceEEECc
Confidence 489999999998888999999999999997653 345777764
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=143.81 Aligned_cols=109 Identities=13% Similarity=0.181 Sum_probs=84.4
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEecc-CccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKA-FVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~-~~~~~~ 81 (281)
.+.|+|+|++|+||+..+.+++.||||+|++.++.... .++||++++ ++.||+|||+|.|.+.. ....
T Consensus 17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~--------~~~kT~v~~-~t~nP~wne~f~f~~~~~~~~~-- 85 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDK--------NKRRTKTVK-KTLEPKWNQTFIYSPVHRREFR-- 85 (129)
T ss_dssp TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGG--------GEEECCCCS-SBSSCEEEEEEEECSCCGGGGG--
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCC--------cceeccccc-CCCCCccccEEEEccCCHHHhc--
Confidence 46899999999999999988999999999997643211 689999987 58999999999999632 2111
Q ss_pred ceEEEEEEEECCccCC--CeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYG--YRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~g--Dk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
...|.|+|+|++.+++ |++||++.|+|.++.... ...||+|
T Consensus 86 ~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~----~~~W~~L 128 (129)
T 2bwq_A 86 ERMLEITLWDQARVREEESEFLGEILIELETALLDD----EPHWYKL 128 (129)
T ss_dssp GCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS----CEEEEEC
T ss_pred CCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc----CCccEEC
Confidence 2489999999998776 999999999999987642 3567765
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-19 Score=152.72 Aligned_cols=118 Identities=17% Similarity=0.268 Sum_probs=92.3
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|.|+|++|++|. ..+++||||+|+ + ++.||+++++++.||+|||+|.|.+....
T Consensus 13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~-------------~~~kt~~~~~~t~nP~WnE~f~f~v~~~~----- 69 (167)
T 2cjs_A 13 LSLLCVGVKKAKFDG---AQEKFNTYVTLK--V-------------QNVESTTIAVRGSQPSWEQDFMFEINRLD----- 69 (167)
T ss_dssp CCEEEEEEEEEECSS---CGGGCEEEEEEE--E-------------TTEEEECCCEESSSCEEEEEEEEECCCTT-----
T ss_pred eEEEEEEEEEEECCC---CCCCCCeEEEEE--e-------------cceEEEEecCCCCCCCCCCEEEEEeeCCC-----
Confidence 358999999999885 268899999999 3 34567777667899999999999998532
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccC-C--ceEEEEEEEEcCCCCcceE-------EEEEEEEe
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFN-G--AVRFVRYQIRTGHGKPNGV-------LSFCYKLK 144 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~-g--~~~~vsy~L~~~~GK~~G~-------L~Lsl~f~ 144 (281)
..|.|+|||++ +.+|++||++.|+|.++..... + .....+|.+...+|+..|+ |.+.++|.
T Consensus 70 ~~L~~~V~D~d-~~~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e 140 (167)
T 2cjs_A 70 LGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE 140 (167)
T ss_dssp SEEEEEEEECC-SSCCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE
T ss_pred CEEEEEEEECC-CCCCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEee
Confidence 37999999999 8899999999999999876431 2 2445677777677876665 55666664
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-19 Score=144.76 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=85.0
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+..+..++.||||+|++.++..+ ..++||++++ ++.||+|||+|.|.+...... .
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--------~~~~kT~~~~-~t~nP~wne~f~f~v~~~~l~--~ 83 (138)
T 3n5a_A 15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKR--------VEKKKTVTKK-RNLNPIFNESFAFDIPTEKLR--E 83 (138)
T ss_dssp TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEE--------EEEEECCCCS-SCSSCEEEEEEEEECCGGGGG--G
T ss_pred CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCc--------cceEeCcccc-CCCCCcCcceEEEECChhhcC--c
Confidence 4789999999999999998899999999999865322 1578999987 589999999999999754322 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDE 114 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g 114 (281)
..|.|+|+|.+.+++|++||++.|+|.++..+
T Consensus 84 ~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~~~ 115 (138)
T 3n5a_A 84 TTIIITVMDKDKLSRNDVIGKIYLSWKSGPGE 115 (138)
T ss_dssp EEEEEEEEECCSSSCCEEEEEEEESSSSCHHH
T ss_pred eEEEEEEEECCCCCCCcEEEEEEEccccCChH
Confidence 58999999999888899999999999976543
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=7e-20 Score=154.31 Aligned_cols=113 Identities=10% Similarity=0.026 Sum_probs=91.0
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+..+..++.||||+|.+.+...++ + .++||++++ ++.||+|||+|.|.|....+. .
T Consensus 42 ~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~---~----~~~kT~v~~-~tlnP~wnE~F~f~v~~~~l~--~ 111 (155)
T 2z0u_A 42 NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSEST---T----CLFRTRPLD-ASDTLVFNEVFWVSMSYPALH--Q 111 (155)
T ss_dssp TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHH---H----HEEECCCEE-CCSSEEEEEEEEEECCHHHHH--H
T ss_pred CCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCC---c----cceeCCcCC-CCCCCccccEEEEEcCHHHhC--c
Confidence 46899999999999999989999999999998632211 1 478999987 589999999999999753322 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEE
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIR 127 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~ 127 (281)
..|+|+|||++.+++|++||++.|+|.++.... .....||.|.
T Consensus 112 ~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~--~~~~~W~~L~ 154 (155)
T 2z0u_A 112 KTLRVDVCTTDRSHLEECLGGAQISLAEVCRSG--ERSTRWYNLL 154 (155)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEEECTTSCTTC--CCEEEEEEEB
T ss_pred CEEEEEEEECCCCCCCcEEEEEEEEHHHccCCC--CccccceEcc
Confidence 489999999998889999999999999996422 2345678774
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-19 Score=149.97 Aligned_cols=118 Identities=12% Similarity=0.211 Sum_probs=102.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|.||+ ++.||||+|.+.+ .++||+++++++.||+|||+|+|++....+.. .+
T Consensus 22 sL~V~l~~a~~Lp-----g~~Dp~akv~FRg-------------~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~--e~ 81 (144)
T 3l9b_A 22 ALIVHLKTVSELR-----GRADRIAKVTFRG-------------QSFYSRVLENCEDVADFDETFRWPVASSIDRN--EV 81 (144)
T ss_dssp EEEEEEEEEESCC-----SCEEEEEEEEETT-------------EEEECCCEEEECSCEEEEEEEEEEESSCCCTT--CE
T ss_pred EEEEEEEEecCCC-----CCCCCeEEEEEec-------------cceeeEEeccCCCCceEcceEEecCCCCCCCC--CE
Confidence 6999999999999 5899999999965 58999999867999999999999999754433 59
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcc-eEEEEEEEEee
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPN-GVLSFCYKLKG 145 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~-G~L~Lsl~f~p 145 (281)
|.|+|++.+++++|++||++.|+|.+|..+. ...++-.|.+.++++- ++|.|++++.|
T Consensus 82 L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~---~l~l~~~LvD~n~~~~~a~I~l~l~Y~p 140 (144)
T 3l9b_A 82 LEIQIFNYSKVFSNKLIGTFRMVLQKVVEEN---RVEVSDTLIDDNNAIIKTSLSMEVRYQA 140 (144)
T ss_dssp EEEEEEEECTTSCCEEEEEEEEESHHHHHHS---EEEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred EEEEEEECccccCCCEEEEEEEEhHHhccCC---eEEEeecccCCCCCccccEEEEEEEecC
Confidence 9999999999999999999999999999874 2346778889888855 69999999988
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=6e-19 Score=158.75 Aligned_cols=127 Identities=15% Similarity=0.174 Sum_probs=104.7
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||...+..++.||||+|.+.++.. ++.||++++ ++.||+|||+|.|.+...... .
T Consensus 18 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~----------~~~~T~~~~-~~~nP~wne~f~f~v~~~~~~--~ 84 (284)
T 2r83_A 18 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK----------KKFETKVHR-KTLNPVFNEQFTFKVPYSELA--G 84 (284)
T ss_dssp TTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTT----------SCEECCCCC-SCSSCEEEEEEEECCCGGGCT--T
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCC----------ceEeCCccc-CCCCCeeCceEEEEechHHhC--c
Confidence 478999999999999999889999999999976421 578999987 489999999999998753222 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCC---CcceEEEEEEEEee
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHG---KPNGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~G---K~~G~L~Lsl~f~p 145 (281)
..|+|+|+|.+.++.|++||++.|+|.++..+. ....||.|....+ ...|.|.+++++.+
T Consensus 85 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~---~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p 147 (284)
T 2r83_A 85 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH---VTEEWRDLQSAEKEEQEKLGDICFSLRYVP 147 (284)
T ss_dssp CEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSS---CEEEEEECBCCSSCCCCCCCEEEEEEEEET
T ss_pred CEEEEEEEECCCCCCCceeEEEEEcchhcccCC---cceeEEEeeccccccccccccEEEEEEecC
Confidence 489999999998888999999999999997653 3467888876532 36799999999875
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.5e-20 Score=149.64 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=92.7
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+..+..+ .||||+|++.++..+ ..++||++++ ++.||+|||+|.|.+...... .
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~--------~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~--~ 90 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRR--------SGRRKTHVSK-KTLNPVFDQSFDFSVSLPEVQ--R 90 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCS--------SSCEECCCCC-SCSSCEEEEEEEECCCHHHHH--H
T ss_pred CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCC--------CCcccCCccC-CCCCCCcCceEEEEecHHHhC--c
Confidence 468999999999999998888 999999999764321 1588999987 599999999999998643221 2
Q ss_pred eEEEEEEEECCccCC--CeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcce
Q 040877 83 LFIAFDLYSEGVIYG--YRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNG 135 (281)
Q Consensus 83 ~~L~~eV~d~~~~~g--Dk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G 135 (281)
..|.|+|||++.++. |++||++.|+|.++..+. ....||.|....++..|
T Consensus 91 ~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~---~~~~W~~L~~~~~~~~G 142 (142)
T 2dmg_A 91 RTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAK---GWTQWYDLTEDSGPSSG 142 (142)
T ss_dssp CEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTT---CBCCBCCCBCSCSCCCC
T ss_pred CEEEEEEEECCCccccCCcEEEEEEEecccccccc---cccceeeccCCCCCCCC
Confidence 389999999998753 579999999999987643 23458888775555444
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.5e-19 Score=147.21 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=83.9
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+..+.+++.||||+|.+.++..+ ..++||++++ ++.||+|||+|.|.+...... .
T Consensus 36 ~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~--------~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~--~ 104 (166)
T 2cm5_A 36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGK--------KAKHKTQIKK-KTLNPEFNEEFFYDIKHSDLA--K 104 (166)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC-----------CCEEECCCCC-SCSSCEEEEEEEEECCGGGGG--G
T ss_pred CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCc--------cceEeCCccc-CCCCCcccceEEEEcchHhcC--C
Confidence 4789999999999999998899999999999875321 1688999986 599999999999999753322 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLID 113 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~ 113 (281)
..|.|+|+|++.+++|++||++.|+|.++..
T Consensus 105 ~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~ 135 (166)
T 2cm5_A 105 KSLDISVWDYDIGKSNDYIGGCQLGISAKGE 135 (166)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEETTCCHH
T ss_pred CEEEEEEEECCCCCCCcEEEeEEEecccCCc
Confidence 4899999999988889999999999998654
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.7e-19 Score=145.66 Aligned_cols=114 Identities=15% Similarity=0.188 Sum_probs=90.9
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+..+.+++.||||+|++.++..+ ..++||++++ ++.||+|||+|.|.+...... .
T Consensus 24 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~--------~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~--~ 92 (159)
T 1tjx_A 24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKR--------LKKKKTTIKK-NTLNPYYNESFSFEVPFEQIQ--K 92 (159)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEE--------EEEEECCCCC-SCSSCEEEEEEEEECCGGGGG--G
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCce--------eceeeCceec-CCCCCcccceEEEEcCHHHhC--C
Confidence 4689999999999999998899999999999864321 1578999976 599999999999999753322 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhh----------hcccCCceEEEEEEEEc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDL----------IDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL----------~~g~~g~~~~vsy~L~~ 128 (281)
..|.|+|+|.+.+++|++||++.|+|.++ +.. .+.....||.|..
T Consensus 93 ~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~-~~~~~~~W~~L~~ 147 (159)
T 1tjx_A 93 VQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLAN-PRRPIAQWHTLQV 147 (159)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHS-TTCCEEEEEECBC
T ss_pred cEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHC-CCCeeeeEEECcC
Confidence 48999999999888899999999999954 322 1234567888764
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-19 Score=147.30 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=86.7
Q ss_pred ceEEEEEEEeecCCCCC-------CCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEecc
Q 040877 3 WSTLELKVNSCSDLKAF-------NLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKA 75 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~-------~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~ 75 (281)
.+.|+|+|++|+||+.. +.+++.||||+|++.++.. +++||++++ ++.||+|||+|.|.+..
T Consensus 25 ~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~----------~~~kT~v~~-~t~nP~wne~f~f~v~~ 93 (147)
T 2enp_A 25 HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQK----------NSKQTGVKR-KTQKPVFEERYTFEIPF 93 (147)
T ss_dssp TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCS----------SCEECCCCC-SCSSCCCCBCCEECCCH
T ss_pred CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCC----------cceEeeccc-CCCCCeEeeeEEEEeCh
Confidence 46899999999999974 3356899999999986421 578999976 59999999999999874
Q ss_pred CccCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEE
Q 040877 76 FVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIR 127 (281)
Q Consensus 76 ~~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~ 127 (281)
.... ...|+|+|||++.+++|++||++.|+|.+|..+.. ...||.|.
T Consensus 94 ~~l~--~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~---~~~w~~L~ 140 (147)
T 2enp_A 94 LEAQ--RRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKG---GHWWKALI 140 (147)
T ss_dssp HHHH--HSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTC---CCEEECCB
T ss_pred HHhc--cCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCC---ccEEEEee
Confidence 3221 13899999999988889999999999999976432 24566664
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=144.35 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=77.2
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+..+..++.||||+|.+.++..+ ..++||++++ ++.||+|||+|.|.+...... .
T Consensus 29 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--------~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~--~ 97 (153)
T 1w15_A 29 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKR--------ISKKKTHVKK-CTPNAVFNELFVFDIPCESLE--E 97 (153)
T ss_dssp TTEEEEEEEEEESCC------CCCEEEEEEEEETTEE--------EEEEECCCCC-SCSSEEEEEEEEEECCSSSST--T
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeE--------eceEecCccc-CCCCCeecceEEEECCHHHhC--c
Confidence 4689999999999999998899999999999764221 1477999987 499999999999999754332 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechh
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKD 110 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~d 110 (281)
..|.|+|+|++.+++|++||++.|+|.+
T Consensus 98 ~~l~v~V~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 98 ISVEFLVLDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp EEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred eEEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence 5899999999988889999999999998
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-19 Score=148.17 Aligned_cols=121 Identities=14% Similarity=0.141 Sum_probs=90.5
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhh-hhccccceEEeeecCCCCCCCeeceEEEEE-eccCccCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKE-QRQTCLQRQKTPTDREGGGNPEWNHMMKFD-IKAFVDNC 80 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~-~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~-V~~~~~~~ 80 (281)
.+.|+|+|++|+||+..+.+++.||||+|++.+......- +......++||++++ ++.||+|||+|.|. +......
T Consensus 17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~v~~~~l~- 94 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ-KSLNPEWNQTVIYKSISMEQLM- 94 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTH-HHHSCEEEEEEEECSCCHHHHT-
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccC-CCCCCCCCCEEEECCcCHHHcc-
Confidence 3689999999999999998999999999999764210000 000000357899987 48999999999997 6532211
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG 129 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~ 129 (281)
...|.|+|||++.+++|++||++.|+|.++..+.. ...||+|...
T Consensus 95 -~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~---~~~W~~L~~~ 139 (142)
T 1rh8_A 95 -KKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN---TPRWYPLKEQ 139 (142)
T ss_dssp -TCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTT---CCEEEECBCC
T ss_pred -CCEEEEEEEECCCCCCCceEEEEEEeccccccCCC---CCeEEECCcc
Confidence 24899999999988889999999999999976532 3468888654
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.8e-19 Score=148.65 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=90.0
Q ss_pred ceEEEEEEEeecCCCCCCC-CCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNL-FNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~-~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
.+.|+|+|++|+||+..+. +++.||||+|.+.++... ..++||++++ ++.||+|||+|.|.+...
T Consensus 29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~--------~~~~kT~v~~-~t~nP~wne~f~f~v~~~----- 94 (171)
T 2q3x_A 29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGAC--------IAKKKTRIAR-KTLDPLYQQSLVFDESPQ----- 94 (171)
T ss_dssp TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEE--------EEEEECCCCC-SCSSCEEEEEEECSSCCT-----
T ss_pred CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCcc--------ccceeCccCC-CCCCCCCCcEEEEEecCC-----
Confidence 4689999999999999885 699999999999874221 1478999986 589999999999998632
Q ss_pred ceEEEEEEE-ECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC
Q 040877 82 HLFIAFDLY-SEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG 129 (281)
Q Consensus 82 ~~~L~~eV~-d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~ 129 (281)
...|.|+|| |++.+++|++||++.|+|.++..+. ....||.|...
T Consensus 95 ~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~---~~~~W~~L~~~ 140 (171)
T 2q3x_A 95 GKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSS---MVIGWYKLFPP 140 (171)
T ss_dssp TEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTS---CEEEEEECBCG
T ss_pred CCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCC---CcceeEECCCc
Confidence 258999999 9998888999999999999997543 34678998764
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.2e-18 Score=171.02 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=104.2
Q ss_pred ceEEEEEEEeecCCCCCCC--CCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCC
Q 040877 3 WSTLELKVNSCSDLKAFNL--FNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNC 80 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~--~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~ 80 (281)
.+.|+|+|++|++|+..+. .++.||||+|++.+.+.+. .++||++++++|.||+|||+|.|.|....
T Consensus 496 ~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~--------~~~kTkvi~~ng~NP~WnE~f~F~v~~~e--- 564 (624)
T 1djx_A 496 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDT--------GSRQTAVITNNGFNPRWDMEFEFEVTVPD--- 564 (624)
T ss_dssp CEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGC--------EEEECCCCTTCSSSCEEEEEEEEEESCGG---
T ss_pred ceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCc--------ceeecccccCCCCCCccCceEEEEEecCC---
Confidence 3689999999999998774 6889999999998754332 58899999887899999999999997543
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCc--ceEEEEEEEEe
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKP--NGVLSFCYKLK 144 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~--~G~L~Lsl~f~ 144 (281)
...|+|+|+|++.+++|++||++.|+|.+|..|+ .+++|++..|+. .+.|.+.++|.
T Consensus 565 -l~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G~------r~v~L~d~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 565 -LALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY------RHVHLLSKNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp -GCEEEEEEEECCSSSCCEEEEEEEEEGGGBCCEE------EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred -CCEEEEEEEEcCCCCCCceeEEEEEEHHHcCCCc------EEEeCCCCCcCCCCceEEEEEEEEE
Confidence 2589999999998889999999999999998763 478999988885 46777777664
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=140.47 Aligned_cols=109 Identities=10% Similarity=0.001 Sum_probs=87.1
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|++ .+..++.||||+|.+.++..+ .++||++++ ++.||+|||+|.|.+.......
T Consensus 25 ~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~---------~~~kT~v~~-~tlnP~wnE~f~f~v~~~~l~~-- 89 (138)
T 1wfm_A 25 KAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGS---------VEAQTALKK-RQLHTTWEEGLVLPLAEEELPT-- 89 (138)
T ss_dssp TTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEE---------EEEECCCCC-CCSSEECSSCEEEECCTTSSTT--
T ss_pred CCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCc---------ccEecccCc-CCCCCcCCceEEEEecHHHcCC--
Confidence 4789999999994 566789999999999753111 478999976 5899999999999987543322
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG 129 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~ 129 (281)
..|+|+|||.+.+++|++||++.|+|.++..+. ....||.|...
T Consensus 90 ~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~---~~~~W~~L~~~ 133 (138)
T 1wfm_A 90 ATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPL---GAAQWGELKTS 133 (138)
T ss_dssp CEEEEEEEECCSSCTTSCSEEEEEESSSSSSCT---TCCEEEECCCC
T ss_pred CEEEEEEEECCCCCCCcEEEEEEEEcccccCcc---cccceeeCcCC
Confidence 489999999998888999999999999986432 23568888653
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.2e-18 Score=154.37 Aligned_cols=128 Identities=19% Similarity=0.167 Sum_probs=99.4
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|.|+|++|+||+..+.+++.||||+|.+..+.. +++||++++ ++.||+|||+|.|.+.......
T Consensus 19 ~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~----------~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~~-- 85 (296)
T 1dqv_A 19 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRK----------KKFQTKVHR-KTLNPIFNETFQFSVPLAELAQ-- 85 (296)
T ss_dssp SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTT----------SCEECCCCC-SCSSCEEEEEEEEECCGGGGSS--
T ss_pred CCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCC----------eeEeCCccC-CCCCCcEeeEEEEEecHHHhcC--
Confidence 478999999999999999899999999999964321 578999976 5899999999999997433222
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEe-chhhhcccCCceEEEEEEEEcCC--CCcceEEEEEEEEee
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVP-LKDLIDEFNGAVRFVRYQIRTGH--GKPNGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~Vp-L~dL~~g~~g~~~~vsy~L~~~~--GK~~G~L~Lsl~f~p 145 (281)
..|+|+|||.+.+++|++||++.|+ |.++.+... ....|+.|.... ....|+|.+++.+.+
T Consensus 86 ~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~--~~~~w~~L~~~~~~~~~~G~i~vsl~y~~ 149 (296)
T 1dqv_A 86 RKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPP--DRPLWRDILEGGSEKADLGELNFSLCYLP 149 (296)
T ss_dssp CCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCS--SCCCCEECBCCSSCCSCCCEEEEEEEEET
T ss_pred CEEEEEEEEcCCCCCCceEEEEEeccccccccCCc--cceeeeccccccccccccceEEEEEEecc
Confidence 3799999999988889999999996 555554221 123466665433 335799999998865
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=159.48 Aligned_cols=121 Identities=21% Similarity=0.311 Sum_probs=98.7
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.++|+|+|++|++|+..+.+|+.||||+|.+.+ +++||++++ ++.||+|||+|.|.+.... .
T Consensus 386 ~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~-------------~~~~T~~~~-~t~nP~w~e~f~f~~~~~~----~ 447 (510)
T 3jzy_A 386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGS-------------QSYTTRTIQ-DTLNPKWNFNCQFFIKDLY----Q 447 (510)
T ss_dssp CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT-------------EEEECCCCS-SCSSCEEEEEEEEEESCTT----T
T ss_pred CceEEEEeceeecCCCCCCCCCCCeEEEEEECC-------------eeccCCccC-CCCCCccCceEEEEecCCC----C
Confidence 368999999999999999999999999999954 588999987 4799999999999997432 1
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCC-ceEEEEEEEEcCCCCcceEEEEEEEEe
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNG-AVRFVRYQIRTGHGKPNGVLSFCYKLK 144 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g-~~~~vsy~L~~~~GK~~G~L~Lsl~f~ 144 (281)
..|+|+|||++.+++|++||++.++|.++..+... .....|+.+ .++..|+|+|.+++.
T Consensus 448 ~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l---~~~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 448 DVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLL---HEVPTGEVWVRFDLQ 507 (510)
T ss_dssp CEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEEC---BSSSSCEEEEEEEEE
T ss_pred CEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecC---CCCCCceEEEEEEEE
Confidence 48999999999888899999999999999875421 112345554 356789998887763
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-16 Score=140.43 Aligned_cols=115 Identities=16% Similarity=0.179 Sum_probs=90.9
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|.|+|++|+||+..+.+++.||||+|++.++..+ ..++||++++ ++.||+|||+|.|.+....+. .
T Consensus 149 ~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~--------~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~--~ 217 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKR--------LKKKKTTIKK-NTLNPYYNESFSFEVPFEQIQ--K 217 (284)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEE--------EEEEECCCCC-SCSSCEEEEEEEEECCTTTGG--G
T ss_pred CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcE--------eeeeccceec-CCCCCEEceeEEEeCCHHHhC--c
Confidence 4689999999999999998899999999999764321 1478999976 589999999999999754322 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhccc---------CCceEEEEEEEEc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF---------NGAVRFVRYQIRT 128 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~---------~g~~~~vsy~L~~ 128 (281)
..|.|+|+|.+.+++|++||++.|+|..+..+. .+.....||.|..
T Consensus 218 ~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~ 272 (284)
T 2r83_A 218 VQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 272 (284)
T ss_dssp EEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred eEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence 589999999998888999999999998643321 1233467888764
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-16 Score=155.45 Aligned_cols=112 Identities=15% Similarity=0.186 Sum_probs=90.7
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+. |.+++.||||+|.+.+ ++.||+|+++ +.||+|||+|.|.+..... .
T Consensus 393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~-------------~~~kTkvik~-tlNP~Wne~f~f~~~~~~~---~ 454 (540)
T 3nsj_A 393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGG-------------QEFRTGVVWN-NNNPRWTDKMDFENVLLST---G 454 (540)
T ss_dssp EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETT-------------EEEECCCBCS-CSSCBCCCCEEEEEEETTT---C
T ss_pred ccEEEEEEEEccCCCc-ccCCCcCeEEEEEECC-------------EeeeeeeecC-CCCCCCCeEEEEEEecCCC---C
Confidence 3689999999999998 9899999999999965 4789999874 8999999999998753221 1
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
..|+|+|||+|.+..|++||++.++|.. | . ...++.| .+|.|+|++++.=
T Consensus 455 ~~L~~~V~D~D~~~~dD~LG~~~~~L~~---g---~-~~~~~~l------~~G~l~~~~~~~c 504 (540)
T 3nsj_A 455 GPLRVQVWDADYGWDDDLLGSCDRSPHS---G---F-HEVTCEL------NHGRVKFSYHAKC 504 (540)
T ss_dssp CCEEEEEEECCSSSCCEEEEEEEECCCS---E---E-EEEEEEC------SSSEEEEEEEEEE
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEEeeC---C---c-EEEEEEc------CCeEEEEEEEEEE
Confidence 3799999999988889999999999972 2 2 3345543 4689999988654
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.2e-15 Score=154.80 Aligned_cols=117 Identities=17% Similarity=0.267 Sum_probs=95.1
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeece-EEEEE-eccCccCCC
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNH-MMKFD-IKAFVDNCN 81 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNE-tf~F~-V~~~~~~~~ 81 (281)
.+|+|+||+|++|... +.||||+|.|.+.+.+. ..++||+|++++|.||+||| +|.|. |....
T Consensus 725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~-------~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pe---- 789 (885)
T 3ohm_B 725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDT-------RRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPT---- 789 (885)
T ss_dssp EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTC-------BCCCCCCCCSSCSSSCBCCCCCEEEEEESCGG----
T ss_pred eEEEEEEEEeccCccc----CCCcEEEEEEeCCCccc-------ccceeeEEeeCCCcCCeeccceeEEeeEEcCC----
Confidence 4799999999999863 68999999998854432 13579999988899999999 69998 65332
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCc--ceEEEEEEEEee
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKP--NGVLSFCYKLKG 145 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~--~G~L~Lsl~f~p 145 (281)
...|+|+|+|++ |++||++.|||.+|..|+ ...+|++..|.. .|.|-+.+.+..
T Consensus 790 la~Lrf~V~D~d----ddfiG~~~lpL~~L~~Gy------R~vpL~~~~g~~l~~atLfv~i~~~~ 845 (885)
T 3ohm_B 790 LASLRIAAFEEG----GKFVGHRILPVSAIRSGY------HYVCLRNEANQPLCLPALLIYTEASD 845 (885)
T ss_dssp GCEEEEEEEETT----TEEEEEEEEETTTCCCEE------EEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred cCEEEEEEEcCC----ccEEeeEEEEHHHcCCCc------eEEEecCCCCCccCceEEEEEEEEEe
Confidence 358999999976 899999999999998874 356889988874 678888777765
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-16 Score=142.69 Aligned_cols=100 Identities=21% Similarity=0.243 Sum_probs=84.1
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+..+..++.||||+|++.++... ..++||++++ ++.||+|||+|.|.|....+. .
T Consensus 151 ~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~--------~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~--~ 219 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRR--------LKKRKTSIKK-NTLNPTYNEALVFDVAPESVE--N 219 (296)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCT--------TSCEECCCCC-SCSSCEEEECCCCCCCSGGGG--S
T ss_pred cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcC--------ccceecceec-CCCCCeECceEEEEcCHHHcc--C
Confidence 4789999999999999998999999999999754221 2578999976 589999999999999854332 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLID 113 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~ 113 (281)
..|.|+|+|.+.+++|++||++.|+|.++..
T Consensus 220 ~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~ 250 (296)
T 1dqv_A 220 VGLSIAVVDYDCIGHNEVIGVCRVGPEAADP 250 (296)
T ss_dssp CCCCCEEEECCSSSCCEEEEECCCSSCTTCH
T ss_pred cEEEEEEEeCCCCCCCceEEEEEECCccCCc
Confidence 4799999999988889999999999998754
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.60 E-value=8.7e-15 Score=151.81 Aligned_cols=116 Identities=18% Similarity=0.240 Sum_probs=92.0
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEee-ecCCCCCCCeece-EEEE-EeccCccC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTP-TDREGGGNPEWNH-MMKF-DIKAFVDN 79 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTk-V~~~gg~NPvWNE-tf~F-~V~~~~~~ 79 (281)
.++|+|+||+|++|++ ++.||||+|.|.+.+.+. .+++||+ +++++|.||+||| +|.| .|....
T Consensus 677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~-------~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~e-- 743 (799)
T 2zkm_X 677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDP-------KRRYRTKLSPSTNSINPVWKEEPFVFEKILMPE-- 743 (799)
T ss_dssp CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSC-------CCCEECCCCSSSCCSSCBCCCCCEEEEEESSGG--
T ss_pred eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCc-------ccceeecccccCCCCCCeeecceEEEEEEccCC--
Confidence 3689999999999985 468999999998754332 1467999 8888899999999 7999 886433
Q ss_pred CCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCc--ceEEEEEEEE
Q 040877 80 CNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKP--NGVLSFCYKL 143 (281)
Q Consensus 80 ~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~--~G~L~Lsl~f 143 (281)
..+|+|+|+|++ |++||++.|||.+|..|+ .+++|++..|.+ .+.|.+.+++
T Consensus 744 --l~~Lr~~V~D~d----~d~iG~~~ipl~~L~~G~------r~v~L~~~~g~~~~~~~Lfv~i~~ 797 (799)
T 2zkm_X 744 --LASLRVAVMEEG----NKFLGHRIIPINALNSGY------HHLCLHSESNMPLTMPALFIFLEM 797 (799)
T ss_dssp --GCEEEEEEEETT----TEEEEEEEEEGGGBCCEE------EEEEEECTTCCEEEEEEEEEEEEE
T ss_pred --ccEEEEEEEEeC----CCccceEeeehhhcCCCc------EEEeccCCCCCCCCceEEEEEEEE
Confidence 358999999976 899999999999998764 467888887773 3566665554
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=150.87 Aligned_cols=118 Identities=18% Similarity=0.200 Sum_probs=93.9
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceE-EEEE-eccCccCCC
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHM-MKFD-IKAFVDNCN 81 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEt-f~F~-V~~~~~~~~ 81 (281)
++|+|+||+|++|.+. +.||||+|+|.+.+.+.. .+++||++++++|.||+|||+ |.|. |....
T Consensus 650 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~------~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pe---- 715 (816)
T 3qr0_A 650 GTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTV------RKKFKTKIIENNGMDPYYDEKVFVFKKVVLPD---- 715 (816)
T ss_dssp EEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCE------EEEEECCCBCSCSSCCBCCCCCEEEEEESCGG----
T ss_pred eEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccc------cceeeeEEecCCCCCCeEcCceeEEccccCCC----
Confidence 6799999999999863 589999999998644320 147799999988999999998 9998 75432
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcc--eEEEEEEEEee
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPN--GVLSFCYKLKG 145 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~--G~L~Lsl~f~p 145 (281)
..+|+|+|+|++ |++||++.|||.+|..|+ ...+|++.+|+.- +.|-+.+.+..
T Consensus 716 la~Lrf~V~D~d----ddfiG~~~ipL~~L~~Gy------R~vpL~~~~g~~~~~atLfv~i~~~~ 771 (816)
T 3qr0_A 716 LAVVRIIVSEEN----GKFIGHRVMPLDGIKPGY------RHVPLRNESNRPLGLASVFAHIVAKD 771 (816)
T ss_dssp GCEEEEEEEETT----SCEEEEEEEESTTCCCEE------EEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred ccEEEEEEEecC----CCeeeEEEEEHHHcCCcc------eEEEEeCCCCCCCCceEEEEEEEEEe
Confidence 358999999974 799999999999998875 3578889888854 56666555554
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-16 Score=154.77 Aligned_cols=119 Identities=16% Similarity=0.206 Sum_probs=19.0
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCC--CCCCCeeceEEEEEeccCccCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDRE--GGGNPEWNHMMKFDIKAFVDNC 80 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~--gg~NPvWNEtf~F~V~~~~~~~ 80 (281)
.+.|+|+|++|+||+..+ ||||++.+++. .+.||++.++ +|.||+|||+|.|.+....
T Consensus 10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~------------~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~--- 69 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPKK-----RYYCELCLDDM------------LYARTTSKPRSASGDTVFWGEHFEFNNLPAV--- 69 (483)
T ss_dssp EECC--------------------------------------------------------------CCEECC--------
T ss_pred ccEEEEEEEEcCCcCCCC-----CCeEEEEECCe------------EEeeeeEEeCCCCCCCCccccEEEEecCCCc---
Confidence 368999999999999876 99999999763 3668888764 2499999999999975321
Q ss_pred CceEEEEEEEEC-C---ccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCC-----------------------C-C
Q 040877 81 NHLFIAFDLYSE-G---VIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGH-----------------------G-K 132 (281)
Q Consensus 81 ~~~~L~~eV~d~-~---~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~-----------------------G-K 132 (281)
..|.|+|||+ + .+.+|++||.+.|+|.++..+. ....||+|.... | +
T Consensus 70 --~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~---~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 144 (483)
T 3bxj_A 70 --RALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRH---FTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKG 144 (483)
T ss_dssp ------------------------------------------CCEECC--------------------------------
T ss_pred --cEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCC---CCCeEEECCCCCCccccccccccccccccccccccCCC
Confidence 3789999995 3 3578999999999999998753 235678885432 1 2
Q ss_pred cceEEEEEEEEeee
Q 040877 133 PNGVLSFCYKLKGM 146 (281)
Q Consensus 133 ~~G~L~Lsl~f~p~ 146 (281)
..|.|+|.++|.+.
T Consensus 145 ~~G~lrL~v~~~~~ 158 (483)
T 3bxj_A 145 GCPAVRLKARYQTM 158 (483)
T ss_dssp ------CEEEEEEC
T ss_pred CCceEEEEEEeeee
Confidence 46899999999873
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5.8e-15 Score=152.13 Aligned_cols=106 Identities=12% Similarity=0.173 Sum_probs=88.6
Q ss_pred ceEEEEEEEeecCCCC---CCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccC
Q 040877 3 WSTLELKVNSCSDLKA---FNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDN 79 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~---~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~ 79 (281)
.+.|+|+|++|++|+. .+..+++||||+|++.+... .++||++++ ++.||+|||+|.|.+....
T Consensus 17 ~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~----------~k~kTkvik-~tlNPvWNEtF~F~v~~~~-- 83 (749)
T 1cjy_A 17 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPD----------SRKRTRHFN-NDINPVWNETFEFILDPNQ-- 83 (749)
T ss_dssp CEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTT----------CCEECCCCT-TCSSCEEEEEEEEEECTTS--
T ss_pred ccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCC----------CeEecceEc-CCCCCeeeeEEEEEecCCC--
Confidence 4789999999999998 77789999999999976421 588999987 5899999999999998532
Q ss_pred CCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEE
Q 040877 80 CNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIR 127 (281)
Q Consensus 80 ~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~ 127 (281)
...|+|+|+|++.++ |++||++.|+|.+|..+. ....|++|.
T Consensus 84 --~~~L~~~V~D~D~~~-ddfIG~v~I~L~~L~~g~---~~~~w~~L~ 125 (749)
T 1cjy_A 84 --ENVLEITLMDANYVM-DETLGTATFTVSSMKVGE---KKEVPFIFN 125 (749)
T ss_dssp --CCBCEEEEEECCSSS-CEEEEEECCBSTTSCTTC---CCCEEEEET
T ss_pred --CCEEEEEEEECCCCC-CceeEEEEEEHHHcCCCC---ceEEEEecC
Confidence 237999999999887 999999999999997654 234677773
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=140.21 Aligned_cols=111 Identities=16% Similarity=0.230 Sum_probs=92.0
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|.|+|++|++|...+.++++||||++.+.++.... .++||+++++ +.||+|||+|.|.+..... .
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~--------~k~kT~v~~~-tlnP~wne~f~f~~~~~~~---~ 238 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSE--------SKQKTKTIKS-SLNPEWNETFRFQLKESDK---D 238 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCC--------SCEECCCCSS-CSSCEEEEEEEEECCSTTT---T
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCcccc--------cccccccccc-ccCCCccceeeeecccCCc---c
Confidence 46799999999999999999999999999997654321 5789999874 7999999999999975432 1
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG 129 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~ 129 (281)
..|.|+|||.+.+++|++||++.++|.++.... ...||.+...
T Consensus 239 ~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~----~~~w~~Lls~ 281 (674)
T 3pfq_A 239 RRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG----VDGWFKLLSQ 281 (674)
T ss_dssp CEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC----EEEEEECBCT
T ss_pred ceeeeEEeecccccccccccccccchhhhccCC----cccceeeccc
Confidence 369999999999889999999999999998753 2557776653
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.3e-08 Score=81.49 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=82.1
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
..|+|.+.+++.-.-.......||||.|.+...-. ..+.||-+.+..+..|+|||.|.-.|.+. -
T Consensus 6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~---------~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G------r 70 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALS---------TERGKTLVQKKPTMYPEWKSTFDAHIYEG------R 70 (126)
T ss_dssp CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEE---------ETTEEEEECCSCCBCCCTTCEEEEECCTT------C
T ss_pred ccEEeeeccccccccCCccccCCceEEEEeeeeEE---------cccceeecccCCCCCcCccceEEeeeeCC------E
Confidence 46888887776422111223589999999974310 01335544456799999999999999753 2
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcc---cCCceEEEEEEEEcCCCCcceEEEEEEEEe
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDE---FNGAVRFVRYQIRTGHGKPNGVLSFCYKLK 144 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g---~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~ 144 (281)
.|.|.|++... ++|+.++|+|.+|++. .++ ....|..| +++|.|++.+++.
T Consensus 71 ~l~i~Vfh~a~----~fvAn~tV~~edL~~~c~~~~g-~~e~WvdL-----eP~Gkl~~~i~~~ 124 (126)
T 1yrk_A 71 VIQIVLMRAAE----EPVSEVTVGVSVLAERCKKNNG-KAEFWLDL-----QPQAKVLMSVQYF 124 (126)
T ss_dssp EEEEEEEEETT----EEEEEEEEEHHHHHHHHHTTTT-EEEEEEEC-----BSSCEEEEEEEEE
T ss_pred EEEEEEEcCCC----CeeeEEEEEHHHHHhhhccCCC-ceEEEEec-----ccCcEEEEEEEEe
Confidence 78999986553 9999999999999976 333 44566554 7899999988874
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.8e-08 Score=81.60 Aligned_cols=116 Identities=14% Similarity=0.144 Sum_probs=81.0
Q ss_pred eEEEEEEEeecCCCCCC-CCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 4 STLELKVNSCSDLKAFN-LFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~-~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
..|+|.+.+++...-.. .....||||.|.+.-.-. ..+.||-+.+..+..|+|||.|.-.|.+.
T Consensus 10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~---------te~gqtl~~KkkT~~P~Wne~Fd~~V~~G------ 74 (138)
T 2enj_A 10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVE---------SENGQMYIQKKPTMYPPWDSTFDAHINKG------ 74 (138)
T ss_dssp CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEE---------ETTEEEEEEEEEEECCCSSSEEEECCCSS------
T ss_pred cceEEEeeccccCCCCCcccccCCceEEEEeeeeee---------ccCceeecccCCCCCccccceEeeeEECC------
Confidence 56889888876544221 123579999999974310 01244422233477999999999999753
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcc---cCCceEEEEEEEEcCCCCcceEEEEEEEEe
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDE---FNGAVRFVRYQIRTGHGKPNGVLSFCYKLK 144 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g---~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~ 144 (281)
-.|.|.|++... ++|+.++|+|.+|++. .++ ....|..| +++|.|++.+++.
T Consensus 75 r~l~i~Vfh~a~----~fVAn~tV~~edL~~~ck~~~g-~~e~WvdL-----eP~Gkl~v~i~~~ 129 (138)
T 2enj_A 75 RVMQIIVKGKNV----DLISETTVELYSLAERCRKNNG-KTEIWLEL-----KPQGRMLMNARYF 129 (138)
T ss_dssp CEEEEEEECSSC----SCCEEEEEESHHHHHHHHHTTT-CEEEEEEC-----BSSCEEEEEEEEC
T ss_pred eEEEEEEEcCCC----CeeeEEEEEHHHHHhhhccCCC-ceEEEEec-----ccCcEEEEEEEEE
Confidence 278999985442 8999999999999976 333 34566554 7899999999885
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.057 Score=57.94 Aligned_cols=95 Identities=16% Similarity=0.132 Sum_probs=60.1
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
+.+.|+|+++.++... .....+.||.+.|..+.. ..+...+|+.. .+.|+.|||.++|++.=..+.. .+
T Consensus 355 ~~f~v~i~~~~~~n~~-~~~~~~~~V~~~l~hG~~-------~L~~~~~T~~~--~~~~~~Wne~l~f~i~i~dLPr-~a 423 (1091)
T 3hhm_A 355 SALRIKILCATYVNVN-IRDIDKIYVRTGIYHGGE-------PLCDNVNTQRV--PCSNPRWNEWLNYDIYIPDLPR-AA 423 (1091)
T ss_dssp SEEEEEEEEESCCCCC-CSSCCCCCEEEEEESSSC-------SSCCEECCCCC--CTTSCEEEEEEEEEEEGGGCCT-TC
T ss_pred CCEEEEEEEecCCCCC-ccccceEEEEEEEEECCE-------EccCceecccc--CCCCCCCCeeEEecCccccCCh-hc
Confidence 5789999999988632 223468899999986532 12244556543 3678899999999986322322 36
Q ss_pred EEEEEEEECCccC----CCeeeEEEEEech
Q 040877 84 FIAFDLYSEGVIY----GYRSIGKVHVPLK 109 (281)
Q Consensus 84 ~L~~eV~d~~~~~----gDk~IG~v~VpL~ 109 (281)
.|.|.|++..... ....||++.++|=
T Consensus 424 rL~~tl~~~~~~~~~~~~~~~lg~~n~~lf 453 (1091)
T 3hhm_A 424 RLCLSICSVKGRKGAKEEHCPLAWGNINLF 453 (1091)
T ss_dssp EEEEEECCCCCCC-------CCEEEEEESB
T ss_pred EEEEEEEEecCccCcccccceeEEeeeeeE
Confidence 8999999754311 1234555555553
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.082 Score=55.98 Aligned_cols=77 Identities=14% Similarity=0.250 Sum_probs=51.4
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
..|.|+|+++.++... ...+-||.+.|..+... .+....|+-. ..+.++.|||.++|++.=..+.. .+
T Consensus 217 ~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~-------l~~~~~T~~~-~~~~~~~Wne~l~f~i~i~dLPr-~a 284 (940)
T 2wxf_A 217 QPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEM-------LCKTVSSSEV-NVCSEPVWKQRLEFDISVCDLPR-MA 284 (940)
T ss_dssp SEEEEEEEEEECCCC------CEEEEEEEEEETTEE-------SSCCEECCCE-ESCSSCEEEEEEEEEEEGGGCCT-TC
T ss_pred CceEEEEEEecccCCC---CCceEEEEEEEEECCEE-------ccCceecccc-cCCCCcccceEEEcccccccCCc-cc
Confidence 5799999999998643 34789999988765311 1233444432 23678999999999887332332 26
Q ss_pred EEEEEEEEC
Q 040877 84 FIAFDLYSE 92 (281)
Q Consensus 84 ~L~~eV~d~ 92 (281)
.|.|.||+.
T Consensus 285 ~L~~ti~~~ 293 (940)
T 2wxf_A 285 RLCFALYAV 293 (940)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEe
Confidence 888999874
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.094 Score=44.40 Aligned_cols=125 Identities=14% Similarity=0.227 Sum_probs=81.1
Q ss_pred eEEEEEEEeecCCCCC-CCCCCCCeEE--EEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCc--c
Q 040877 4 STLELKVNSCSDLKAF-NLFNRLSVYS--VVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFV--D 78 (281)
Q Consensus 4 g~LeVtViSAkdLk~~-~~~gk~DPYV--vV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~--~ 78 (281)
..+||.|..+.==+.. ...+..+|.. .+.+..- ..+.|.+.+ |.+|.+|-+..|.|.... +
T Consensus 18 nlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~df------------Etq~Tpv~~--G~~p~y~fts~Y~V~~d~~fl 83 (156)
T 2yrb_A 18 NLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDF------------ELQTTPVVR--GLHPEYNFTSQYLVHVNDLFL 83 (156)
T ss_dssp EEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTC------------CCEECCCEE--SSSCCCCEEEEEEECCSHHHH
T ss_pred cEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEece------------Eeeeccccc--CCCCCcceEEEEEEEeCHHHH
Confidence 4689999888621111 1112334544 4444332 477888875 899999999998886321 1
Q ss_pred C-CCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCC--CcceEEEEEEEEee
Q 040877 79 N-CNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHG--KPNGVLSFCYKLKG 145 (281)
Q Consensus 79 ~-~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~G--K~~G~L~Lsl~f~p 145 (281)
+ -....|++|+..... ..-+.||.++|+|.+|++.... ......|...+| ..-|.|.+.+++.-
T Consensus 84 ~yL~~~~l~lELhqa~g-~~~~tla~~~I~l~~lLe~~~~--i~g~~~L~g~~g~~~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 84 QYIQKNTITLEVHQAYS-TEYETIAACQLKFHEILEKSGR--IFCTASLIGTKGDIPNFGTVEYWFRLRV 150 (156)
T ss_dssp HHHHHCCEEEEEEEECS-SCEEEEEEEEECCSHHHHCCSC--EEEEEEECBSSSCCTTSEEEEEEEEEEE
T ss_pred HHHhcCCEEEEEEEeeC-CCceEEEEEEEEhHHhhCcCCc--eEEEEEEEcCCCCcceEEEEEEEEEEec
Confidence 0 011268888877541 2346899999999999986432 223446777777 46799999999975
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.8 Score=40.70 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=39.5
Q ss_pred ceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCcc----CCCeeeEEEEEech
Q 040877 49 QRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVI----YGYRSIGKVHVPLK 109 (281)
Q Consensus 49 ~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~----~gDk~IG~v~VpL~ 109 (281)
...+|.|.. ...+|.|+|+|.+.|+.... ...-|.|+++.-..- ..++.+|.+-+||-
T Consensus 77 se~~S~V~Y-Hnk~P~w~EtIKi~LP~~~~--~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~ 138 (220)
T 3l4c_A 77 SEYKSVIYY-QVKQPRWFETVKVAIPIEDV--NRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM 138 (220)
T ss_dssp SCEECCCCT-TCSSCCCCEEEEEEECTTSS--TTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred eeEEEEEEE-cCCCCCceEeEEEeeChhhc--CCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence 567887764 57899999999999996533 236888888753311 11345777777664
|
| >2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.14 Score=55.02 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=51.8
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
+.+.|+|+++.+|... ...+.||.+.|..+... .+...+|+-. ..+.++.|||.++|++.=..+.. .+
T Consensus 353 ~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~-------L~~~~~T~~~-~~~~~~~Wnewl~f~i~~~dLPr-~a 420 (1092)
T 2y3a_A 353 NPFQITLVKGNKLNTE---ETVKVHVRAGLFHGTEL-------LCKTVVSSEI-SGKNDHIWNEQLEFDINICDLPR-MA 420 (1092)
T ss_dssp SEEEEEECCCCCCCCC---SSCCCCCBCCEEETTEE-------SSCCCBCCCC-CSSSCCCCCEEEEEEEESSSCCT-TC
T ss_pred CCEEEEEEEeccCCCC---CCceEEEEEEEEECCEE-------ccCceecccc-cCCCCCccceeEEeCCccccCCh-hc
Confidence 6799999999988643 34688888777754211 1233345432 23678999999999887333333 36
Q ss_pred EEEEEEEEC
Q 040877 84 FIAFDLYSE 92 (281)
Q Consensus 84 ~L~~eV~d~ 92 (281)
.|.|.||+.
T Consensus 421 ~L~~ti~~~ 429 (1092)
T 2y3a_A 421 RLCFAVYAV 429 (1092)
T ss_dssp EEEEECCCC
T ss_pred EEEEEEEEe
Confidence 889999874
|
| >2qzq_A Axin interactor, dorsalization associated protein; beta sheet sandwich, coiled coil, signaling protein, lipid binding protein; 1.90A {Danio rerio} PDB: 2qz5_A | Back alignment and structure |
|---|
Probab=85.38 E-value=2.6 Score=35.46 Aligned_cols=100 Identities=13% Similarity=0.018 Sum_probs=62.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeec-CCCCCCCeeceEEEEEeccCccCCCce
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTD-REGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~-~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
.|.|.|-+- +|++... -.|||+.|++.... +.-....+.|.+. +.++..=.||.+.++...-..+.. .+
T Consensus 15 ~l~v~Ie~i-glkda~~--~~~P~~tVSV~D~~------G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~-G~ 84 (152)
T 2qzq_A 15 LLTLTIEKI-GLKDAGQ--CIDPYITVSVKDLN------GIDLNPVQDTPVATRKEDTYIHFSVDVEIQRHLEKLPK-GA 84 (152)
T ss_dssp EEEEEEEEE-ECTTGGG--CEEEEEEEEEECTT------SCBSSCCEECCCCCEECSSEEEEEEEEECSSCGGGSCT-TC
T ss_pred EEEEEEEEE-EeCCHHH--ccCCeEEEEEEcCC------CCCccccccCCCcceecCCeEEEeeEEEeeCcHHHCCC-Cc
Confidence 366655544 8887542 26999999997431 1112356778776 333445567766666544222223 36
Q ss_pred EEEEEEEECCccCCCe--eeEEEEEechhhhccc
Q 040877 84 FIAFDLYSEGVIYGYR--SIGKVHVPLKDLIDEF 115 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk--~IG~v~VpL~dL~~g~ 115 (281)
.|.||++++..- +.+ ..+++.+.+.++..|.
T Consensus 85 aivfElkH~k~k-kkk~S~kCw~f~~~d~i~~g~ 117 (152)
T 2qzq_A 85 AIFFEFKHYKPK-KRFTSTKCFAFMEMDEIKPGP 117 (152)
T ss_dssp EEEEEEEEEETT-TTEEEEEEEEEEEGGGCCSEE
T ss_pred EEEEEEEEeccc-ceeeeeeeEEEEEhhhcccCc
Confidence 899999987642 333 5789999999887653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 281 | ||||
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-08 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 8e-06 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 3e-05 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 1e-04 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 2e-04 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 0.001 |
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 50.1 bits (119), Expect = 1e-08
Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 23/145 (15%)
Query: 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPE 64
TLE+ + S L+ + N + Y ++ Q QK+ G PE
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTC-------------RTQDQKSNVAEGMGTTPE 57
Query: 65 WNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRY 124
WN F + D+ +E ++G+ +PL+ + E G++ Y
Sbjct: 58 WNETFIFTVSEGTTELKAKIFDKDVGTED-----DAVGEATIPLEPVFVE--GSIPPTAY 110
Query: 125 QIRTGHGKPNG--VLSFCYKLKGMT 147
+ + G ++ +K G +
Sbjct: 111 NV-VKDEEYKGEIWVALSFKPSGPS 134
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.4 bits (99), Expect = 8e-06
Identities = 16/111 (14%), Positives = 38/111 (34%), Gaps = 11/111 (9%)
Query: 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNP 63
+TL + V L ++ Y V++ + + + ++KT + N
Sbjct: 15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHA--------KKRISKKKTHVKK-CTPNA 65
Query: 64 EWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDE 114
+N + FDI ++ + + F + IG++ +
Sbjct: 66 VFNELFVFDIP--CESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSG 114
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (95), Expect = 3e-05
Identities = 22/149 (14%), Positives = 49/149 (32%), Gaps = 26/149 (17%)
Query: 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNP 63
S L++ V S + + S Y V++ K ++ T +P
Sbjct: 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTN--------------SP 51
Query: 64 EWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVR 123
+W + + + F ++S + +G + + + + N + V
Sbjct: 52 KWKQPLTVIV------TPVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVV 105
Query: 124 YQIR----TGHGKPNGVLSFCYKLKGMTI 148
++ + G LS C L G+ +
Sbjct: 106 VTLQLGGDKEPTETIGDLSIC--LDGLQL 132
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.1 bits (90), Expect = 1e-04
Identities = 12/107 (11%), Positives = 34/107 (31%), Gaps = 1/107 (0%)
Query: 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPE 64
L + + +L + + V ++ G + + + ++ + NPE
Sbjct: 19 NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPE 78
Query: 65 WNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDL 111
WN + + + + ++ +G+V + L
Sbjct: 79 WNQTVIYKSISMEQ-LMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (88), Expect = 2e-04
Identities = 13/111 (11%), Positives = 37/111 (33%), Gaps = 12/111 (10%)
Query: 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNP 63
L + + DL + + Y + + K ++R +++ P
Sbjct: 14 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTL---------EP 64
Query: 64 EWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRS--IGKVHVPLKDLI 112
+WN + + + L+ + + S +G++ + L+ +
Sbjct: 65 KWNQTFIYSPVHRRE-FRERMLEITLWDQARVREEESEFLGEILIELETAL 114
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.2 bits (83), Expect = 0.001
Identities = 15/108 (13%), Positives = 39/108 (36%), Gaps = 12/108 (11%)
Query: 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNP 63
L + V +L + Y + +I + +Q+ ++ NP
Sbjct: 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSL---------NP 65
Query: 64 EWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDL 111
EWN +F +K ++ ++ +++ + +G + + +L
Sbjct: 66 EWNETFRFQLK---ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 110
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 281 | |||
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.93 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.9 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.89 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.88 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.86 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.86 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.83 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.81 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.8 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.77 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.77 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.77 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.77 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.76 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.76 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.75 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.73 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.73 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.69 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.64 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 97.0 | |
| d2yrba1 | 142 | Fantom {Human (Homo sapiens) [TaxId: 9606]} | 93.87 |
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.93 E-value=1e-25 Score=182.46 Aligned_cols=122 Identities=20% Similarity=0.317 Sum_probs=105.9
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.|+|+|+|++|++|++.+.++++||||+|++.+ ++++|+++++++.||+|||+|.|.+.+..
T Consensus 9 ~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~-------------~~~~t~~~~~~~~nP~Wne~f~f~v~~~~----- 70 (136)
T d1wfja_ 9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT-------------QDQKSNVAEGMGTTPEWNETFIFTVSEGT----- 70 (136)
T ss_dssp EEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS-------------CEEECCCCTTCCSSCEEEEEEEEEEESSC-----
T ss_pred cEEEEEEEEEeeCCCCCCCCCCCCccEEEEEee-------------eeEEEEEEecCCCcEEEeeEEEEEEcCcc-----
Confidence 379999999999999999999999999999965 57789998878999999999999998532
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
..|+|+|||++.++.|++||++.|+|.+++... .....+|.+.. +++.+|+|+|+++|.|
T Consensus 71 ~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~--~~~~~~~~l~~-~~~~~G~i~l~l~~~p 130 (136)
T d1wfja_ 71 TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG--SIPPTAYNVVK-DEEYKGEIWVALSFKP 130 (136)
T ss_dssp CEEEEEECCSSSCTTTCCSEEEEEESHHHHHHS--EEEEEEEEEEE-TTEEEEEEEEEEEEEE
T ss_pred ceEEEEEEEecCCCCCCEEEEEEEEhHHhcccC--CcCcEEEEecC-CCccCEEEEEEEEEEe
Confidence 369999999998888999999999999997642 34456777754 6788999999999988
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=4.6e-24 Score=170.76 Aligned_cols=118 Identities=25% Similarity=0.312 Sum_probs=99.1
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.|.|+|+|++|+||+..+..|++||||+|++++ +++||++++ ++.||+|||+|.|.+....
T Consensus 5 ~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~-------------~~~~T~~~~-~t~nP~wne~f~f~v~~~~----- 65 (126)
T d2ep6a1 5 VGILQVKVLKAADLLAADFSGKSDPFCLLELGN-------------DRLQTHTVY-KNLNPEWNKVFTFPIKDIH----- 65 (126)
T ss_dssp SEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT-------------EEEECCCCS-SCSSCCCCEEEEEEESCTT-----
T ss_pred cEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCC-------------eEEEEEeeC-CceeEEEEEEEEEEEeccC-----
Confidence 589999999999999999999999999999954 578999976 5899999999999997532
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEE--cCCCCcceEEEEEEEEe
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIR--TGHGKPNGVLSFCYKLK 144 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~--~~~GK~~G~L~Lsl~f~ 144 (281)
..|.|+|||++.++.|++||++.|+|.++..+. . .+|.|. +..++.+|.|+|+++|.
T Consensus 66 ~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~---~--~~~~l~~~~~~~~~~G~i~l~~~~i 124 (126)
T d2ep6a1 66 DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ---P--NCYVLKNKDLEQAFKGVIYLEMDLI 124 (126)
T ss_dssp CEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC---C--EECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred ceeEEEEEEccCCcCcceEEEEEEEHHHCCCCC---c--eEEEccccCCCCceeEEEEEEEEEE
Confidence 379999999998878999999999999997653 2 245554 33566789999998875
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.89 E-value=1.6e-22 Score=163.39 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=95.6
Q ss_pred eEEEEEEEeecCCCC--CCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 4 STLELKVNSCSDLKA--FNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 4 g~LeVtViSAkdLk~--~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
+.|+|+||+|++|.. .+..+++||||+|++.+...+. +++||+++++++.||+|||+|.|.+.....
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~--------~~~~T~~v~~~~~nP~wne~f~f~~~~~~~--- 72 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDT--------GSRQTAVITNNGFNPRWDMEFEFEVTVPDL--- 72 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTC--------EEEECCCCSSCSSSCEEEEEEEEEESCGGG---
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCc--------EEEEEEEEecccCCceEEEEEEEEEEcchh---
Confidence 579999999999964 4567889999999998754332 688999988888899999999999875432
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCc--ceEEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKP--NGVLSFCYKL 143 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~--~G~L~Lsl~f 143 (281)
..|+|+|+|++.+++|++||++.|+|.++..|. .+++|++.+|+. .+.|.+.+++
T Consensus 73 -~~L~~~V~D~d~~~~d~~iG~~~i~l~~l~~g~------~~~~L~~~~g~~~~~~~L~v~i~~ 129 (131)
T d1qasa2 73 -ALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY------RHVHLLSKNGDQHPSATLFVKISI 129 (131)
T ss_dssp -CEEEEEEEECCTTTCCEEEEEEEEEGGGBCCEE------EEEEEECTTSCEEEEEEEEEEEEE
T ss_pred -ceEEEEEEEecCCCCCcEEEEEEEEEeccCCCC------EEEECCCCCcCCCCCCEEEEEEEE
Confidence 489999999998888999999999999997653 368999888874 4555555544
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=4.4e-22 Score=161.69 Aligned_cols=121 Identities=18% Similarity=0.216 Sum_probs=96.7
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
+.|+|+|++|++|++.+.++++||||+|.+++ ++.||++.+ ++.||+|||.|.|.+... .
T Consensus 6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~-------------~~~kT~v~~-~t~nP~wne~f~f~~~~~------~ 65 (133)
T d2nq3a1 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDG-------------QSKKTEKCN-NTNSPKWKQPLTVIVTPV------S 65 (133)
T ss_dssp EEEEEEEEEEEECCCC--CCCCCEEEEEEETT-------------EEEECCCCS-SCSSCEEEEEEEEEECTT------C
T ss_pred eEEEEEEEEeECCCcCCCCCCcCeEEEEEECC-------------eEEeeEEEE-ecccEEEcceEEEEEEec------c
Confidence 78999999999999988889999999999965 578999965 689999999999999742 3
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcccCCc--eEEEEEEEEcCCC--CcceEEEEEEEEe
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGA--VRFVRYQIRTGHG--KPNGVLSFCYKLK 144 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~--~~~vsy~L~~~~G--K~~G~L~Lsl~f~ 144 (281)
.|+|+|||++.++.|++||++.|+|.+++....+. ....++.+....+ +..|+|++.+...
T Consensus 66 ~l~~~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~ 130 (133)
T d2nq3a1 66 KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGL 130 (133)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESE
T ss_pred eeEEEEEEccCCCCCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeE
Confidence 79999999999889999999999999998765443 2345555555433 3568888766543
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.2e-21 Score=155.78 Aligned_cols=121 Identities=12% Similarity=0.162 Sum_probs=98.1
Q ss_pred ceEEEEEEEeecCCCCC---CCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccC
Q 040877 3 WSTLELKVNSCSDLKAF---NLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDN 79 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~---~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~ 79 (281)
...|+|+|++|+||+.. +.+++.||||++.+.+... +++||++.+ ++.||+|||+|.|.+....
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~----------~~~~T~~~~-~t~nP~wne~f~f~i~~~~-- 68 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPD----------SRKRTRHFN-NDINPVWNETFEFILDPNQ-- 68 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTT----------CCEECCCCT-TCSSCEEEEEEEEEECTTS--
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCccc----------ceeEeeecC-CCccceeceeeeecccCcc--
Confidence 47899999999999874 4468999999999965421 578999965 6899999999999997532
Q ss_pred CCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 80 CNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 80 ~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
...|+|+|||++. .+|++||++.|+|++|..+ .....||+|. ...+|.|+|++++.+
T Consensus 69 --~~~L~v~V~d~d~-~~d~~lG~~~i~L~~l~~~---~~~~~~~~L~---~~~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 69 --ENVLEITLMDANY-VMDETLGTATFTVSSMKVG---EKKEVPFIFN---QVTEMVLEMSLEVAS 125 (126)
T ss_dssp --CCEEEEEEEECCS-SCCEEEEEEEEEGGGSCTT---CEEEEEEEET---TTEEEEEEEEEECCC
T ss_pred --cCcEEEEEEECCC-CCCCeEEEEEEEHHHccCC---CeEEEEEEcc---CCCeEEEEEEEEEEe
Confidence 2479999999985 5799999999999999764 3456789883 346799999988765
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.86 E-value=2.7e-21 Score=157.34 Aligned_cols=118 Identities=15% Similarity=0.201 Sum_probs=96.6
Q ss_pred ceEEEEEEEeecCCCCCC-----------CCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEE
Q 040877 3 WSTLELKVNSCSDLKAFN-----------LFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKF 71 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~-----------~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F 71 (281)
.|.|+|+|++|+||+..+ ..+.+||||+|.+++. ...||++.+ ++.||+|||+|.|
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~------------~~~~T~~~~-~t~~P~Wne~f~f 71 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDS------------RIGQTATKQ-KTNSPAWHDEFVT 71 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTE------------EEEECCCCS-SCSSCEEEEEEEE
T ss_pred EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCC------------cCcEeeEEc-CCCCccCccEEEE
Confidence 489999999999998643 3467899999999642 346788855 6889999999999
Q ss_pred EeccCccCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 72 DIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 72 ~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
++.+. ..|.|+|+|++.+++|++||++.|+|++++.+.. .....|+.| +++|+|++.++|.+
T Consensus 72 ~v~~~------~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~-~~~~~w~~L-----~p~G~v~l~v~~~~ 133 (136)
T d1gmia_ 72 DVCNG------RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGS-RHFEDWIDL-----EPEGKVYVIIDLSG 133 (136)
T ss_dssp EEEEE------CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTC-SEEEEEEEC-----BSSCEEEEEEEEEE
T ss_pred EEecC------CceEEEEEEecCCCCceeEEEEEEEHHHhhhcCC-cceeEEEeC-----CCCcEEEEEEEEEe
Confidence 99742 2799999999988889999999999999987643 234567776 36799999999987
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.83 E-value=3.6e-20 Score=148.91 Aligned_cols=111 Identities=16% Similarity=0.234 Sum_probs=91.7
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 2 EWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 2 e~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
..+.|.|+|++|+||+..+..+..||||+|++.++.... .++||++++ ++.||+|||+|.|.+.....
T Consensus 13 ~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~--------~~~kT~v~~-~t~nP~wne~f~f~v~~~~~--- 80 (132)
T d1a25a_ 13 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSE--------SKQKTKTIK-CSLNPEWNETFRFQLKESDK--- 80 (132)
T ss_dssp SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCS--------SCEECCCCS-SCSSCEEEEEEEEECCSGGG---
T ss_pred cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCc--------cccEEeeec-CCCCCccceEEEEEeEcccc---
Confidence 347899999999999999988999999999997653321 578999976 58999999999999975432
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
...|.|+|||++.+++|++||.+.|+|.+|..+. ...||+|..
T Consensus 81 ~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~----~~~W~~L~~ 123 (132)
T d1a25a_ 81 DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG----VDGWFKLLS 123 (132)
T ss_dssp GCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTCC----EEEEEECBC
T ss_pred CCEEeEEEEecCCCCCCcEeEEEEEeHHHcCCCC----CCeEEECCC
Confidence 1379999999998888999999999999986532 246899865
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.81 E-value=1.6e-19 Score=147.14 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=90.5
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
...|+|+|++|+||+..+..+..||||+|++.++.. ++.||++.+ ++.||+|||+|.|.+...... .
T Consensus 33 ~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~----------~~~kT~~~~-~t~~P~wne~f~f~i~~~~l~--~ 99 (143)
T d1rsya_ 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK----------KKFETKVHR-KTLNPVFNEQFTFKVPYSELG--G 99 (143)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCC----------SCEECCCCT-TCSSCEEEEEEEECCCHHHHT--T
T ss_pred CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCC----------eeEEEEEec-cccCcceeeeeEEEEEeeccC--C
Confidence 468999999999999988889999999999976521 578999976 589999999999998743332 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
..|+|+|+|.+.++++++||.+.|+|.++..+. ....||+|..
T Consensus 100 ~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~---~~~~W~~L~s 142 (143)
T d1rsya_ 100 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH---VTEEWRDLQS 142 (143)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSS---CEEEEEECBC
T ss_pred ceEEEEEEEcCCCCCCcEEEEEEEEchhccCCC---CCccEEeCCC
Confidence 489999999998888999999999999986542 3457888753
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=8.6e-20 Score=146.70 Aligned_cols=113 Identities=17% Similarity=0.108 Sum_probs=89.0
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 2 EWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 2 e~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
+.+.|+|+|++|+||+..+..++.||||+|++.++.. +++||++++ ++.||+|||+|.|.+.......
T Consensus 16 ~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~----------~~~kT~v~~-~t~~P~wne~f~f~v~~~~~~~- 83 (130)
T d1dqva1 16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRK----------KKFQTKVHR-KTLNPIFNETFQFSVPLAELAQ- 83 (130)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTT----------SCEECCCCC-SCSSCEEEEEEEEECCGGGGSS-
T ss_pred CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCC----------ceEeceeEc-CCCCeeeeeEEEEEEchHHcCC-
Confidence 3578999999999999988889999999999965421 578999976 5899999999999997543322
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
..|.|+|+|.+.+++|++||++.|++...+.... .....||+|.+
T Consensus 84 -~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~-~~~~~W~~L~~ 128 (130)
T d1dqva1 84 -RKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQP-PDRPLWRDILE 128 (130)
T ss_dssp -CCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSC-SSCCCCEECBC
T ss_pred -CeEEEEEEEcCCCCCCceEEEEEECchhhhhcCC-CCCcEEEeccc
Confidence 4799999999988889999999998755443221 12345888754
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.77 E-value=1.8e-18 Score=139.98 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=77.7
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.++|.|+|++|+||+..+..+..||||+|.+..+... ..++||++.+ ++.||.|||+|.|.+...... .
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~--------~~~~kT~~~~-~t~~P~wne~f~F~v~~~~~~--~ 82 (138)
T d1w15a_ 14 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKR--------ISKKKTHVKK-CTPNAVFNELFVFDIPCESLE--E 82 (138)
T ss_dssp TTEEEEEEEEEESCC------CCCEEEEEEEEETTEE--------EEEEECCCCC-SCSSEEEEEEEEEECCSSSST--T
T ss_pred CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCccc--------CccccceeEC-CCCCCeECcEEEEEecHHHhC--c
Confidence 4689999999999999888899999999999765322 2577899876 589999999999999754432 3
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhh
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLI 112 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~ 112 (281)
..|.|+|+|.+.+++|++||++.|++.+..
T Consensus 83 ~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~ 112 (138)
T d1w15a_ 83 ISVEFLVLDSERGSRNEVIGRLVLGATAEG 112 (138)
T ss_dssp EEEEEEEEECCTTSCCEEEEEEEESTTCCS
T ss_pred cEEEEEEEeCCCCCCCCEEEEEEEcchhCC
Confidence 589999999998888999999999998643
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.77 E-value=4.7e-19 Score=143.99 Aligned_cols=102 Identities=19% Similarity=0.307 Sum_probs=82.1
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
++.|.|+|++|++|+..+ +.||||+|.+++ ++.+|++.+ +.||+|||+|.|.+....
T Consensus 1 ~~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~-------------~k~~T~~~k--~~nP~Wne~f~f~v~~~~----- 57 (128)
T d2cjta1 1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQN-------------VKSTTIAVR--GSQPSWEQDFMFEINRLD----- 57 (128)
T ss_dssp CEEEEEEEEEEECSSCGG---GCEEEEEEEETT-------------EEEECCCEE--SSSCEEEEEEEEEECCCS-----
T ss_pred CeEEEEEEEEEECCCCCC---CcCeEEEEEeCC-------------EEEEEEEec--CCCCeEEEEEEEeecccc-----
Confidence 357999999999999865 689999999964 588898875 569999999999998642
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG 129 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~ 129 (281)
..|.|+|||++. .+|++||++.|+|+++...... ....||.|...
T Consensus 58 ~~L~v~V~d~~~-~~d~~lG~~~I~L~~l~~~~~~-~~~~W~~L~~~ 102 (128)
T d2cjta1 58 LGLTVEVWNKGL-IWDTMVGTVWIPLRTIRQSNEE-GPGEWLTLDSQ 102 (128)
T ss_dssp SEEEEEEEECCS-SCEEEEEEEEEEGGGSCBCSSC-CCCEEEECBC-
T ss_pred ceEEEEEEeCCC-cCCcceEEEEEEehhhccCCCC-CCCeeEECCcc
Confidence 278999999986 4799999999999999865321 23458888543
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=2.7e-18 Score=139.28 Aligned_cols=98 Identities=18% Similarity=0.215 Sum_probs=80.6
Q ss_pred ceEEEEEEEeecCCCCCCCCCC-CCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEE-eccCccCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNR-LSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFD-IKAFVDNC 80 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk-~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~-V~~~~~~~ 80 (281)
.+.|+|+|++|+||+..+..+. .||||+|.+.++.. +++||++++ ++.||+|||+|.|. +......
T Consensus 21 ~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~----------~~~kT~v~~-~t~nP~wne~f~f~~~~~~~l~- 88 (138)
T d1ugka_ 21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKK----------HKVKTRVLR-KTLDPAFDETFTFYGIPYTQIQ- 88 (138)
T ss_dssp GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTC----------SEEECCCCS-SCSSCEEEEEEEEECCCSTTGG-
T ss_pred CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCC----------EeEeCeeEe-CCCCCceeeEEEEeeeCHHHcc-
Confidence 4689999999999998876654 79999999976421 578999976 68999999999997 4432222
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEechhhhc
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLID 113 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~ 113 (281)
...|+|+|+|.+.+++|++||++.|+|+++..
T Consensus 89 -~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~ 120 (138)
T d1ugka_ 89 -ELALHFTILSFDRFSRDDIIGEVLIPLSGIEL 120 (138)
T ss_dssp -GCEEEEEEEEECSSCCCCCCEEEEEECTTCCC
T ss_pred -cceEEEEEEECCCCCCCcEEEEEEEEcccccC
Confidence 24899999999988889999999999999854
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=2.6e-18 Score=136.70 Aligned_cols=110 Identities=13% Similarity=0.198 Sum_probs=84.1
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEE-eccCccCC
Q 040877 2 EWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFD-IKAFVDNC 80 (281)
Q Consensus 2 e~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~-V~~~~~~~ 80 (281)
..+.|+|+|++|+||+..+..+..||||+|.+.++..+. .++||++.+ ++.||+|||+|.|. +......
T Consensus 12 ~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~--------~~~kT~~~~-~t~~P~wne~f~f~~~~~~~l~- 81 (125)
T d2bwqa1 12 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDK--------NKRRTKTVK-KTLEPKWNQTFIYSPVHRREFR- 81 (125)
T ss_dssp TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGG--------GEEECCCCS-SBSSCEEEEEEEECSCCGGGGG-
T ss_pred CCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCc--------cccccCEEc-CCCCCEEccEEEEeeeChhhcC-
Confidence 357899999999999988888999999999997653322 678999976 68999999999997 4433332
Q ss_pred CceEEEEEEEECCccC--CCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 81 NHLFIAFDLYSEGVIY--GYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~--gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
...|.|+|+|.+.+. ++++||++.|+|+++.... . ..||+|
T Consensus 82 -~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~--~--~~Wy~L 124 (125)
T d2bwqa1 82 -ERMLEITLWDQARVREEESEFLGEILIELETALLDD--E--PHWYKL 124 (125)
T ss_dssp -GCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS--C--EEEEEC
T ss_pred -CCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCC--C--CEEEeC
Confidence 248999999988753 3569999999999987542 1 358876
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=1.2e-19 Score=146.62 Aligned_cols=122 Identities=12% Similarity=0.129 Sum_probs=90.3
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhh-ccccceEEeeecCCCCCCCeeceEEEEEeccC-ccCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQR-QTCLQRQKTPTDREGGGNPEWNHMMKFDIKAF-VDNC 80 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~-~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~-~~~~ 80 (281)
.+.|+|+|++|+||+..+..+..||||+|++..+..+....+ ....+++||++++ ++.||+|||+|.|.+... ...
T Consensus 17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~~~- 94 (142)
T d1rh8a_ 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ-KSLNPEWNQTVIYKSISMEQLM- 94 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTH-HHHSCEEEEEEEECSCCHHHHT-
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCc-CCCCceeEEEEEEeeecccccC-
Confidence 368999999999999999899999999999954321100000 0000356899876 589999999999984322 221
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCC
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGH 130 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~ 130 (281)
...|.|+|||++.+++|++||++.|+|.++..+.. ...||+|...+
T Consensus 95 -~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~---~~~W~~L~~~~ 140 (142)
T d1rh8a_ 95 -KKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN---TPRWYPLKEQT 140 (142)
T ss_dssp -TCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTT---CCEEEECBCCC
T ss_pred -CCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCC---ceEEEECcCcC
Confidence 25899999999988889999999999999876532 34688887643
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=4.9e-18 Score=136.21 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=83.1
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+..+..+..||||+|++..+... ..++||++.+ ++.||+|||+|.|.|...... .
T Consensus 14 ~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~--------~~~~kT~v~~-~t~~P~wne~f~f~v~~~~l~--~ 82 (137)
T d2cm5a1 14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGK--------KAKHKTQIKK-KTLNPEFNEEFFYDIKHSDLA--K 82 (137)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC-----------CCEEECCCCC-SCSSCEEEEEEEEECCGGGGG--G
T ss_pred CCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCcc--------ceeecCEeEc-CCCCCccceEEEEEeEHHHcc--c
Confidence 4789999999999998888889999999999765322 2678999976 589999999999999754332 3
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLID 113 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~ 113 (281)
..|.|.|++.+.+.+|++||++.|+|.++.+
T Consensus 83 ~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~~ 113 (137)
T d2cm5a1 83 KSLDISVWDYDIGKSNDYIGGCQLGISAKGE 113 (137)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEETTCCHH
T ss_pred cEEEEEeeeCCCCCCCCEEEEEEeCccccCc
Confidence 5899999999988889999999999987544
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=6.8e-18 Score=139.71 Aligned_cols=115 Identities=16% Similarity=0.164 Sum_probs=90.6
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|.|+|++|+||+..+..+..||||+|.+..+..+ ..++||++.+ ++.||+|||+|.|.|...... .
T Consensus 24 ~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~--------~~~~kT~v~~-~t~nP~wne~f~F~v~~~~l~--~ 92 (157)
T d1uowa_ 24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKR--------LKKKKTTIKK-NTLNPYYNESFSFEVPFEQIQ--K 92 (157)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEE--------EEEEECCCCC-SCSSCEEEEEEEEECCGGGGG--G
T ss_pred CCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCcc--------ccceeccccc-CCCCcccCCeEEEEecHHHcC--c
Confidence 4789999999999999888899999999999765322 2467899875 689999999999999754432 3
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcc---------cCCceEEEEEEEEc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDE---------FNGAVRFVRYQIRT 128 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g---------~~g~~~~vsy~L~~ 128 (281)
..|.|+|++.+.+.++++||++.|++.++..+ ..+.....||.|+.
T Consensus 93 ~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~ 147 (157)
T d1uowa_ 93 VQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147 (157)
T ss_dssp CEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred cEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence 58999999999988899999999999764221 11223457887754
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.8e-17 Score=131.96 Aligned_cols=104 Identities=20% Similarity=0.283 Sum_probs=78.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEee-ecCCCCCCCeeceE-EEEE-eccCccCCC
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTP-TDREGGGNPEWNHM-MKFD-IKAFVDNCN 81 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTk-V~~~gg~NPvWNEt-f~F~-V~~~~~~~~ 81 (281)
+|+|+||||++|.+. +.||||+|+|.|.+.+.+ ++.||+ +.+++|.||+|||+ |.|. +....
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~-------~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~---- 66 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPK-------RRYRTKLSPSTNSINPVWKEEPFVFEKILMPE---- 66 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCC-------CCEECCCCSSSCCSSCBCCCCCEEEEEESSGG----
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCC-------ccEEEEEEEeCCeecceEcccEeEEEecCCCc----
Confidence 799999999999764 479999999987544321 234444 34678999999986 4443 33322
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCc
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKP 133 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~ 133 (281)
.++|+|+|+|++ |++||++.|||++|..|+ ...+|++.+|++
T Consensus 67 l~~L~f~V~D~d----~~~lG~~~ipl~~l~~Gy------R~vpL~~~~g~~ 108 (122)
T d2zkmx2 67 LASLRVAVMEEG----NKFLGHRIIPINALNSGY------HHLCLHSESNMP 108 (122)
T ss_dssp GCEEEEEEEETT----TEEEEEEEEEGGGBCCEE------EEEEEECTTCCE
T ss_pred ccEEEEEEECCC----CCEEEEEEEEcccCcCCc------eEEEccCCCcCC
Confidence 359999999965 799999999999998875 345888888884
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.1e-17 Score=135.56 Aligned_cols=109 Identities=9% Similarity=0.002 Sum_probs=86.9
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 2 EWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 2 e~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
+.+.|.|+|++|++|.. .+..||||+|.+.++... .++||++.+ ++.||+|||+|.|.+....+.
T Consensus 24 ~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~---------~~~kT~v~~-~~~~P~wne~f~f~v~~~~l~-- 88 (138)
T d1wfma_ 24 QKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGS---------VEAQTALKK-RQLHTTWEEGLVLPLAEEELP-- 88 (138)
T ss_dssp TTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEE---------EEEECCCCC-CCSSEECSSCEEEECCTTSST--
T ss_pred CCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCc---------cceeeeEEC-CCCCceEeeeEEEEeeehhcc--
Confidence 34789999999999953 467899999999865211 467899875 689999999999999754332
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
...|+|+|+|.+.+++|++||++.|+|.++..+. ....||.|..
T Consensus 89 ~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~---~~~~W~~L~~ 132 (138)
T d1wfma_ 89 TATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPL---GAAQWGELKT 132 (138)
T ss_dssp TCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCT---TCCEEEECCC
T ss_pred ceEEEEEEeeecccccceeeeEEEEEhHHccCCC---CceEeEeCCC
Confidence 2589999999998888999999999999985432 2356888865
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=5.5e-18 Score=137.97 Aligned_cols=99 Identities=21% Similarity=0.248 Sum_probs=83.1
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+..+..+..||||+|.+.++... ..++||++.+ ++.||+|||+|.|.|...... .
T Consensus 19 ~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~--------~~~~kT~~~~-~t~~P~wne~f~F~v~~~~~~--~ 87 (145)
T d1dqva2 19 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRR--------LKKRKTSIKK-NTLNPTYNEALVFDVAPESVE--N 87 (145)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCT--------TSCEECCCCC-SCSSCEEEECCCCCCCSGGGG--S
T ss_pred CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCcc--------ceeecCEEEe-CCCCceecceEEEEEehhhcC--C
Confidence 4789999999999998888899999999999865332 2578999976 689999999999998754332 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhh
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLI 112 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~ 112 (281)
..|.|+|++.+.+++|++||.+.|+|..+.
T Consensus 88 ~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~ 117 (145)
T d1dqva2 88 VGLSIAVVDYDCIGHNEVIGVCRVGPEAAD 117 (145)
T ss_dssp CCCCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred CEEEEEEEecCCCCCCcEEEEEEECchHcC
Confidence 479999999998888999999999998764
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=1.7e-15 Score=121.42 Aligned_cols=115 Identities=13% Similarity=0.158 Sum_probs=84.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
++.|.+..+..++.. .+..||||+|.+.+....+ .+++|++.+ ++.||+|||+|.|.|.+. ..
T Consensus 6 ~~~~~~~~~~~~~~~--~~~~dPY~~v~l~~~~~~~--------~~~~t~~~k-kT~nP~WnE~F~~~v~~~------~~ 68 (123)
T d1bdya_ 6 RISFNSYELGSLQAE--DDASQPFCAVKMKEALTTD--------RGKTLVQKK-PTMYPEWKSTFDAHIYEG------RV 68 (123)
T ss_dssp EEEEEEEECCTTCCC--CCSCCCEEEEEEEEECCGG--------GTTBEEECS-CCBCCCTTCEEEEECCTT------CE
T ss_pred EEEEEEeecccCCCC--CCCCCCEEEEEEcCccccc--------cceEEEEeC-CCCCcccceEEEEEEccc------cE
Confidence 345555555555543 5788999999997642211 234677754 699999999999999742 27
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhccc--CCceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF--NGAVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~--~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
|.|.|+|.+ |+++|.+.|++.+|.... .+.....|+.| +++|.|+|+++|..
T Consensus 69 l~i~V~d~d----d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L-----~~~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 69 IQIVLMRAA----EDPMSEVTVGVSVLAERCKKNNGKAEFWLDL-----QPQAKVLMCVQYFL 122 (123)
T ss_dssp EEEEEEEET----TEEEEEEEEEHHHHHHHHHTTTTEEEEEEEC-----BSSCEEEEEEEEEE
T ss_pred EEEEEEEcc----ccccCccEEehhheeeccccCCCcccEEEeC-----CCCEEEEEEEEEec
Confidence 899999864 789999999999998643 23456678776 47899999999864
|
| >d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Fantom species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.87 E-value=0.21 Score=39.73 Aligned_cols=123 Identities=16% Similarity=0.292 Sum_probs=81.4
Q ss_pred eEEEEEEEeec----CCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCcc-
Q 040877 4 STLELKVNSCS----DLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVD- 78 (281)
Q Consensus 4 g~LeVtViSAk----dLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~- 78 (281)
..+||.|.++. .|...+ .+....||.+.+-.- ..+.|.+.+ |.||.+|-+..|.|..+..
T Consensus 10 nlfEihi~~~~~s~e~l~~~~-d~~p~tF~T~~Fyd~------------Etq~TPv~~--g~~p~ynfts~Y~V~~d~~f 74 (142)
T d2yrba1 10 NLFEIHINKVTFSSEVLQASG-DKEPVTFCTYAFYDF------------ELQTTPVVR--GLHPEYNFTSQYLVHVNDLF 74 (142)
T ss_dssp EEEEEEEEEECCCHHHHHHHC-SSCCEEEEEECSTTC------------CCEECCCEE--SSSCCCCEEEEEEECCSHHH
T ss_pred cEEEEEEeeEEEcHHHHhhcc-CCCCcEEEEEEEEee------------eeecCceec--CCCCcceeEEEEEEccCHHH
Confidence 46788887772 111111 133567887777543 466788874 8999999999988873311
Q ss_pred --CCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCC--cceEEEEEEEEe
Q 040877 79 --NCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGK--PNGVLSFCYKLK 144 (281)
Q Consensus 79 --~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK--~~G~L~Lsl~f~ 144 (281)
.-....|+++|+.... ..-+.|+.+.|.|.+|++.. +. ...+-.|...+|. .-|.|.+-+|+.
T Consensus 75 l~YL~~~~~~lelhqa~g-~~~~tvA~g~i~l~~lLd~~-~r-~~~s~~l~g~~~~~~~~G~leyw~rlr 141 (142)
T d2yrba1 75 LQYIQKNTITLEVHQAYS-TEYETIAACQLKFHEILEKS-GR-IFCTASLIGTKGDIPNFGTVEYWFRLR 141 (142)
T ss_dssp HHHHHHCCEEEEEEEECS-SCEEEEEEEEECCSHHHHCC-SC-EEEEEEECBSSSCCTTSEEEEEEEEEE
T ss_pred HHHHhhCCEEEEEEeecC-CCcceeEEEEEEhhHhhCcc-cc-ccceeEEEccCCCcceEEEEEEEEEEE
Confidence 0011367899987541 22357999999999999864 32 3455567666665 479999988863
|