Citrus Sinensis ID: 040888

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-----
Protein Sequence
MYQNLLVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDIAKTGGNSWSSSPAPPPPPGTKPVTKRKASPFREGDESSSSKIWQWVIIAIAVLLALAIIAIVIALFSRRRSSPSSHFLDEERASQRRAFTPLASQELTNDMAPESIKPFKGIDDYKGGQDYMGFHDYKSNQDHYKGNLFVFWHLLEVNQFNNVKSTNAQAAPFSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccccccccEEcccccEEEEEEcccccEEEccccccccccccEEEcccccccccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccEEEccccccEEcccccHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEHHHccccccccccccccccccHHHHHHHHHccccccEEccccccEEEEEEcccccEEEEEEEcccccccccHHHHHHHHHHHccccccccccEEEEEEcccEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEccccEEEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEccccccccccccccccccEEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccccHcccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccccccccccccccccccccccHHHHHHHHccccHHHEEEccccEEEEEEEcccccEEEEEEEccccccccccHHHHHHHHHHHccccccHHEEEEEEcccccEEEEEEccccccHHHHHc
Coil and Loop (DISEMBL)
MYQNLLVGFFIFYLGSfschvlsktdsqdasALNVMYtslhspsqlsnwkagggdpcgehwkgitcsgssvteiklsglglngqlgyqltnlksvsyldvsnnnlkdsipyqlppnlkhldlsenqfsgtvpysisQMSELKYLnlgsnqlngqlsdmfqknekletldlsknqltgelprsfASLSSLKKLYLqnnqftgsinvlgklpldelnvennkfsgwvPEELKDIAktggnswssspapppppgtkpvtkrkaspfregdessssKIWQWVIIAIAVLLALAIIAIVIALFSrrrsspsshfldeerasqrraftplasqeltndmapesikpfkgiddykggqdymgfhdyksnqdhykgNLFVFWHLLEVnqfnnvkstnaqaapfSMADLLTATANFatgrllgegtigrvyrakypdgkvlAVKKIdsshfqranseSFSEIVQNISRIRHTNIAELVGFcseqghniliydyyrngslheflh
Flexible Loop (DISEMBL)
MYQNLLVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDIAKTggnswssspapppppgtkpvtkrKASPfregdesssskiWQWVIIAIAVLLALAIIAIVIALFSRRRSSPSSHFLDEERASQRRAFtplasqeltndmapesiKPFKGIDDYKGGQDYMGFHDYKSNQDHYKGNLFVFWHLLEVNQFNNVKSTNAQAAPFSMADLLTATANFATgrllgegtigrvYRAKYPDGKVLAVKKIdsshfqransesfSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH
Low Complexity Region (SEG)
MYQNLLVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKlsglglngqlgyqltnlKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYlnlgsnqlngqlsDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDIAKTGGNswssspapppppGTKPVTKRKASPFREGDESSSSKIWQWviiaiavllalaiiaivialFsrrrsspssHFLDEERASQRRAFTPLASQELTNDMAPESIKPFKGIDDYKGGQDYMGFHDYKSNQDHYKGNLFVFWHLLEVNQFNNVKSTNAQAAPFSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH
Disordered region (IsUnstruct)
***NLLVGFFIFYLGSFSCHVLSKTD****SALNVMYTSLH****LSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDL****FSGTVPYSISQMSELKYLNL***************************************LSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPE**********************************************IWQWVIIAIAVLLALAIIAIVIALFS*****************************************FKGIDDYKGGQDYMGFHDYKSNQDHYKGNLFVFWHLLEVNQFNNVKSTNAQAAPFSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQ*****SFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLH****
Disordered Region (DISOPRED)
*YQNLLVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDIAKTGGNS****************************************IAIAVLLALAIIAIVIALFSR*******************************************************************************************AAPFSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDS**********FSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH
Disordered Region (DISEMBL)
MYQNLLVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDIAK*************************************SKIWQWVIIAIAVLLALAIIAIVIALFSRR**************SQRRAFTPLASQELTNDMAPESIKPFKGIDDYKGGQDYMGFHDYKSNQDHYKGNLFVFWHLLEVNQFNNVKSTNAQAAPFSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH
Disordered Region (DISPRO)
*YQNLLVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDIAKTGGNSWSSSPAPPPPPGTKPVTKRKASPFREGDESSSSKIWQWVIIAIAVLLALAIIAIVIALFSRRRSSPSSHFLDEERASQRRAFTPLASQELTNDMAPESIKPFKGIDDYKGGQDYMGFHDYKSNQDHYKGNL*************NVKSTNAQAAPFSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYQNLLVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDIAKTGGNSWSSSPAPPPPPGTKPVTKRKASPFREGDESSSSKIWQWVIIAIAVLLALAIIAIVIALFSRRRSSPSSHFLDEERASQRRAFTPLASQELTNDMAPESIKPFKGIDDYKGGQDYMGFHDYKSNQDHYKGNLFVFWHLLEVNQFNNVKSTNAQAAPFSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	495	2.2.26 [Sep-21-2011]
Q6R2K1	699	Protein STRUBBELIG-RECEPT	yes	no	0.979	0.693	0.513	1e-138
Q6R2K2	687	Protein STRUBBELIG-RECEPT	no	no	0.971	0.700	0.514	1e-128
Q9C8M9	719	Protein STRUBBELIG-RECEPT	no	no	0.969	0.667	0.411	3e-98
Q6R2J8	703	Protein STRUBBELIG-RECEPT	no	no	0.939	0.661	0.415	3e-95
Q6R2K3	776	Protein STRUBBELIG-RECEPT	no	no	0.941	0.600	0.333	3e-68
Q8RWZ1	768	Protein STRUBBELIG OS=Ara	no	no	0.949	0.611	0.310	2e-67
Q9LUL4	717	Protein STRUBBELIG-RECEPT	no	no	0.452	0.312	0.552	3e-67
Q06BH3	775	Protein STRUBBELIG-RECEPT	no	no	0.987	0.630	0.335	8e-65
Q9FG24	735	Protein STRUBBELIG-RECEPT	no	no	0.426	0.287	0.467	2e-50
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.759	0.315	0.272	5e-30

>sp|Q6R2K1|SRF5_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1

 Score =  491 bits (1264), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 253/493 (51%), Positives = 340/493 (68%), Gaps = 8/493 (1%)

Query: 6   LVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGIT 65
           LV   I  L      + +KTD+Q+ SALNVM+TSL+SPS+L  WKA GGDPC + W+G+ 
Sbjct: 5   LVRLVIVSLAITVTLLQAKTDNQEVSALNVMFTSLNSPSKLKGWKANGGDPCEDSWEGVK 64

Query: 66  CSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSEN 125
           C GSSVTE++LSG  L G  GY L+NLKS++  D+S NNLK +IPYQLPPN+ +LD SEN
Sbjct: 65  CKGSSVTELQLSGFELGGSRGYLLSNLKSLTTFDLSKNNLKGNIPYQLPPNIANLDFSEN 124

Query: 126 QFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFAS 185
           +  G VPYS+SQM  L+ +NLG N+LNG+L DMFQK  KLETLD S N+L+G+LP+SFA+
Sbjct: 125 ELDGNVPYSLSQMKNLQSINLGQNKLNGELPDMFQKLSKLETLDFSLNKLSGKLPQSFAN 184

Query: 186 LSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDIAK--TGGNSWSSS 243
           L+SLKKL+LQ+N+FTG INVL  L +D+LNVE+N+F GW+P ELKDI    TGGN WS+ 
Sbjct: 185 LTSLKKLHLQDNRFTGDINVLRNLAIDDLNVEDNQFEGWIPNELKDIDSLLTGGNDWSTE 244

Query: 244 PAPPPPPGTKPVTKRKASPFREGDESSSSKIWQWVIIAIAVLLALAIIAIVIALFSRRRS 303
            APPPPPG K    RK+S  ++G   ++      ++IA A L  L +I ++IAL S+++S
Sbjct: 245 TAPPPPPGVK--YGRKSSGSKDGGGITAG---TGMVIAGACLGVLVLIIVLIALVSKKKS 299

Query: 304 SPSSHFLDEERASQRRAFTPLASQELTNDMAPESIKPFKGIDDYKGGQDYMGFHDYKSNQ 363
           S S HF+DE+ +     F  L S     ++  +    +K       G + +     K  +
Sbjct: 300 SLSPHFIDEDNSHHTPKFKSLTSHGSAQELRVDFGNDYKDGKSGDSGDENIHRIGSKGLK 359

Query: 364 DHYKGNLFVFWHLLEVNQFNNVKSTNAQAA-PFSMADLLTATANFATGRLLGEGTIGRVY 422
            +    +  F      N+ N  ++T+ ++A  F ++DL +ATANF+ G LLGEG+IGRVY
Sbjct: 360 HYVSSRVMSFTDTEFANKLNAKRTTSTRSAVEFELSDLQSATANFSPGNLLGEGSIGRVY 419

Query: 423 RAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY 482
           RAKY DG+ LAVKKIDS+ F    SE  + IV ++S+IRH NIAELVG+CSEQGHN+L+Y
Sbjct: 420 RAKYSDGRTLAVKKIDSTLFDSGKSEGITPIVMSLSKIRHQNIAELVGYCSEQGHNMLVY 479

Query: 483 DYYRNGSLHEFLH 495
           +Y+RNGSLHEFLH
Sbjct: 480 EYFRNGSLHEFLH 492

Arabidopsis thaliana (taxid: 3702)

>sp|Q6R2K2|SRF4_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1

 Score =  457 bits (1176), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 260/505 (51%), Positives = 341/505 (67%), Gaps = 24/505 (4%)

Query: 6   LVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGIT 65
           +V  FI   G F+  VL+KTDSQD SALN  Y S++SPS+L  W + GGDPCG+ W GIT
Sbjct: 8   IVLVFIACFGIFTSVVLAKTDSQDVSALNDAYKSMNSPSKLKGWSSSGGDPCGDSWDGIT 67

Query: 66  CSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSEN 125
           C GSSVTEIK+SG GL+G LGYQL NLKS++YLDVS NNL  ++PYQLP  L +LD SEN
Sbjct: 68  CKGSSVTEIKVSGRGLSGSLGYQLGNLKSLTYLDVSKNNLNGNLPYQLPDKLTYLDGSEN 127

Query: 126 QFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFAS 185
            F+G VPYS+S M++L YLNLG N LNG+LSDMFQK  KLET+DLS NQLTG+LP+SFA+
Sbjct: 128 DFNGNVPYSVSLMNDLSYLNLGRNNLNGELSDMFQKLPKLETIDLSSNQLTGKLPQSFAN 187

Query: 186 LSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVPEELKDIA--KTGGNSWSS 242
           L+ LK L+LQ NQF GSIN L  LP +D++NV NN+F+GW+P ELK+I   +TGGN WSS
Sbjct: 188 LTGLKTLHLQENQFKGSINALRDLPQIDDVNVANNQFTGWIPNELKNIGNLETGGNKWSS 247

Query: 243 SPAPPPPPGTKPVTKRKASPFREGDESSSSKIWQWVIIAIAVLLALAIIAIVIALFSRRR 302
             AP PPPGT+ + +  +       ++    +   VIIA++ +  L + A +IAL SRR+
Sbjct: 248 GRAPSPPPGTRHIDRNSSGGGGGSSKA----LTLGVIIAVSSIGGLILFAGLIALISRRK 303

Query: 303 -SSPSSHFLDEERASQRRA--FTPLASQELTNDMAPESIKPFKGIDDYKGGQDYMGFHDY 359
            S+ SSHF D+E+ + R    FTP +SQ L  D   E  K  K +D     +        
Sbjct: 304 NSNDSSHFFDDEKGTNRSKPLFTPQSSQMLQFDNM-EEFKNQKTVDSNTSLETKPSVK-- 360

Query: 360 KSNQDHYKGNLFVFWHLLEVNQFNNV--KSTNAQAAP-------FSMADLLTATANFATG 410
           +++   +K +    +HL+   Q      +S+ +Q +P       FS+ADL    + F+  
Sbjct: 361 RTSSVSFKNS--PTFHLIPSTQVAATPDRSSTSQDSPDTRGVKAFSLADLQNTASCFSPN 418

Query: 411 RLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVG 470
           RLLGEGTIGRVY+AK+ DG+  AVK+IDSS   + N E FS IV +IS I H N+AELVG
Sbjct: 419 RLLGEGTIGRVYKAKFQDGRKFAVKEIDSSLLGKGNPEEFSHIVSSISSIHHKNMAELVG 478

Query: 471 FCSEQGHNILIYDYYRNGSLHEFLH 495
           +CSEQG N+L+Y+Y+ +GSLH FLH
Sbjct: 479 YCSEQGRNMLVYEYFTSGSLHRFLH 503

Acts as a direct positive regulator of leaf size but not leaf shape.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8M9|SRF6_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1

 Score =  359 bits (921), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 209/508 (41%), Positives = 300/508 (59%), Gaps = 28/508 (5%)

Query: 6   LVGFFIFYLGSFSCHVL-SKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGI 64
           +V  F   +  F    +   TD+ D SALN +++ +HSP+QL+ W A  GDPCG++W+G+
Sbjct: 7   VVALFTLCIVGFELRFIHGATDASDTSALNTLFSGMHSPAQLTQWTAAAGDPCGQNWRGV 66

Query: 65  TCSGSSVTEIKLSGLGLNGQLG-YQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLS 123
           TCSGS VT+IKLSGL L+G LG Y L  L S++ LD+S+NNL   +PYQ PPNL+ L+L+
Sbjct: 67  TCSGSRVTQIKLSGLELSGTLGGYMLDKLTSLTELDLSSNNLGGDLPYQFPPNLQRLNLA 126

Query: 124 ENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSF 183
            NQF+G   YS+SQ++ LKYLNLG NQ  GQ++  F K + L TLD S N  T  LP +F
Sbjct: 127 NNQFTGAASYSLSQITPLKYLNLGHNQFKGQIAIDFSKLDSLTTLDFSFNSFTNSLPATF 186

Query: 184 ASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDIAKT-GGNSWSS 242
           +SL+SLK LYLQNNQF+G+++VL  LPL+ LN+ NN F+GW+P  LK I     GNS+++
Sbjct: 187 SSLTSLKSLYLQNNQFSGTVDVLAGLPLETLNIANNDFTGWIPSSLKGITLIKDGNSFNT 246

Query: 243 SP-------------APPPPPGTKPVTKRKASPFREGDESSSSKIWQWVIIAIAVLLALA 289
            P             +P    G +  ++      R GD   S      +   I  LL + 
Sbjct: 247 GPAPPPPPGTPPIRGSPSRKSGGRE-SRSSDESTRNGDSKKSGIGAGAIAGIIISLLVVT 305

Query: 290 IIAIVIALFSRRRSSPSSHFLDEERASQRRAFTPLASQEL--TNDMAPESIKPFKGIDDY 347
            + +   LF R++S  SS  +D E+ +  + FT LAS +    N +   S    K +D  
Sbjct: 306 ALLVAFFLFRRKKSKRSSP-MDIEK-TDNQPFT-LASNDFHENNSIQSSSSVETKKLDTS 362

Query: 348 KGGQDYMGFHDYKSNQDHYKGNLFVFWHLLEVNQFNNVKSTNAQAAPFSMADLLTATANF 407
                     D   + D            + V +   V  +N +   +S+ADL  AT +F
Sbjct: 363 LSINLRPPPIDRNKSFDDEDST----RKPIAVKKSTVVVPSNVRL--YSVADLQIATGSF 416

Query: 408 ATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
           +   LLGEGT GRVYRA++ DGKVLAVKKIDSS      ++ F E+V  I+ + H N+ +
Sbjct: 417 SVDNLLGEGTFGRVYRAEFDDGKVLAVKKIDSSALPHGMTDDFIEMVSKIANLDHPNVTK 476

Query: 468 LVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           LVG+C+E G ++++Y++++NGSLH+FLH
Sbjct: 477 LVGYCAEHGQHLVVYEFHKNGSLHDFLH 504

Arabidopsis thaliana (taxid: 3702)

>sp|Q6R2J8|SRF8_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1

 Score =  349 bits (895), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 210/506 (41%), Positives = 294/506 (58%), Gaps = 41/506 (8%)

Query: 1   MYQNLLVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEH 60
           M+  LL   FI  +  FS  V   TD  D  AL V+YTSL+SPSQL+NWK GGGDPCGE 
Sbjct: 8   MFTVLL--LFIASISGFSV-VRCVTDPSDVQALQVLYTSLNSPSQLTNWKNGGGDPCGES 64

Query: 61  WKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHL 120
           WKGITC GS+V  I +S LG++G LGY L++LKS+  LDVS N++ D++PYQLPPNL  L
Sbjct: 65  WKGITCEGSAVVTIDISDLGVSGTLGYLLSDLKSLRKLDVSGNSIHDTLPYQLPPNLTSL 124

Query: 121 DLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELP 180
           +L+ N  SG +PYSIS M  L Y+N+  N L   + D+F  ++ L TLDLS N  +G+LP
Sbjct: 125 NLARNNLSGNLPYSISAMGSLSYMNVSGNSLTMSIGDIFADHKSLATLDLSHNNFSGDLP 184

Query: 181 RSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDIAKT--GGN 238
            S +++S+L  LY+QNNQ TGSI+VL  LPL  LNV NN F+G +P+EL  I      GN
Sbjct: 185 SSLSTVSTLSVLYVQNNQLTGSIDVLSGLPLKTLNVANNHFNGSIPKELSSIQTLIYDGN 244

Query: 239 SWSSSPAPPPP--PGTKPVTKRKASPFREGDESSSSK---IWQWVIIAIAV--LLALAII 291
           S+ + PA P P  PG K        P    +E SS     +   V+  I    L    II
Sbjct: 245 SFDNVPASPQPERPGKKETPSGSKKPKIGSEEKSSDSGKGLSGGVVTGIVFGSLFVAGII 304

Query: 292 AIV--IALFSRRRSSPSSHFLDEERASQRRAFTPLASQELTNDMAPESIKPFKGIDDYKG 349
           A+V  + L  ++R    S      RASQR    PL+    T ++  + +K    + D K 
Sbjct: 305 ALVLYLCLHKKKRKVRGS-----TRASQRS--LPLSG---TPEVQEQRVKSVASVADLKS 354

Query: 350 GQDYMGFHDYKSNQDHYKGNLFVFWHLLEVNQFNNVKSTNAQAAPFSMADLLTATANFAT 409
                     K   D    N             + ++S    A+ ++++ L  AT +F+ 
Sbjct: 355 SP------AEKVTVDRVMKN----------GSISRIRSP-ITASQYTVSSLQVATNSFSQ 397

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
             ++GEG++GRVYRA++P+GK++A+KKID++       ++F E V N+SR+RH NI  L 
Sbjct: 398 ENIIGEGSLGRVYRAEFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHPNIVPLA 457

Query: 470 GFCSEQGHNILIYDYYRNGSLHEFLH 495
           G+C+E G  +L+Y+Y  NG+L + LH
Sbjct: 458 GYCTEHGQRLLVYEYVGNGNLDDTLH 483

Arabidopsis thaliana (taxid: 3702)

>sp|Q6R2K3|SRF3_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1

 Score =  259 bits (663), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 185/554 (33%), Positives = 277/554 (50%), Gaps = 88/554 (15%)

Query: 22  LSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSGLGL 81
           L+ T+  D +A+N ++ +L +P  L  W A GGDPCGE W+GI C+ S +  I ++   L
Sbjct: 28  LAATNPDDVAAINGLFAALGAPV-LPGWIASGGDPCGEAWQGIICNVSDIISITVNAANL 86

Query: 82  NGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSEL 141
            G+LG  L    S+  +D SNN +  SIP  LP  L+H  LS NQF+G++P S+  +S L
Sbjct: 87  QGELGDNLAKFTSIRGIDFSNNRIGGSIPSTLPVTLQHFFLSANQFTGSIPESLGTLSFL 146

Query: 142 KYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG 201
             ++L  N L+G+L D+FQ    L  LD+S N ++G LP S  +L +L  L +QNNQ +G
Sbjct: 147 NDMSLNDNLLSGELPDVFQNLVGLINLDISSNNISGTLPPSMENLLTLTTLRVQNNQLSG 206

Query: 202 SINVLGKLPLDELNVENNKFSGWVPEELKDIAK----------TGGNSWSSS-------- 243
           +++VL  LPL +LN+ENN FSG +P++L  I K          T  NS S++        
Sbjct: 207 TLDVLQGLPLQDLNIENNLFSGPIPDKLLSIPKFLHEGNPFNATMINSTSTAPSLSPSLS 266

Query: 244 ---PAP-------PPPPGTKPVTKRKASPF-REGDESSSSK------IWQWVIIAIAVLL 286
              PAP       PPPP  +   K    P   EG  S +SK        + ++IA A +L
Sbjct: 267 PTKPAPTRPFSGVPPPPNERNRGKVADGPSDSEGSSSENSKGKNSSHTKKIILIAFAGVL 326

Query: 287 ALAIIAIVIAL----FSRRRSSPSS----HFLDEERASQRRAF---TPLASQELTNDMAP 335
              I+ + I L     +RRR   +     H +  +R S+  A    TP+      ++   
Sbjct: 327 VFIILVLAILLLLPKCARRREHANRVFKPHQVGADRGSRENALENGTPVLPPPGRSEKVQ 386

Query: 336 ESIKPFKGIDDYKGGQDYMGFHDYK--------SNQDHYKGNLFVFWHLLE--------- 378
              +PFK     K G++    HD +        S Q+    +  +               
Sbjct: 387 R--EPFK-----KAGEEPKVLHDLERLRRPAPISRQESQDIDFSMLMPPPPPPPPPPPPP 439

Query: 379 -----------VNQFNNVKSTNAQAAP------FSMADLLTATANFATGRLLGEGTIGRV 421
                      ++    VK T+ +  P      +S+A L   T +FA   L+G G +G V
Sbjct: 440 PLDEKVTVMPIISPERPVKKTSPKRLPLTSVKHYSIASLQQYTESFAQENLIGSGMLGSV 499

Query: 422 YRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI 481
           YRA+ P+GK+ AVKK+D    ++     F E+V NI  IRH+NI ELVG+C+E    +L+
Sbjct: 500 YRARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNIDMIRHSNIVELVGYCAEHDQRLLV 559

Query: 482 YDYYRNGSLHEFLH 495
           Y+Y  NG+L + LH
Sbjct: 560 YEYCSNGTLQDGLH 573

Not essential for epidermal patterning and not redundant with STRUBBELIG.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWZ1|SUB_ARATH Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1

 Score =  256 bits (655), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 174/561 (31%), Positives = 278/561 (49%), Gaps = 91/561 (16%)

Query: 25  TDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSGLGLNGQ 84
           T+ +D SA+N +Y +L +PS L +W A GGDPCGE W+G+ C  S++TEI++ G+ + G 
Sbjct: 26  TNLRDVSAINNLYITLGAPS-LHHWLAFGGDPCGEKWQGVVCDSSNITEIRIPGMKVGGG 84

Query: 85  LGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYL 144
           L   L +  S+  +D S+N++  +IP  LP ++++L LS N+F+G +P+++S +S+L  L
Sbjct: 85  LSDTLADFSSIQVMDFSSNHISGTIPQALPSSIRNLSLSSNRFTGNIPFTLSFLSDLSEL 144

Query: 145 NLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSIN 204
           +LGSN L+G++ D FQ+  KL  LDLS N L G LP S   L+SLK LYLQ+N+ TG+++
Sbjct: 145 SLGSNLLSGEIPDYFQQLSKLTKLDLSSNILEGHLPSSMGDLASLKILYLQDNKLTGTLD 204

Query: 205 VLGKLPLDELNVENNKFSGWVPEELKDIA--KTGGNSWSSS------------------- 243
           V+  L L +LNVENN FSG +P  L  I   K  G  +++S                   
Sbjct: 205 VIEDLFLTDLNVENNLFSGPIPPNLLKIPNFKKDGTPFNTSIITPPPPPVVDPPPATHRA 264

Query: 244 -PAPPPPP-------------------------------------GTKPVTKRKASPFRE 265
            P P  PP                                     G  P       P  +
Sbjct: 265 PPVPRIPPVSGVPPAPFAPFAPLQPQQHPPPSPPLVWSPPSSDNGGGDPWNSVSGQPTLQ 324

Query: 266 GDESSSS---KIW--QWVIIAIAVLLALAIIA-IVIALFSRRRSSPSSHFLDEERASQRR 319
               S S   K W  Q +I+ ++ +  + +++ + + L+   RS   + +    R   +R
Sbjct: 325 ISPPSGSGSGKFWSTQRIILVVSSVAIIVLVSGLCVTLWRCCRSKIYNRYYSGARKDLQR 384

Query: 320 AFTPLASQELTNDMAPESIKPF-KGIDDYKGGQDYMGFHDYKSNQDHYKGNLFVFWHLLE 378
            +      + T  M   S +P  K  D Y  G    G+   +  ++  +      ++  +
Sbjct: 385 PYFNKPPSQPTPTMGKVSREPMVKPFDGYGAGDRKYGYPMPQRAEESRRAMPPTSYYNKD 444

Query: 379 VN-------------QFNNVKSTNAQAAP-----------FSMADLLTATANFATGRLLG 414
           VN             Q N+  S  A   P           F++A L   T NF+   ++G
Sbjct: 445 VNTPQKPLQQPPRQFQSNDTASKRAAHFPPGLNSSSSATVFTIASLQQYTNNFSEENIIG 504

Query: 415 EGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE 474
           EG+IG VYRA+   GK LAVKK+ ++  +  +   F  +V N+ +++  +I EL+G+C+E
Sbjct: 505 EGSIGNVYRAELRHGKFLAVKKLSNTINRTQSDGEFLNLVSNVLKLKRGHILELLGYCNE 564

Query: 475 QGHNILIYDYYRNGSLHEFLH 495
            G  +L+Y+Y  NGSL + LH
Sbjct: 565 FGQRLLVYEYCPNGSLQDALH 585

Regulates the expression of transcription factors that define the cell fates. Seems to be required for the regulation of cell shape and the orientation of the mitotic division plane. Involved in root hair specification, in the formation of the outer integument and the shape of organs such as carpels and petals and is necessary for the shape and height of the stem.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUL4|SRF7_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1

 Score =  256 bits (653), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 126/228 (55%), Positives = 164/228 (71%), Gaps = 4/228 (1%)

Query: 5   LLVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGI 64
           LL+   + +  SF   +   TDS D SALN+M++S++SP QLS W A GGDPCG++WKGI
Sbjct: 10  LLILCIVGFEPSF---IHGATDSSDTSALNIMFSSMNSPGQLSQWTASGGDPCGQNWKGI 66

Query: 65  TCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSE 124
           TCSGS VT+IKL  LGL+G LG+ L  L SV+  D+SNNNL   +PYQLPPNL+ L+L+ 
Sbjct: 67  TCSGSRVTQIKLPSLGLSGSLGFMLDKLTSVTEFDMSNNNLGGDLPYQLPPNLERLNLAN 126

Query: 125 NQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFA 184
           NQF+G+  YSIS M+ LKYLNL  NQL  QL+  F K   L  LDLS N   G LP + +
Sbjct: 127 NQFTGSAQYSISMMAPLKYLNLAHNQLK-QLAIDFTKLTSLSILDLSSNAFIGSLPNTCS 185

Query: 185 SLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDI 232
           SL+S K +YLQNNQF+G+I++L  LPL+ LN+ NN+F+GW+P+ LK I
Sbjct: 186 SLTSAKSIYLQNNQFSGTIDILATLPLENLNIANNRFTGWIPDSLKGI 233

Arabidopsis thaliana (taxid: 3702)

>sp|Q06BH3|SRF1_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2

 Score =  248 bits (633), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 186/554 (33%), Positives = 268/554 (48%), Gaps = 65/554 (11%)

Query: 6   LVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGIT 65
            +GF  F L S     L+ T+  D +A+N ++ +L SP  L  W A GGDPCGE W+G+ 
Sbjct: 14  FLGFLSFALISLPSLSLALTNPDDVAAINSLFLALESP-LLPGWVASGGDPCGESWQGVL 72

Query: 66  CSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSEN 125
           C+ S V  I L    L G+LG  L    S+  +D SNN++  SIP  LP +L++L LS N
Sbjct: 73  CNASQVETIILISANLGGELGVGLNMFTSLKAMDFSNNHIGGSIPSTLPVSLQNLFLSGN 132

Query: 126 QFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFAS 185
            F+GT+P S+S +  L  ++L +N L+G++ D+FQ    +  +DLS N L+G LP S  +
Sbjct: 133 NFTGTIPESLSSLKSLSVMSLNNNLLSGKIPDVFQDLGLMINIDLSSNNLSGPLPPSMQN 192

Query: 186 LSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDIAK--TGGNSWSSS 243
           LS+L  L LQNN  +G ++VL  LPL +LNVENN F+G +PE+L  I     GGN ++ +
Sbjct: 193 LSTLTSLLLQNNHLSGELDVLQDLPLKDLNVENNLFNGPIPEKLLSIPNFIKGGNLFNVT 252

Query: 244 PA--------------------PPPPPGTK----------PVTKRKASPFREGDESS-SS 272
            A                    PP P  +           P     + P  +G E S +S
Sbjct: 253 IAPSPSPETPPSPTSPKRPFFGPPSPNASAGHGQAHVRSPPSDHHPSRPTPQGKEDSFTS 312

Query: 273 KIWQWVIIAIA---VLLALAIIAIVIALFSRRRSSP-------SSHFLDEERASQRRAFT 322
           K   W+ I  A   V+LAL  +        +R  S        +S +      S+  A  
Sbjct: 313 KRIIWISILGAFSFVVLALVCLLCGRKCLRKREDSEQLSKPHLTSEYGRAREGSRSNASM 372

Query: 323 PLASQELTNDMAPESIKPFKGIDDYKGGQDYMGFHDYK--SNQDHYKGNLFVFWHLLEVN 380
              S     D      +   G     GG +     + K  S++    GN     H   + 
Sbjct: 373 LPPSNTFNKDKEARPKERVGGASKLHGGAERSVGSESKQESHEIDMNGNAMDLMHPSSIP 432

Query: 381 QFNNV-------------KSTNAQAAP------FSMADLLTATANFATGRLLGEGTIGRV 421
               V             ++T+    P      F++A L   T +F+   L+G G +G V
Sbjct: 433 PIKRVIAKATEPAEASLKRTTSKSHGPLTAVKHFTVASLQQHTNSFSHENLIGTGMLGSV 492

Query: 422 YRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI 481
           YRA+ P GK+ AV+K+D           F E+V NI RIRH NI +LVGFCSE    +LI
Sbjct: 493 YRAELPGGKLFAVRKLDKKSPNHEEEGKFLELVNNIDRIRHANIVQLVGFCSEHSQRLLI 552

Query: 482 YDYYRNGSLHEFLH 495
           ++Y RNG+LH+ LH
Sbjct: 553 HEYCRNGTLHDLLH 566

Not essential for epidermal patterning and not redundant with STRUBBELIG.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG24|SRF2_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana GN=SRF2 PE=2 SV=1

 Score =  200 bits (509), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 100/214 (46%), Positives = 145/214 (67%), Gaps = 3/214 (1%)

Query: 21  VLSKTDSQ--DASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSG 78
           VL+KTD+   +  AL  +Y SL +P QL  W+  GGDPCGE W GI+CSGSS+ +++L  
Sbjct: 21  VLAKTDTDPLEVLALQDLYKSLRNPEQLRGWRLEGGDPCGEAWLGISCSGSSIVDLQLRE 80

Query: 79  LGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQM 138
           L L G LG QL +L ++  LDVS NNL+  IP+ LPPN  H++++ N  + ++P+S+  M
Sbjct: 81  LKLLGSLGNQLQHLHNLKILDVSFNNLEGEIPFGLPPNATHINMAYNNLTQSIPFSLPLM 140

Query: 139 SELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQ 198
           + L+ LNL  N L+G L ++F    +++ +DLS N LTG+LP SF +L +L  LYLQNN+
Sbjct: 141 TSLQSLNLSHNSLSGPLGNVF-SGLQIKEMDLSFNNLTGDLPSSFGTLMNLTSLYLQNNR 199

Query: 199 FTGSINVLGKLPLDELNVENNKFSGWVPEELKDI 232
            TGS+  L  LPL +LN+E+N+FSG +P   + I
Sbjct: 200 LTGSVIYLADLPLADLNIEDNQFSGIIPSHFQSI 233

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  132 bits (333), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 204/447 (45%), Gaps = 71/447 (15%)

Query: 71   VTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLK--HLDLSENQFS 128
            + EI LS   L+G++   L+ L +++ LD+S N L  SIP ++  +LK   L+L+ NQ +
Sbjct: 606  LVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLN 665

Query: 129  GTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSS 188
            G +P S   +  L  LNL  N+L+G +       ++L  +DLS N L+GEL    +++  
Sbjct: 666  GHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEK 725

Query: 189  LKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVPE--------ELKDIAKTG-- 236
            L  LY++ N+FTG I + LG L  L+ L+V  N  SG +P         E  ++AK    
Sbjct: 726  LVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLR 785

Query: 237  ----GNSWSSSPAPPPPPGTKPVTKRKASPFREGDESSSSKIWQWVIIAIAVLLALAIIA 292
                 +     P+     G K +  R      + + +     W      IA L+    I 
Sbjct: 786  GEVPSDGVCQDPSKALLSGNKELCGRVVGSDCKIEGTKLRSAW-----GIAGLMLGFTII 840

Query: 293  IVIALFSRRRSSPSSHFL---DEERASQRRAFTPLASQELTNDMAPESIKPFKGIDDYKG 349
            + + +FS RR + +       D ER  + R                      KG  D   
Sbjct: 841  VFVFVFSLRRWAMTKRVKQRDDPERMEESR---------------------LKGFVDQN- 878

Query: 350  GQDYMGFHDYKSNQDHYKGNLFVFWH-LLEVNQFNNVKSTNAQAAPFSMADLLTATANFA 408
                + F     +++    N+ +F   LL+V                 + D++ AT +F+
Sbjct: 879  ----LYFLSGSRSREPLSINIAMFEQPLLKVR----------------LGDIVEATDHFS 918

Query: 409  TGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAEL 468
               ++G+G  G VY+A  P  K +AVKK+  +  Q  N E  +E+ + + +++H N+  L
Sbjct: 919  KKNIIGDGGFGTVYKACLPGEKTVAVKKLSEAKTQ-GNREFMAEM-ETLGKVKHPNLVSL 976

Query: 469  VGFCSEQGHNILIYDYYRNGSLHEFLH 495
            +G+CS     +L+Y+Y  NGSL  +L 
Sbjct: 977  LGYCSFSEEKLLVYEYMVNGSLDHWLR 1003

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	495
255544472	694	strubbelig receptor, putative [Ricinus c	0.969	0.691	0.628	1e-160
224122722	681	predicted protein [Populus trichocarpa]	0.939	0.682	0.566	1e-144
224095113	672	predicted protein [Populus trichocarpa]	0.967	0.712	0.566	1e-143
297735687	694	unnamed protein product [Vitis vinifera]	1.0	0.713	0.552	1e-137
297842683	699	ATP binding protein [Arabidopsis lyrata	0.959	0.679	0.518	1e-137
357467661	790	Protein STRUBBELIG-RECEPTOR FAMILY [Medi	0.935	0.586	0.567	1e-136
79386544	699	STRUBBELIG-receptor family 5 [Arabidopsi	0.979	0.693	0.513	1e-136
225443466	1068	PREDICTED: protein STRUBBELIG-RECEPTOR F	0.915	0.424	0.566	1e-135
356523478	1038	PREDICTED: protein STRUBBELIG-RECEPTOR F	0.903	0.430	0.553	1e-130
449441524	662	PREDICTED: protein STRUBBELIG-RECEPTOR F	0.894	0.669	0.550	1e-128

>gi|255544472|ref|XP_002513297.1| strubbelig receptor, putative [Ricinus communis] gi|223547205|gb|EEF48700.1| strubbelig receptor, putative [Ricinus communis]

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 316/503 (62%), Positives = 381/503 (75%), Gaps = 23/503 (4%)

Query: 1   MYQNLLVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEH 60
           M+Q+L VGF I  LG  S    SKT+SQD SALNVM+T L+SPSQLS WK+ GGDPC + 
Sbjct: 1   MHQSL-VGFLIVSLGFLSTLAHSKTNSQDVSALNVMFTGLNSPSQLSGWKSSGGDPCDDS 59

Query: 61  WKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHL 120
           W+GITCSGSSVT+IKLSGLGL+G +GYQL+NLKSV+Y D+S NNL + IPYQLPPN  HL
Sbjct: 60  WEGITCSGSSVTQIKLSGLGLSGSMGYQLSNLKSVTYFDMSKNNLDNDIPYQLPPNTAHL 119

Query: 121 DLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELP 180
           DLS N FSG VPYSISQM++L+YLNLG NQLNGQLSDMFQK  KL++LDLS N L+G LP
Sbjct: 120 DLSNNGFSGNVPYSISQMTDLEYLNLGHNQLNGQLSDMFQKLPKLKSLDLSYNSLSGNLP 179

Query: 181 RSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDIA--KTGGN 238
           +SFASLSSL  L LQ+N+FTGSINVL  LPLD L+VE+N+FSGWVP+EL+ I   +TGGN
Sbjct: 180 QSFASLSSLNTLRLQDNKFTGSINVLAGLPLDTLDVEDNEFSGWVPDELEGIENIETGGN 239

Query: 239 SWSSSPAPPPPPGTKPVTKRKASPFREGDESSSSKI-WQWVIIAIAVLLALAIIAIVIAL 297
           SWSS PAPPPPPG K ++ ++    +E ++ +  K     + IA+ VL +L ++A++I L
Sbjct: 240 SWSSGPAPPPPPGAKSISAKQ----KEHEKGAGGKDGMSGLSIALIVLASLVVVALLIIL 295

Query: 298 FSRRRSSPSSHFLDEERASQRRAFTPLASQELTNDMAPESIKPFKGID-DYKGGQDYMGF 356
           FS R+SSPSSHFLDEERASQRRAFTPL+SQEL+ND      +PF  I  D K  Q     
Sbjct: 296 FSTRKSSPSSHFLDEERASQRRAFTPLSSQELSND--SHKTEPFDSIAIDIKTMQ----- 348

Query: 357 HDYKSNQDHYKGNLFVFWHLLEVNQF----NNVKSTNAQAAPFSMADLLTATANFATGRL 412
              KS    YK     F   L  N+F    N  ++T+ +A  +S+ADL TAT NFA GRL
Sbjct: 349 ---KSPSVSYKPPHSDFAQSLNDNEFASHLNARRNTSVRAVSYSLADLQTATGNFAMGRL 405

Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
           LGEG+IGRVYRAKYPDGKVLAVKKIDSS FQ    E FS IV +IS++ H NIAEL+G+C
Sbjct: 406 LGEGSIGRVYRAKYPDGKVLAVKKIDSSLFQSGRPEEFSGIVSSISKVYHPNIAELLGYC 465

Query: 473 SEQGHNILIYDYYRNGSLHEFLH 495
           SEQGHN+LIY+YYRNGSLH+FLH
Sbjct: 466 SEQGHNMLIYEYYRNGSLHDFLH 488

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122722|ref|XP_002330452.1| predicted protein [Populus trichocarpa] gi|222871864|gb|EEF08995.1| predicted protein [Populus trichocarpa]

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 281/496 (56%), Positives = 358/496 (72%), Gaps = 31/496 (6%)

Query: 6   LVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGIT 65
           LVGF I  LG  +  V SKTDS D SALNVM+TSL+SPS+LS WK+ GGDPCG+ W+GI 
Sbjct: 5   LVGFLIVSLGILTTLVHSKTDSDDVSALNVMFTSLNSPSKLSGWKSRGGDPCGDSWEGIQ 64

Query: 66  CSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSEN 125
           CSGSSVT+IKLSGLGL G LGYQL+NLKSV+Y DVS NNL + IPYQLPPN  +LDLS N
Sbjct: 65  CSGSSVTQIKLSGLGLTGSLGYQLSNLKSVTYFDVSKNNLNNDIPYQLPPNTVNLDLSNN 124

Query: 126 QFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFAS 185
            F+G VPYSISQM++L+YLNL  N++NGQLSDMFQK  KL+T+DLS N ++G LP+SF++
Sbjct: 125 GFTGNVPYSISQMTKLQYLNLNHNKINGQLSDMFQKLTKLKTMDLSHNSISGNLPQSFSA 184

Query: 186 LSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDI--AKTGGNSWSSS 243
           L SL   +LQ+N+FTG+++VL  LPL +LNVE+N+F+GWVP+ L+ I   +TGGNSWSS 
Sbjct: 185 LKSLSTFHLQDNKFTGTLDVLAALPLKDLNVEDNEFTGWVPDSLEGIDNLETGGNSWSSG 244

Query: 244 PAPPPPPGTKPVTKRKASPFREGDESSSSKIWQWVIIAIAVLLALAIIAIVIALFSRRRS 303
            AP          + K+S   E  +    K    + IA+ V+ +L ++ +++ LFSR+RS
Sbjct: 245 HAP----------RGKSSSAHE--KGGGKKGMSGLAIALIVVASLVVLVLLLLLFSRKRS 292

Query: 304 SPSSHFLDEERASQRRAFTPLASQELTNDMAPESIKPFKGIDDYKGGQDYMGFHDYKSNQ 363
           SPSS+FLDEE+ S+ RAFTPL+SQEL+N       K FKGI        Y+   D+   Q
Sbjct: 293 SPSSNFLDEEKGSRHRAFTPLSSQELSNHTIASIKKEFKGI--------YLT--DF---Q 339

Query: 364 DHYKGNLFVFWHLLEVNQF----NNVKSTNAQAAPFSMADLLTATANFATGRLLGEGTIG 419
            H+      F   +  NQF    N  ++T+ +A  FS+ DL TAT NFA GRL+GEG++G
Sbjct: 340 HHFMPPPSNFSQSINDNQFASCLNPGRNTSVRAVAFSLTDLQTATGNFAPGRLIGEGSLG 399

Query: 420 RVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI 479
           RVYRAKYPDGKVLAVK ID S  Q A  E FSEIV +IS++ H NIAEL G+C+EQGH++
Sbjct: 400 RVYRAKYPDGKVLAVKTIDLSLLQGAKPEDFSEIVTSISKVHHPNIAELAGYCAEQGHSM 459

Query: 480 LIYDYYRNGSLHEFLH 495
           LIY+Y+RNGSLH FLH
Sbjct: 460 LIYEYFRNGSLHGFLH 475

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095113|ref|XP_002310348.1| predicted protein [Populus trichocarpa] gi|222853251|gb|EEE90798.1| predicted protein [Populus trichocarpa]

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 285/503 (56%), Positives = 363/503 (72%), Gaps = 24/503 (4%)

Query: 1   MYQNLLVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEH 60
           MY +LL GF I  L   +  V SKTDS+D SALNVM+TSL+SPS+LS W++ GGDPCG+ 
Sbjct: 1   MYHSLL-GFLIVSLVILTTLVHSKTDSEDVSALNVMFTSLNSPSKLSGWQSSGGDPCGDS 59

Query: 61  WKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHL 120
           W+GI CSGSSVT+IKLSGLGL G LGYQL+NLKSV+Y DVS NNLK+ IPYQLPPN   L
Sbjct: 60  WEGIQCSGSSVTQIKLSGLGLTGSLGYQLSNLKSVTYFDVSKNNLKNDIPYQLPPNAATL 119

Query: 121 DLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELP 180
           DLS N F+G+VPYSISQM++L+ LNL  N+LNGQLSDMFQK  KL+TLDLS N ++G LP
Sbjct: 120 DLSNNGFTGSVPYSISQMTKLQNLNLNQNKLNGQLSDMFQKLSKLKTLDLSHNSISGNLP 179

Query: 181 RSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDI--AKTGGN 238
           +SF++LSSL  L+LQ+N+FTG+I+VL +LPL +LN+++N+F+GWVP+ L  I   +TGGN
Sbjct: 180 QSFSALSSLSTLHLQDNEFTGTIDVLARLPLKDLNIKDNEFTGWVPDSLNGIDNLETGGN 239

Query: 239 SWSSSPAPPPPPGTKPVTKRKASPFREGDESSSSKIWQWVIIAIAVLLALAIIAIVIALF 298
           +WSS PAP           R  S    G  S    +   + IA+ VL +L ++ ++I L 
Sbjct: 240 AWSSGPAP-----------RGKSSSAHGKGSGKGGM-NGLAIALIVLASLVVVGLLIILL 287

Query: 299 SRRRSSPSSHFLDEERASQRRAFTPLASQELTNDMAPESIKPFKGID--DYKGGQDYMGF 356
           S+RRSSPSS+FL+E+  S  RAFTPL+S EL+ND      K FK I+  +  G  D    
Sbjct: 288 SKRRSSPSSNFLEEDNGSWHRAFTPLSSHELSNDTRAAIKKEFKEIEPINLSGSIDIKNL 347

Query: 357 HDYKSNQDHYKGNLFVFWHLLEVNQF----NNVKSTNAQAAPFSMADLLTATANFATGRL 412
              K+    YK     F   +  N+F    N  ++T+ ++  FS+ DL TAT NFA+GRL
Sbjct: 348 Q--KAPSVGYKPPPSDFSESISDNEFAIRLNAGRNTSVRSIAFSLTDLQTATGNFASGRL 405

Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
           +GEG++G VYRAKYPDGKVLAVKKIDSS FQ A  E FSEI  +IS++ H NIAELVG+C
Sbjct: 406 IGEGSLGPVYRAKYPDGKVLAVKKIDSSLFQGAKQE-FSEIATSISKVHHQNIAELVGYC 464

Query: 473 SEQGHNILIYDYYRNGSLHEFLH 495
           SEQGH++LIY+Y+RNGSLHEFLH
Sbjct: 465 SEQGHSMLIYEYFRNGSLHEFLH 487

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735687|emb|CBI18374.3| unnamed protein product [Vitis vinifera]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 275/498 (55%), Positives = 346/498 (69%), Gaps = 3/498 (0%)

Query: 1   MYQNLLVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEH 60
           M  +LLV   + + G  +    S T + D SALNVMY SL+SPSQL+ WK+ GGDPCGE 
Sbjct: 1   MCPSLLVLMGVAFFGILTPIAHSTTVAPDVSALNVMYNSLNSPSQLTGWKSSGGDPCGES 60

Query: 61  WKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHL 120
           WKGI CSGSS+TEIKLSGLGL G +GYQL++L SV+  D+S NNLK  IPYQLPPN+ HL
Sbjct: 61  WKGIKCSGSSITEIKLSGLGLTGSMGYQLSSLTSVTNFDMSKNNLKGDIPYQLPPNVLHL 120

Query: 121 DLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELP 180
           DLS N F+G VPYSISQM++LKYLNLG N+LNGQLSDMF +  KL  +DLS N L+  LP
Sbjct: 121 DLSRNGFTGGVPYSISQMTDLKYLNLGHNKLNGQLSDMFGQLPKLTLMDLSFNTLSDNLP 180

Query: 181 RSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDI--AKTGGN 238
           +SF SLSSL  L LQNNQFTGSINVL  LPL++LN+ENN+F+GW+P  L +I   + GGN
Sbjct: 181 QSFGSLSSLTTLRLQNNQFTGSINVLADLPLNDLNIENNQFTGWIPNALNNIDNIEAGGN 240

Query: 239 SWSSSPAPPPPPGTKPVTKRKASPFREGDESSSSKIWQWVIIAIAVLLALAIIAIVIALF 298
           SWSS  APPPPPG        +       +         + IA  VL +L ++ I++ALF
Sbjct: 241 SWSSEQAPPPPPGASSKNTHASRSSSNSGKGGGKSGMSGLAIAGVVLGSLLVLVILLALF 300

Query: 299 SRRRSSPSSHFLDEERASQRRAFTPLASQELTNDMAPESIKPFKGIDDYKGGQDYMGFHD 358
           SRR S P SHFLDEER S  R FTP+ SQEL+NDM P +      +  Y    +     D
Sbjct: 301 SRRSSPPPSHFLDEERLSNHRPFTPIVSQELSNDMHPTNYNGNFHLHLYFKSSNSSNSMD 360

Query: 359 YKSNQDHYKGNLFVFWHLLEV-NQFNNVKSTNAQAAPFSMADLLTATANFATGRLLGEGT 417
            K+ Q      L     L ++ N+ +  +ST+ +A  +S+ADL +AT NFAT  LLGEG+
Sbjct: 361 VKALQKSPSIGLKRPPSLNDLANRLSVKRSTSIRATAYSLADLQSATRNFATASLLGEGS 420

Query: 418 IGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGH 477
           +GRVY+AKY DGKVLAVKKI SS FQ    + F E+V ++S++RH NIAE+VG+CSEQGH
Sbjct: 421 VGRVYKAKYADGKVLAVKKISSSFFQSGQKQGFPEVVSSVSKLRHPNIAEIVGYCSEQGH 480

Query: 478 NILIYDYYRNGSLHEFLH 495
           N+L+Y+Y+RNGSLH+FLH
Sbjct: 481 NMLMYEYFRNGSLHQFLH 498

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842683|ref|XP_002889223.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata] gi|297335064|gb|EFH65482.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 261/503 (51%), Positives = 341/503 (67%), Gaps = 28/503 (5%)

Query: 6   LVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGIT 65
           LV   I  L      V +KTD+Q+ S LNVM+TSL+SPS+L  WK  GGDPC   W+G+ 
Sbjct: 5   LVSLLIVSLAIIVTLVQAKTDNQEVSGLNVMFTSLNSPSKLKGWKPNGGDPCDGSWEGVK 64

Query: 66  CSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSEN 125
           C GSSVTE++LSG  L+G LGY L+NLKS++  D+S NNLK +IPYQLPPN+ +LD SEN
Sbjct: 65  CKGSSVTELQLSGFELSGSLGYLLSNLKSLTTFDLSKNNLKGNIPYQLPPNIVNLDFSEN 124

Query: 126 QFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFAS 185
           +  G VPYS+SQM  L+ +NLG N+LNG+L DMFQK  KL TLDLS NQL+G+LP+SFA+
Sbjct: 125 ELDGNVPYSLSQMKSLQSINLGQNKLNGELPDMFQKLSKLVTLDLSLNQLSGKLPQSFAN 184

Query: 186 LSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDIAK--TGGNSWSSS 243
           L+SLKKL+LQ N+FTG INVL  L +D+LNVE+N+F GW+P ELKDI    TGGN WS+ 
Sbjct: 185 LTSLKKLHLQENRFTGDINVLRNLAIDDLNVEDNQFEGWIPNELKDIDSLLTGGNDWSTE 244

Query: 244 PAPPPPPGTKPVTKRKASPFREGDESSSSKIWQWVIIAIAVLLALAIIAIVIALFSRRRS 303
            APPPPPG K    RK+S  ++G   ++      ++IA A L  L +IA++IAL S+++S
Sbjct: 245 TAPPPPPGVK--YGRKSSGSKDGGGVTAG---NGMMIAGACLGVLVLIAVLIALVSKKKS 299

Query: 304 SPSSHFLDEERASQRRAFTPLAS----QELTNDMAPESIKPFKGIDDYKGGQ----DYMG 355
           S S HF+DE+ +     F  + S    QEL  D            +DYK G+    D   
Sbjct: 300 SLSPHFIDEDNSHHTPKFKSITSHGSAQELRVDFG----------NDYKDGKSGDSDDEN 349

Query: 356 FHDYKSN--QDHYKGNLFVFWHLLEVNQFNNVKSTNAQA-APFSMADLLTATANFATGRL 412
            H   S   +      +  F      N+ N  ++T+ ++   F ++DL +ATANF+ G L
Sbjct: 350 IHRIGSKGLKHSVSSRVMSFTDTEFANKLNAKRTTSTRSTVEFELSDLQSATANFSPGNL 409

Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
           LGEG+IGRVYRAKY DG+ LAVKKIDS+ F    SE  + IV ++S+IRH NIAELVG+C
Sbjct: 410 LGEGSIGRVYRAKYSDGRTLAVKKIDSTLFDSGKSEGITPIVMSVSKIRHQNIAELVGYC 469

Query: 473 SEQGHNILIYDYYRNGSLHEFLH 495
           SEQGHN+L+Y+Y+RNGSLHEFLH
Sbjct: 470 SEQGHNMLVYEYFRNGSLHEFLH 492

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467661|ref|XP_003604115.1| Protein STRUBBELIG-RECEPTOR FAMILY [Medicago truncatula] gi|355505170|gb|AES86312.1| Protein STRUBBELIG-RECEPTOR FAMILY [Medicago truncatula]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 276/486 (56%), Positives = 343/486 (70%), Gaps = 23/486 (4%)

Query: 21  VLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSGLG 80
           V  KT SQD SALNVMYTSL+SPSQLS WK+ GGDPCGE+W+GI CSGSSVTEI LS LG
Sbjct: 111 VQCKTSSQDVSALNVMYTSLNSPSQLSGWKSSGGDPCGENWEGIKCSGSSVTEINLSDLG 170

Query: 81  LNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSE 140
           L+G LGYQL+ L SV+  D+SNNN K  IPYQLPPN +++DLS+N F+G +PYSI QM E
Sbjct: 171 LSGSLGYQLSQLTSVTDFDLSNNNFKGDIPYQLPPNARNVDLSKNAFTGNIPYSIGQMKE 230

Query: 141 LKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT 200
           L  LNL  N+LN QL DMF    KL+ LD+S N L+GELP+S  S +SLKK+YLQNNQ +
Sbjct: 231 LTSLNLAHNKLNNQLGDMFTTLTKLKQLDVSFNSLSGELPQSLKSATSLKKIYLQNNQLS 290

Query: 201 GSINVLGKLPLDELNVENNKFSGWVPEELKDI--AKTGGNSWSSSPAPPPPPGTKPVTKR 258
           GSINVL   PLD++NVENNKF+GW+PEELKDI   +TGGNSW + PAPPPPPGT P+  +
Sbjct: 291 GSINVLAYPPLDDVNVENNKFTGWIPEELKDINSLQTGGNSWKTGPAPPPPPGTPPI--K 348

Query: 259 KASPFREGDESSSSKIWQWVIIAIAVLLALAIIAIVIALFSRRRSSPSSHFLDEERASQR 318
             S  +EG   SS+ +   +IIA     AL +I ++ ALF R+ S  SS F+DEER SQ 
Sbjct: 349 HHSEEKEG--KSSNSLVTGLIIAGIAFGALVVIILIAALFKRKSSYASSRFIDEERRSQH 406

Query: 319 RAFTPLASQELTNDMAPESI--KPFKGID----DYKGGQDYMGFHDYKSNQD---HYKGN 369
           R+FTPLASQELT D+       K FK +D    D    Q         S  D   ++  N
Sbjct: 407 RSFTPLASQELTKDLGGNDTEYKGFKAMDSTSIDIMALQKNPSVSVRSSVSDCVQNFNDN 466

Query: 370 LFVFWHLLEVNQFNNVKSTNAQAAPFSMADLLTATANFATGRLLGEGTIGRVYRAKYPDG 429
            F        N+ N+ KS + +   FS+ +L T TANFA+GRLLGEG+IG VYRAKY DG
Sbjct: 467 EF-------ANRLNSRKSASIRCTAFSLGELQTGTANFASGRLLGEGSIGPVYRAKYADG 519

Query: 430 KVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGS 489
           KVLAVKK++ S     + E F++I+ N+ ++RH NIAELVG+CSEQGH +L+Y+Y+RNGS
Sbjct: 520 KVLAVKKLNPSLIDEGSPEEFTQILSNMCKLRHPNIAELVGYCSEQGH-MLVYEYFRNGS 578

Query: 490 LHEFLH 495
           LH+FLH
Sbjct: 579 LHDFLH 584

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79386544|ref|NP_178019.2| STRUBBELIG-receptor family 5 [Arabidopsis thaliana] gi|75127759|sp|Q6R2K1.1|SRF5_ARATH RecName: Full=Protein STRUBBELIG-RECEPTOR FAMILY 5; AltName: Full=Leucine-rich repeat receptor kinase-like protein SRF5; Flags: Precursor gi|41323409|gb|AAR99873.1| strubbelig receptor family 5 [Arabidopsis thaliana] gi|224589489|gb|ACN59278.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gi|332198067|gb|AEE36188.1| STRUBBELIG-receptor family 5 [Arabidopsis thaliana]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 253/493 (51%), Positives = 340/493 (68%), Gaps = 8/493 (1%)

Query: 6   LVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGIT 65
           LV   I  L      + +KTD+Q+ SALNVM+TSL+SPS+L  WKA GGDPC + W+G+ 
Sbjct: 5   LVRLVIVSLAITVTLLQAKTDNQEVSALNVMFTSLNSPSKLKGWKANGGDPCEDSWEGVK 64

Query: 66  CSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSEN 125
           C GSSVTE++LSG  L G  GY L+NLKS++  D+S NNLK +IPYQLPPN+ +LD SEN
Sbjct: 65  CKGSSVTELQLSGFELGGSRGYLLSNLKSLTTFDLSKNNLKGNIPYQLPPNIANLDFSEN 124

Query: 126 QFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFAS 185
           +  G VPYS+SQM  L+ +NLG N+LNG+L DMFQK  KLETLD S N+L+G+LP+SFA+
Sbjct: 125 ELDGNVPYSLSQMKNLQSINLGQNKLNGELPDMFQKLSKLETLDFSLNKLSGKLPQSFAN 184

Query: 186 LSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDIAK--TGGNSWSSS 243
           L+SLKKL+LQ+N+FTG INVL  L +D+LNVE+N+F GW+P ELKDI    TGGN WS+ 
Sbjct: 185 LTSLKKLHLQDNRFTGDINVLRNLAIDDLNVEDNQFEGWIPNELKDIDSLLTGGNDWSTE 244

Query: 244 PAPPPPPGTKPVTKRKASPFREGDESSSSKIWQWVIIAIAVLLALAIIAIVIALFSRRRS 303
            APPPPPG K    RK+S  ++G   ++      ++IA A L  L +I ++IAL S+++S
Sbjct: 245 TAPPPPPGVK--YGRKSSGSKDGGGITAG---TGMVIAGACLGVLVLIIVLIALVSKKKS 299

Query: 304 SPSSHFLDEERASQRRAFTPLASQELTNDMAPESIKPFKGIDDYKGGQDYMGFHDYKSNQ 363
           S S HF+DE+ +     F  L S     ++  +    +K       G + +     K  +
Sbjct: 300 SLSPHFIDEDNSHHTPKFKSLTSHGSAQELRVDFGNDYKDGKSGDSGDENIHRIGSKGLK 359

Query: 364 DHYKGNLFVFWHLLEVNQFNNVKSTNAQAA-PFSMADLLTATANFATGRLLGEGTIGRVY 422
            +    +  F      N+ N  ++T+ ++A  F ++DL +ATANF+ G LLGEG+IGRVY
Sbjct: 360 HYVSSRVMSFTDTEFANKLNAKRTTSTRSAVEFELSDLQSATANFSPGNLLGEGSIGRVY 419

Query: 423 RAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY 482
           RAKY DG+ LAVKKIDS+ F    SE  + IV ++S+IRH NIAELVG+CSEQGHN+L+Y
Sbjct: 420 RAKYSDGRTLAVKKIDSTLFDSGKSEGITPIVMSLSKIRHQNIAELVGYCSEQGHNMLVY 479

Query: 483 DYYRNGSLHEFLH 495
           +Y+RNGSLHEFLH
Sbjct: 480 EYFRNGSLHEFLH 492

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443466|ref|XP_002269717.1| PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 5-like [Vitis vinifera]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 269/475 (56%), Positives = 332/475 (69%), Gaps = 22/475 (4%)

Query: 30  ASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSGLGLNGQLGYQL 89
            SALNVMY SL+SPSQL+ WK+ GGDPCGE WKGI CSGSS+TEIKLSGLGL G +GYQL
Sbjct: 411 VSALNVMYNSLNSPSQLTGWKSSGGDPCGESWKGIKCSGSSITEIKLSGLGLTGSMGYQL 470

Query: 90  TNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSN 149
           ++L SV+  D+S NNLK  IPYQLPPN+ HLDLS N F+G VPYSISQM++LKYLNLG N
Sbjct: 471 SSLTSVTNFDMSKNNLKGDIPYQLPPNVLHLDLSRNGFTGGVPYSISQMTDLKYLNLGHN 530

Query: 150 QLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKL 209
           +LNGQLSDMF +  KL  +DLS N L+  LP+SF SLSSL  L LQNNQFTGSINVL  L
Sbjct: 531 KLNGQLSDMFGQLPKLTLMDLSFNTLSDNLPQSFGSLSSLTTLRLQNNQFTGSINVLADL 590

Query: 210 PLDELNVENNKFSGWVPEELKDI--AKTGGNSWSSSPAPPPPPGTKPVTKRKASPFREGD 267
           PL++LN+ENN+F+GW+P  L +I   + GGNSWSS  APPPPPG        +       
Sbjct: 591 PLNDLNIENNQFTGWIPNALNNIDNIEAGGNSWSSEQAPPPPPGASSKNTHASRSSSNSG 650

Query: 268 ESSSSKIWQWVIIAIAVLLALAIIAIVIALFSRRRSSPSSHFLDEERASQRRAFTPLASQ 327
           +         + IA  VL +L ++ I++ALFSRR S P SHFLDEER S  R FTP+ SQ
Sbjct: 651 KGGGKSGMSGLAIAGVVLGSLLVLVILLALFSRRSSPPPSHFLDEERLSNHRPFTPIVSQ 710

Query: 328 ELTNDMAPESIKPFKGID-----DYKGGQD--YMGFHDYKSNQDHYKGNLFVFWHLLEVN 380
           EL+NDM P +   FK  +     D K  Q    +G     S  D               N
Sbjct: 711 ELSNDMHPTNYNDFKSSNSSNSMDVKALQKSPSIGLKRPPSLNDL-------------AN 757

Query: 381 QFNNVKSTNAQAAPFSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSS 440
           + +  +ST+ +A  +S+ADL +AT NFAT  LLGEG++GRVY+AKY DGKVLAVKKI SS
Sbjct: 758 RLSVKRSTSIRATAYSLADLQSATRNFATASLLGEGSVGRVYKAKYADGKVLAVKKISSS 817

Query: 441 HFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
            FQ    + F E+V ++S++RH NIAE+VG+CSEQGHN+L+Y+Y+RNGSLH+FLH
Sbjct: 818 FFQSGQKQGFPEVVSSVSKLRHPNIAEIVGYCSEQGHNMLMYEYFRNGSLHQFLH 872

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523478|ref|XP_003530365.1| PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 5-like [Glycine max]

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 260/470 (55%), Positives = 325/470 (69%), Gaps = 23/470 (4%)

Query: 31  SALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSGLGLNGQLGYQLT 90
           SALNVMYTSL+SPS+LS WK+ GGDPCG+ W+GI CSGSSVTEI LS LGL+G +GYQL+
Sbjct: 391 SALNVMYTSLNSPSKLSGWKSSGGDPCGDSWEGIKCSGSSVTEINLSDLGLSGSMGYQLS 450

Query: 91  NLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQ 150
           +LKSV+  D+SNNN K  IPYQLPPN +++DLS+N F+G++PYS S+M +L YLNL  NQ
Sbjct: 451 SLKSVTDFDLSNNNFKGDIPYQLPPNARYIDLSKNDFTGSIPYSFSEMDDLNYLNLAHNQ 510

Query: 151 LNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP 210
           L  QL DMF K  KL+ LD+S N L+G+LP+S  SL SL+KL+LQNNQFTGS+NVL  LP
Sbjct: 511 LKNQLGDMFGKLSKLKQLDVSFNSLSGDLPQSLKSLKSLEKLHLQNNQFTGSVNVLASLP 570

Query: 211 LDELNVENNKFSGWVPEELKDI--AKTGGNSWSSSPAPPPPPGTKPVTKRKASPFREGDE 268
           L++LNVENNKF+GWVPEELK+I   +TGGNSWSS           P       P +  ++
Sbjct: 571 LEDLNVENNKFTGWVPEELKEINNLQTGGNSWSSG--------PAPPPPPGTPPIKHSEK 622

Query: 269 SSSSKIWQWVIIAIAVLLALAIIAIVIALFSRRRSSPSSHFLDEERASQRRAFTPLASQE 328
            +   +   + IA      LA+I IV+AL  RR S  SSHF+DE+R SQ R+FTPLASQE
Sbjct: 623 KNDKSVISGIAIAGIAFGVLAVIIIVVALSKRRSSKTSSHFIDEDRNSQHRSFTPLASQE 682

Query: 329 LTNDMAPESIKPFKGIDDYKGGQDYMGFHDYKSNQD---HYKGNLFVFWHLLEVNQFNNV 385
           L+ D   +S+       D K  Q         S  D    +  N F        N+ N+ 
Sbjct: 683 LSKDSGHDSMDSTS--IDVKALQKSPSVSVRSSVSDCVQSFNDNEF-------ANRLNSK 733

Query: 386 KSTNAQAAPFSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRA 445
           +ST+ +   FS A+L +ATANFA+GRLLGEG+IG VYRAKY DGKVLAVKKI+ S     
Sbjct: 734 RSTSIRVTTFSHAELQSATANFASGRLLGEGSIGCVYRAKYADGKVLAVKKINPSLLHGG 793

Query: 446 NSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
            SE FS+IV  IS++ H NI ELVG+CSE  H +LIYDY+RNGSLH+FLH
Sbjct: 794 PSEEFSQIVSRISKLHHPNIVELVGYCSEPEH-MLIYDYFRNGSLHDFLH 842

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441524|ref|XP_004138532.1| PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 5-like [Cucumis sativus] gi|449496770|ref|XP_004160222.1| PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 5-like [Cucumis sativus]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 260/472 (55%), Positives = 329/472 (69%), Gaps = 29/472 (6%)

Query: 36  MYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSV 95
           M++SL+SPSQLS W + GGDPCG  W+GI CSGSSVTEI LS  GL+G +GYQL+NL SV
Sbjct: 1   MFSSLNSPSQLSGWGSSGGDPCGNSWEGIQCSGSSVTEISLSDFGLSGSMGYQLSNLASV 60

Query: 96  SYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQL 155
           +Y D+S NNL   IPYQLPPN  H+DLS N F+G+VPYSISQMSEL++LNLG N+L+ QL
Sbjct: 61  TYFDLSKNNLNGEIPYQLPPNAVHIDLSGNSFTGSVPYSISQMSELEFLNLGHNKLSNQL 120

Query: 156 SDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELN 215
           SDMF K  KL+ LDLS N ++G LP+SF  LSSL  L++Q+N+F+GSIN L  LPLD+LN
Sbjct: 121 SDMFGKLAKLKRLDLSFNSISGNLPQSFKKLSSLTVLHIQDNKFSGSINFLADLPLDDLN 180

Query: 216 VENNKFSGWVPEELKDI--AKTGGNSWSSSPAPPPPPGTKPVTKRKASPFREGDESSSSK 273
           V NNKF+GW+PE L+DI   +T GNSWS+ PAPPPPPGT   T +K++  +E     SS 
Sbjct: 181 VANNKFTGWIPESLEDIDNLETVGNSWSTGPAPPPPPGTVSPTNKKSN--KEESNKISSA 238

Query: 274 IWQWVIIAIAVLLALAIIAIVIALFSRRRSSPSSHFLDEERASQRRAFTPLASQELT--N 331
           +   ++IA   +  LA+IAIVI + ++RR    SH+LDE+  +Q R+FTPL SQEL   N
Sbjct: 239 VKSGLVIAGIAMGVLAVIAIVIGMTTKRRRH-VSHYLDED-TNQHRSFTPLTSQELAKGN 296

Query: 332 DMAPESIKPF--KGIDDYKGG------QDYMGFHDYKSNQDHYKGNLFVFWHLLEVNQFN 383
           D      K F      D KGG              +  NQ   + N             +
Sbjct: 297 DNNGIDRKSFTSDASVDIKGGVVRPPPAPLDSIRSFSDNQFASRLN-------------S 343

Query: 384 NVKSTNAQAAPFSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQ 443
             +ST+ +A  +S+ DL TATANF+  RLLGEGTIGRVY+AKY DGKVLAVKKIDS+ FQ
Sbjct: 344 KRRSTSFRAISYSLVDLQTATANFSPSRLLGEGTIGRVYKAKYGDGKVLAVKKIDSTVFQ 403

Query: 444 RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
              +E FSE+V  IS++ HTNIAE+VGFCSEQGH++ IY+++ NGSLHEFLH
Sbjct: 404 GRRTEEFSEVVAIISKLNHTNIAEVVGFCSEQGHHLFIYEFFTNGSLHEFLH 455

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	495
TAIR|locus:2207280	699	SRF5 "STRUBBELIG-receptor fami	0.488	0.346	0.512	2.2e-103
TAIR|locus:2089210	687	SRF4 "STRUBBELIG-receptor fami	0.973	0.701	0.436	4.1e-97
TAIR|locus:2091015	717	SRF7 "STRUBBELIG-receptor fami	0.496	0.343	0.461	4.4e-86
TAIR|locus:2024837	720	SRF6 "STRUBBELIG-receptor fami	0.543	0.373	0.420	3.1e-83
TAIR|locus:2120683	703	SRF8 "STRUBBELIG-receptor fami	0.462	0.325	0.491	5.8e-80
TAIR|locus:2051404	775	SRF1 "STRUBBELIG-receptor fami	0.517	0.330	0.370	6.6e-62
TAIR|locus:2170219	735	SRF2 "STRUBBELIG-receptor fami	0.426	0.287	0.392	6.7e-61
TAIR|locus:2202084	768	SUB "STRUBBELIG" [Arabidopsis	0.418	0.269	0.408	8.9e-60
TAIR|locus:2125566	776	SRF3 "STRUBBELIG-receptor fami	0.454	0.289	0.378	2.1e-58
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.454	0.188	0.288	1.1e-28

TAIR|locus:2207280 SRF5 "STRUBBELIG-receptor family 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.2e-103, Sum P(2) = 2.2e-103
 Identities = 126/246 (51%), Positives = 163/246 (66%)

Query:    23 SKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKXXXXXXX 82
             +KTD+Q+ SALNVM+TSL+SPS+L  WKA GGDPC + W+G+ C GSSVTE++       
Sbjct:    22 AKTDNQEVSALNVMFTSLNSPSKLKGWKANGGDPCEDSWEGVKCKGSSVTELQLSGFELG 81

Query:    83 XXXXXXXXXXKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELK 142
                       KS++  D+S NNLK +IPYQLPPN+ +LD SEN+  G VPYS+SQM  L+
Sbjct:    82 GSRGYLLSNLKSLTTFDLSKNNLKGNIPYQLPPNIANLDFSENELDGNVPYSLSQMKNLQ 141

Query:   143 YXXXXXXXXXXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGS 202
                           DMFQK  KLETLD S N+L+G+LP+SFA+L+SLKKL+LQ+N+FTG 
Sbjct:   142 SINLGQNKLNGELPDMFQKLSKLETLDFSLNKLSGKLPQSFANLTSLKKLHLQDNRFTGD 201

Query:   203 INVLGKLPLDELNVENNKFSGWVPEELKDIAK--TGGNXXXXXXXXXXXXGTKPVTKRKA 260
             INVL  L +D+LNVE+N+F GW+P ELKDI    TGGN            G K    RK+
Sbjct:   202 INVLRNLAIDDLNVEDNQFEGWIPNELKDIDSLLTGGNDWSTETAPPPPPGVK--YGRKS 259

Query:   261 SPFREG 266
             S  ++G
Sbjct:   260 SGSKDG 265

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2089210 SRF4 "STRUBBELIG-receptor family 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
 Identities = 220/504 (43%), Positives = 287/504 (56%)

Query:     6 LVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGIT 65
             +V  FI   G F+  VL+KTDSQD SALN  Y S++SPS+L  W + GGDPCG+ W GIT
Sbjct:     8 IVLVFIACFGIFTSVVLAKTDSQDVSALNDAYKSMNSPSKLKGWSSSGGDPCGDSWDGIT 67

Query:    66 CSGSSVTEIKXXXXXXXXXXXXXXXXXKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSEN 125
             C GSSVTEIK                 KS++YLDVS NNL  ++PYQLP  L +LD SEN
Sbjct:    68 CKGSSVTEIKVSGRGLSGSLGYQLGNLKSLTYLDVSKNNLNGNLPYQLPDKLTYLDGSEN 127

Query:   126 QFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETLDLSKNQLTGELPRSFAS 185
              F+G VPYS+S M++L Y             DMFQK  KLET+DLS NQLTG+LP+SFA+
Sbjct:   128 DFNGNVPYSVSLMNDLSYLNLGRNNLNGELSDMFQKLPKLETIDLSSNQLTGKLPQSFAN 187

Query:   186 LSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVPEELKDIA--KTGGNXXXX 242
             L+ LK L+LQ NQF GSIN L  LP +D++NV NN+F+GW+P ELK+I   +TGGN    
Sbjct:   188 LTGLKTLHLQENQFKGSINALRDLPQIDDVNVANNQFTGWIPNELKNIGNLETGGNKWSS 247

Query:   243 XXXXXXXXGTKPVTKRKASPFREGDESSSSKIWQWXXXXXXXXXXXXXXXXXXXXFXXXX 302
                     GT+ + +  +     G  SS +                              
Sbjct:   248 GRAPSPPPGTRHIDRNSSGG---GGGSSKALTLGVIIAVSSIGGLILFAGLIALISRRKN 304

Query:   303 XXXXXHFLDEERASQRRA--FTPLASQELTNDMAPESIKPFKGIDDYKGGQDYMGFHDYK 360
                  HF D+E+ + R    FTP +SQ L  D   E  K  K +D     +        +
Sbjct:   305 SNDSSHFFDDEKGTNRSKPLFTPQSSQMLQFDNM-EEFKNQKTVDSNTSLETKPSVK--R 361

Query:   361 SNQDHYKGNLFVFWHLLEVNQFNNV--KSTNAQAAP-------FSMADLLTATANFATGR 411
             ++   +K N   F HL+   Q      +S+ +Q +P       FS+ADL    + F+  R
Sbjct:   362 TSSVSFK-NSPTF-HLIPSTQVAATPDRSSTSQDSPDTRGVKAFSLADLQNTASCFSPNR 419

Query:   412 LLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
             LLGEGTIGRVY+AK+ DG+  AVK+IDSS   + N E FS IV +IS I H N+AELVG+
Sbjct:   420 LLGEGTIGRVYKAKFQDGRKFAVKEIDSSLLGKGNPEEFSHIVSSISSIHHKNMAELVGY 479

Query:   472 CSEQGHNILIYDYYRNGSLHEFLH 495
             CSEQG N+L+Y+Y+ +GSLH FLH
Sbjct:   480 CSEQGRNMLVYEYFTSGSLHRFLH 503

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2091015 SRF7 "STRUBBELIG-receptor family 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 4.4e-86, Sum P(2) = 4.4e-86
 Identities = 115/249 (46%), Positives = 153/249 (61%)

Query:    25 TDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKXXXXXXXXX 84
             TDS D SALN+M++S++SP QLS W A GGDPCG++WKGITCSGS VT+IK         
Sbjct:    27 TDSSDTSALNIMFSSMNSPGQLSQWTASGGDPCGQNWKGITCSGSRVTQIKLPSLGLSGS 86

Query:    85 XXXXXXXXKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYX 144
                      SV+  D+SNNNL   +PYQLPPNL+ L+L+ NQF+G+  YSIS M+ LKY 
Sbjct:    87 LGFMLDKLTSVTEFDMSNNNLGGDLPYQLPPNLERLNLANNQFTGSAQYSISMMAPLKYL 146

Query:   145 XXXXXXXXXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSIN 204
                         D F K   L  LDLS N   G LP + +SL+S K +YLQNNQF+G+I+
Sbjct:   147 NLAHNQLKQLAID-FTKLTSLSILDLSSNAFIGSLPNTCSSLTSAKSIYLQNNQFSGTID 205

Query:   205 VLGKLPLDELNVENNKFSGWVPEELKDI-AKTGGNXXXXXXXXXXXXGTKPVTKRKASPF 263
             +L  LPL+ LN+ NN+F+GW+P+ LK I  +  GN            GT P++K   +P 
Sbjct:   206 ILATLPLENLNIANNRFTGWIPDSLKGINLQKDGNLLNSGPAPPPPPGTPPISKSSPTP- 264

Query:   264 REGDESSSS 272
             + G+  + S
Sbjct:   265 KSGNRGNRS 273

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2024837 SRF6 "STRUBBELIG-receptor family 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 550 (198.7 bits), Expect = 3.1e-83, Sum P(2) = 3.1e-83
 Identities = 117/278 (42%), Positives = 160/278 (57%)

Query:     1 MYQN-LLVGFFIFYLGSFSCHVL-SKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCG 58
             M +N  +V  F   +  F    +   TD+ D SALN +++ +HSP+QL+ W A  GDPCG
Sbjct:     1 MRENWAVVALFTLCIVGFELRFIHGATDASDTSALNTLFSGMHSPAQLTQWTAAAGDPCG 60

Query:    59 EHWKGITCSGSSVTEIKXXXXXXXXXXXXXXXXX-KSVSYLDVSNNNLKDSIPYQLPPNL 117
             ++W+G+TCSGS VT+IK                   S++ LD+S+NNL   +PYQ PPNL
Sbjct:    61 QNWRGVTCSGSRVTQIKLSGLELSGTLGGYMLDKLTSLTELDLSSNNLGGDLPYQFPPNL 120

Query:   118 KHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETLDLSKNQLTG 177
             + L+L+ NQF+G   YS+SQ++ LKY               F K + L TLD S N  T 
Sbjct:   121 QRLNLANNQFTGAASYSLSQITPLKYLNLGHNQFKGQIAIDFSKLDSLTTLDFSFNSFTN 180

Query:   178 ELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDIAKT-G 236
              LP +F+SL+SLK LYLQNNQF+G+++VL  LPL+ LN+ NN F+GW+P  LK I     
Sbjct:   181 SLPATFSSLTSLKSLYLQNNQFSGTVDVLAGLPLETLNIANNDFTGWIPSSLKGITLIKD 240

Query:   237 GNXXXXXXXXXXXXGTKPVTKRKASPFRE--GDESSSS 272
             GN            GT P+   + SP R+  G ES SS
Sbjct:   241 GNSFNTGPAPPPPPGTPPI---RGSPSRKSGGRESRSS 275

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2120683 SRF8 "STRUBBELIG-receptor family 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 553 (199.7 bits), Expect = 5.8e-80, Sum P(2) = 5.8e-80
 Identities = 114/232 (49%), Positives = 143/232 (61%)

Query:     1 MYQNLLVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEH 60
             M+  LL+  FI  +  FS  V   TD  D  AL V+YTSL+SPSQL+NWK GGGDPCGE 
Sbjct:     8 MFTVLLL--FIASISGFSV-VRCVTDPSDVQALQVLYTSLNSPSQLTNWKNGGGDPCGES 64

Query:    61 WKGITCSGSSVTEIKXXXXXXXXXXXXXXXXXKSVSYLDVSNNNLKDSIPYQLPPNLKHL 120
             WKGITC GS+V  I                  KS+  LDVS N++ D++PYQLPPNL  L
Sbjct:    65 WKGITCEGSAVVTIDISDLGVSGTLGYLLSDLKSLRKLDVSGNSIHDTLPYQLPPNLTSL 124

Query:   121 DLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETLDLSKNQLTGELP 180
             +L+ N  SG +PYSIS M  L Y             D+F  ++ L TLDLS N  +G+LP
Sbjct:   125 NLARNNLSGNLPYSISAMGSLSYMNVSGNSLTMSIGDIFADHKSLATLDLSHNNFSGDLP 184

Query:   181 RSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDI 232
              S +++S+L  LY+QNNQ TGSI+VL  LPL  LNV NN F+G +P+EL  I
Sbjct:   185 SSLSTVSTLSVLYVQNNQLTGSIDVLSGLPLKTLNVANNHFNGSIPKELSSI 236

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009624 "response to nematode" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2051404 SRF1 "STRUBBELIG-receptor family 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 6.6e-62, Sum P(2) = 6.6e-62
 Identities = 96/259 (37%), Positives = 131/259 (50%)

Query:     7 VGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITC 66
             +GF  F L S     L+ T+  D +A+N ++ +L SP  L  W A GGDPCGE W+G+ C
Sbjct:    15 LGFLSFALISLPSLSLALTNPDDVAAINSLFLALESPL-LPGWVASGGDPCGESWQGVLC 73

Query:    67 SGSSVTEIKXXXXXXXXXXXXXXXXXKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQ 126
             + S V  I                   S+  +D SNN++  SIP  LP +L++L LS N 
Sbjct:    74 NASQVETIILISANLGGELGVGLNMFTSLKAMDFSNNHIGGSIPSTLPVSLQNLFLSGNN 133

Query:   127 FSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASL 186
             F+GT+P S+S +  L               D+FQ    +  +DLS N L+G LP S  +L
Sbjct:   134 FTGTIPESLSSLKSLSVMSLNNNLLSGKIPDVFQDLGLMINIDLSSNNLSGPLPPSMQNL 193

Query:   187 SSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDIAK--TGGNXXXXXX 244
             S+L  L LQNN  +G ++VL  LPL +LNVENN F+G +PE+L  I     GGN      
Sbjct:   194 STLTSLLLQNNHLSGELDVLQDLPLKDLNVENNLFNGPIPEKLLSIPNFIKGGNLFNVTI 253

Query:   245 XXXXXXGTKPVTKRKASPF 263
                    T P       PF
Sbjct:   254 APSPSPETPPSPTSPKRPF 272

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2170219 SRF2 "STRUBBELIG-receptor family 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 6.7e-61, Sum P(2) = 6.7e-61
 Identities = 84/214 (39%), Positives = 127/214 (59%)

Query:    21 VLSKTDSQ--DASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKXXX 78
             VL+KTD+   +  AL  +Y SL +P QL  W+  GGDPCGE W GI+CSGSS+ +++   
Sbjct:    21 VLAKTDTDPLEVLALQDLYKSLRNPEQLRGWRLEGGDPCGEAWLGISCSGSSIVDLQLRE 80

Query:    79 XXXXXXXXXXXXXXKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQM 138
                            ++  LDVS NNL+  IP+ LPPN  H++++ N  + ++P+S+  M
Sbjct:    81 LKLLGSLGNQLQHLHNLKILDVSFNNLEGEIPFGLPPNATHINMAYNNLTQSIPFSLPLM 140

Query:   139 SELKYXXXXXXXXXXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQ 198
             + L+              ++F    +++ +DLS N LTG+LP SF +L +L  LYLQNN+
Sbjct:   141 TSLQSLNLSHNSLSGPLGNVFS-GLQIKEMDLSFNNLTGDLPSSFGTLMNLTSLYLQNNR 199

Query:   199 FTGSINVLGKLPLDELNVENNKFSGWVPEELKDI 232
              TGS+  L  LPL +LN+E+N+FSG +P   + I
Sbjct:   200 LTGSVIYLADLPLADLNIEDNQFSGIIPSHFQSI 233

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2202084 SUB "STRUBBELIG" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 8.9e-60, Sum P(2) = 8.9e-60
 Identities = 85/208 (40%), Positives = 125/208 (60%)

Query:    25 TDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKXXXXXXXXX 84
             T+ +D SA+N +Y +L +PS L +W A GGDPCGE W+G+ C  S++TEI+         
Sbjct:    26 TNLRDVSAINNLYITLGAPS-LHHWLAFGGDPCGEKWQGVVCDSSNITEIRIPGMKVGGG 84

Query:    85 XXXXXXXXKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYX 144
                      S+  +D S+N++  +IP  LP ++++L LS N+F+G +P+++S +S+L   
Sbjct:    85 LSDTLADFSSIQVMDFSSNHISGTIPQALPSSIRNLSLSSNRFTGNIPFTLSFLSDLSEL 144

Query:   145 XXXXXXXXXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSIN 204
                         D FQ+  KL  LDLS N L G LP S   L+SLK LYLQ+N+ TG+++
Sbjct:   145 SLGSNLLSGEIPDYFQQLSKLTKLDLSSNILEGHLPSSMGDLASLKILYLQDNKLTGTLD 204

Query:   205 VLGKLPLDELNVENNKFSGWVPEELKDI 232
             V+  L L +LNVENN FSG +P  L  I
Sbjct:   205 VIEDLFLTDLNVENNLFSGPIPPNLLKI 232

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0007165 "signal transduction" evidence=IC

GO:0004702 "receptor signaling protein serine/threonine kinase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0010059 "positive regulation of atrichoblast fate specification" evidence=IMP

GO:0010063 "positive regulation of trichoblast fate specification" evidence=IMP

GO:0048437 "floral organ development" evidence=IEP;IMP

GO:0048481 "ovule development" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IEP;IMP

GO:0010071 "root meristem specification" evidence=IMP

GO:0048367 "shoot system development" evidence=TAS

GO:0009506 "plasmodesma" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2125566 SRF3 "STRUBBELIG-receptor family 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 2.1e-58, Sum P(2) = 2.1e-58
 Identities = 87/230 (37%), Positives = 126/230 (54%)

Query:     5 LLVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGI 64
             LL+   I ++ S S   L+ T+  D +A+N ++ +L +P  L  W A GGDPCGE W+GI
Sbjct:    15 LLLSLLI-WIPSIS---LAATNPDDVAAINGLFAALGAPV-LPGWIASGGDPCGEAWQGI 69

Query:    65 TCSGSSVTEIKXXXXXXXXXXXXXXXXXKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSE 124
              C+ S +  I                   S+  +D SNN +  SIP  LP  L+H  LS 
Sbjct:    70 ICNVSDIISITVNAANLQGELGDNLAKFTSIRGIDFSNNRIGGSIPSTLPVTLQHFFLSA 129

Query:   125 NQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETLDLSKNQLTGELPRSFA 184
             NQF+G++P S+  +S L               D+FQ    L  LD+S N ++G LP S  
Sbjct:   130 NQFTGSIPESLGTLSFLNDMSLNDNLLSGELPDVFQNLVGLINLDISSNNISGTLPPSME 189

Query:   185 SLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDIAK 234
             +L +L  L +QNNQ +G+++VL  LPL +LN+ENN FSG +P++L  I K
Sbjct:   190 NLLTLTTLRVQNNQLSGTLDVLQGLPLQDLNIENNLFSGPIPDKLLSIPK 239

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
 Identities = 69/239 (28%), Positives = 106/239 (44%)

Query:     6 LVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQLSNWK-AGGGDPCGEHWKGI 64
             L   F+F   SFS   +    S+  S ++    SL +PS LS+W  +     C   W G+
Sbjct:     4 LTALFLFLFFSFSSSAIVDLSSETTSLISFK-RSLENPSLLSSWNVSSSASHCD--WVGV 60

Query:    65 TCSGSSVTEIKXXXXXXXXXXXXXXXXXKSVSYLDVSNNNLKDSIPYQLPPNLKHL---D 121
             TC    V  +                  K++  L ++ N     IP ++  NLKHL   D
Sbjct:    61 TCLLGRVNSLSLPSLSLRGQIPKEISSLKNLRELCLAGNQFSGKIPPEIW-NLKHLQTLD 119

Query:   122 LSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXX-DMFQKNEKLETLDLSKNQLTGELP 180
             LS N  +G +P  +S++ +L Y                F     L +LD+S N L+GE+P
Sbjct:   120 LSGNSLTGLLPRLLSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIP 179

Query:   181 RSFASLSSLKKLYLQNNQFTGSI-NVLGKLPL-DELNVENNKFSGWVPEE---LKDIAK 234
                  LS+L  LY+  N F+G I + +G + L       +  F+G +P+E   LK +AK
Sbjct:   180 PEIGKLSNLSNLYMGLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAK 238

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6R2K1	SRF5_ARATH	No assigned EC number	0.5131	0.9797	0.6938	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	495
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-28
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-15
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	5e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-13
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	2e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-13
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-13
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	3e-11
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	3e-11
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	5e-11
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	8e-11
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	1e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-10
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-09
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	8e-09
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	3e-08
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	6e-08
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	7e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-07
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	4e-07
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	6e-07
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	4e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	1e-05
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	2e-05
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	2e-05
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	3e-05
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	3e-05
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	4e-05
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	4e-05
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	5e-05
cd05078	258	cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat	6e-05
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	7e-05
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	8e-05
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	9e-05
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	1e-04
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	1e-04
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	1e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	2e-04
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	2e-04
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	3e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	3e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-04
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	4e-04
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	4e-04
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	4e-04
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	5e-04
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	6e-04
cd05037	259	cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) dom	6e-04
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	7e-04
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	0.001
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	0.001
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	0.001
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	0.001
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	0.002
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	0.002
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	0.003
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	0.004
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  119 bits (301), Expect = 1e-28
 Identities = 87/259 (33%), Positives = 127/259 (49%), Gaps = 38/259 (14%)

Query: 5   LLVGFFIFYLGSFSCHVLSKTDSQDASALNVMYTSLHSPSQ-LSNWKAGGGDPCGEHWKG 63
           L+   F  +L +FS        +++   L    +S++ P + LSNW +   D C   W+G
Sbjct: 12  LIFMLFFLFL-NFSM-----LHAEELELLLSFKSSINDPLKYLSNWNSSA-DVC--LWQG 62

Query: 64  ITCSGSS-VTEIKLSGLGLNGQLG--------YQLTNLK-----------------SVSY 97
           ITC+ SS V  I LSG  ++G++          Q  NL                  S+ Y
Sbjct: 63  ITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY 122

Query: 98  LDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSD 157
           L++SNNN   SIP    PNL+ LDLS N  SG +P  I   S LK L+LG N L G++ +
Sbjct: 123 LNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182

Query: 158 MFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKL-PLDELN 215
                  LE L L+ NQL G++PR    + SLK +YL  N  +G I   +G L  L+ L+
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242

Query: 216 VENNKFSGWVPEELKDIAK 234
           +  N  +G +P  L ++  
Sbjct: 243 LVYNNLTGPIPSSLGNLKN 261

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  116 bits (292), Expect = 1e-27
 Identities = 88/321 (27%), Positives = 137/321 (42%), Gaps = 49/321 (15%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLK---DSIPYQLPP---------- 115
            S+  ++L     +G+L  + T L  V +LD+SNNNL+   +S  + +P           
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463

Query: 116 ------------NLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNE 163
                        L++LDLS NQFSG VP  +  +SEL  L L  N+L+G++ D     +
Sbjct: 464 FFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK 523

Query: 164 KLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI--NVLGKLPLDELNVENNKF 221
           KL +LDLS NQL+G++P SF+ +  L +L L  NQ +G I  N+     L ++N+ +N  
Sbjct: 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Query: 222 SGWVPEE-----LKDIAKTGGNSWSSSPAPPPPPGTKPVTKRKASPFREGDESSSSKIWQ 276
            G +P       +   A  G             P  K V K              +  W 
Sbjct: 584 HGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRK--------------TPSW- 628

Query: 277 WVIIA--IAVLLALAIIAIVIALFSRRRSSPSSHFLDEERASQRRAFTPLASQELTNDMA 334
           W  I   +   L LA++A        R +       +E+   + + F    S+ +T +  
Sbjct: 629 WFYITCTLGAFLVLALVAFGFVFIRGRNNLELKRVENEDGTWELQFFDSKVSKSITINDI 688

Query: 335 PESIKPFKGIDDYKGGQDYMG 355
             S+K    I   K G  Y G
Sbjct: 689 LSSLKEENVISRGKKGASYKG 709

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 97.6 bits (243), Expect = 2e-21
 Identities = 63/165 (38%), Positives = 97/165 (58%), Gaps = 4/165 (2%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQ 126
           +S+  + L+   L GQ+  +L  +KS+ ++ +  NNL   IPY++    +L HLDL  N 
Sbjct: 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247

Query: 127 FSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASL 186
            +G +P S+  +  L+YL L  N+L+G +       +KL +LDLS N L+GE+P     L
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307

Query: 187 SSLKKLYLQNNQFTGSINV-LGKLP-LDELNVENNKFSGWVPEEL 229
            +L+ L+L +N FTG I V L  LP L  L + +NKFSG +P+ L
Sbjct: 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 85.3 bits (211), Expect = 2e-17
 Identities = 53/170 (31%), Positives = 94/170 (55%), Gaps = 5/170 (2%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPP--NLKHLDLSENQ 126
           +++T + LS   L G++   L +  ++  L + +N+L+  IP  L    +L+ + L +N 
Sbjct: 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415

Query: 127 FSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASL 186
           FSG +P   +++  + +L++ +N L G+++        L+ L L++N+  G LP SF S 
Sbjct: 416 FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS- 474

Query: 187 SSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVPEELKDIAK 234
             L+ L L  NQF+G++   LG L  L +L +  NK SG +P+EL    K
Sbjct: 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKK 524

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 79.5 bits (196), Expect = 1e-15
 Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 6/153 (3%)

Query: 81  LNGQLGYQLTNLKSVSYLDVSNNNLKDSIP---YQLPPNLKHLDLSENQFSGTVPYSISQ 137
           L+G +   + +L+ +  LD+S+N+L   IP    QL  NL+ L L  N F+G +P +++ 
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ-NLEILHLFSNNFTGKIPVALTS 330

Query: 138 MSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNN 197
           +  L+ L L SN+ +G++     K+  L  LDLS N LTGE+P    S  +L KL L +N
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390

Query: 198 QFTGSI-NVLGKL-PLDELNVENNKFSGWVPEE 228
              G I   LG    L  + +++N FSG +P E
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423

Length = 968

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 70.7 bits (174), Expect = 5e-14
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 413 LGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
           LGEG  G VY A+    GK +A+K I          E     ++ + ++ H NI +L G 
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS-LLEELLREIEILKKLNHPNIVKLYGV 59

Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
             ++ H  L+ +Y   GSL + L 
Sbjct: 60  FEDENHLYLVMEYCEGGSLKDLLK 83

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.3 bits (180), Expect = 1e-13
 Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 39/171 (22%)

Query: 23  SKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPC--GEH-WKGITCS-GSSVTEIKLSG 78
           SKT  ++ SAL  + +SL  P +   W    GDPC   +H W G  C   S+  +  + G
Sbjct: 367 SKTLLEEVSALQTLKSSLGLPLRFG-WN---GDPCVPQQHPWSGADCQFDSTKGKWFIDG 422

Query: 79  LGLN-----GQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTV 131
           LGL+     G +   ++ L+ +  +++S N+++ +IP  L    +L+ LDLS N F+G++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 132 PYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRS 182
           P S+ Q++ L+ LNL     NG                   N L+G +P +
Sbjct: 483 PESLGQLTSLRILNL-----NG-------------------NSLSGRVPAA 509

Length = 623

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 69.8 bits (172), Expect = 2e-13
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 12/94 (12%)

Query: 410 GRLLGEGTIGRVYRAKY------PDGKVLAVK--KIDSSHFQRANSESFSEIVQNISRIR 461
           G+ LGEG  G VY+          + KV AVK  K  +S       E F E    + ++ 
Sbjct: 4   GKKLGEGAFGEVYKGTLKGDGEGTETKV-AVKTLKEGASE---EEREEFLEEASIMKKLS 59

Query: 462 HTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           H NI  L+G C++     ++ +Y   G L +FL 
Sbjct: 60  HPNIVRLLGVCTQGEPLYIVTEYMPGGDLLDFLR 93

Length = 258

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.0 bits (174), Expect = 6e-13
 Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 4/151 (2%)

Query: 81  LNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPP--NLKHLDLSENQFSGTVPYSISQM 138
             G++   LT+L  +  L + +N     IP  L    NL  LDLS N  +G +P  +   
Sbjct: 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS 379

Query: 139 SELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQ 198
             L  L L SN L G++         L  + L  N  +GELP  F  L  +  L + NN 
Sbjct: 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439

Query: 199 FTGSINVLG-KLP-LDELNVENNKFSGWVPE 227
             G IN     +P L  L++  NKF G +P+
Sbjct: 440 LQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 69.6 bits (170), Expect = 8e-13
 Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 5/130 (3%)

Query: 93  KSVSYLDVSNNNLKD-SIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQL 151
            ++  LD+S+N ++    P +  PNLK+LDLS N  S  +P  +S +S L  L+L  N++
Sbjct: 140 SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI 198

Query: 152 NGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP- 210
           +  L    +    LE LDLS N +  EL  S ++L +L  L L NN+       +G L  
Sbjct: 199 S-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN 256

Query: 211 LDELNVENNK 220
           L+ L++ NN+
Sbjct: 257 LETLDLSNNQ 266

Length = 394

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 63.3 bits (155), Expect = 3e-11
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 407 FATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
           +     LGEG+ G+VY A+    GK++A+K I     ++       EI + + +++H NI
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREI-KILKKLKHPNI 59

Query: 466 AELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             L     ++    L+ +Y   G L + L 
Sbjct: 60  VRLYDVFEDEDKLYLVMEYCEGGDLFDLLK 89

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 63.3 bits (155), Expect = 3e-11
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 410 GRLLGEGTIGRVYRAKY----PDGKVL-AVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
           G+ LGEG  G VY+ K        KV  AVK +     ++   E   E  + + ++ H N
Sbjct: 4   GKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREA-RIMRKLDHPN 62

Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           + +L+G C+E+    ++ +Y   G L  +L 
Sbjct: 63  VVKLLGVCTEEEPLYIVMEYMEGGDLLSYLR 93

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 63.0 bits (154), Expect = 5e-11
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 6/91 (6%)

Query: 410 GRLLGEGTIGRVYRAKY----PDGKVL-AVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
           G+ LGEG  G VY+          +V  AVK +     ++   E   E  + + ++ H N
Sbjct: 4   GKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREA-RIMRKLDHPN 62

Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           I +L+G C+E+   +++ +Y   G L ++L 
Sbjct: 63  IVKLLGVCTEEEPLMIVMEYMPGGDLLDYLR 93

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 62.2 bits (152), Expect = 8e-11
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 411 RLLGEGTIGRVYRAKY--PDGKVL--AVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
           + LGEG  G VY+ K    DGK    AVK +     +    +   E       + H N+ 
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKK-LGHPNVV 59

Query: 467 ELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            L+G C+E+    L+ +Y   G L ++L
Sbjct: 60  RLLGVCTEEEPLYLVLEYMEGGDLLDYL 87

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 11/95 (11%)

Query: 407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKI-----DSSHFQRANSESFSEIVQNISRI 460
           +   R LG G+ G VY+AK+   GK++AVK +      S   Q A  E     ++ + R+
Sbjct: 1   YELLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARRE-----IRILRRL 55

Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
            H NI  L+    ++ H  L+ +Y   G L ++L 
Sbjct: 56  SHPNIVRLIDAFEDKDHLYLVMEYCEGGDLFDYLS 90

Length = 260

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 54.5 bits (132), Expect = 8e-10
 Identities = 23/59 (38%), Positives = 31/59 (52%)

Query: 141 LKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
           LK L+L +N+L       F+    L+ LDLS N LT   P +F+ L SL+ L L  N  
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 28/174 (16%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLP-----PNLKHLDLSEN-------QFSGTVPYSIS 136
           LT    +  LD+S+N L       L       +L+ L L+ N       +        + 
Sbjct: 77  LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP 136

Query: 137 QMSELKYLNLGSNQLNGQ----LSDMFQKNEKLETLDLSKNQLTGE----LPRSFASLSS 188
               L+ L LG N+L G     L+   + N  L+ L+L+ N +       L     +  +
Sbjct: 137 --PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCN 194

Query: 189 LKKLYLQNNQFT--GSINVLGKLP----LDELNVENNKFSGWVPEELKDIAKTG 236
           L+ L L NN  T  G+  +   L     L+ LN+ +N  +      L     + 
Sbjct: 195 LEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSP 248

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 56.0 bits (136), Expect = 8e-09
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 410 GRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAEL 468
           G LLG G+ G VY A   D G+++AVK ++ S       E+    ++ +S ++H NI   
Sbjct: 5   GELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRY 64

Query: 469 VGFC-SEQGHNILIY-DYYRNGSLHEFLH 495
            G    E+ + + I+ +Y   GSL   L 
Sbjct: 65  YGSERDEEKNTLNIFLEYVSGGSLSSLLK 93

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 413 LGEGTIGRVYRA----KYPDGKV--LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
           LGEG  G+VY+              +A+K +  +   +   E   E  + +S ++H NI 
Sbjct: 13  LGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEA-ELMSDLQHPNIV 71

Query: 467 ELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            L+G C+++    ++++Y  +G LHEFL
Sbjct: 72  CLLGVCTKEQPTCMLFEYLAHGDLHEFL 99

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 53.6 bits (129), Expect = 6e-08
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 407 FATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
           F   R LG G  G V+   + +   +A+K + S        + F + VQ + R+RH ++ 
Sbjct: 8   FTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSD--DLLKQQDFQKEVQALKRLRHKHLI 65

Query: 467 ELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            L   CS      +I +    GSL  FL
Sbjct: 66  SLFAVCSVGEPVYIITELMEKGSLLAFL 93

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 53.6 bits (129), Expect = 7e-08
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 409 TGRLLGEGTIGRVYRAKY-----PDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRH 462
            G+ LGEG  G+V +A+      P+    +AVK +     ++  S+  SE+       +H
Sbjct: 16  LGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH 75

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            NI  L+G C+++G   ++ +Y  +G+L +FL
Sbjct: 76  KNIINLLGVCTQEGPLYVVVEYAAHGNLRDFL 107

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 22/60 (36%), Positives = 29/60 (48%)

Query: 116 NLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQL 175
           NLK LDLS N+ +     +   +  LK L+L  N L     + F     L +LDLS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 411 RLLGEGTIGRVYRAK----YPDGK--VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
           R LGEG  G+V+  +     P+    ++AVK +  +    A  + F    + ++  +H N
Sbjct: 11  RELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDAR-KDFEREAELLTNFQHEN 69

Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           I +  G C+E    I++++Y  +G L++FL
Sbjct: 70  IVKFYGVCTEGDPPIMVFEYMEHGDLNKFL 99

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 45.8 bits (109), Expect = 6e-07
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 26 DSQDASALNVMYTSLHSPSQ--LSNWKAGGGDPCGEHWKGITCS 67
           + D  AL    +SL+      LS+W     DPC   W G+TC 
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCS--WTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 48.6 bits (114), Expect = 4e-06
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANS-ESFSEIVQNISRIRHT- 463
           ++   R LGEG+ G VY A+  D K++A+K +      ++   E F   +Q ++ + H  
Sbjct: 1   SYRILRKLGEGSFGEVYLAR--DRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPP 58

Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           NI +L  F  ++G   L+ +Y   GSL + L 
Sbjct: 59  NIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLK 90

Length = 384

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 5e-06
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 164 KLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG-SINVLGKLP-LDELNVENNKF 221
            L++LDLS N+LT     +F  L +LK L L  N  T  S      LP L  L++  N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 94  SVSYLDVSNNNLK---DSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQ 150
           ++  LD+SNN L    D     LP NLK LDLS N  +   P + S +  L+ L+L  N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLP-NLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 151 L 151
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRA----NSESFSEIVQNISRI 460
            +  G+ LGEGT   VY+A+    G+++A+KKI     + A    N  +  EI + +  +
Sbjct: 1   RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREI-KLLQEL 59

Query: 461 RHTNIAELVG-FCSEQGHNI-LIYDY 484
           +H NI  L+  F  +   NI L++++
Sbjct: 60  KHPNIIGLLDVFGHKS--NINLVFEF 83

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 12/99 (12%)

Query: 406 NFATGRLLGEGTIGRVYRAK-------YPDGKV-LAVK--KIDSSHFQRANSESFSEIVQ 455
               G+ LGEG  G+V RA+        PD  V +AVK  K +++    A+  S  E+++
Sbjct: 13  RLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMK 72

Query: 456 NISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            I +  H NI  L+G C+++G   +I +Y   G+L EFL
Sbjct: 73  LIGK--HKNIINLLGVCTQEGPLYVIVEYAAKGNLREFL 109

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 406 NFATGRLLGEGTIGRVYRA-KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
           N+  G L+G G  G VY+      G  +A+K+I     +    +S  + +  +  ++H N
Sbjct: 1   NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPN 60

Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           I + +G         +I +Y  NGSL + + 
Sbjct: 61  IVKYIGSIETSDSLYIILEYAENGSLRQIIK 91

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 10/98 (10%)

Query: 407 FATGRLLGEGTIGRVYRA--KYPDGKVL--AVKKIDSSHFQRANSESFSEIVQNISRIRH 462
              G++LGEG  G V        DG  L  AVK +       +  E F      +    H
Sbjct: 1   LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDH 60

Query: 463 TNIAELVGFCSEQGHN------ILIYDYYRNGSLHEFL 494
            N+ +L+G C E          ++I  + ++G LH FL
Sbjct: 61  PNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFL 98

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 411 RLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRAN-SESFSEIVQNISRIRHTNIAEL 468
           + +G+G+ G+VY  +   DGK+  +K+ID S+       ++ +E V+ + ++ H NI + 
Sbjct: 6   KQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNE-VKILKKLNHPNIIKY 64

Query: 469 VGFCSEQGHNILIYDYYRNGSLHEFLH 495
                E+G   ++ +Y   G L + + 
Sbjct: 65  YESFEEKGKLCIVMEYADGGDLSQKIK 91

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 406 NFATGRLLGEGTIGRVYRAK------YPDGKVLAVKKI-DSSHFQRANSESFSEIVQNIS 458
           N    R LGEG  G+V+ A+        D  ++AVK + D+S   R +    +E++ N+ 
Sbjct: 6   NIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNL- 64

Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
             +H +I +  G C E    I++++Y ++G L++FL
Sbjct: 65  --QHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFL 98

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 6/90 (6%)

Query: 410 GRLLGEGTIGRVYRA-KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNI---SRIRHTNI 465
           G LLG G+ G VY      DG   AVK++  +   +   E+  ++ Q I   S+++H NI
Sbjct: 5   GELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNI 64

Query: 466 AELVGFCSEQGHNILIY-DYYRNGSLHEFL 494
            + +G   E+  N+ I+ +    GSL + L
Sbjct: 65  VQYLGTEREED-NLYIFLELVPGGSLAKLL 93

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEI------VQNIS 458
           N+  G+LLG+G  GRVY     D G+ LAVK++    F   + E+  E+      +Q + 
Sbjct: 3   NWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVP---FDPDSPETKKEVNALECEIQLLK 59

Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            ++H  I +  G   +     +  +Y   GS+ + L
Sbjct: 60  NLQHERIVQYYGCLRDDETLSIFMEYMPGGSVKDQL 95

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 413 LGEGTIGRVYRAKYPD----GKV----LAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
           LG+GT  ++++    +    G++    + +K +D SH  R  SESF E    +S++ H +
Sbjct: 3   LGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSH--RNYSESFFEAASMMSQLSHKH 60

Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           +    G C     +I++ +Y + GSL  +L
Sbjct: 61  LVLNYGVCVCGDESIMVQEYVKFGSLDTYL 90

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 258

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)

Query: 410 GRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEI---VQNISRIRHTNI 465
           G  +G GT G+VY A   D G+++AVK+I     Q  + ++  EI   ++ +  ++H N 
Sbjct: 5   GNKIGGGTFGKVYTAVNLDTGELMAVKEI---RIQDNDPKTIKEIADEMKVLELLKHPN- 60

Query: 466 AELVGFCSEQGH--NILIY-DYYRNGSLHEFLH 495
             LV +   + H   + I+ +Y   G+L E L 
Sbjct: 61  --LVKYYGVEVHREKVYIFMEYCSGGTLEELLE 91

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 44.2 bits (104), Expect = 8e-05
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 7/95 (7%)

Query: 406 NFATGRLLGEGTIGRVYRAK------YPDGKVLAVKKIDSSHFQRANSESFSEIVQNISR 459
           N   G+ LGEG  G+V +A             +AVK +  +       +  SE    + +
Sbjct: 1   NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEF-NLLKQ 59

Query: 460 IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           + H ++ +L G CS+ G  +LI +Y + GSL  FL
Sbjct: 60  VNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRSFL 94

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 44.8 bits (105), Expect = 9e-05
 Identities = 49/149 (32%), Positives = 72/149 (48%), Gaps = 24/149 (16%)

Query: 104 NLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNE 163
           N   S+P  LPP L+ L +S+NQ + ++P   S++ +L          N QL+ +     
Sbjct: 292 NQLTSLPV-LPPGLQELSVSDNQLA-SLPALPSELCKLW-------AYNNQLTSLPTLPS 342

Query: 164 KLETLDLSKNQLTGELPRSFASL-SSLKKLYLQNNQFTGSINVLGKLP--LDELNVENNK 220
            L+ L +S NQL      S  +L S L KL+  NN+ T     L  LP  L EL V  N+
Sbjct: 343 GLQELSVSDNQLA-----SLPTLPSELYKLWAYNNRLTS----LPALPSGLKELIVSGNR 393

Query: 221 FSGW--VPEELKDIAKTGGNSWSSSPAPP 247
            +    +P ELK++    GN  +S P  P
Sbjct: 394 LTSLPVLPSELKELM-VSGNRLTSLPMLP 421

Length = 788

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 411 RLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
           R +G+G  GRV++A+ P         ++AVK +         ++   E    ++   H N
Sbjct: 11  RDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAAL-MAEFDHPN 69

Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           I +L+G C+      L+++Y   G L+EFL
Sbjct: 70  IVKLLGVCAVGKPMCLLFEYMAYGDLNEFL 99

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 411 RLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVG 470
             +G+G  G VY+        +AVK   S+         F +  + + +  H NI +L+G
Sbjct: 1   EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPD-LKRKFLQEAEILKQYDHPNIVKLIG 59

Query: 471 FCSEQGHNILIYDYYRNGSLHEFL 494
            C ++    ++ +    GSL  FL
Sbjct: 60  VCVQKQPIYIVMELVPGGSLLTFL 83

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 21/110 (19%)

Query: 406 NFATGRL-----LGEGTIGRVYRAKY--PDGKVLAVKKIDSSHFQ---------RANS-- 447
            F    L     LGEG  G V+  +              + +            R ++  
Sbjct: 1   EFPRQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASD 60

Query: 448 ---ESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
              E F + V+ +SR+   NIA L+G C+      +I +Y  NG L++FL
Sbjct: 61  NAREDFLKEVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFL 110

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 164 KLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
            LETLDLS NQ+T +LP   ++L +L+ L L  N+ T  ++ L  
Sbjct: 2   NLETLDLSNNQIT-DLP-PLSNLPNLETLDLSGNKIT-DLSPLSN 43

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 411 RLLGEGTIGRVYRAKY-PD----GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
           R+LGEG  G+V    Y P     G+++AVK +     Q+ N+  + + +  +  + H NI
Sbjct: 10  RVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQ-NTSGWKKEINILKTLYHENI 68

Query: 466 AELVGFCSEQGHNI--LIYDYYRNGSLHEFL 494
            +  G CSEQG     LI +Y   GSL ++L
Sbjct: 69  VKYKGCCSEQGGKGLQLIMEYVPLGSLRDYL 99

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 12/93 (12%)

Query: 411 RLLGEGTIGRVYRAKY-PDG----KVLAVK--KIDSSHFQRANSESFSEIVQNISRIRHT 463
           R LGEG  G+V   +Y P+G    + +AVK  K +S     A+ +   EI++N+    H 
Sbjct: 10  RDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLY---HE 66

Query: 464 NIAELVGFCSEQGHN--ILIYDYYRNGSLHEFL 494
           NI +  G C+E G N   LI ++  +GSL E+L
Sbjct: 67  NIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYL 99

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 34/195 (17%)

Query: 66  CSGSSVTEIKLSGLGLNGQLGY---QLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDL 122
           C  ++ TE++L  LGL         Q+T L     LD  NN LK S+P  L  N+K L  
Sbjct: 175 CLKNNKTELRLKILGLTTIPACIPEQITTL----ILD--NNELK-SLPENLQGNIKTLYA 227

Query: 123 SENQFS---GTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGEL 179
           + NQ +    T+P +I +M       L  N++  +L +       L++LDL  N+++  L
Sbjct: 228 NSNQLTSIPATLPDTIQEM------ELSINRIT-ELPERLP--SALQSLDLFHNKISC-L 277

Query: 180 PRSFASLSSLKKLYLQNNQFTGSINVLGKLP--LDELNVENNKFSGWVPEELK---DIAK 234
           P +      L+ L + +N       +   LP  +  LNV++N  +  +PE L       +
Sbjct: 278 PENLP--EELRYLSVYDNSIRT---LPAHLPSGITHLNVQSNSLT-ALPETLPPGLKTLE 331

Query: 235 TGGNSWSSSPAPPPP 249
            G N+ +S PA  PP
Sbjct: 332 AGENALTSLPASLPP 346

Length = 754

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 22/90 (24%)

Query: 144 LNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI 203
           L L +  L G + +   K   L++++LS N + G +P S  S++SL+ L L  N F GS 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS- 481

Query: 204 NVLGKLPLDELNVENNKFSGWVPEELKDIA 233
                                +PE L  + 
Sbjct: 482 ---------------------IPESLGQLT 490

Length = 623

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 12/93 (12%)

Query: 411 RLLGEGTIGRVYRAKYP-----DGKVLAVK--KIDSSHFQRANSESFSEIVQNISRIRHT 463
           + LGEG  G+V   +Y       G+ +AVK          R++ E   EI++ +    H 
Sbjct: 10  KQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLD---HE 66

Query: 464 NIAELVGFCSEQGHNI--LIYDYYRNGSLHEFL 494
           NI +  G C + G     LI +Y  +GSL ++L
Sbjct: 67  NIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYL 99

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
            + LG G  G V+  K+     +A+K I        + + F E  + + ++ H N+ +L 
Sbjct: 9   LKELGSGQFGVVHLGKWRGKIDVAIKMI---REGAMSEDDFIEEAKVMMKLSHPNLVQLY 65

Query: 470 GFCSEQGHNILIYDYYRNGSLHEFL 494
           G C++Q    ++ +Y  NG L  +L
Sbjct: 66  GVCTKQRPIFIVTEYMANGCLLNYL 90

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 10/91 (10%)

Query: 411 RLLGEGTIGRVYRAK------YPDGKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRHT 463
           R LGEG  G+V+ A+        D  ++AVK + D +   R + +  +E++ N+   +H 
Sbjct: 11  RELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNL---QHE 67

Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           +I +  G C +    I++++Y ++G L++FL
Sbjct: 68  HIVKFYGVCGDGDPLIMVFEYMKHGDLNKFL 98

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 10/89 (11%)

Query: 413 LGEGTIGRVYRAK----YPDGK--VLAVKKI-DSSHFQRANSESFSEIVQNISRIRHTNI 465
           LGEG  G+V+ A+     P+    ++AVK + ++S   R + +  +E+   ++ ++H +I
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAEL---LTVLQHQHI 69

Query: 466 AELVGFCSEQGHNILIYDYYRNGSLHEFL 494
               G C+E    +++++Y R+G L+ FL
Sbjct: 70  VRFYGVCTEGRPLLMVFEYMRHGDLNRFL 98

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
           +G G  G V+   + + + +A+K I        + E F E  Q + ++ H  + +L G C
Sbjct: 12  IGSGQFGLVWLGYWLEKRKVAIKTIREGAM---SEEDFIEEAQVMMKLSHPKLVQLYGVC 68

Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
           +E+    L++++  +G L ++L
Sbjct: 69  TERSPICLVFEFMEHGCLSDYL 90

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 15/94 (15%)

Query: 413 LGEGTIGRVYRAKY---PDGKVLA--------VKKIDSSHFQRANSESFSEIVQNISRIR 461
           LG+GT   +Y+       D  ++         +K + S H    +S +F E    +S++ 
Sbjct: 3   LGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDH---RDSLAFFETASLMSQLS 59

Query: 462 HTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           H ++ +L G C     NI++ +Y + G L  FLH
Sbjct: 60  HKHLVKLYGVCVRDE-NIMVEEYVKFGPLDVFLH 92

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 259

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 42.1 bits (98), Expect = 7e-04
 Identities = 56/169 (33%), Positives = 82/169 (48%), Gaps = 27/169 (15%)

Query: 95  VSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFS-------GTVPYSI--SQMSELKYLN 145
           ++ L + +NNL  S+P  LPP L+ L++S NQ +       G +  SI  + ++ L  L 
Sbjct: 224 ITTLVIPDNNLT-SLP-ALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP 281

Query: 146 LGSNQL---NGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGS 202
            G  +L     QL+ +      L+ L +S NQL   LP   A  S L KL+  NNQ T  
Sbjct: 282 SGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQL-ASLP---ALPSELCKLWAYNNQLTS- 336

Query: 203 INVLGKLP--LDELNVENNKFSGW--VPEELKDIAKTGGNSWSSSPAPP 247
              L  LP  L EL+V +N+ +    +P EL  +     N  +S PA P
Sbjct: 337 ---LPTLPSGLQELSVSDNQLASLPTLPSELYKLWAY-NNRLTSLPALP 381

Length = 788

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 10/91 (10%)

Query: 410 GRLLGEGTIGRVYRAKY--PDGKVL--AVK--KIDSSHFQRANSESFSEIVQNISRIRHT 463
           GR +GEG  G VY+  Y  P+ + +  AVK  K  +S    +  E F +    + +  H 
Sbjct: 11  GRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTS---PSVREKFLQEAYIMRQFDHP 67

Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           +I +L+G  +E    I + +    G L  +L
Sbjct: 68  HIVKLIGVITENPVWI-VMELAPLGELRSYL 97

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 8/93 (8%)

Query: 410 GRLLGEGTIGRVYRA------KYPDGKV--LAVKKIDSSHFQRANSESFSEIVQNISRIR 461
           G+ LGEG  G+V  A      K    +V  +AVK + S   ++  S+  SE+       +
Sbjct: 23  GKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGK 82

Query: 462 HTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           H NI  L+G C++ G   +I +Y   G+L E+L
Sbjct: 83  HKNIINLLGACTQDGPLYVIVEYASKGNLREYL 115

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 412 LLGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVG 470
           +LG+GT G VY A+    +V +A+K+I     +    +   E +   S ++H NI + +G
Sbjct: 15  VLGKGTYGIVYAARDLSTQVRIAIKEIPERDSR--YVQPLHEEIALHSYLKHRNIVQYLG 72

Query: 471 FCSEQGHNILIYDYYRNGSLHEFL 494
             SE G   +  +    GSL   L
Sbjct: 73  SDSENGFFKIFMEQVPGGSLSALL 96

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 410 GRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR 461
           G+ LGEG  G+V  A        K  +   +AVK +     ++  S+  SE+       +
Sbjct: 20  GKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK 79

Query: 462 HTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           H NI  L+G C++ G   +I +Y   G+L E+L
Sbjct: 80  HKNIINLLGACTQDGPLYVIVEYASKGNLREYL 112

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
            R LG G  G V+   +     +AVK +        + E+F +  Q + ++RH  + +L 
Sbjct: 11  ERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTM---SPEAFLQEAQIMKKLRHDKLVQLY 67

Query: 470 GFCSEQGHNILIYDYYRNGSLHEFLH 495
             CSE+    ++ +Y   GSL +FL 
Sbjct: 68  AVCSEEEPIYIVTEYMSKGSLLDFLK 93

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 8/87 (9%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVKKI--DSSHFQRANSESFSEIVQNISRIRHTNIAE 467
           G  +G+G  G V    Y   KV AVK +  DS+  Q     +F      ++ +RH N+ +
Sbjct: 11  GATIGKGEFGDVMLGDYRGQKV-AVKCLKDDSTAAQ-----AFLAEASVMTTLRHPNLVQ 64

Query: 468 LVGFCSEQGHNILIYDYYRNGSLHEFL 494
           L+G   +     ++ +Y   GSL ++L
Sbjct: 65  LLGVVLQGNPLYIVTEYMAKGSLVDYL 91

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 11/98 (11%)

Query: 406 NFATGRLLGEGTIGRVYRAK-YPDGKVLAVKKIDSSHFQRANSESFSEIVQNI------- 457
            +  G+ LG G     Y+A+    G ++AVK++    + R  S    E+V+ +       
Sbjct: 1   EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVT---YVRNTSSEQEEVVEALRKEIRLM 57

Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           +R+ H +I  ++G   E  H  L  ++   GS+   L 
Sbjct: 58  ARLNHPHIIRMLGATCEDSHFNLFVEWMAGGSVSHLLS 95

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 16/97 (16%)

Query: 413 LGEGTIGRVY--------------RAKYPDGKVL-AVKKIDSSHFQRANSESFSEIVQNI 457
           LGEG  G V+                ++    VL AVK + +   + A ++   EI + +
Sbjct: 13  LGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEI-KIM 71

Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           SR+++ NI  L+G C       +I +Y  NG L++FL
Sbjct: 72  SRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFL 108

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 18/92 (19%)

Query: 414 GEGTIGRVYRAK---YPDGKVLAVKKIDSSHFQRANSESFS-----EIVQNISRIRHTNI 465
           G GT GRVY+AK     DGK  A+KK      Q       S     EI      ++H N+
Sbjct: 9   GRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQ---YTGISQSACREIALL-RELKHENV 64

Query: 466 AELVGFCSEQGHNI--LIYDYYRNGSLHEFLH 495
             LV    E       L++DY    + H+   
Sbjct: 65  VSLVEVFLEHADKSVYLLFDY----AEHDLWQ 92

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	495
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.84
PLN03150	623	hypothetical protein; Provisional	99.74
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.66
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.61
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.61
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.55
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.55
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.54
PLN03150	623	hypothetical protein; Provisional	99.53
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.5
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.5
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.49
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.48
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.48
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.44
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.43
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.41
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.4
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.4
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.4
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.38
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.37
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.35
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.33
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.31
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.31
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.31
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.3
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.27
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.25
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.25
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.25
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.24
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.24
KOG0605	550	consensus NDR and related serine/threonine kinases	99.23
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.23
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.22
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.22
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.22
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.21
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.21
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.2
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.2
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.19
PHA02988	283	hypothetical protein; Provisional	99.19
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.19
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.18
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.18
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.18
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.18
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.17
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.17
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.17
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.17
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.16
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.16
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.15
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.15
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.15
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.15
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.14
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.14
KOG0586	596	consensus Serine/threonine protein kinase [General	99.13
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.13
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.13
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.13
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.13
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.13
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.13
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.12
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.12
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.12
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.12
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.12
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.12
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.12
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.12
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.11
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.11
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.11
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.11
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.1
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.1
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.1
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.09
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.09
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.09
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.09
KOG0610	459	consensus Putative serine/threonine protein kinase	99.09
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.09
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.09
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.09
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.08
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.08
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.08
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.08
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.08
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.08
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.08
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.08
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.08
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.08
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.08
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.08
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.08
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.08
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.07
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.07
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.07
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.07
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.07
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.07
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.06
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.06
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.06
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.06
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.06
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.06
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.05
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.05
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.05
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.05
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.05
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.04
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.04
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.04
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.04
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.04
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.04
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.03
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.03
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.03
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.03
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.03
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.03
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.03
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.02
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.02
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.02
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.01
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.01
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.01
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.01
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.01
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.01
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.01
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.01
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.01
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.01
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.01
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.01
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.01
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.0
KOG0198	313	consensus MEKK and related serine/threonine protei	99.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.0
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.0
PTZ00267	478	NIMA-related protein kinase; Provisional	98.99
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	98.99
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	98.99
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	98.99
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	98.99
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	98.99
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	98.99
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	98.99
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	98.99
KOG0589	426	consensus Serine/threonine protein kinase [General	98.99
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	98.99
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	98.99
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	98.99
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	98.98
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	98.98
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	98.98
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	98.98
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	98.98
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	98.98
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	98.98
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	98.98
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	98.98
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	98.98
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	98.98
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.98
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	98.98
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	98.97
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	98.97
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	98.97
KOG3653	534	consensus Transforming growth factor beta/activin	98.97
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	98.97
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	98.97
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	98.96
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	98.96
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	98.96
KOG4717	864	consensus Serine/threonine protein kinase [Signal	98.96
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	98.96
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	98.96
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	98.96
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	98.96
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	98.95
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	98.95
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	98.95
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	98.95
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	98.95
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	98.95
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	98.95
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	98.95
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	98.95
PTZ00283	496	serine/threonine protein kinase; Provisional	98.95
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	98.95
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	98.95
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	98.95
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	98.95
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	98.94
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	98.94
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	98.94
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	98.94
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	98.94
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	98.94
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	98.94
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	98.93
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	98.93
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	98.93
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	98.93
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	98.93
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	98.93
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	98.93
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	98.93
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	98.93
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	98.93
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	98.93
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	98.93
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	98.93
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	98.93
KOG0578	550	consensus p21-activated serine/threonine protein k	98.92
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	98.92
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	98.92
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	98.92
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	98.92
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	98.92
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	98.92
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	98.92
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	98.92
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	98.92
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	98.92
KOG0201	467	consensus Serine/threonine protein kinase [Signal	98.92
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	98.92
PLN00009	294	cyclin-dependent kinase A; Provisional	98.92
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	98.92
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	98.92
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	98.91
KOG0661	538	consensus MAPK related serine/threonine protein ki	98.91
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	98.91
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	98.91
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	98.91
KOG0694	694	consensus Serine/threonine protein kinase [Signal	98.91
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	98.9
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	98.9
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	98.9
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	98.9
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	98.9
KOG4721	904	consensus Serine/threonine protein kinase, contain	98.9
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	98.9
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	98.9
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.9
KOG2052	513	consensus Activin A type IB receptor, serine/threo	98.9
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	98.9
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.9
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	98.9
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	98.89
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	98.89
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	98.89
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	98.89
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	98.89
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	98.89
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	98.89
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	98.89
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	98.89
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	98.88
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	98.88
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	98.88
PRK09188	365	serine/threonine protein kinase; Provisional	98.88
PLN03224	507	probable serine/threonine protein kinase; Provisio	98.88
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	98.87
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	98.87
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	98.87
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	98.87
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	98.87
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	98.87
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	98.86
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	98.86
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	98.86
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	98.86
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	98.86
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	98.86
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	98.86
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	98.86
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	98.86
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	98.85
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	98.85
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	98.85
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	98.85
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	98.85
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	98.85
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	98.84
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	98.84
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	98.83
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	98.83
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	98.83
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	98.83
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	98.83
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	98.82
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	98.81
KOG0577	948	consensus Serine/threonine protein kinase [Signal	98.81
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	98.81
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	98.8
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.8
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	98.8
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	98.8
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	98.8
PHA03212	391	serine/threonine kinase US3; Provisional	98.8
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	98.79
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	98.79
KOG0607	463	consensus MAP kinase-interacting kinase and relate	98.79
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	98.78
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	98.77
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	98.77
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	98.76
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	98.76
PTZ00036	440	glycogen synthase kinase; Provisional	98.76
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	98.76
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	98.76
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	98.75
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	98.75
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	98.74
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	98.74
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	98.73
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	98.73
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	98.72
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	98.72
KOG1989	738	consensus ARK protein kinase family [Signal transd	98.71
PTZ00024	335	cyclin-dependent protein kinase; Provisional	98.71
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	98.71
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	98.7
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	98.7
PHA03211	461	serine/threonine kinase US3; Provisional	98.7
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	98.7
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	98.7
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	98.7
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	98.69
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	98.69
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	98.69
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	98.68
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	98.68
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	98.68
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	98.68
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	98.68
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	98.67
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	98.67
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.66
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	98.66
PRK10345	210	hypothetical protein; Provisional	98.66
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	98.65
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	98.65
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	98.65
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	98.64
PHA03209	357	serine/threonine kinase US3; Provisional	98.64
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.63
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	98.63
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	98.63
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	98.61
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	98.61
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	98.61
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	98.6
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	98.6
PHA03207	392	serine/threonine kinase US3; Provisional	98.59
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	98.57
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	98.56
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	98.55
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	98.54
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	98.53
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	98.51
KOG0690	516	consensus Serine/threonine protein kinase [Signal	98.5
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	98.49
PTZ00284	467	protein kinase; Provisional	98.48
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	98.46
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	98.45
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	98.44
KOG0584	632	consensus Serine/threonine protein kinase [General	98.43
PHA03210	501	serine/threonine kinase US3; Provisional	98.41
PRK14879	211	serine/threonine protein kinase; Provisional	98.41
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	98.38
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.38
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	98.38
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.37
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	98.37
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	98.36
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	98.36
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	98.35
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.35
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	98.33
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.31
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.3
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.29
KOG0596	677	consensus Dual specificity; serine/threonine and t	98.27
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	98.27
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.27
KOG1152	772	consensus Signal transduction serine/threonine kin	98.26
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	98.25
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	98.23
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	98.21
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	98.19
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.18
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	98.17
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.16
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.16
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.16
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.15
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.14
KOG0696	683	consensus Serine/threonine protein kinase [Signal	98.09
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	98.08
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.06
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	98.02
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	97.99
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	97.99
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	97.96
smart00090	237	RIO RIO-like kinase.	97.91
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.91
KOG0695	593	consensus Serine/threonine protein kinase [Signal	97.9
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	97.81
KOG1167	418	consensus Serine/threonine protein kinase of the C	97.8
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.78
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.76
PRK15386	426	type III secretion protein GogB; Provisional	97.75
KOG1027	903	consensus Serine/threonine protein kinase and endo	97.67
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	97.67
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.64
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	97.62
PRK12274	218	serine/threonine protein kinase; Provisional	97.59
PRK15386	426	type III secretion protein GogB; Provisional	97.57
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	97.54
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	97.52
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.5
PHA02882	294	putative serine/threonine kinase; Provisional	97.48
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	97.47
COG0515	384	SPS1 Serine/threonine protein kinase [General func	97.43
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.42
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.3
KOG1290	590	consensus Serine/threonine protein kinase [Signal	97.26
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.18
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	97.17
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	97.15
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	97.05
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	96.96
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	96.91
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	96.9
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	96.83
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.8
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.78
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.72
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	96.6
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	96.57
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.56
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	96.41
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.28
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.17
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	96.1
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.07
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.95
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.89
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	95.38
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.36
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	95.31
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	95.27
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.1
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.48
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	94.46
KOG1235	538	consensus Predicted unusual protein kinase [Genera	93.58
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.43
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	93.4
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.73
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	92.58

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.9e-36  Score=338.08  Aligned_cols=349  Identities=27%  Similarity=0.467  Sum_probs=201.9

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNL  146 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  146 (495)
                      .+++.|+|++|.++|.+|..+.+++.|+.|||++|.++|.+|..+.  ++|+.|+|++|++.|.+|..+ .+++|+.|+|
T Consensus       404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~l  482 (968)
T PLN00113        404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDL  482 (968)
T ss_pred             CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEEC
Confidence            4677788888888888887788888888888888877777765443  666777777666666666544 3466666666


Q ss_pred             ccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCccc
Q 040888          147 GSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGW  224 (495)
Q Consensus       147 ~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~  224 (495)
                      ++|++++.+|..+.++++|+.|+|++|+++|.+|..+.++++|++|+|++|.++|.+ ..+..++ |+.|++++|+++|.
T Consensus       483 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  562 (968)
T PLN00113        483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE  562 (968)
T ss_pred             cCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccccc
Confidence            666666666666666666666666666666666666666666666666666666655 4455555 66666666666666


Q ss_pred             Cchhhhhcc-----cCCCCcCCCCCCCCCCCCCC-CCCC-CCCC------C---CCCCCCCCCcceeeEEE-eehHHHHH
Q 040888          225 VPEELKDIA-----KTGGNSWSSSPAPPPPPGTK-PVTK-RKAS------P---FREGDESSSSKIWQWVI-IAIAVLLA  287 (495)
Q Consensus       225 ~p~~l~~l~-----~~~~n~~~~~~~~~~~~~~~-~~~~-~~~~------~---~~~~~~~~~~~~~~~~i-i~i~vll~  287 (495)
                      +|..+..+.     .+.+|.+.+..+ ....... .... .++.      +   ............+..++ ++++++++
T Consensus       563 ~p~~l~~l~~L~~l~ls~N~l~~~~p-~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~  641 (968)
T PLN00113        563 IPKNLGNVESLVQVNISHNHLHGSLP-STGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAFLV  641 (968)
T ss_pred             CChhHhcCcccCEEeccCCcceeeCC-CcchhcccChhhhcCCccccCCccccCCCCCccccccceeeeehhHHHHHHHH
Confidence            666665544     233444432111 1100000 0000 0000      0   00000000111111111 11222222


Q ss_pred             HHHHHHHHHHhhccCCCCC-CCcchhhhhhhccccCCcchhhhhcCCCCCCCCCCCccCCCCCCCCccCcccCCCCcCCC
Q 040888          288 LAIIAIVIALFSRRRSSPS-SHFLDEERASQRRAFTPLASQELTNDMAPESIKPFKGIDDYKGGQDYMGFHDYKSNQDHY  366 (495)
Q Consensus       288 l~~v~i~~~~~~~rr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (495)
                      +++++ ++++++++|+... ...+..                             .                        
T Consensus       642 ~~~~~-~~~~~~~~~~~~~~~~~~~~-----------------------------~------------------------  667 (968)
T PLN00113        642 LALVA-FGFVFIRGRNNLELKRVENE-----------------------------D------------------------  667 (968)
T ss_pred             HHHHH-HHHHHHHhhhcccccccccc-----------------------------c------------------------
Confidence            22222 2222222222110 000000                             0                        


Q ss_pred             CCCceeeeeeeccccccccccCCCCCCcccHHHHHHhccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccc
Q 040888          367 KGNLFVFWHLLEVNQFNNVKSTNAQAAPFSMADLLTATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRA  445 (495)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~  445 (495)
                        ..   |...   .+     .......++++++..   .|...+.||+|+||.||+|+. .++..||||++.....   
T Consensus       668 --~~---~~~~---~~-----~~~~~~~~~~~~~~~---~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---  728 (968)
T PLN00113        668 --GT---WELQ---FF-----DSKVSKSITINDILS---SLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNS---  728 (968)
T ss_pred             --cc---cccc---cc-----ccccchhhhHHHHHh---hCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCcc---
Confidence              00   0000   00     000112244555543   467788999999999999997 5789999999864321   


Q ss_pred             cHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCCCHhhhhC
Q 040888          446 NSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       446 ~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~GsL~~~L~  495 (495)
                         ...+|++.+++++|||||+++|+|...+..++|||||++|+|.++++
T Consensus       729 ---~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~  775 (968)
T PLN00113        729 ---IPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLR  775 (968)
T ss_pred             ---ccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHh
Confidence               12346888999999999999999999999999999999999999874

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=2.7e-26  Score=260.28  Aligned_cols=206  Identities=35%  Similarity=0.642  Sum_probs=151.5

Q ss_pred             CChHHHHHHHHHHHcCCCCC-CCCCCCCCCCCCCCCCcccEEecC-CCEeEEEcCCCCCccccccccCCCCCCcEEECcC
Q 040888           25 TDSQDASALNVMYTSLHSPS-QLSNWKAGGGDPCGEHWKGITCSG-SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSN  102 (495)
Q Consensus        25 ~~~~~~~~L~~~~~~~~~~~-~l~~w~~~~~~~C~~~w~gv~c~~-~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~  102 (495)
                      ..+.|..+|++|++++.++. .+.+|+. ..++|  .|.||.|+. ++|+.|+|++|+++|.++..|..+++|+.|||++
T Consensus        26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~-~~~~c--~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~  102 (968)
T PLN00113         26 LHAEELELLLSFKSSINDPLKYLSNWNS-SADVC--LWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSN  102 (968)
T ss_pred             CCHHHHHHHHHHHHhCCCCcccCCCCCC-CCCCC--cCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCC
Confidence            45689999999999997663 6789974 56788  899999974 6899999999999888888888888888888888


Q ss_pred             CCCCCCCCCCCC---CCC----------------------cEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccch
Q 040888          103 NNLKDSIPYQLP---PNL----------------------KHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSD  157 (495)
Q Consensus       103 N~l~g~~p~~~~---~~L----------------------~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~  157 (495)
                      |++.|.+|..+.   ++|                      ++|+|++|.+++.+|..++++++|++|+|++|.+.+.+|.
T Consensus       103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~  182 (968)
T PLN00113        103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN  182 (968)
T ss_pred             CccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence            888777775432   444                      4555555555555666666677777777777777777777


Q ss_pred             hhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcccCchhhhhcc
Q 040888          158 MFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVPEELKDIA  233 (495)
Q Consensus       158 ~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~~p~~l~~l~  233 (495)
                      .+.++++|++|+|++|++++.+|..++++++|+.|+|++|++++.+ ..++.++ |+.|++++|.+++.+|..+.+++
T Consensus       183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  260 (968)
T PLN00113        183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK  260 (968)
T ss_pred             hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC
Confidence            7777777777777777777777777777777777777777777655 4455555 77777777777777777776655

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.84  E-value=7.5e-21  Score=189.79  Aligned_cols=103  Identities=43%  Similarity=0.774  Sum_probs=94.0

Q ss_pred             CCCcccHHHHHHhccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEE
Q 040888          391 QAAPFSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVG  470 (495)
Q Consensus       391 ~~~~~~~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g  470 (495)
                      ....|++.++..||++|+..+.||+|+||.||+|.+++|+.||||++.......  .++|.+|++++++++|||||+|+|
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~--~~eF~~Ei~~ls~l~H~Nlv~LlG  138 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQG--EREFLNEVEILSRLRHPNLVKLLG  138 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcc--hhHHHHHHHHHhcCCCcCcccEEE
Confidence            456799999999999999999999999999999999999999999887654321  467999999999999999999999


Q ss_pred             EEEeCC-EEEEEEEecCCCCHhhhhC
Q 040888          471 FCSEQG-HNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       471 ~~~~~~-~~~lv~ey~~~GsL~~~L~  495 (495)
                      ||.+.+ +.+||||||+||+|.++||
T Consensus       139 yC~e~~~~~~LVYEym~nGsL~d~L~  164 (361)
T KOG1187|consen  139 YCLEGGEHRLLVYEYMPNGSLEDHLH  164 (361)
T ss_pred             EEecCCceEEEEEEccCCCCHHHHhC
Confidence            999988 5999999999999999986

>PLN03150 hypothetical protein; Provisional

Probab=99.74  E-value=1.3e-17  Score=178.61  Aligned_cols=151  Identities=27%  Similarity=0.524  Sum_probs=97.7

Q ss_pred             cCCChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCC---CCcccEEecCC------CEeEEEcCCCCCccccccccCCCC
Q 040888           23 SKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCG---EHWKGITCSGS------SVTEIKLSGLGLNGQLGYQLTNLK   93 (495)
Q Consensus        23 ~~~~~~~~~~L~~~~~~~~~~~~l~~w~~~~~~~C~---~~w~gv~c~~~------~v~~l~L~~n~l~g~~~~~~~~l~   93 (495)
                      ..+.+.|+.||+.+|.++..+.. .+|.   +++|.   +.|.||.|+..      .|+.|+|++|++.|.+|..+++++
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~~-~~W~---g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~  442 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPLR-FGWN---GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR  442 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCccc-CCCC---CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCC
Confidence            45678899999999999876532 4795   46773   36999999521      377788888888877777777777


Q ss_pred             CCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCC
Q 040888           94 SVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKN  173 (495)
Q Consensus        94 ~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N  173 (495)
                      +|+.|+|++|.|.|.+|                      ..++.+++|+.|+|++|+|+|.+|+.++++++|+.|+|++|
T Consensus       443 ~L~~L~Ls~N~l~g~iP----------------------~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        443 HLQSINLSGNSIRGNIP----------------------PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN  500 (623)
T ss_pred             CCCEEECCCCcccCcCC----------------------hHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence            77766666666665554                      44555555555555555555555555555555555555555


Q ss_pred             cCCCcCcccccCC-CCCCEEeccCCcc
Q 040888          174 QLTGELPRSFASL-SSLKKLYLQNNQF  199 (495)
Q Consensus       174 ~l~g~~p~~~~~l-~~L~~L~l~~N~l  199 (495)
                      +|+|.+|..+..+ .++..+++.+|..
T Consensus       501 ~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        501 SLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             cccccCChHHhhccccCceEEecCCcc
Confidence            5555555555432 3445566666653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=1.1e-18  Score=148.77  Aligned_cols=161  Identities=28%  Similarity=0.473  Sum_probs=145.1

Q ss_pred             CCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEE
Q 040888           68 GSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLN  145 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  145 (495)
                      .+.++.|.|+.|.++ .+|+.+..|.+|+.|++++|++. .+|.++.  +.|++|+++-|++. ..|..|+.++.|++||
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            357899999999998 56778999999999999999998 6777776  89999999999998 8999999999999999


Q ss_pred             cccCcCCC-ccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcc
Q 040888          146 LGSNQLNG-QLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSG  223 (495)
Q Consensus       146 L~~N~l~g-~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g  223 (495)
                      |..|+++. .+|..|..++.|..|.|+.|.|. .+|..++++++|+.|.+..|.+-..+..++.+. |++|.+.+|+++ 
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~-  186 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT-  186 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee-
Confidence            99999964 67888999999999999999998 889999999999999999999987777888887 999999999998 


Q ss_pred             cCchhhhhcc
Q 040888          224 WVPEELKDIA  233 (495)
Q Consensus       224 ~~p~~l~~l~  233 (495)
                      .+|++++++.
T Consensus       187 vlppel~~l~  196 (264)
T KOG0617|consen  187 VLPPELANLD  196 (264)
T ss_pred             ecChhhhhhh
Confidence            6788887765

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.66  E-value=2.2e-16  Score=151.86  Aligned_cols=92  Identities=20%  Similarity=0.460  Sum_probs=81.6

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ..+|.....||+|+||+||+|+++ ++..||||.+..........+-...|+++|++++|||||+++++++.++..+|||
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVM   88 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVM   88 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEE
Confidence            456777788999999999999984 5899999999877544444566889999999999999999999999999999999


Q ss_pred             EecCCCCHhhhhC
Q 040888          483 DYYRNGSLHEFLH  495 (495)
Q Consensus       483 ey~~~GsL~~~L~  495 (495)
                      |||.+|||.+|||
T Consensus        89 EyC~gGDLs~yi~  101 (429)
T KOG0595|consen   89 EYCNGGDLSDYIR  101 (429)
T ss_pred             EeCCCCCHHHHHH
Confidence            9999999999985

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.61  E-value=1.6e-15  Score=151.23  Aligned_cols=90  Identities=28%  Similarity=0.494  Sum_probs=81.2

Q ss_pred             ccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      .......+.||+|.||.|..|+...+..||||.++.+... ..+++|.+|+++|++++|||||+|+|.|..++..++|+|
T Consensus       537 Rs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~-~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~E  615 (807)
T KOG1094|consen  537 RSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATK-NARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITE  615 (807)
T ss_pred             hhheehhhhhcCcccceeEEEEecCceEEEEeecCcccch-hHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHH
Confidence            3445567889999999999999988899999999987543 346899999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      ||++|+|.+||
T Consensus       616 YmEnGDLnqFl  626 (807)
T KOG1094|consen  616 YMENGDLNQFL  626 (807)
T ss_pred             HHhcCcHHHHH
Confidence            99999999987

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.61  E-value=6.8e-17  Score=161.02  Aligned_cols=170  Identities=26%  Similarity=0.320  Sum_probs=147.9

Q ss_pred             cEEecCCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCC
Q 040888           63 GITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSE  140 (495)
Q Consensus        63 gv~c~~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~  140 (495)
                      |+.-....+..|+|+.|+++..-...+.+|+.|+.||||+|.+...-+..+.  ++|+.|||++|+|+..-+..|..|..
T Consensus       263 G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~  342 (873)
T KOG4194|consen  263 GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ  342 (873)
T ss_pred             cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHH
Confidence            4433345789999999999988888899999999999999999876665544  89999999999999888889999999


Q ss_pred             CcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcc---cccCCCCCCEEeccCCcccccc-cccCCcc-CcEEE
Q 040888          141 LKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPR---SFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELN  215 (495)
Q Consensus       141 L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~---~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~  215 (495)
                      |+.|+|++|.++..-...|..+++|+.|||++|.|++.|-+   .|..|++|+.|+|.+|++.... ..+..++ |++||
T Consensus       343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld  422 (873)
T KOG4194|consen  343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD  422 (873)
T ss_pred             hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence            99999999999988888899999999999999999987764   4778999999999999998777 6777777 99999


Q ss_pred             eecCCCcccCchhhhhc
Q 040888          216 VENNKFSGWVPEELKDI  232 (495)
Q Consensus       216 l~~N~l~g~~p~~l~~l  232 (495)
                      |.+|.+-..-|..|..+
T Consensus       423 L~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  423 LGDNAIASIQPNAFEPM  439 (873)
T ss_pred             CCCCcceeecccccccc
Confidence            99999988777766543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.55  E-value=6.3e-16  Score=155.17  Aligned_cols=160  Identities=29%  Similarity=0.447  Sum_probs=122.0

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC---CCCcEEECcCCcCCCCcchhccCCCCCcEEE
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP---PNLKHLDLSENQFSGTVPYSISQMSELKYLN  145 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~---~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  145 (495)
                      ..++.|||+.|.|. ..|..+..-.++-+|+||+|++. .||-.+.   ..|-+||||+|++. .+|+.+..|..|+.|.
T Consensus       103 ~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~  179 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLK  179 (1255)
T ss_pred             ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhh
Confidence            46788888888886 56777777778888888888886 6776665   55667888888887 6778888888888888


Q ss_pred             cccCcCC-------------------------CccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCccc
Q 040888          146 LGSNQLN-------------------------GQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT  200 (495)
Q Consensus       146 L~~N~l~-------------------------g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~  200 (495)
                      |++|.+.                         ..+|..+..+.+|..+|||.|+|. .+|..+-++.+|+.|+|++|+++
T Consensus       180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             cCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence            8888663                         236777888888899999999998 88998989999999999999887


Q ss_pred             ccccccCCcc-CcEEEeecCCCcccCchhhhhcc
Q 040888          201 GSINVLGKLP-LDELNVENNKFSGWVPEELKDIA  233 (495)
Q Consensus       201 g~~~~~~~~~-L~~l~l~~N~l~g~~p~~l~~l~  233 (495)
                      ..-...+... |+.|++|.|+|+ ..|+.+..++
T Consensus       259 eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~  291 (1255)
T KOG0444|consen  259 ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT  291 (1255)
T ss_pred             eeeccHHHHhhhhhhccccchhc-cchHHHhhhH
Confidence            5433233333 778888888877 4666665554

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=2e-15  Score=157.75  Aligned_cols=90  Identities=29%  Similarity=0.577  Sum_probs=78.0

Q ss_pred             cCCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  478 (495)
                      .+....+.||+|.||+||+|+..      +.+.||||.++.... .+..++|.+|++++++++|||||+|+|.|.+++..
T Consensus       486 ~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~-~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~  564 (774)
T KOG1026|consen  486 SDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAE-NQARQDFRREAELLAELQHPNIVRLLGVCREGDPL  564 (774)
T ss_pred             hheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhccccc-HHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCee
Confidence            34445678999999999999863      356899999987543 23468999999999999999999999999999999


Q ss_pred             EEEEEecCCCCHhhhhC
Q 040888          479 ILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L~  495 (495)
                      ++|+|||..|||++||+
T Consensus       565 ~MvFEYm~~GDL~eFLr  581 (774)
T KOG1026|consen  565 CMVFEYMDHGDLHEFLR  581 (774)
T ss_pred             EEEEEecccccHHHHHH
Confidence            99999999999999984

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.54  E-value=1.2e-14  Score=149.60  Aligned_cols=88  Identities=23%  Similarity=0.437  Sum_probs=78.1

Q ss_pred             CcccceeccCCceEEEEEEcC----CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          407 FATGRLLGEGTIGRVYRAKYP----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ..+.++||.|.||.||+|.++    ....||||.|+.+... ..+++|+.|..+|++++||||++|.|+....+..++|.
T Consensus       631 i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gyte-kqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiT  709 (996)
T KOG0196|consen  631 VKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTE-KQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIIT  709 (996)
T ss_pred             eEEEEEEecccccceecccccCCCCcceeEEEeeeccCccH-HHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEh
Confidence            345789999999999999984    2458999999877543 34779999999999999999999999999999999999


Q ss_pred             EecCCCCHhhhhC
Q 040888          483 DYYRNGSLHEFLH  495 (495)
Q Consensus       483 ey~~~GsL~~~L~  495 (495)
                      |||+||+|+.||+
T Consensus       710 EyMENGsLDsFLR  722 (996)
T KOG0196|consen  710 EYMENGSLDSFLR  722 (996)
T ss_pred             hhhhCCcHHHHHh
Confidence            9999999999985

>PLN03150 hypothetical protein; Provisional

Probab=99.53  E-value=5.5e-14  Score=150.71  Aligned_cols=87  Identities=32%  Similarity=0.587  Sum_probs=47.4

Q ss_pred             CcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccC
Q 040888          117 LKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQN  196 (495)
Q Consensus       117 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~  196 (495)
                      ++.|+|++|.++|.+|..++.+++|+.|+|++|+|+|.+|..++.+++|+.|+|++|+|+|.+|..++++++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             Ccccccc
Q 040888          197 NQFTGSI  203 (495)
Q Consensus       197 N~l~g~~  203 (495)
                      |+++|.+
T Consensus       500 N~l~g~i  506 (623)
T PLN03150        500 NSLSGRV  506 (623)
T ss_pred             CcccccC
Confidence            5555444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.50  E-value=9.4e-16  Score=130.87  Aligned_cols=143  Identities=36%  Similarity=0.576  Sum_probs=129.3

Q ss_pred             ccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCC
Q 040888           88 QLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKL  165 (495)
Q Consensus        88 ~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L  165 (495)
                      .+.+++.++.|.||+|+++ .+|+.+.  .+|+.|++++|++. .+|.+++.+++|+.|+++-|++. .+|..|+.++.|
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            4667888999999999998 6777776  89999999999999 89999999999999999999998 789999999999


Q ss_pred             cEEEccCCcCCC-cCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcccCchhhhhccc
Q 040888          166 ETLDLSKNQLTG-ELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVPEELKDIAK  234 (495)
Q Consensus       166 ~~L~ls~N~l~g-~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~~p~~l~~l~~  234 (495)
                      +.|||++|+++. .+|..|..+..|+.|+|+.|.|.-.++.++.++ |+.|.+.+|.+- ..|.+++.+..
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~  174 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR  174 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence            999999999975 589999999999999999999987778888888 999999999987 68888888773

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.50  E-value=2e-14  Score=143.30  Aligned_cols=86  Identities=29%  Similarity=0.553  Sum_probs=77.8

Q ss_pred             CcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecC
Q 040888          407 FATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYR  486 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~  486 (495)
                      +...+.||+|.||.||.|.++....||||.+.....   ..++|.+|+++|.+++|+|||+++|+|..++..+||+|||+
T Consensus       208 l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m---~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~  284 (468)
T KOG0197|consen  208 LKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSM---SPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMP  284 (468)
T ss_pred             HHHHHHhcCCccceEEEEEEcCCCcccceEEecccc---ChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecc
Confidence            344688999999999999998888999999987643   25789999999999999999999999999999999999999


Q ss_pred             CCCHhhhhC
Q 040888          487 NGSLHEFLH  495 (495)
Q Consensus       487 ~GsL~~~L~  495 (495)
                      +|+|.+||+
T Consensus       285 ~GsLl~yLr  293 (468)
T KOG0197|consen  285 KGSLLDYLR  293 (468)
T ss_pred             cCcHHHHhh
Confidence            999999985

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.49  E-value=5.8e-14  Score=139.61  Aligned_cols=86  Identities=33%  Similarity=0.621  Sum_probs=74.8

Q ss_pred             cceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC-EEEEEEEecCCC
Q 040888          410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG-HNILIYDYYRNG  488 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~-~~~lv~ey~~~G  488 (495)
                      .+.+|+|+||+||+|.++....||||++..........++|.+|+.+|.+++|||||+++|+|.+.. ..++|+|||++|
T Consensus        46 ~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~G  125 (362)
T KOG0192|consen   46 EEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMPGG  125 (362)
T ss_pred             hhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCCCC
Confidence            4569999999999999966555999999865443323568999999999999999999999999887 789999999999


Q ss_pred             CHhhhhC
Q 040888          489 SLHEFLH  495 (495)
Q Consensus       489 sL~~~L~  495 (495)
                      +|.++||
T Consensus       126 sL~~~l~  132 (362)
T KOG0192|consen  126 SLSVLLH  132 (362)
T ss_pred             cHHHHHh
Confidence            9999885

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.48  E-value=2.7e-14  Score=142.69  Aligned_cols=167  Identities=26%  Similarity=0.348  Sum_probs=120.9

Q ss_pred             CCCCCCcccEEecC----------------CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CC
Q 040888           55 DPCGEHWKGITCSG----------------SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PN  116 (495)
Q Consensus        55 ~~C~~~w~gv~c~~----------------~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~  116 (495)
                      .+|.|.-.-..|+.                ..++.|+|++|.|+..-+..|-++++|+.++|.+|.++ .||....  .+
T Consensus        48 a~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sgh  126 (873)
T KOG4194|consen   48 ATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGH  126 (873)
T ss_pred             CcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccc
Confidence            44555555666754                23667999999999999999999999999999999998 6775443  46


Q ss_pred             CcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccC
Q 040888          117 LKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQN  196 (495)
Q Consensus       117 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~  196 (495)
                      |+.|+|.+|.|+..-..++.-++.|+.||||.|.|+..--..|..-.++++|+|++|.++..--..|.++.+|..|.|++
T Consensus       127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr  206 (873)
T KOG4194|consen  127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR  206 (873)
T ss_pred             eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc
Confidence            77888887777766666777777777777777777754445565556677777777777766666677777777777777


Q ss_pred             Ccccccc-cccCCcc-CcEEEeecCCCc
Q 040888          197 NQFTGSI-NVLGKLP-LDELNVENNKFS  222 (495)
Q Consensus       197 N~l~g~~-~~~~~~~-L~~l~l~~N~l~  222 (495)
                      |+++..+ ..+..++ |+.|+|..|++.
T Consensus       207 NrittLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  207 NRITTLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             CcccccCHHHhhhcchhhhhhcccccee
Confidence            7777655 5555566 777777766653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.48  E-value=4.8e-13  Score=144.48  Aligned_cols=171  Identities=25%  Similarity=0.400  Sum_probs=99.1

Q ss_pred             hhhccccCCChHHHHHHHHHHHcCCCCCCCCC----CCCCCCCCCCC--------------CcccEEecCCCEe------
Q 040888           17 FSCHVLSKTDSQDASALNVMYTSLHSPSQLSN----WKAGGGDPCGE--------------HWKGITCSGSSVT------   72 (495)
Q Consensus        17 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~----w~~~~~~~C~~--------------~w~gv~c~~~~v~------   72 (495)
                      -.|+....+.+.+...+.++.+.+..|+.+.+    |.. ..+.|.-              .-.-|.|.+..|+      
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~-~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~~~vt~l~~~g  130 (754)
T PRK15370         52 YLCHPPETASPEEIKSKFECLRMLAFPAYADNIQYSRGG-ADQYCILSENSQEILSIVFNTEGYTVEGGGKSVTYTRVTE  130 (754)
T ss_pred             HHhCCCCCCCHHHHHHHHHHHHHhcCCchhhccccccCC-CCcccccCCcchhhheeeecCCceEEecCCCccccccccc
Confidence            45677788889999999999999999876655    864 4567731              1112667544444      


Q ss_pred             ---------------------------------------------------EEEcCCCCCccccccccCCCCCCcEEECc
Q 040888           73 ---------------------------------------------------EIKLSGLGLNGQLGYQLTNLKSVSYLDVS  101 (495)
Q Consensus        73 ---------------------------------------------------~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls  101 (495)
                                                                         .|+|++++++. +|..+.  ++|+.|+|+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls  207 (754)
T PRK15370        131 SEQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTT-IPACIP--EQITTLILD  207 (754)
T ss_pred             ccccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCc-CCcccc--cCCcEEEec
Confidence                                                               45555555542 333222  345666666


Q ss_pred             CCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcc
Q 040888          102 NNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPR  181 (495)
Q Consensus       102 ~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~  181 (495)
                      +|+|+ .+|..+.++|+.|+|++|+|+ .+|..+.  .+|+.|+|++|++. .+|..+.  .+|+.|+|++|+|+ .+|.
T Consensus       208 ~N~Lt-sLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~  279 (754)
T PRK15370        208 NNELK-SLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPE  279 (754)
T ss_pred             CCCCC-cCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cccc
Confidence            66665 345545556666666666665 3444332  34566666666655 4444443  35666666666665 3454


Q ss_pred             cccCCCCCCEEeccCCcccc
Q 040888          182 SFASLSSLKKLYLQNNQFTG  201 (495)
Q Consensus       182 ~~~~l~~L~~L~l~~N~l~g  201 (495)
                      .+.  ++|+.|+|++|+|++
T Consensus       280 ~l~--~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        280 NLP--EELRYLSVYDNSIRT  297 (754)
T ss_pred             ccC--CCCcEEECCCCcccc
Confidence            443  356666666666554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.44  E-value=2e-14  Score=137.68  Aligned_cols=190  Identities=22%  Similarity=0.305  Sum_probs=131.2

Q ss_pred             CCCCCCCCc---ccEEecCC-----------CEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CC
Q 040888           53 GGDPCGEHW---KGITCSGS-----------SVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PN  116 (495)
Q Consensus        53 ~~~~C~~~w---~gv~c~~~-----------~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~  116 (495)
                      .+.||.|+-   .-|.|+..           ..++|+|..|+++...+..|+.+.+|++||||+|+|+..-|..|.  ++
T Consensus        37 CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~  116 (498)
T KOG4237|consen   37 CPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLAS  116 (498)
T ss_pred             CCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHh
Confidence            345676655   44788752           578899999999999999999999999999999999977776664  33


Q ss_pred             CcE-EECcCCcCCCCcchhccC------------------------CCCC------------------------cEEEcc
Q 040888          117 LKH-LDLSENQFSGTVPYSISQ------------------------MSEL------------------------KYLNLG  147 (495)
Q Consensus       117 L~~-L~Ls~N~l~g~~p~~~~~------------------------l~~L------------------------~~L~L~  147 (495)
                      |.. +++++|+|+......|++                        |++|                        +.+.+.
T Consensus       117 l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA  196 (498)
T KOG4237|consen  117 LLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLA  196 (498)
T ss_pred             hhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhh
Confidence            333 333446655322222222                        2333                        333333


Q ss_pred             cCcCC-------------------------------------------------------------Cccc-hhhhCCCCC
Q 040888          148 SNQLN-------------------------------------------------------------GQLS-DMFQKNEKL  165 (495)
Q Consensus       148 ~N~l~-------------------------------------------------------------g~~p-~~~~~l~~L  165 (495)
                      .|.+-                                                             +.-| ..|..+++|
T Consensus       197 ~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L  276 (498)
T KOG4237|consen  197 QNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNL  276 (498)
T ss_pred             cCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccc
Confidence            33210                                                             0111 246677888


Q ss_pred             cEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcccCchhhhhcc-----cCCCC
Q 040888          166 ETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVPEELKDIA-----KTGGN  238 (495)
Q Consensus       166 ~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~~p~~l~~l~-----~~~~n  238 (495)
                      +.|+|++|.+++.-+.+|..+..++.|+|..|++.-.- ..+..+. |+.|+|.+|+++...|..|..+.     .+..|
T Consensus       277 ~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  277 RKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN  356 (498)
T ss_pred             eEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence            99999999999888888888899999999999887544 4566666 88999999999988887776554     34456


Q ss_pred             cCCC
Q 040888          239 SWSS  242 (495)
Q Consensus       239 ~~~~  242 (495)
                      +|+|
T Consensus       357 p~~C  360 (498)
T KOG4237|consen  357 PFNC  360 (498)
T ss_pred             cccC
Confidence            6664

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.43  E-value=1.9e-13  Score=138.29  Aligned_cols=97  Identities=24%  Similarity=0.489  Sum_probs=80.0

Q ss_pred             HHHHhccCCcccceeccCCceEEEEEEcC--CC--CE-EEEEEecCcc-cccccHHHHHHHHHHHhcCCCCCcceEEEEE
Q 040888          399 DLLTATANFATGRLLGEGTIGRVYRAKYP--DG--KV-LAVKKIDSSH-FQRANSESFSEIVQNISRIRHTNIAELVGFC  472 (495)
Q Consensus       399 ~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~--~g--~~-vavK~l~~~~-~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~  472 (495)
                      .++-..++....+.||+|+||.||+|.+.  ++  .. ||||...... ......++|.+|.++|+.++|||||+++|++
T Consensus       151 ~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa  230 (474)
T KOG0194|consen  151 KWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVA  230 (474)
T ss_pred             ccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence            33444455556699999999999999984  23  23 8999987532 3334568899999999999999999999999


Q ss_pred             EeCCEEEEEEEecCCCCHhhhhC
Q 040888          473 SEQGHNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       473 ~~~~~~~lv~ey~~~GsL~~~L~  495 (495)
                      ..+.+.++|||+|.||+|.+||+
T Consensus       231 ~~~~Pl~ivmEl~~gGsL~~~L~  253 (474)
T KOG0194|consen  231 VLEEPLMLVMELCNGGSLDDYLK  253 (474)
T ss_pred             cCCCccEEEEEecCCCcHHHHHH
Confidence            99999999999999999999984

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=4.8e-13  Score=129.01  Aligned_cols=90  Identities=20%  Similarity=0.384  Sum_probs=76.1

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccc-----cHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRA-----NSESFSEIVQNISRIRHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~-----~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  478 (495)
                      +.|...+.+|+|+||.|-+|.- ++|+.||||.+.+......     ......+|+++|.++.|||||++++++...+..
T Consensus       172 d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~  251 (475)
T KOG0615|consen  172 DYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDSS  251 (475)
T ss_pred             ceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCce
Confidence            3456678999999999999987 5799999999986543221     122346999999999999999999999999999


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      |+|+|||++|+|++++
T Consensus       252 YmVlE~v~GGeLfd~v  267 (475)
T KOG0615|consen  252 YMVLEYVEGGELFDKV  267 (475)
T ss_pred             EEEEEEecCccHHHHH
Confidence            9999999999999875

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=4e-13  Score=132.59  Aligned_cols=89  Identities=27%  Similarity=0.484  Sum_probs=75.5

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--CEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ--GHNILI  481 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~~~lv  481 (495)
                      +.|.....||+|.||.||||+. .+|+.||+|+++.+....+......+||.+|++++||||++|.+...+.  ..+|||
T Consensus       117 ~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlV  196 (560)
T KOG0600|consen  117 DSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLV  196 (560)
T ss_pred             HHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEE
Confidence            3466678899999999999986 6799999999988765444456678999999999999999999999876  689999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      +|||++ ||..++
T Consensus       197 FeYMdh-DL~GLl  208 (560)
T KOG0600|consen  197 FEYMDH-DLSGLL  208 (560)
T ss_pred             Eecccc-hhhhhh
Confidence            999986 776554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.40  E-value=5.8e-13  Score=143.18  Aligned_cols=109  Identities=33%  Similarity=0.384  Sum_probs=55.5

Q ss_pred             CCCcEEECcCCcCCCCcchhccC-----------------CCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCC
Q 040888          115 PNLKHLDLSENQFSGTVPYSISQ-----------------MSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTG  177 (495)
Q Consensus       115 ~~L~~L~Ls~N~l~g~~p~~~~~-----------------l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g  177 (495)
                      .+|++|+|++|+|++ +|....+                 ..+|+.|+|++|+|++ +|..   .++|+.|++++|+|++
T Consensus       342 ~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss  416 (788)
T PRK15387        342 SGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS  416 (788)
T ss_pred             cccceEecCCCccCC-CCCCCcccceehhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC
Confidence            467777777777763 4432111                 1234444444444442 2321   1345555555555542


Q ss_pred             cCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcccCchhhhhc
Q 040888          178 ELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVPEELKDI  232 (495)
Q Consensus       178 ~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~~p~~l~~l  232 (495)
                       +|...   .+|+.|+|++|+|+..+..+..++ |+.|+|++|+|+|.+|..+..+
T Consensus       417 -IP~l~---~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        417 -LPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             -CCcch---hhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence             34321   244555556666554333444444 6677777777777666666544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.40  E-value=2.4e-14  Score=143.90  Aligned_cols=150  Identities=26%  Similarity=0.413  Sum_probs=100.8

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCC-CCcchhccCCCCCcEEE
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFS-GTVPYSISQMSELKYLN  145 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~  145 (495)
                      ++++-|.|...+|. .+|.+++.|..|++|.+++|++.. +-.++.  +.|+.+++..|++. .-||..+..|..|+.||
T Consensus        32 t~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD  109 (1255)
T KOG0444|consen   32 TQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD  109 (1255)
T ss_pred             hheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence            45666666666654 567777777777777777777652 222233  66777777777774 23666777777777777


Q ss_pred             cccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcc-cccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCc
Q 040888          146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPR-SFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFS  222 (495)
Q Consensus       146 L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~-~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~  222 (495)
                      ||+|++. ..|..+..-.++..|+||+|+|. .||. -|.+|..|-.|||++|++...++.+..+. |+.|+|++|+|.
T Consensus       110 LShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  110 LSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             cchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh
Confidence            7777776 56666777777777777777776 4443 45667777777777777776666655555 777777777665

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=2.1e-13  Score=122.69  Aligned_cols=92  Identities=28%  Similarity=0.438  Sum_probs=81.0

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      .++|+.++.||+|.||.||.|..+ ++-.||+|++.+..... ...+++.+|+++-+.++||||.++++|+.++...||+
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLi  100 (281)
T KOG0580|consen   21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLI  100 (281)
T ss_pred             hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEE
Confidence            467888999999999999999984 57899999998765432 3367899999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhhC
Q 040888          482 YDYYRNGSLHEFLH  495 (495)
Q Consensus       482 ~ey~~~GsL~~~L~  495 (495)
                      +||.++|++...|+
T Consensus       101 lEya~~gel~k~L~  114 (281)
T KOG0580|consen  101 LEYAPRGELYKDLQ  114 (281)
T ss_pred             EEecCCchHHHHHH
Confidence            99999999988763

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.37  E-value=1.4e-12  Score=140.93  Aligned_cols=147  Identities=28%  Similarity=0.451  Sum_probs=85.1

Q ss_pred             CEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcccC
Q 040888           70 SVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSN  149 (495)
Q Consensus        70 ~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N  149 (495)
                      +++.|+|++|.|+. +|..+.  .+|+.|+|++|++. .+|..++.+|+.|+|++|+|+ .+|..+.  .+|+.|+|++|
T Consensus       221 nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N  293 (754)
T PRK15370        221 NIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLPSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDN  293 (754)
T ss_pred             CCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHhCCCCEEECcCCccC-ccccccC--CCCcEEECCCC
Confidence            57788888888773 454432  35666666666665 556555566666666666666 3454442  35666666666


Q ss_pred             cCCCccchhhh-------------------CCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc
Q 040888          150 QLNGQLSDMFQ-------------------KNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP  210 (495)
Q Consensus       150 ~l~g~~p~~~~-------------------~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~  210 (495)
                      +|++ +|..+.                   -.++|+.|++++|.|++ +|..+.  ++|+.|+|++|+|+..+..+. ..
T Consensus       294 ~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~lp-~~  368 (754)
T PRK15370        294 SIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPETLP-PT  368 (754)
T ss_pred             cccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCChhhc-CC
Confidence            6653 222111                   11356666666666663 455443  567777777777764332221 13


Q ss_pred             CcEEEeecCCCcccCchhh
Q 040888          211 LDELNVENNKFSGWVPEEL  229 (495)
Q Consensus       211 L~~l~l~~N~l~g~~p~~l  229 (495)
                      |+.|++++|.|+. +|..+
T Consensus       369 L~~LdLs~N~Lt~-LP~~l  386 (754)
T PRK15370        369 ITTLDVSRNALTN-LPENL  386 (754)
T ss_pred             cCEEECCCCcCCC-CCHhH
Confidence            7777777777773 44443

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.35  E-value=3.9e-13  Score=135.15  Aligned_cols=95  Identities=22%  Similarity=0.459  Sum_probs=83.0

Q ss_pred             HHHHHhccCCcccceeccCCceEEEEEEcCC-CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC
Q 040888          398 ADLLTATANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG  476 (495)
Q Consensus       398 ~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~  476 (495)
                      ++++....+....++||-|.||.||.|+++. .-.||||.++.+.+.   .++|+.|..+|..++|||+|+|+|+|..+.
T Consensus       260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMe---veEFLkEAAvMKeikHpNLVqLLGVCT~Ep  336 (1157)
T KOG4278|consen  260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGVCTHEP  336 (1157)
T ss_pred             chhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcchh---HHHHHHHHHHHHhhcCccHHHHhhhhccCC
Confidence            4444445566678999999999999999954 678999999877543   579999999999999999999999999999


Q ss_pred             EEEEEEEecCCCCHhhhhC
Q 040888          477 HNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L~  495 (495)
                      ..|+|.|||.+|+|.+||+
T Consensus       337 PFYIiTEfM~yGNLLdYLR  355 (1157)
T KOG4278|consen  337 PFYIITEFMCYGNLLDYLR  355 (1157)
T ss_pred             CeEEEEecccCccHHHHHH
Confidence            9999999999999999985

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.33  E-value=1.8e-12  Score=118.44  Aligned_cols=88  Identities=25%  Similarity=0.450  Sum_probs=76.1

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      .|...+.+|+|.||.||+|.. .+|+.||||+++.....++......+||+.|+.++|+||+.|++++-..+..-+|+||
T Consensus         3 rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfEf   82 (318)
T KOG0659|consen    3 RYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFEF   82 (318)
T ss_pred             hhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEEe
Confidence            355678899999999999997 5799999999988765444456788999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      |+. ||...+
T Consensus        83 m~t-dLe~vI   91 (318)
T KOG0659|consen   83 MPT-DLEVVI   91 (318)
T ss_pred             ccc-cHHHHh
Confidence            986 776654

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=5.9e-12  Score=127.30  Aligned_cols=91  Identities=25%  Similarity=0.503  Sum_probs=80.5

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ..|...+.||+|+|+.||+++. ..|..||+|++.+..... ...+...+||++.++++|||||+++++|++.+..|+|.
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            3577889999999999999998 789999999998754432 23567899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhhC
Q 040888          483 DYYRNGSLHEFLH  495 (495)
Q Consensus       483 ey~~~GsL~~~L~  495 (495)
                      |+|++|+|.++++
T Consensus        98 ELC~~~sL~el~K  110 (592)
T KOG0575|consen   98 ELCHRGSLMELLK  110 (592)
T ss_pred             EecCCccHHHHHH
Confidence            9999999988763

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.31  E-value=2.4e-12  Score=139.57  Aligned_cols=89  Identities=31%  Similarity=0.617  Sum_probs=76.6

Q ss_pred             CCcccceeccCCceEEEEEEcCC--CC----EEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYPD--GK----VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~~--g~----~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      +....+.||+|.||.||+|.+.+  |.    .||||.+..... .+...+|.+|..+|++++|||||+++|.|.+....+
T Consensus       693 ~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~-~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~  771 (1025)
T KOG1095|consen  693 NVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSS-EQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPL  771 (1025)
T ss_pred             heEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCC-HHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcE
Confidence            34456889999999999999843  33    589999986533 234678999999999999999999999999999999


Q ss_pred             EEEEecCCCCHhhhhC
Q 040888          480 LIYDYYRNGSLHEFLH  495 (495)
Q Consensus       480 lv~ey~~~GsL~~~L~  495 (495)
                      +++|||++|||..||+
T Consensus       772 i~leyM~gGDL~sflr  787 (1025)
T KOG1095|consen  772 ILLEYMEGGDLLSFLR  787 (1025)
T ss_pred             EEehhcccCcHHHHHH
Confidence            9999999999999985

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.31  E-value=5.2e-12  Score=120.83  Aligned_cols=85  Identities=25%  Similarity=0.373  Sum_probs=74.6

Q ss_pred             ccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC-EEEEEEEecC
Q 040888          409 TGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG-HNILIYDYYR  486 (495)
Q Consensus       409 ~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~-~~~lv~ey~~  486 (495)
                      ..+.||+|..|+|||+.+ ++++.+|+|++.... +....++..+|++++.+.+||+||.++|.|..+. +..++||||+
T Consensus        83 ~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~-~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEYMD  161 (364)
T KOG0581|consen   83 RLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNI-DPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEYMD  161 (364)
T ss_pred             hhhhcccCCCcEEEEEEEcCCCeEEEEEeecccC-CHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhhcC
Confidence            358899999999999999 568999999995432 2334678999999999999999999999999988 5999999999


Q ss_pred             CCCHhhhh
Q 040888          487 NGSLHEFL  494 (495)
Q Consensus       487 ~GsL~~~L  494 (495)
                      +|||++++
T Consensus       162 gGSLd~~~  169 (364)
T KOG0581|consen  162 GGSLDDIL  169 (364)
T ss_pred             CCCHHHHH
Confidence            99999875

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.30  E-value=1.9e-11  Score=131.69  Aligned_cols=54  Identities=30%  Similarity=0.457  Sum_probs=34.3

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCC
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFS  128 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~  128 (495)
                      .+++.|+|.+|+|+. +|.   .+++|++|+|++|+|+ .+|. ++++|+.|+|++|.|+
T Consensus       222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~-lp~sL~~L~Ls~N~L~  275 (788)
T PRK15387        222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV-LPPGLLELSIFSNPLT  275 (788)
T ss_pred             cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccC-cccccceeeccCCchh
Confidence            357888888888875 443   2477888888888887 3453 2344444444444443

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.27  E-value=1.8e-12  Score=120.42  Aligned_cols=87  Identities=21%  Similarity=0.399  Sum_probs=72.5

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      .|+..-.+|+|+||.||||+.+ +|+.||||+.-.........+--++|+++|.+++|+|||.|+.+|......+||+||
T Consensus         3 kYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~   82 (396)
T KOG0593|consen    3 KYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEY   82 (396)
T ss_pred             HHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEeee
Confidence            4555678999999999999985 599999999976543223345678999999999999999999999999999999999


Q ss_pred             cCCCCHhh
Q 040888          485 YRNGSLHE  492 (495)
Q Consensus       485 ~~~GsL~~  492 (495)
                      ++.-=|++
T Consensus        83 ~dhTvL~e   90 (396)
T KOG0593|consen   83 CDHTVLHE   90 (396)
T ss_pred             cchHHHHH
Confidence            98754443

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.25  E-value=9.5e-12  Score=118.98  Aligned_cols=92  Identities=22%  Similarity=0.415  Sum_probs=80.7

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      .++|+..++||+|+||+||.++.. +++.+|+|++++..... ...+...+|..+|.+++||.||++.-.+.+.+..|+|
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylV  103 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLV  103 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEE
Confidence            457888999999999999999874 59999999998765432 2356788999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhhC
Q 040888          482 YDYYRNGSLHEFLH  495 (495)
Q Consensus       482 ~ey~~~GsL~~~L~  495 (495)
                      +||+.||+|+.+|+
T Consensus       104 ld~~~GGeLf~hL~  117 (357)
T KOG0598|consen  104 LDYLNGGELFYHLQ  117 (357)
T ss_pred             EeccCCccHHHHHH
Confidence            99999999998874

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.25  E-value=1.8e-11  Score=125.13  Aligned_cols=91  Identities=25%  Similarity=0.476  Sum_probs=76.3

Q ss_pred             ccCCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-CCCcceEEEEEEeCC
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-HTNIAELVGFCSEQG  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~  476 (495)
                      .+.|...+.||+|+||.||+|+..      .+..||||++..... ....+.|.+|++++.+++ |||||+++++|...+
T Consensus        36 ~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~-~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~  114 (400)
T cd05105          36 RDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTAR-SSEKQALMSELKIMTHLGPHLNIVNLLGACTKSG  114 (400)
T ss_pred             ccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCC-hHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCC
Confidence            456777899999999999999852      134799999975432 223467999999999996 999999999999999


Q ss_pred             EEEEEEEecCCCCHhhhhC
Q 040888          477 HNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L~  495 (495)
                      ..++||||+++|+|.++|+
T Consensus       115 ~~~lv~Ey~~~g~L~~~l~  133 (400)
T cd05105         115 PIYIITEYCFYGDLVNYLH  133 (400)
T ss_pred             ceEEEEEecCCCcHHHHHH
Confidence            9999999999999998874

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.25  E-value=1.2e-13  Score=132.65  Aligned_cols=158  Identities=27%  Similarity=0.413  Sum_probs=114.7

Q ss_pred             CEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC-CCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           70 SVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP-PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        70 ~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~-~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      .+..++..+|+++ .+|+.++++.+|..|++.+|++....|..+. ..|++||...|-++ .+|+.++.+.+|.-|+|..
T Consensus       138 ~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~  215 (565)
T KOG0472|consen  138 DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRR  215 (565)
T ss_pred             hhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhh
Confidence            4666777788876 5677788888999999999998855554444 78888888888887 7888888888888888888


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCccccc-CCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcccCc
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFA-SLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVP  226 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~-~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~~p  226 (495)
                      |++. .+| +|+++..|..|+++.|++. .+|.+.. ++++|..|||..|+++..+..+..+. |+.||+|+|.+++ .|
T Consensus       216 Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~-Lp  291 (565)
T KOG0472|consen  216 NKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS-LP  291 (565)
T ss_pred             cccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc-CC
Confidence            8887 445 5677777777777777776 5555544 67777777777777776665555555 6777777777764 45


Q ss_pred             hhhhhcc
Q 040888          227 EELKDIA  233 (495)
Q Consensus       227 ~~l~~l~  233 (495)
                      .+++++.
T Consensus       292 ~sLgnlh  298 (565)
T KOG0472|consen  292 YSLGNLH  298 (565)
T ss_pred             cccccce
Confidence            5555543

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.24  E-value=4.1e-12  Score=126.93  Aligned_cols=89  Identities=25%  Similarity=0.441  Sum_probs=78.3

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||||+.+ +.+.||+|.+.+........+...+|++++++++|||||.++++|......++|.|
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte   81 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTE   81 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEeh
Confidence            35666788999999999999985 58899999998876555556778999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+.+ +|+.+|
T Consensus        82 ~a~g-~L~~il   91 (808)
T KOG0597|consen   82 YAVG-DLFTIL   91 (808)
T ss_pred             hhhh-hHHHHH
Confidence            9976 999876

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.24  E-value=1.7e-13  Score=136.84  Aligned_cols=133  Identities=28%  Similarity=0.437  Sum_probs=62.1

Q ss_pred             cccccCCCCCCcEEECcCCCCCCCCCCCCC-CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCC
Q 040888           85 LGYQLTNLKSVSYLDVSNNNLKDSIPYQLP-PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNE  163 (495)
Q Consensus        85 ~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~-~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~  163 (495)
                      +|..+++|..|++|||+.|+++ .+|..+. --|+.|-+++|+++ .+|..++.+..|..|+.+.|.+. .+|..++.+.
T Consensus       113 ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~  189 (722)
T KOG0532|consen  113 IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT  189 (722)
T ss_pred             cchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH
Confidence            3444444555555555555544 2332222 34445555555544 44444444445555555555544 3444444455


Q ss_pred             CCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCc
Q 040888          164 KLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFS  222 (495)
Q Consensus       164 ~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~  222 (495)
                      +|+.|++..|++. .+|..+..| .|..||++.|+++-.+-.+..+. |++|-|.+|.|.
T Consensus       190 slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  190 SLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             HHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence            5555555555544 334444433 34455555555544443344443 555555555554

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.23  E-value=2.6e-11  Score=120.91  Aligned_cols=92  Identities=18%  Similarity=0.324  Sum_probs=80.8

Q ss_pred             hccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEE
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~l  480 (495)
                      ..++|+....||+|+||.||.|+-+ +|..+|+|+|++..+.. ...+...+|-.+|...++|.||+|+-.|.+.+..||
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYL  218 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYL  218 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEE
Confidence            4678999999999999999999874 59999999998875432 235668899999999999999999999999999999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+||||+..+|
T Consensus       219 iMEylPGGD~mTLL  232 (550)
T KOG0605|consen  219 IMEYLPGGDMMTLL  232 (550)
T ss_pred             EEEecCCccHHHHH
Confidence            99999999998765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.23  E-value=6.5e-13  Score=127.57  Aligned_cols=148  Identities=32%  Similarity=0.466  Sum_probs=91.2

Q ss_pred             EeEEEcCCCCCccccccccCCCCCCcE-EECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcc
Q 040888           71 VTEIKLSGLGLNGQLGYQLTNLKSVSY-LDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLG  147 (495)
Q Consensus        71 v~~l~L~~n~l~g~~~~~~~~l~~L~~-L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~  147 (495)
                      |+.++++.|++. ++|..+..+..+.+ +++++|.+ +-+|..+.  ++|+.|+|++|-+. .+|.+++.+..|+.|+++
T Consensus       390 Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS  466 (565)
T KOG0472|consen  390 VTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLS  466 (565)
T ss_pred             eEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccc
Confidence            777888887775 34544444444333 33333333 24444333  56666777666665 566666666667777777


Q ss_pred             cCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCc
Q 040888          148 SNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFS  222 (495)
Q Consensus       148 ~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~  222 (495)
                      +|+|. .+|..+..+..|+.+-.++|++....|..+.++.+|+.|||.+|.+...++.++++. |++|++.+|+|.
T Consensus       467 ~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  467 FNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            77665 556655555556666666666654444446777777777777777766666666666 777777777766

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.22  E-value=1.6e-11  Score=124.54  Aligned_cols=91  Identities=29%  Similarity=0.504  Sum_probs=76.4

Q ss_pred             ccCCcccceeccCCceEEEEEEc------CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCC
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQG  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~  476 (495)
                      .++|...+.||+|+||.||+|+.      .++..||||+++..... ...+.+.+|++++..+ +|||||+++++|...+
T Consensus        34 ~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~-~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~  112 (375)
T cd05104          34 RNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHL-TEREALMSELKVLSYLGNHINIVNLLGACTVGG  112 (375)
T ss_pred             hHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCc-HHHHHHHHHHHHHHHhcCCcceeeeeeeeccCC
Confidence            44677789999999999999963      24668999999754321 2346789999999999 8999999999999999


Q ss_pred             EEEEEEEecCCCCHhhhhC
Q 040888          477 HNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L~  495 (495)
                      ..++||||+++|+|.++++
T Consensus       113 ~~~lv~E~~~~g~L~~~l~  131 (375)
T cd05104         113 PTLVITEYCCYGDLLNFLR  131 (375)
T ss_pred             cceeeehhccCCcHHHHHH
Confidence            9999999999999998873

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.22  E-value=2.9e-11  Score=116.55  Aligned_cols=89  Identities=21%  Similarity=0.418  Sum_probs=76.0

Q ss_pred             cCCcccceeccCCceEEEEEEcC----CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~l  480 (495)
                      ++|+..+.||+|+||.||+|.+.    .+..||+|.++.... ....+.|.+|+..+.+++||||++++|++..++..++
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l   83 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCS-DKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMI   83 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCC-HHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEE
Confidence            45677899999999999999863    356899999976432 2234679999999999999999999999999999999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+++|+|.+++
T Consensus        84 v~e~~~~~~L~~~l   97 (266)
T cd05064          84 VTEYMSNGALDSFL   97 (266)
T ss_pred             EEEeCCCCcHHHHH
Confidence            99999999999876

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.22  E-value=9.4e-12  Score=117.17  Aligned_cols=90  Identities=21%  Similarity=0.344  Sum_probs=74.0

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--CEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ--GHNIL  480 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~~~l  480 (495)
                      .++|...+.|++|.||.||+|+. +++..||+|+++.+....+..-.-.+||.+|.+++|||||.+..+....  +..|+
T Consensus        75 v~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~  154 (419)
T KOG0663|consen   75 VEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYI  154 (419)
T ss_pred             HHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeee
Confidence            45677789999999999999998 4689999999987654333334568999999999999999998888653  56999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      |||||+. ||...+
T Consensus       155 VMe~~Eh-DLksl~  167 (419)
T KOG0663|consen  155 VMEYVEH-DLKSLM  167 (419)
T ss_pred             eHHHHHh-hHHHHH
Confidence            9999986 777665

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.21  E-value=4.6e-11  Score=117.51  Aligned_cols=89  Identities=28%  Similarity=0.492  Sum_probs=74.8

Q ss_pred             cCCcccceeccCCceEEEEEEcCC-----------------CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcce
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPD-----------------GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE  467 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~-----------------g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~  467 (495)
                      ++|...+.||+|+||.||+|..++                 +..||+|.+..... .....+|.+|++++.+++||||++
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~   83 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDAN-KNARNDFLKEVKILSRLKDPNIIR   83 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCC-HHHHHHHHHHHHHHhhcCCCCeeE
Confidence            356677899999999999997532                 34799999875432 223567999999999999999999


Q ss_pred             EEEEEEeCCEEEEEEEecCCCCHhhhh
Q 040888          468 LVGFCSEQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       468 l~g~~~~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      ++++|...+..++||||+++|+|.+++
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l  110 (304)
T cd05096          84 LLGVCVDEDPLCMITEYMENGDLNQFL  110 (304)
T ss_pred             EEEEEecCCceEEEEecCCCCcHHHHH
Confidence            999999999999999999999998876

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.21  E-value=6.5e-13  Score=122.12  Aligned_cols=90  Identities=21%  Similarity=0.426  Sum_probs=76.4

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEE-EEEeCCE-EEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVG-FCSEQGH-NILI  481 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g-~~~~~~~-~~lv  481 (495)
                      .+|...++||+|+||.|||+.. .+|..||.|.++-+.......++...|+.+|++++|||||+.++ .+.++.+ ..+|
T Consensus        19 ~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlniv   98 (375)
T KOG0591|consen   19 ADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIV   98 (375)
T ss_pred             HHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHH
Confidence            4566678999999999999975 78999999999866555555778999999999999999999988 4445544 7899


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+..|||.+.+
T Consensus        99 mE~c~~GDLsqmI  111 (375)
T KOG0591|consen   99 MELCDAGDLSQMI  111 (375)
T ss_pred             HHhhcccCHHHHH
Confidence            9999999998875

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.20  E-value=4.6e-11  Score=121.57  Aligned_cols=89  Identities=17%  Similarity=0.235  Sum_probs=76.8

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      .|...+.||+|+||+||+|+. .+++.||+|++...... ....+.+.+|++++.+++|+|||++++++.+.+..++|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            467789999999999999987 46889999999754321 2234578999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        82 ~~~gg~L~~~l   92 (381)
T cd05626          82 YIPGGDMMSLL   92 (381)
T ss_pred             cCCCCcHHHHH
Confidence            99999998876

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.20  E-value=5e-12  Score=125.24  Aligned_cols=113  Identities=28%  Similarity=0.390  Sum_probs=48.5

Q ss_pred             ccCCCCCCcEEECcCCCCCCCCCCCCC-----CCCcEEECcCCcCCC----CcchhccCC-CCCcEEEcccCcCCCc---
Q 040888           88 QLTNLKSVSYLDVSNNNLKDSIPYQLP-----PNLKHLDLSENQFSG----TVPYSISQM-SELKYLNLGSNQLNGQ---  154 (495)
Q Consensus        88 ~~~~l~~L~~L~Ls~N~l~g~~p~~~~-----~~L~~L~Ls~N~l~g----~~p~~~~~l-~~L~~L~L~~N~l~g~---  154 (495)
                      .+..+++|+.|+|++|.+.+..+..+.     ++|++|++++|++++    .+...+..+ ++|+.|+|++|.+++.   
T Consensus        76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence            344444555555555554432222111     125555555555442    122233333 4555555555555421   


Q ss_pred             -cchhhhCCCCCcEEEccCCcCCCc----CcccccCCCCCCEEeccCCccc
Q 040888          155 -LSDMFQKNEKLETLDLSKNQLTGE----LPRSFASLSSLKKLYLQNNQFT  200 (495)
Q Consensus       155 -~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~  200 (495)
                       ++..+..+.+|+.|++++|.+++.    ++..+..+++|+.|+|++|.++
T Consensus       156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence             222333444455555555555421    2222333345555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.19  E-value=5.8e-11  Score=120.66  Aligned_cols=90  Identities=19%  Similarity=0.280  Sum_probs=77.0

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||++.. .+++.||||++...... ....+.+.+|++++.+++|||||++++++...+..++||
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence            3677789999999999999987 46899999998654221 122456889999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        81 E~~~gg~L~~~l   92 (377)
T cd05629          81 EFLPGGDLMTML   92 (377)
T ss_pred             eCCCCCcHHHHH
Confidence            999999998876

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>PHA02988 hypothetical protein; Provisional

Probab=99.19  E-value=1.2e-10  Score=113.58  Aligned_cols=96  Identities=22%  Similarity=0.343  Sum_probs=76.7

Q ss_pred             cccHHHHHHhccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccc-cHHHHHHHHHHHhcCCCCCcceEEEEE
Q 040888          394 PFSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRA-NSESFSEIVQNISRIRHTNIAELVGFC  472 (495)
Q Consensus       394 ~~~~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~-~~~~f~~e~~~l~~l~H~niv~l~g~~  472 (495)
                      .++.+++..     .....||+|++|.||+|.+ +|+.||||+++....... ..+.|.+|+++|.+++|||||+++|++
T Consensus        14 ~i~~~~i~~-----~~~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~   87 (283)
T PHA02988         14 CIESDDIDK-----YTSVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFI   87 (283)
T ss_pred             ecCHHHcCC-----CCCeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeE
Confidence            445566632     2247899999999999999 688999999976532211 146788999999999999999999999


Q ss_pred             Ee----CCEEEEEEEecCCCCHhhhhC
Q 040888          473 SE----QGHNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       473 ~~----~~~~~lv~ey~~~GsL~~~L~  495 (495)
                      .+    ....++||||+++|+|.++++
T Consensus        88 ~~~~~~~~~~~lv~Ey~~~g~L~~~l~  114 (283)
T PHA02988         88 IDIVDDLPRLSLILEYCTRGYLREVLD  114 (283)
T ss_pred             EecccCCCceEEEEEeCCCCcHHHHHh
Confidence            77    346789999999999998863

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.19  E-value=6.4e-11  Score=113.34  Aligned_cols=88  Identities=24%  Similarity=0.475  Sum_probs=76.8

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      ++|...+.||+|+||.||++.+.++..+|+|.+.....   ..++|..|++++++++||||++++++|...+..++||||
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~   80 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAM---SEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEF   80 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCceEEEEecccCCc---cHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEc
Confidence            34666788999999999999998888899999865432   246789999999999999999999999999999999999


Q ss_pred             cCCCCHhhhhC
Q 040888          485 YRNGSLHEFLH  495 (495)
Q Consensus       485 ~~~GsL~~~L~  495 (495)
                      +++|+|.++++
T Consensus        81 ~~~~~L~~~~~   91 (256)
T cd05114          81 MENGCLLNYLR   91 (256)
T ss_pred             CCCCcHHHHHH
Confidence            99999998763

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.18  E-value=7.2e-11  Score=113.79  Aligned_cols=93  Identities=26%  Similarity=0.312  Sum_probs=80.4

Q ss_pred             HHHhccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEE
Q 040888          400 LLTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       400 ~~~~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  478 (495)
                      ++.+++++.....||+|+||.||+|... ++..||+|.+.....  ...+.+.+|++++++++|+||+++++++..++..
T Consensus         3 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   80 (268)
T cd06624           3 YEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDS--RYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFF   80 (268)
T ss_pred             cccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCH--HHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEE
Confidence            4556777877889999999999999974 578899999875432  2356799999999999999999999999999999


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++|+||+++++|.+++
T Consensus        81 ~lv~e~~~~~~L~~~l   96 (268)
T cd06624          81 KIFMEQVPGGSLSALL   96 (268)
T ss_pred             EEEEecCCCCCHHHHH
Confidence            9999999999999876

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.18  E-value=5.3e-11  Score=120.27  Aligned_cols=90  Identities=18%  Similarity=0.324  Sum_probs=77.5

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|+.. +++.||||++...... ....+.+.+|++++..++||||+++++++..++..++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            36788899999999999999984 5899999999754221 122456889999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        81 E~~~~g~L~~~l   92 (364)
T cd05599          81 EYLPGGDMMTLL   92 (364)
T ss_pred             CCCCCcHHHHHH
Confidence            999999999876

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.18  E-value=9.6e-11  Score=116.96  Aligned_cols=89  Identities=21%  Similarity=0.253  Sum_probs=77.6

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|+..+.||+|+||.||++... ++..+|+|.+..... ....+.+.+|++++.+++|+|||+++++|..++..++|||
T Consensus         5 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (333)
T cd06650           5 DDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIK-PAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (333)
T ss_pred             hhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccC-HHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEe
Confidence            56888899999999999999985 588999998875422 2234678999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        84 ~~~~~~L~~~l   94 (333)
T cd06650          84 HMDGGSLDQVL   94 (333)
T ss_pred             cCCCCcHHHHH
Confidence            99999999876

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.18  E-value=6.5e-12  Score=124.43  Aligned_cols=154  Identities=32%  Similarity=0.451  Sum_probs=118.5

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCC---CcEEECcCCCCCCC----CC---CCCCCCCcEEECcCCcCCCC----cchh
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKS---VSYLDVSNNNLKDS----IP---YQLPPNLKHLDLSENQFSGT----VPYS  134 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~---L~~L~Ls~N~l~g~----~p---~~~~~~L~~L~Ls~N~l~g~----~p~~  134 (495)
                      .+++.|+|++|.+.+..+..+..+..   |+.|++++|++++.    +.   ....++|+.|+|++|.+++.    ++..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            58999999999998777766666665   99999999998842    11   12236899999999999954    3445


Q ss_pred             ccCCCCCcEEEcccCcCCCc----cchhhhCCCCCcEEEccCCcCCCc----CcccccCCCCCCEEeccCCcccccc-cc
Q 040888          135 ISQMSELKYLNLGSNQLNGQ----LSDMFQKNEKLETLDLSKNQLTGE----LPRSFASLSSLKKLYLQNNQFTGSI-NV  205 (495)
Q Consensus       135 ~~~l~~L~~L~L~~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~g~~-~~  205 (495)
                      +..+.+|+.|+|++|.+++.    ++..+..+++|+.|+|++|.+++.    ++..+..+++|++|++++|.+++.. ..
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~  240 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA  240 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence            67788999999999999853    445566778999999999999754    3455677889999999999998622 11


Q ss_pred             c-C-----CccCcEEEeecCCCc
Q 040888          206 L-G-----KLPLDELNVENNKFS  222 (495)
Q Consensus       206 ~-~-----~~~L~~l~l~~N~l~  222 (495)
                      + .     ...|+.|++++|.++
T Consensus       241 l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         241 LASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHhccCCCceEEEccCCCCC
Confidence            1 1     124999999999987

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.17  E-value=4.2e-11  Score=122.34  Aligned_cols=91  Identities=32%  Similarity=0.549  Sum_probs=76.3

Q ss_pred             ccCCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-CCCcceEEEEEEeCC
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-HTNIAELVGFCSEQG  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~  476 (495)
                      .++|...+.||+|+||.||+|.+.      .+..||||++...... ...+.+.+|++++.++. |||||+++++|...+
T Consensus        36 ~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~-~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~  114 (401)
T cd05107          36 RDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARS-SEKQALMSELKIMSHLGPHLNIVNLLGACTKGG  114 (401)
T ss_pred             HHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCCh-hHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCC
Confidence            345667899999999999999863      3468999999754322 22457899999999997 999999999999999


Q ss_pred             EEEEEEEecCCCCHhhhhC
Q 040888          477 HNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L~  495 (495)
                      ..++|+||+++|+|.++||
T Consensus       115 ~~~iv~E~~~~g~L~~~l~  133 (401)
T cd05107         115 PIYIITEYCRYGDLVDYLH  133 (401)
T ss_pred             CcEEEEeccCCCcHHHHHH
Confidence            9999999999999999874

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.17  E-value=2.8e-11  Score=122.14  Aligned_cols=97  Identities=25%  Similarity=0.436  Sum_probs=84.3

Q ss_pred             cHHHHHHhccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC
Q 040888          396 SMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ  475 (495)
Q Consensus       396 ~~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~  475 (495)
                      +.+++...-+.+.....||+|+||+||+|.+.+  .||||.+..........+.|..||.++++.||.||+-+.|||...
T Consensus       383 s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p  460 (678)
T KOG0193|consen  383 SLEEWEIPPEEVLLGERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNP  460 (678)
T ss_pred             cccccccCHHHhhccceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCC
Confidence            345666666667778999999999999999943  589999988766555678999999999999999999999999987


Q ss_pred             CEEEEEEEecCCCCHhhhhC
Q 040888          476 GHNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       476 ~~~~lv~ey~~~GsL~~~L~  495 (495)
                      +. ++|..++++-+|+.+||
T Consensus       461 ~~-AIiTqwCeGsSLY~hlH  479 (678)
T KOG0193|consen  461 PL-AIITQWCEGSSLYTHLH  479 (678)
T ss_pred             ce-eeeehhccCchhhhhcc
Confidence            77 99999999999999987

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.17  E-value=9.1e-11  Score=117.09  Aligned_cols=89  Identities=18%  Similarity=0.314  Sum_probs=77.2

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      +|...+.||+|+||.||+|+.. +++.||||++....... ...+.+.+|++++..++||||+++++++...+..++|||
T Consensus         2 ~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   81 (333)
T cd05600           2 DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAME   81 (333)
T ss_pred             CcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEe
Confidence            5778899999999999999985 58899999997543211 234678899999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        82 ~~~g~~L~~~l   92 (333)
T cd05600          82 YVPGGDFRTLL   92 (333)
T ss_pred             CCCCCCHHHHH
Confidence            99999999876

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.17  E-value=1.2e-10  Score=116.13  Aligned_cols=89  Identities=21%  Similarity=0.231  Sum_probs=77.6

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||+++.. ++..+|+|.+..... ....+.+.+|++++.+++||||+++++++..++..++|||
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (331)
T cd06649           5 DDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIK-PAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (331)
T ss_pred             ccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccC-HHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEee
Confidence            56788899999999999999985 588999999875422 2234679999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        84 ~~~~~~L~~~l   94 (331)
T cd06649          84 HMDGGSLDQVL   94 (331)
T ss_pred             cCCCCcHHHHH
Confidence            99999999876

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>PLN03210 Resistant to P

Probab=99.16  E-value=2.2e-10  Score=131.70  Aligned_cols=35  Identities=34%  Similarity=0.333  Sum_probs=20.6

Q ss_pred             CCcEEEccCCcCCCcCcccccCCCCCCEEeccCCc
Q 040888          164 KLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQ  198 (495)
Q Consensus       164 ~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~  198 (495)
                      +|+.|+|++|...+.+|.+++++++|+.|+|++|.
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~  813 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI  813 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence            45555555555555566666666666666666553

syringae 6; Provisional

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.16  E-value=3.9e-11  Score=119.96  Aligned_cols=91  Identities=23%  Similarity=0.488  Sum_probs=74.2

Q ss_pred             ccCCcccceeccCCceEEEEEEc------CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCC
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQG  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~  476 (495)
                      .++|...+.||+|+||.||+|..      .++..||||++..... ....+.+.+|++++.++ +|||||+++++|...+
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~   84 (338)
T cd05102           6 RDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGAT-ASEHKALMSELKILIHIGNHLNVVNLLGACTKPN   84 (338)
T ss_pred             hhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccc-hHHHHHHHHHHHHHHHhccCcceeeEEeEecCCC
Confidence            45677889999999999999974      2356899999975422 12346789999999999 8999999999987644


Q ss_pred             -EEEEEEEecCCCCHhhhhC
Q 040888          477 -HNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       477 -~~~lv~ey~~~GsL~~~L~  495 (495)
                       ..++||||+++|+|.++++
T Consensus        85 ~~~~lv~ey~~~g~L~~~l~  104 (338)
T cd05102          85 GPLMVIVEFCKYGNLSNFLR  104 (338)
T ss_pred             CceEEEEecCCCCcHHHHHH
Confidence             5789999999999998863

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.15  E-value=9.2e-11  Score=116.90  Aligned_cols=90  Identities=20%  Similarity=0.361  Sum_probs=77.3

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|... +++.||+|.+...... ....+.+.+|++++.+++||||+++++++..++..++||
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   97 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLL   97 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEE
Confidence            46777899999999999999985 5889999998754321 122457889999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        98 e~~~~~~L~~~l  109 (329)
T PTZ00263         98 EFVVGGELFTHL  109 (329)
T ss_pred             cCCCCChHHHHH
Confidence            999999998876

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.15  E-value=1.2e-10  Score=118.56  Aligned_cols=89  Identities=17%  Similarity=0.254  Sum_probs=76.5

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      .|...+.||+|+||.||+|+. .+++.||+|++...... ....+.+.+|++++++++|+|||++++++..++..++|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            467789999999999999987 46889999999754321 1224578899999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      ||++|+|.+++
T Consensus        82 ~~~gg~L~~~l   92 (382)
T cd05625          82 YIPGGDMMSLL   92 (382)
T ss_pred             CCCCCcHHHHH
Confidence            99999998876

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.15  E-value=1.4e-10  Score=117.73  Aligned_cols=89  Identities=15%  Similarity=0.257  Sum_probs=76.7

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      +|...+.||+|+||.||+++.. +++.||||.+...... ....+.+.+|++++.+++|+||+++++.+..++..++|||
T Consensus         2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E   81 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (376)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEe
Confidence            5778899999999999999874 5899999998754221 1224568899999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        82 ~~~~g~L~~~i   92 (376)
T cd05598          82 YIPGGDMMSLL   92 (376)
T ss_pred             CCCCCcHHHHH
Confidence            99999999876

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.15  E-value=6.3e-11  Score=115.90  Aligned_cols=89  Identities=18%  Similarity=0.267  Sum_probs=76.3

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      +|...+.||+|+||.||+|... +++.||+|++...... ....+.+.+|++++.+++||||+++++++.+++..++|||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   81 (291)
T cd05612           2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLME   81 (291)
T ss_pred             CceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEe
Confidence            5777899999999999999985 6899999998653221 1224568899999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        82 ~~~~~~L~~~~   92 (291)
T cd05612          82 YVPGGELFSYL   92 (291)
T ss_pred             CCCCCCHHHHH
Confidence            99999998876

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.14  E-value=5.3e-11  Score=114.36  Aligned_cols=85  Identities=35%  Similarity=0.672  Sum_probs=70.0

Q ss_pred             cceeccCCceEEEEEEcC-----CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          410 GRLLGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~-----~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      .+.||+|.||.||+|.+.     .+..|+||.+..... ....+.|.+|++.+.+++||||++++|+|...+..++|+||
T Consensus         4 ~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~   82 (259)
T PF07714_consen    4 IKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSS-EEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEY   82 (259)
T ss_dssp             EEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSS-HHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE-
T ss_pred             eeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccc-cccceeeeecccccccccccccccccccccccccccccccc
Confidence            478999999999999986     256899999965322 22367899999999999999999999999988889999999


Q ss_pred             cCCCCHhhhhC
Q 040888          485 YRNGSLHEFLH  495 (495)
Q Consensus       485 ~~~GsL~~~L~  495 (495)
                      +++|+|.++|+
T Consensus        83 ~~~g~L~~~L~   93 (259)
T PF07714_consen   83 CPGGSLDDYLK   93 (259)
T ss_dssp             -TTEBHHHHHH
T ss_pred             ccccccccccc
Confidence            99999999873

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.14  E-value=2.6e-11  Score=116.65  Aligned_cols=89  Identities=19%  Similarity=0.410  Sum_probs=78.0

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      .|...+.||+|.||+|-+|.. ..|+.||||.++++.... +..-...+|+++|+.+.||||+.++.+|...+.+.+|||
T Consensus        54 RyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivME  133 (668)
T KOG0611|consen   54 RYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVME  133 (668)
T ss_pred             HHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEE
Confidence            456668899999999999986 679999999998876533 223457899999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |..+|+|.+|+
T Consensus       134 YaS~GeLYDYi  144 (668)
T KOG0611|consen  134 YASGGELYDYI  144 (668)
T ss_pred             ecCCccHHHHH
Confidence            99999999986

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.13  E-value=1.5e-10  Score=117.45  Aligned_cols=95  Identities=20%  Similarity=0.386  Sum_probs=84.2

Q ss_pred             HHhccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          401 LTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       401 ~~~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      ......|.....||+|.|++|..|+.. .+..||+|.+++........+.+.+|+++|..+.|||||+++.+...+...+
T Consensus        52 ~~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~ly  131 (596)
T KOG0586|consen   52 SNSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLY  131 (596)
T ss_pred             cccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeE
Confidence            344677888999999999999999984 5999999999887665444566999999999999999999999999999999


Q ss_pred             EEEEecCCCCHhhhhC
Q 040888          480 LIYDYYRNGSLHEFLH  495 (495)
Q Consensus       480 lv~ey~~~GsL~~~L~  495 (495)
                      +|+||..+|++++||.
T Consensus       132 lV~eya~~ge~~~yl~  147 (596)
T KOG0586|consen  132 LVMEYASGGELFDYLV  147 (596)
T ss_pred             EEEEeccCchhHHHHH
Confidence            9999999999999873

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.13  E-value=2.3e-10  Score=112.92  Aligned_cols=89  Identities=20%  Similarity=0.213  Sum_probs=76.6

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|...+.||+|+||.||++... ++..+|+|.+..... ....+++.+|++++.+++||||++++++|..++..++|+||
T Consensus         2 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey   80 (308)
T cd06615           2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIK-PAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEH   80 (308)
T ss_pred             CceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccC-HHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeec
Confidence            5778899999999999999874 588899998865321 22245688999999999999999999999999999999999


Q ss_pred             cCCCCHhhhhC
Q 040888          485 YRNGSLHEFLH  495 (495)
Q Consensus       485 ~~~GsL~~~L~  495 (495)
                      +++|+|.++++
T Consensus        81 ~~~~~L~~~l~   91 (308)
T cd06615          81 MDGGSLDQVLK   91 (308)
T ss_pred             cCCCcHHHHHH
Confidence            99999998863

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.13  E-value=1.7e-10  Score=116.61  Aligned_cols=90  Identities=14%  Similarity=0.269  Sum_probs=77.0

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|... +++.||+|++...... ....+.+.+|++++.+++|+||+++++++.+....++||
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            46788899999999999999874 5889999999754321 122456888999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        81 E~~~gg~L~~~l   92 (363)
T cd05628          81 EFLPGGDMMTLL   92 (363)
T ss_pred             cCCCCCcHHHHH
Confidence            999999999876

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.13  E-value=6.5e-12  Score=132.15  Aligned_cols=123  Identities=32%  Similarity=0.358  Sum_probs=75.8

Q ss_pred             CcEEECcCCCCCCCCCCCC-C-CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccC
Q 040888           95 VSYLDVSNNNLKDSIPYQL-P-PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSK  172 (495)
Q Consensus        95 L~~L~Ls~N~l~g~~p~~~-~-~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~  172 (495)
                      |+.|.|.+|.|+...-+.+ . .+|+.|+|++|++.......+.++..|+.|+||+|+|+ .+|+.+..+..|++|...+
T Consensus       361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahs  439 (1081)
T KOG0618|consen  361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHS  439 (1081)
T ss_pred             HHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcC
Confidence            4555555555554321111 1 56677777777766333345566667777777777776 5666666667777777777


Q ss_pred             CcCCCcCcccccCCCCCCEEeccCCcccccc-cccCC-ccCcEEEeecCC
Q 040888          173 NQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGK-LPLDELNVENNK  220 (495)
Q Consensus       173 N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~-~~L~~l~l~~N~  220 (495)
                      |+|. ..| .+.+++.|+.+|++.|+|+... +.... ..|++||+++|.
T Consensus       440 N~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  440 NQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             Ccee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            7766 556 6777777777777777777544 22222 237777777775

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.13  E-value=1.4e-10  Score=117.43  Aligned_cols=95  Identities=18%  Similarity=0.289  Sum_probs=79.8

Q ss_pred             HHHhccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCE
Q 040888          400 LLTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGH  477 (495)
Q Consensus       400 ~~~~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  477 (495)
                      +....++|...+.||+|+||.||++... +++.+|+|.+...... ....+.+.+|+++++.++||||+++++++..++.
T Consensus        38 ~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~  117 (370)
T cd05621          38 LQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKY  117 (370)
T ss_pred             cCCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCE
Confidence            3344578888999999999999999985 5889999998653221 1224568899999999999999999999999999


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++||||+++|+|.+++
T Consensus       118 ~~lv~Ey~~gg~L~~~l  134 (370)
T cd05621         118 LYMVMEYMPGGDLVNLM  134 (370)
T ss_pred             EEEEEcCCCCCcHHHHH
Confidence            99999999999998876

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.13  E-value=1.8e-11  Score=127.13  Aligned_cols=85  Identities=22%  Similarity=0.437  Sum_probs=72.4

Q ss_pred             ccceeccCCceEEEEEEc-CCC----CEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          409 TGRLLGEGTIGRVYRAKY-PDG----KVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       409 ~~~~iG~G~~g~Vy~~~~-~~g----~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ..++||+|+||+||||.+ +.|    .+||+|++..... .....+|.+|+-.|++++||||++|+|+|.... ..||.+
T Consensus       700 k~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~-~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlvtq  777 (1177)
T KOG1025|consen  700 KDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTS-PKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLVTQ  777 (1177)
T ss_pred             hhceeccccceeEEeeeEecCCceecceeEEEEeeccCC-chhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHHHH
Confidence            468999999999999987 444    4789999876532 233678999999999999999999999998766 789999


Q ss_pred             ecCCCCHhhhhC
Q 040888          484 YYRNGSLHEFLH  495 (495)
Q Consensus       484 y~~~GsL~~~L~  495 (495)
                      |||.|.|.+|+|
T Consensus       778 ~mP~G~LlDyvr  789 (1177)
T KOG1025|consen  778 LMPLGCLLDYVR  789 (1177)
T ss_pred             hcccchHHHHHH
Confidence            999999999874

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.13  E-value=4.9e-12  Score=133.03  Aligned_cols=153  Identities=31%  Similarity=0.405  Sum_probs=121.6

Q ss_pred             CCCEeEEEcCCCCCc----------------------cccccccCCCCCCcEEECcCCCCCCCCCCCCC-----------
Q 040888           68 GSSVTEIKLSGLGLN----------------------GQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP-----------  114 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~----------------------g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~-----------  114 (495)
                      ...|+.|+...|+|+                      ..+|+.+..+++|++|||..|+|. ..|..+.           
T Consensus       263 ~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln  341 (1081)
T KOG0618|consen  263 CANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLN  341 (1081)
T ss_pred             cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHh
Confidence            356777777777764                      245667777888999999988886 3332210           


Q ss_pred             -----------------CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCC
Q 040888          115 -----------------PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTG  177 (495)
Q Consensus       115 -----------------~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g  177 (495)
                                       +.|+.|.|.+|.|+...-+.+-+..+|++|+|++|+|.......+.++..|+.|+||+|+|+ 
T Consensus       342 ~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-  420 (1081)
T KOG0618|consen  342 VSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-  420 (1081)
T ss_pred             hhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-
Confidence                             34777888888888777777888899999999999998555556788899999999999998 


Q ss_pred             cCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcc
Q 040888          178 ELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSG  223 (495)
Q Consensus       178 ~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g  223 (495)
                      .+|.++.++..|++|...+|++.-.+ .+..++ |+.+|+|.|+|+-
T Consensus       421 ~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  421 TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             hhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhh
Confidence            78899999999999999999988666 666666 9999999999874

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.12  E-value=1.6e-10  Score=115.65  Aligned_cols=90  Identities=23%  Similarity=0.373  Sum_probs=76.0

Q ss_pred             cCCcccceeccCCceEEEEEEcCC--CCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPD--GKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~--g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      ++|...+.||+|+||.||+|....  +..||+|++...... ....+.+.+|++++..++|||||++++++...+..++|
T Consensus        30 ~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv  109 (340)
T PTZ00426         30 EDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLV  109 (340)
T ss_pred             hhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEEE
Confidence            467778999999999999998643  468999998654221 12345788999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+++|+|.+++
T Consensus       110 ~Ey~~~g~L~~~i  122 (340)
T PTZ00426        110 LEFVIGGEFFTFL  122 (340)
T ss_pred             EeCCCCCcHHHHH
Confidence            9999999999876

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.12  E-value=1.1e-10  Score=118.17  Aligned_cols=92  Identities=18%  Similarity=0.289  Sum_probs=78.3

Q ss_pred             hccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEE
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~l  480 (495)
                      ..++|...+.||+|+||.||+++.. +++.||+|++...... ....+.+.+|+++++.++||||+++++++..++..++
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~l  120 (370)
T cd05596          41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYM  120 (370)
T ss_pred             CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEE
Confidence            4567888999999999999999984 5889999999653221 1224567899999999999999999999999999999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+++|+|.+++
T Consensus       121 v~Ey~~gg~L~~~l  134 (370)
T cd05596         121 VMEYMPGGDLVNLM  134 (370)
T ss_pred             EEcCCCCCcHHHHH
Confidence            99999999998876

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.12  E-value=1.6e-10  Score=110.89  Aligned_cols=87  Identities=23%  Similarity=0.448  Sum_probs=77.1

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      ++|...+.||+|+||.||+|...++..||+|.+.....   ..+.|.+|+.++.+++|+||+++++++...+..++||||
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   82 (261)
T cd05072           6 ESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTM---SVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEY   82 (261)
T ss_pred             HHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCch---hHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEec
Confidence            45677899999999999999988888999999865332   256899999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        83 ~~~~~L~~~l   92 (261)
T cd05072          83 MAKGSLLDFL   92 (261)
T ss_pred             CCCCcHHHHH
Confidence            9999999876

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.12  E-value=2e-10  Score=109.58  Aligned_cols=90  Identities=24%  Similarity=0.451  Sum_probs=77.8

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|...+.||+|++|.||+|... ++..|++|.+..........+.+.+|++++++++|||++++++++..++..++||||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEY   80 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEe
Confidence            4666789999999999999984 688999999875433333457899999999999999999999999999999999999


Q ss_pred             cCCCCHhhhhC
Q 040888          485 YRNGSLHEFLH  495 (495)
Q Consensus       485 ~~~GsL~~~L~  495 (495)
                      +++++|.++++
T Consensus        81 ~~~~~L~~~l~   91 (256)
T cd08529          81 AENGDLHKLLK   91 (256)
T ss_pred             CCCCcHHHHHH
Confidence            99999998763

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.12  E-value=9.6e-11  Score=118.88  Aligned_cols=91  Identities=30%  Similarity=0.515  Sum_probs=76.2

Q ss_pred             ccCCcccceeccCCceEEEEEEc------CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCC
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQG  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~  476 (495)
                      .++|+..+.||+|+||.||+|+.      .++..||||++...... ...+.+.+|+++++.+ +|+|||+++++|...+
T Consensus        37 ~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~  115 (374)
T cd05106          37 RDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHT-DEREALMSELKILSHLGQHKNIVNLLGACTHGG  115 (374)
T ss_pred             HHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCH-HHHHHHHHHHHHHHhhccCCceeeEeeEecCCC
Confidence            34677889999999999999874      23458999999754322 2245788999999999 8999999999999999


Q ss_pred             EEEEEEEecCCCCHhhhhC
Q 040888          477 HNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L~  495 (495)
                      ..++||||+++|+|.++++
T Consensus       116 ~~~lv~ey~~~g~L~~~l~  134 (374)
T cd05106         116 PVLVITEYCCYGDLLNFLR  134 (374)
T ss_pred             CeEEeHhhccCCcHHHHHH
Confidence            9999999999999998863

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.12  E-value=2.2e-10  Score=114.33  Aligned_cols=90  Identities=26%  Similarity=0.404  Sum_probs=76.8

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccc-ccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHF-QRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+++.. +++.||+|.+..... .....+.|.+|+.++..++|+||+++++++..++..++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            36778899999999999999974 589999999975322 1223456889999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        81 e~~~g~~L~~~l   92 (331)
T cd05597          81 DYYVGGDLLTLL   92 (331)
T ss_pred             ecCCCCcHHHHH
Confidence            999999999876

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.12  E-value=2.1e-10  Score=114.48  Aligned_cols=90  Identities=23%  Similarity=0.356  Sum_probs=76.6

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccc-ccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHF-QRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+++.. +++.||+|.+..... .....+.+.+|+.++..++|+||+++++++...+..++||
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            36778899999999999999975 588999999875322 1222456888999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        81 Ey~~gg~L~~~l   92 (331)
T cd05624          81 DYYVGGDLLTLL   92 (331)
T ss_pred             eCCCCCcHHHHH
Confidence            999999999886

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.12  E-value=2.3e-10  Score=114.80  Aligned_cols=91  Identities=26%  Similarity=0.492  Sum_probs=77.3

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccc---cccHHHHHHHHHHHhcCC-CCCcceEEEEEEeCCEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQ---RANSESFSEIVQNISRIR-HTNIAELVGFCSEQGHN  478 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~  478 (495)
                      .+.|...+.||+|+||+||.|.. .++..||+|.+......   ....+...+|+.++++++ ||||++++.++......
T Consensus        16 ~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~~   95 (370)
T KOG0583|consen   16 IGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTKI   95 (370)
T ss_pred             cCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCeE
Confidence            45778889999999999999987 46899999977654211   122456678999999999 99999999999999999


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++||||+.+|+|++++
T Consensus        96 ~ivmEy~~gGdL~~~i  111 (370)
T KOG0583|consen   96 YIVMEYCSGGDLFDYI  111 (370)
T ss_pred             EEEEEecCCccHHHHH
Confidence            9999999999999986

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.11  E-value=2.4e-10  Score=111.38  Aligned_cols=88  Identities=18%  Similarity=0.302  Sum_probs=74.8

Q ss_pred             CcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          407 FATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      |...+.||+|+||.||+|.. .+|+.||||.+....... .....+.+|++++.+++|+|++++.+++..++..++|+||
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEe
Confidence            56678999999999999987 568999999987543221 2234688999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        82 ~~~g~L~~~~   91 (285)
T cd05631          82 MNGGDLKFHI   91 (285)
T ss_pred             cCCCcHHHHH
Confidence            9999997764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>PLN03210 Resistant to P

Probab=99.11  E-value=6.1e-10  Score=128.10  Aligned_cols=161  Identities=21%  Similarity=0.247  Sum_probs=109.4

Q ss_pred             CEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC-CC---------------------CcEEECcCCcC
Q 040888           70 SVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP-PN---------------------LKHLDLSENQF  127 (495)
Q Consensus        70 ~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~-~~---------------------L~~L~Ls~N~l  127 (495)
                      +++.|+|.+|..-..+|..++++++|+.|+|++|..-+.+|..+. ++                     |+.|+|++|.+
T Consensus       658 ~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i  737 (1153)
T PLN03210        658 NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAI  737 (1153)
T ss_pred             cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCcc
Confidence            466666666665566777777777777777777654445554332 34                     44444445544


Q ss_pred             CCCcchhc------------------------------cCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCC
Q 040888          128 SGTVPYSI------------------------------SQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTG  177 (495)
Q Consensus       128 ~g~~p~~~------------------------------~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g  177 (495)
                      . .+|..+                              ..+++|+.|+|++|...+.+|..++++++|+.|++++|..-+
T Consensus       738 ~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~  816 (1153)
T PLN03210        738 E-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE  816 (1153)
T ss_pred             c-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence            3 333321                              112467888888888888899999999999999999987556


Q ss_pred             cCcccccCCCCCCEEeccCCcccccccccCCccCcEEEeecCCCcccCchhhhhccc
Q 040888          178 ELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDIAK  234 (495)
Q Consensus       178 ~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~L~~l~l~~N~l~g~~p~~l~~l~~  234 (495)
                      .+|..+ ++++|+.|+|++|.....++... ..|+.|+|++|.++ .+|.++..++.
T Consensus       817 ~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~-~nL~~L~Ls~n~i~-~iP~si~~l~~  870 (1153)
T PLN03210        817 TLPTGI-NLESLESLDLSGCSRLRTFPDIS-TNISDLNLSRTGIE-EVPWWIEKFSN  870 (1153)
T ss_pred             eeCCCC-CccccCEEECCCCCccccccccc-cccCEeECCCCCCc-cChHHHhcCCC
Confidence            788776 78999999999876443332211 12789999999887 57877776653

syringae 6; Provisional

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.11  E-value=2.2e-10  Score=111.65  Aligned_cols=88  Identities=19%  Similarity=0.309  Sum_probs=74.6

Q ss_pred             CcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          407 FATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      |...+.||+|+||.||++.. .+++.||||++....... .....+.+|++++++++||||+++++++..++..++||||
T Consensus         2 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05605           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEec
Confidence            56678999999999999987 468999999997543221 1235678899999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        82 ~~~~~L~~~~   91 (285)
T cd05605          82 MNGGDLKFHI   91 (285)
T ss_pred             cCCCcHHHHH
Confidence            9999998765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.11  E-value=2.6e-10  Score=109.71  Aligned_cols=89  Identities=24%  Similarity=0.412  Sum_probs=76.1

Q ss_pred             cCCcccceeccCCceEEEEEEcCC----CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPD----GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~----g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~l  480 (495)
                      ++|...+.||+|+||.||+|....    ...||||.+..... .....+|.+|+.++.+++||||+++++++...+..++
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~i   82 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSS-DKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMI   82 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCC-hHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEE
Confidence            467788999999999999998742    45899999875432 2235679999999999999999999999999999999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+++|+|.+++
T Consensus        83 v~e~~~~~~L~~~~   96 (266)
T cd05033          83 ITEYMENGSLDKFL   96 (266)
T ss_pred             EEEcCCCCCHHHHH
Confidence            99999999999876

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.10  E-value=1.1e-10  Score=111.88  Aligned_cols=91  Identities=27%  Similarity=0.501  Sum_probs=79.7

Q ss_pred             hccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      +..+|...+.||+|+||.||+|...++..+|+|.+.....  ...+.+.+|++++.+++|+||+++++++...+..++||
T Consensus         4 ~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   81 (261)
T cd05148           4 PREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDL--LKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIIT   81 (261)
T ss_pred             cHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccch--hhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEE
Confidence            4456778899999999999999998899999999876432  12467899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhhC
Q 040888          483 DYYRNGSLHEFLH  495 (495)
Q Consensus       483 ey~~~GsL~~~L~  495 (495)
                      ||+++|+|.++++
T Consensus        82 e~~~~~~L~~~~~   94 (261)
T cd05148          82 ELMEKGSLLAFLR   94 (261)
T ss_pred             eecccCCHHHHHh
Confidence            9999999998863

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.10  E-value=2.3e-10  Score=111.84  Aligned_cols=89  Identities=22%  Similarity=0.371  Sum_probs=80.4

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|.....||.|..+.||+|.. +.+..||||++..+.+... .+...+|+..|+-++||||++.+..|..+...|+||.
T Consensus        26 ~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~-ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmp  104 (516)
T KOG0582|consen   26 KDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNND-LDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMP  104 (516)
T ss_pred             cceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhh-HHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeeh
Confidence            4677889999999999999986 6789999999988766543 6788999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      ||.+|++.+.+
T Consensus       105 fMa~GS~ldIi  115 (516)
T KOG0582|consen  105 FMAGGSLLDII  115 (516)
T ss_pred             hhcCCcHHHHH
Confidence            99999998876

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.10  E-value=2.8e-10  Score=112.80  Aligned_cols=84  Identities=23%  Similarity=0.405  Sum_probs=71.3

Q ss_pred             ceeccCCceEEEEEEc----CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecC
Q 040888          411 RLLGEGTIGRVYRAKY----PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYR  486 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~----~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~  486 (495)
                      +.||+|+||.||++..    .+|+.||+|++............+..|++++.+++||||+++++++..++..++||||++
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            5799999999999875    358899999997643322234567889999999999999999999999999999999999


Q ss_pred             CCCHhhhh
Q 040888          487 NGSLHEFL  494 (495)
Q Consensus       487 ~GsL~~~L  494 (495)
                      +|+|.+++
T Consensus        82 ~~~L~~~l   89 (318)
T cd05582          82 GGDLFTRL   89 (318)
T ss_pred             CCcHHHHH
Confidence            99998875

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.09  E-value=4.7e-10  Score=108.00  Aligned_cols=88  Identities=23%  Similarity=0.351  Sum_probs=76.2

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||+|+. .+++.||+|++.....  .....+.+|+.++.+++||||+++++++..++..++|+|
T Consensus         9 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~--~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e   86 (267)
T cd06646           9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPG--DDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICME   86 (267)
T ss_pred             hhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCcc--chHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEe
Confidence            4677789999999999999997 5688999999865422  224568899999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        87 ~~~~~~L~~~~   97 (267)
T cd06646          87 YCGGGSLQDIY   97 (267)
T ss_pred             CCCCCcHHHHH
Confidence            99999998875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.09  E-value=4.7e-10  Score=107.85  Aligned_cols=88  Identities=25%  Similarity=0.532  Sum_probs=75.4

Q ss_pred             CcccceeccCCceEEEEEEcCCCCEEEEEEecCcccc----cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          407 FATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQ----RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~----~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      |...+.||+|+||.||+|...+++.+|||.+......    ....+.+.+|++.+++++|+||++++++|...+..++|+
T Consensus         2 ~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   81 (265)
T cd06631           2 WTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFM   81 (265)
T ss_pred             ccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEE
Confidence            5567889999999999999888999999998653211    112356889999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        82 e~~~~~~L~~~l   93 (265)
T cd06631          82 EFVPGGSISSIL   93 (265)
T ss_pred             ecCCCCcHHHHH
Confidence            999999999876

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.09  E-value=2.5e-10  Score=109.56  Aligned_cols=88  Identities=23%  Similarity=0.458  Sum_probs=77.9

Q ss_pred             ccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      .++|...+.||+|++|.||+|...+++.||+|.++....   ..++|.+|++++++++|+||+++++++...+..++|||
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (261)
T cd05068           5 RTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTM---DPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTE   81 (261)
T ss_pred             hhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcc---cHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeee
Confidence            445777899999999999999987788899999875432   25679999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        82 ~~~~~~L~~~~   92 (261)
T cd05068          82 LMKYGSLLEYL   92 (261)
T ss_pred             cccCCcHHHHH
Confidence            99999999876

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.09  E-value=2.3e-10  Score=115.92  Aligned_cols=98  Identities=18%  Similarity=0.305  Sum_probs=81.8

Q ss_pred             HHHHHHhccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccc-ccccHHHHHHHHHHHhcCCCCCcceEEEEEEe
Q 040888          397 MADLLTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHF-QRANSESFSEIVQNISRIRHTNIAELVGFCSE  474 (495)
Q Consensus       397 ~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~  474 (495)
                      ..++....++|...+.||+|+||.||++... +++.+|+|.+..... .....+.+.+|++++..++||||+++++++..
T Consensus        35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~  114 (371)
T cd05622          35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  114 (371)
T ss_pred             HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc
Confidence            3445556688999999999999999999985 588999999865322 11224568899999999999999999999999


Q ss_pred             CCEEEEEEEecCCCCHhhhh
Q 040888          475 QGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       475 ~~~~~lv~ey~~~GsL~~~L  494 (495)
                      ++..++||||+++|+|.+++
T Consensus       115 ~~~~~lv~Ey~~gg~L~~~~  134 (371)
T cd05622         115 DRYLYMVMEYMPGGDLVNLM  134 (371)
T ss_pred             CCEEEEEEcCCCCCcHHHHH
Confidence            99999999999999998875

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.09  E-value=1.1e-10  Score=113.07  Aligned_cols=90  Identities=22%  Similarity=0.341  Sum_probs=77.1

Q ss_pred             CCcccceeccCCceEEEEEEcCC-CCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      .|...+.||+|..|+||.+++++ +..+|+|++.+.... +....+...|-++|+.++||.|+.|++.+..++..+++||
T Consensus        78 ~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~me  157 (459)
T KOG0610|consen   78 HFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVME  157 (459)
T ss_pred             HHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEe
Confidence            45556889999999999999965 689999999876543 2234566788899999999999999999999999999999


Q ss_pred             ecCCCCHhhhhC
Q 040888          484 YYRNGSLHEFLH  495 (495)
Q Consensus       484 y~~~GsL~~~L~  495 (495)
                      ||+||+|+..+|
T Consensus       158 yCpGGdL~~Lrq  169 (459)
T KOG0610|consen  158 YCPGGDLHSLRQ  169 (459)
T ss_pred             cCCCccHHHHHh
Confidence            999999987754

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.09  E-value=2.5e-10  Score=113.71  Aligned_cols=90  Identities=22%  Similarity=0.328  Sum_probs=77.2

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccc-ccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHF-QRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||++... +++.||+|++..... .....+.+.+|++++..++|+||+++++++...+..++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            36778899999999999999874 689999999976432 1123456889999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        81 e~~~~~~L~~~l   92 (330)
T cd05601          81 EYQPGGDLLSLL   92 (330)
T ss_pred             CCCCCCCHHHHH
Confidence            999999999876

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.09  E-value=2.6e-10  Score=111.08  Aligned_cols=88  Identities=22%  Similarity=0.378  Sum_probs=74.8

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|...+.||+|+||.||+|+.+ +++.||||++..........+.+.+|++++.+++||||+++++++..++..++||||
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (287)
T cd07848           2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEY   81 (287)
T ss_pred             CceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEec
Confidence            5777899999999999999985 588999999875433223356788999999999999999999999999999999999


Q ss_pred             cCCCCHhhh
Q 040888          485 YRNGSLHEF  493 (495)
Q Consensus       485 ~~~GsL~~~  493 (495)
                      ++++.+..+
T Consensus        82 ~~~~~l~~~   90 (287)
T cd07848          82 VEKNMLELL   90 (287)
T ss_pred             CCCCHHHHH
Confidence            998876543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.09  E-value=1.9e-10  Score=115.53  Aligned_cols=90  Identities=20%  Similarity=0.349  Sum_probs=77.9

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|... +++.||+|++....... ...+.+.+|++++..++|+||+++++++..++..++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence            35777899999999999999985 68999999997543221 23567899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        81 e~~~~~~L~~~l   92 (350)
T cd05573          81 EYMPGGDLMNLL   92 (350)
T ss_pred             cCCCCCCHHHHH
Confidence            999999999876

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.08  E-value=3.6e-10  Score=112.28  Aligned_cols=84  Identities=20%  Similarity=0.311  Sum_probs=71.5

Q ss_pred             ceeccCCceEEEEEEc-CCCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCC
Q 040888          411 RLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNG  488 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~G  488 (495)
                      +.||+|+||.||++.. .+|..||+|++...... ......+.+|++++.+++||||+++++++...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            4689999999999987 46899999999754221 122456788999999999999999999999999999999999999


Q ss_pred             CHhhhh
Q 040888          489 SLHEFL  494 (495)
Q Consensus       489 sL~~~L  494 (495)
                      +|.+++
T Consensus        81 ~L~~~l   86 (323)
T cd05595          81 ELFFHL   86 (323)
T ss_pred             cHHHHH
Confidence            998765

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.08  E-value=2.5e-10  Score=114.94  Aligned_cols=87  Identities=18%  Similarity=0.344  Sum_probs=73.5

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|...+.||+|+||.||+|+.. +++.||||.+..... ....+.+.+|++++++++|+||+++++++...+..++||||
T Consensus        75 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  153 (353)
T PLN00034         75 ELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHE-DTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEF  153 (353)
T ss_pred             HHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCc-HHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEec
Confidence            3445688999999999999874 689999999865422 22346789999999999999999999999999999999999


Q ss_pred             cCCCCHhhh
Q 040888          485 YRNGSLHEF  493 (495)
Q Consensus       485 ~~~GsL~~~  493 (495)
                      +++|+|.+.
T Consensus       154 ~~~~~L~~~  162 (353)
T PLN00034        154 MDGGSLEGT  162 (353)
T ss_pred             CCCCccccc
Confidence            999998653

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.08  E-value=5.2e-10  Score=107.46  Aligned_cols=90  Identities=20%  Similarity=0.385  Sum_probs=77.6

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|... +|+.||+|.++..... ....+.+.+|++++++++|+|++++++++...+..++||
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            56788899999999999999986 7999999998643222 122567899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        82 e~~~~~~L~~~l   93 (267)
T cd08224          82 ELADAGDLSRMI   93 (267)
T ss_pred             ecCCCCCHHHHH
Confidence            999999998765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.08  E-value=5.5e-10  Score=106.74  Aligned_cols=89  Identities=16%  Similarity=0.311  Sum_probs=76.9

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|+..+.||+|+||.||.+.. .++..+++|.+..........+++.+|++++++++|+||+++++++...+..+++|||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~   80 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEY   80 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEe
Confidence            366779999999999998886 4688999999875543333456789999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        81 ~~~~~L~~~~   90 (256)
T cd08221          81 ANGGTLYDKI   90 (256)
T ss_pred             cCCCcHHHHH
Confidence            9999999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.08  E-value=3.1e-10  Score=110.48  Aligned_cols=88  Identities=22%  Similarity=0.286  Sum_probs=75.5

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|...+.||+|+||.||++.. ++++.||+|.+..... ....+.|.+|++++..++||||+++++++...+..++||||
T Consensus         6 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (284)
T cd06620           6 DLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAK-SSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEF   84 (284)
T ss_pred             HHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCc-chHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEec
Confidence            456678999999999999987 4688999998865422 22356799999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        85 ~~~~~L~~~~   94 (284)
T cd06620          85 MDCGSLDRIY   94 (284)
T ss_pred             CCCCCHHHHH
Confidence            9999998765

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.08  E-value=4e-10  Score=113.79  Aligned_cols=90  Identities=13%  Similarity=0.297  Sum_probs=77.0

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccc-ccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHF-QRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||++... +++.||+|++..... .....+.+.+|++++.+++|+||+++++++...+..++||
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            36777899999999999999885 589999999975422 1223456888999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        81 E~~~gg~L~~~l   92 (360)
T cd05627          81 EFLPGGDMMTLL   92 (360)
T ss_pred             eCCCCccHHHHH
Confidence            999999999876

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.08  E-value=4.2e-10  Score=112.01  Aligned_cols=85  Identities=16%  Similarity=0.280  Sum_probs=72.9

Q ss_pred             cceeccC--CceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecC
Q 040888          410 GRLLGEG--TIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYR  486 (495)
Q Consensus       410 ~~~iG~G--~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~  486 (495)
                      ..+||+|  +|++||++.. .+|+.||+|++..........+.+.+|+++++.++|||||+++++|..++..++|+||++
T Consensus         3 ~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~   82 (327)
T cd08227           3 LTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMA   82 (327)
T ss_pred             hhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccC
Confidence            4689999  7899999988 568999999997654323334567889999999999999999999999999999999999


Q ss_pred             CCCHhhhh
Q 040888          487 NGSLHEFL  494 (495)
Q Consensus       487 ~GsL~~~L  494 (495)
                      +|+|.+++
T Consensus        83 ~~~l~~~~   90 (327)
T cd08227          83 YGSAKDLI   90 (327)
T ss_pred             CCcHHHHH
Confidence            99998875

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.08  E-value=4e-10  Score=111.97  Aligned_cols=84  Identities=21%  Similarity=0.309  Sum_probs=71.7

Q ss_pred             ceeccCCceEEEEEEc-CCCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCC
Q 040888          411 RLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNG  488 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~G  488 (495)
                      +.||+|+||.||+++. .+|+.||+|++...... ......+.+|++++.+++||||+++.+++...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            4699999999999987 46899999999754321 122456889999999999999999999999999999999999999


Q ss_pred             CHhhhh
Q 040888          489 SLHEFL  494 (495)
Q Consensus       489 sL~~~L  494 (495)
                      +|.+++
T Consensus        81 ~L~~~l   86 (323)
T cd05571          81 ELFFHL   86 (323)
T ss_pred             cHHHHH
Confidence            998775

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.08  E-value=3.9e-10  Score=108.11  Aligned_cols=88  Identities=27%  Similarity=0.539  Sum_probs=78.0

Q ss_pred             ccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      .++|...+.||+|+||.||+|..+++..||||.+.....   ..+++.+|++++++++|+||+++++++......++|||
T Consensus         5 ~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   81 (261)
T cd05034           5 RESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTM---SPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTE   81 (261)
T ss_pred             hhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCcc---CHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEe
Confidence            456778899999999999999988888999999875432   24679999999999999999999999998889999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        82 ~~~~~~L~~~i   92 (261)
T cd05034          82 YMSKGSLLDFL   92 (261)
T ss_pred             ccCCCCHHHHH
Confidence            99999999876

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.08  E-value=4.2e-10  Score=107.10  Aligned_cols=83  Identities=24%  Similarity=0.463  Sum_probs=72.4

Q ss_pred             ceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCCCH
Q 040888          411 RLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSL  490 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~GsL  490 (495)
                      ++||+|+||.||+|..+++..+|+|.+..... ......|.+|++++.+++||||++++++|...+..++||||+++|+|
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   79 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLP-QELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDF   79 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCC-HHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcH
Confidence            36899999999999988899999999875432 22245789999999999999999999999999999999999999999


Q ss_pred             hhhh
Q 040888          491 HEFL  494 (495)
Q Consensus       491 ~~~L  494 (495)
                      .+++
T Consensus        80 ~~~~   83 (250)
T cd05085          80 LSFL   83 (250)
T ss_pred             HHHH
Confidence            8875

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.08  E-value=3.3e-10  Score=109.25  Aligned_cols=83  Identities=23%  Similarity=0.411  Sum_probs=69.9

Q ss_pred             ceeccCCceEEEEEEcCC---CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          411 RLLGEGTIGRVYRAKYPD---GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~~---g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      +.||+|+||.||+|+..+   +..+|+|.++.... ......|.+|+.++++++||||++++++|.+....++||||+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~   79 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSAS-VQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPL   79 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCC-hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCC
Confidence            358999999999998643   45789999875432 12245789999999999999999999999998889999999999


Q ss_pred             CCHhhhh
Q 040888          488 GSLHEFL  494 (495)
Q Consensus       488 GsL~~~L  494 (495)
                      |+|.+++
T Consensus        80 g~L~~~l   86 (269)
T cd05087          80 GDLKGYL   86 (269)
T ss_pred             CcHHHHH
Confidence            9999876

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.08  E-value=2.4e-10  Score=111.54  Aligned_cols=91  Identities=20%  Similarity=0.350  Sum_probs=76.0

Q ss_pred             hccCCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG  476 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~  476 (495)
                      .+++|...+.||+|+||.||+|..+      .+..||+|.+...... .....+.+|+.++.+++||||+++++++...+
T Consensus         4 ~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   82 (288)
T cd05061           4 SREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASL-RERIEFLNEASVMKGFTCHHVVRLLGVVSKGQ   82 (288)
T ss_pred             cHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCH-HHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC
Confidence            4567888899999999999999753      2458999998654321 22346889999999999999999999999999


Q ss_pred             EEEEEEEecCCCCHhhhh
Q 040888          477 HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L  494 (495)
                      ..++||||+++|+|.+++
T Consensus        83 ~~~lv~e~~~~g~L~~~l  100 (288)
T cd05061          83 PTLVVMELMAHGDLKSYL  100 (288)
T ss_pred             CcEEEEeCCCCCCHHHHH
Confidence            999999999999999886

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.08  E-value=7e-11  Score=101.93  Aligned_cols=86  Identities=19%  Similarity=0.368  Sum_probs=72.5

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|+..+.||+|.||+||||+.. .++.||+|+.+.+....+....-.+|+.+++.++|+|||++++....+...-+|+||
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~   82 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF   82 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHH
Confidence            3555688999999999999974 588999999987655444566789999999999999999999999999999999999


Q ss_pred             cCCCCHhh
Q 040888          485 YRNGSLHE  492 (495)
Q Consensus       485 ~~~GsL~~  492 (495)
                      +.. +|..
T Consensus        83 cdq-dlkk   89 (292)
T KOG0662|consen   83 CDQ-DLKK   89 (292)
T ss_pred             hhH-HHHH
Confidence            964 4433

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.08  E-value=4.6e-10  Score=122.67  Aligned_cols=90  Identities=23%  Similarity=0.357  Sum_probs=77.6

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|... +|+.||+|+++..... ....++|.+|++++++++|||||++++++..++..++||
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            46778899999999999999974 5899999999754221 122467999999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        82 EY~eGGSL~~lL   93 (932)
T PRK13184         82 PYIEGYTLKSLL   93 (932)
T ss_pred             EcCCCCCHHHHH
Confidence            999999998875

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.07  E-value=2.7e-10  Score=110.34  Aligned_cols=81  Identities=26%  Similarity=0.439  Sum_probs=67.9

Q ss_pred             eeccCCceEEEEEEcCC-------------------------CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcc
Q 040888          412 LLGEGTIGRVYRAKYPD-------------------------GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA  466 (495)
Q Consensus       412 ~iG~G~~g~Vy~~~~~~-------------------------g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv  466 (495)
                      .||+|+||.||+|.+..                         ...||+|.+.....  ...++|.+|++++++++||||+
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~--~~~~~~~~~~~~~~~l~h~niv   79 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHR--DIALAFFETASLMSQVSHIHLA   79 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHH--HHHHHHHHHHHHHhcCCCCCee
Confidence            58999999999997521                         13588999865432  2346788999999999999999


Q ss_pred             eEEEEEEeCCEEEEEEEecCCCCHhhhh
Q 040888          467 ELVGFCSEQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       467 ~l~g~~~~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      +++++|......++||||+++|+|..++
T Consensus        80 ~~~~~~~~~~~~~lv~ey~~~g~L~~~l  107 (274)
T cd05076          80 FVHGVCVRGSENIMVEEFVEHGPLDVCL  107 (274)
T ss_pred             eEEEEEEeCCceEEEEecCCCCcHHHHH
Confidence            9999999999999999999999998876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.07  E-value=3.7e-10  Score=108.78  Aligned_cols=89  Identities=21%  Similarity=0.415  Sum_probs=74.9

Q ss_pred             cCCcccceeccCCceEEEEEEcC----CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~l  480 (495)
                      ++|...+.||+|+||.||+|...    .+..+|+|.+..... ....+.|.+|+.++.+++||||+++++++..++..++
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   82 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYT-EKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMI   82 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCC-HHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEE
Confidence            35677899999999999999863    234799999875432 2235689999999999999999999999999999999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+++|+|.+++
T Consensus        83 v~e~~~~~~L~~~~   96 (267)
T cd05066          83 VTEYMENGSLDAFL   96 (267)
T ss_pred             EEEcCCCCCHHHHH
Confidence            99999999999886

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.07  E-value=5.2e-10  Score=112.36  Aligned_cols=91  Identities=24%  Similarity=0.419  Sum_probs=79.1

Q ss_pred             ccCCcccceeccCCceEEEEEEcCC-CCEEEEEEecCcccccc-cHHHHHHHHHHHhcCC-CCCcceEEEEEEeCCEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRA-NSESFSEIVQNISRIR-HTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~~-~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~l  480 (495)
                      ...|...+.||+|.||.||+|+.+. |+.+|+|.+.+...... ..+...+|+++|.++. |||||.+.+.+......++
T Consensus        34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~l  113 (382)
T KOG0032|consen   34 KEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYL  113 (382)
T ss_pred             cccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEE
Confidence            3456677899999999999999865 99999999987654321 2467899999999998 9999999999999999999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      |||++.+|+|++.+
T Consensus       114 vmEL~~GGeLfd~i  127 (382)
T KOG0032|consen  114 VMELCEGGELFDRI  127 (382)
T ss_pred             EEEecCCchHHHHH
Confidence            99999999999875

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.07  E-value=3.5e-10  Score=108.34  Aligned_cols=86  Identities=24%  Similarity=0.473  Sum_probs=75.1

Q ss_pred             CCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEec
Q 040888          406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYY  485 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~  485 (495)
                      +|...+.||+|+||.||+|...++..+|+|.+.....   ..++|.+|+.++.+++||||++++++|...+..++||||+
T Consensus         5 ~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd05113           5 DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM---SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYM   81 (256)
T ss_pred             HeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcc---cHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcC
Confidence            4566788999999999999987777899999875432   2467999999999999999999999999888899999999


Q ss_pred             CCCCHhhhh
Q 040888          486 RNGSLHEFL  494 (495)
Q Consensus       486 ~~GsL~~~L  494 (495)
                      ++|+|.+++
T Consensus        82 ~~~~l~~~i   90 (256)
T cd05113          82 SNGCLLNYL   90 (256)
T ss_pred             CCCcHHHHH
Confidence            999998876

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.07  E-value=2.6e-10  Score=110.50  Aligned_cols=91  Identities=20%  Similarity=0.369  Sum_probs=76.5

Q ss_pred             hccCCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG  476 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~  476 (495)
                      ++++|...+.||+|+||.||+|...      .+..||||++..... .....+|.+|+.++.+++||||+++++++....
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~-~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~   82 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAAS-MRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ   82 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCC-HHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC
Confidence            4567888899999999999998753      256799999865322 123457899999999999999999999999989


Q ss_pred             EEEEEEEecCCCCHhhhh
Q 040888          477 HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L  494 (495)
                      ..++|+||+++|+|.+++
T Consensus        83 ~~~lv~e~~~~~~L~~~~  100 (277)
T cd05062          83 PTLVIMELMTRGDLKSYL  100 (277)
T ss_pred             CeEEEEecCCCCCHHHHH
Confidence            999999999999999876

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.07  E-value=4.5e-10  Score=112.07  Aligned_cols=90  Identities=26%  Similarity=0.393  Sum_probs=76.3

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccc-ccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHF-QRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+++.+ .++.+|+|.+..... .....+.|.+|+.++..++|+||+++.+++...+..++||
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            36777899999999999999985 478899999865322 1122445889999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        81 ey~~~g~L~~~l   92 (332)
T cd05623          81 DYYVGGDLLTLL   92 (332)
T ss_pred             eccCCCcHHHHH
Confidence            999999999886

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.06  E-value=4.4e-10  Score=111.08  Aligned_cols=82  Identities=18%  Similarity=0.314  Sum_probs=70.5

Q ss_pred             eccCCceEEEEEEcC-CCCEEEEEEecCccc-ccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCCCH
Q 040888          413 LGEGTIGRVYRAKYP-DGKVLAVKKIDSSHF-QRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSL  490 (495)
Q Consensus       413 iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~GsL  490 (495)
                      ||+|+||.||+|... +++.||+|++..... .......+.+|++++.+++||||+++++++...+..++|+||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            699999999999985 588999999875422 122345788999999999999999999999999999999999999999


Q ss_pred             hhhh
Q 040888          491 HEFL  494 (495)
Q Consensus       491 ~~~L  494 (495)
                      .+++
T Consensus        81 ~~~l   84 (312)
T cd05585          81 FHHL   84 (312)
T ss_pred             HHHH
Confidence            8876

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.06  E-value=4.6e-10  Score=109.15  Aligned_cols=89  Identities=22%  Similarity=0.479  Sum_probs=75.0

Q ss_pred             cCCcccceeccCCceEEEEEEc-----CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-----PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      .+|+..+.||+|+||.||+|..     .++..||+|.+..... ......|.+|++++++++||||+++++++...+..+
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~   83 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINN-PQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVC   83 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCC-HHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceE
Confidence            3466678999999999999984     2467899999875322 223467899999999999999999999999999999


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +||||+++|+|.+++
T Consensus        84 lv~e~~~~~~L~~~l   98 (283)
T cd05090          84 MLFEYLNQGDLHEFL   98 (283)
T ss_pred             EEEEcCCCCcHHHHH
Confidence            999999999998876

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.06  E-value=4.9e-10  Score=107.27  Aligned_cols=86  Identities=26%  Similarity=0.480  Sum_probs=75.2

Q ss_pred             CCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEec
Q 040888          406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYY  485 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~  485 (495)
                      +|...+.||+|+||.||++..+++..+|+|.+.....   ....|.+|++++.+++|+||+++++++...+..++|+||+
T Consensus         5 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd05059           5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAM---SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYM   81 (256)
T ss_pred             HcchhhhhccCCCceEEEeEecCCccEEEEEeccCCC---CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecC
Confidence            4566788999999999999987777899999865322   2457889999999999999999999999999999999999


Q ss_pred             CCCCHhhhh
Q 040888          486 RNGSLHEFL  494 (495)
Q Consensus       486 ~~GsL~~~L  494 (495)
                      ++|+|.+++
T Consensus        82 ~~~~L~~~l   90 (256)
T cd05059          82 ANGCLLNYL   90 (256)
T ss_pred             CCCCHHHHH
Confidence            999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.06  E-value=8.3e-10  Score=106.18  Aligned_cols=90  Identities=21%  Similarity=0.386  Sum_probs=76.4

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccc-ccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHF-QRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|+. .+++.||||.+..... .......|.+|++++++++||||+++++++...+..++|+
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            4677889999999999999997 4689999998864322 1222457899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        82 e~~~~~~L~~~~   93 (267)
T cd08228          82 ELADAGDLSQMI   93 (267)
T ss_pred             EecCCCcHHHHH
Confidence            999999998765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.06  E-value=1.8e-11  Score=113.65  Aligned_cols=132  Identities=30%  Similarity=0.449  Sum_probs=104.0

Q ss_pred             ccCCCCCCcEEECcCCCCCCCCCCC--CCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCC
Q 040888           88 QLTNLKSVSYLDVSNNNLKDSIPYQ--LPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKL  165 (495)
Q Consensus        88 ~~~~l~~L~~L~Ls~N~l~g~~p~~--~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L  165 (495)
                      ....-+.|++||||+|.++ .|..+  +.|.++.|+||+|.+. .+. .+..+++|+.||||+|.++ .+..+=..+.++
T Consensus       279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI  354 (490)
T ss_pred             ecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence            3444567899999999987 33333  3389999999999998 333 3888999999999999997 344455567889


Q ss_pred             cEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc--cccCCcc-CcEEEeecCCCcccC
Q 040888          166 ETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI--NVLGKLP-LDELNVENNKFSGWV  225 (495)
Q Consensus       166 ~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~--~~~~~~~-L~~l~l~~N~l~g~~  225 (495)
                      +.|.|+.|.+..  -..+..+.+|..||+++|++...-  ..++.+| |+.+.|.+|++.+.+
T Consensus       355 KtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  355 KTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             eeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            999999999863  234678889999999999997544  6788898 999999999998754

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.06  E-value=2.9e-10  Score=105.70  Aligned_cols=91  Identities=21%  Similarity=0.399  Sum_probs=78.7

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|+....+|.|+||+|...+.+ +|..+|+|++.+...-+ ...+....|..+|+.+.||.++++.+.|.+....++||
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvm  123 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVM  123 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEE
Confidence            46777899999999999999884 58899999998764321 12456778999999999999999999999999999999


Q ss_pred             EecCCCCHhhhhC
Q 040888          483 DYYRNGSLHEFLH  495 (495)
Q Consensus       483 ey~~~GsL~~~L~  495 (495)
                      ||+++|.|+.+||
T Consensus       124 eyv~GGElFS~Lr  136 (355)
T KOG0616|consen  124 EYVPGGELFSYLR  136 (355)
T ss_pred             eccCCccHHHHHH
Confidence            9999999999985

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=1.4e-10  Score=103.14  Aligned_cols=109  Identities=24%  Similarity=0.315  Sum_probs=25.8

Q ss_pred             CCCCCCcEEECcCCCCCCCCCCC-CCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEE
Q 040888           90 TNLKSVSYLDVSNNNLKDSIPYQ-LPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETL  168 (495)
Q Consensus        90 ~~l~~L~~L~Ls~N~l~g~~p~~-~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L  168 (495)
                      .+...++.|+|++|.++-.-... ...+|+.|||++|.++. ++ .+..++.|+.|++++|+|+..-+.....+++|+.|
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccccccccccchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            33444555555555554211111 01355555555555552 22 34455666666666666653222112345556666


Q ss_pred             EccCCcCCCc-CcccccCCCCCCEEeccCCccc
Q 040888          169 DLSKNQLTGE-LPRSFASLSSLKKLYLQNNQFT  200 (495)
Q Consensus       169 ~ls~N~l~g~-~p~~~~~l~~L~~L~l~~N~l~  200 (495)
                      +|++|++... .-..+..+++|+.|+|.+|.++
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            6666665431 1123445555666666666554

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.06  E-value=8.8e-10  Score=106.82  Aligned_cols=87  Identities=22%  Similarity=0.366  Sum_probs=74.7

Q ss_pred             CcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEec
Q 040888          407 FATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYY  485 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~  485 (495)
                      |+..+.||+|+||.||+|.. .++..||+|.+...... ...+.|.+|++++.+++||||+++++++..++..++||||+
T Consensus         6 ~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06641           6 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAE-DEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYL   84 (277)
T ss_pred             hhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccch-HHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeC
Confidence            45568899999999999987 46889999998644321 23467899999999999999999999999999999999999


Q ss_pred             CCCCHhhhh
Q 040888          486 RNGSLHEFL  494 (495)
Q Consensus       486 ~~GsL~~~L  494 (495)
                      ++|+|.+++
T Consensus        85 ~~~~l~~~i   93 (277)
T cd06641          85 GGGSALDLL   93 (277)
T ss_pred             CCCcHHHHH
Confidence            999998876

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.05  E-value=7e-10  Score=110.50  Aligned_cols=84  Identities=21%  Similarity=0.314  Sum_probs=71.8

Q ss_pred             ceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCC
Q 040888          411 RLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNG  488 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~G  488 (495)
                      +.||+|+||.||++... +++.||||++...... ......+.+|++++.+++||||+++.+++...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            46899999999999874 6899999999754321 123457889999999999999999999999999999999999999


Q ss_pred             CHhhhh
Q 040888          489 SLHEFL  494 (495)
Q Consensus       489 sL~~~L  494 (495)
                      +|.+++
T Consensus        81 ~L~~~l   86 (328)
T cd05593          81 ELFFHL   86 (328)
T ss_pred             CHHHHH
Confidence            998765

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.05  E-value=5.7e-10  Score=106.43  Aligned_cols=83  Identities=22%  Similarity=0.446  Sum_probs=71.6

Q ss_pred             ceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCCC
Q 040888          411 RLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGS  489 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~Gs  489 (495)
                      +.||+|+||.||+|... +++.||+|.+..... ......|.+|++++++++||||++++++|......++|+||+++|+
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLP-PDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGD   79 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCC-HHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCc
Confidence            36899999999999984 688999998764321 2234679999999999999999999999999999999999999999


Q ss_pred             Hhhhh
Q 040888          490 LHEFL  494 (495)
Q Consensus       490 L~~~L  494 (495)
                      |.+++
T Consensus        80 L~~~~   84 (252)
T cd05084          80 FLTFL   84 (252)
T ss_pred             HHHHH
Confidence            99886

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.05  E-value=4e-10  Score=109.84  Aligned_cols=90  Identities=29%  Similarity=0.517  Sum_probs=76.9

Q ss_pred             ccCCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGH  477 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  477 (495)
                      .++|...+.||+|+||.||++..+      ++..||+|.+..... ....++|.+|++++++++||||++++++|..++.
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~   82 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS-ADMQADFQREAALMAEFDHPNIVKLLGVCAVGKP   82 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcC-HHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCc
Confidence            456888899999999999999863      467899999875432 2234679999999999999999999999999889


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++|+||+++|+|.+++
T Consensus        83 ~~lv~e~~~~~~L~~~l   99 (288)
T cd05050          83 MCLLFEYMAYGDLNEFL   99 (288)
T ss_pred             cEEEEecCCCCCHHHHH
Confidence            99999999999999886

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.05  E-value=4.4e-10  Score=109.32  Aligned_cols=97  Identities=19%  Similarity=0.368  Sum_probs=79.9

Q ss_pred             ccHHHHHHhccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEE
Q 040888          395 FSMADLLTATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFC  472 (495)
Q Consensus       395 ~~~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~  472 (495)
                      +.++.+..++++|...+.||+|+||.||++.. .+++.+|+|.+....   ....++.+|+.++.++ +||||++++++|
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~---~~~~~~~~e~~~l~~l~~h~~i~~~~~~~   84 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH---DIDEEIEAEYNILKALSDHPNVVKFYGMY   84 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc---chHHHHHHHHHHHHHHhcCCCeeeeeeee
Confidence            34566677888999999999999999999987 458899999886432   1245688899999999 699999999998


Q ss_pred             Ee-----CCEEEEEEEecCCCCHhhhh
Q 040888          473 SE-----QGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       473 ~~-----~~~~~lv~ey~~~GsL~~~L  494 (495)
                      ..     ++..++||||+++|+|.+++
T Consensus        85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l  111 (286)
T cd06638          85 YKKDVKNGDQLWLVLELCNGGSVTDLV  111 (286)
T ss_pred             eecccCCCCeEEEEEeecCCCCHHHHH
Confidence            53     35689999999999998765

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.05  E-value=3.8e-10  Score=109.40  Aligned_cols=89  Identities=26%  Similarity=0.567  Sum_probs=75.8

Q ss_pred             cCCcccceeccCCceEEEEEEcCC------CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPD------GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~------g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  478 (495)
                      ++|...+.||+|+||.||+|...+      +..||||.+..... ....+.|.+|++++.+++|+||+++++++...+..
T Consensus         5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   83 (280)
T cd05049           5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETAS-NDARKDFEREAELLTNFQHENIVKFYGVCTEGDPP   83 (280)
T ss_pred             HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCC-HHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCe
Confidence            346667899999999999998632      47899999875432 22356899999999999999999999999999999


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++||||+++|+|.+++
T Consensus        84 ~lv~e~~~~~~L~~~i   99 (280)
T cd05049          84 IMVFEYMEHGDLNKFL   99 (280)
T ss_pred             EEEEecCCCCCHHHHH
Confidence            9999999999999886

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.04  E-value=8e-10  Score=105.60  Aligned_cols=89  Identities=26%  Similarity=0.447  Sum_probs=76.3

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|+..+.||+|+||.+|++.. .+|+.||+|++..........+++.+|++++++++||||+++.+++...+..++|+||
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDY   80 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEec
Confidence            366778999999999999987 4688999999875433223356789999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        81 ~~~~~l~~~~   90 (256)
T cd08218          81 CEGGDLYKKI   90 (256)
T ss_pred             CCCCcHHHHH
Confidence            9999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.04  E-value=2.1e-10  Score=116.01  Aligned_cols=88  Identities=31%  Similarity=0.557  Sum_probs=73.6

Q ss_pred             CCcccceeccCCceEEEEEEcCC---C--CEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYPD---G--KVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~~---g--~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~l  480 (495)
                      .....++||+|.||.||+|++.+   |  .-||||..+.+... ...+.|..|.-+|+.++|||||+|+|.|.+. ..++
T Consensus       390 ~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~-d~tekflqEa~iMrnfdHphIikLIGv~~e~-P~Wi  467 (974)
T KOG4257|consen  390 LITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTP-DDTEKFLQEASIMRNFDHPHIIKLIGVCVEQ-PMWI  467 (974)
T ss_pred             hccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCCh-hhHHHHHHHHHHHHhCCCcchhheeeeeecc-ceeE
Confidence            34456889999999999999832   3  36899998765432 3367899999999999999999999999864 5799


Q ss_pred             EEEecCCCCHhhhhC
Q 040888          481 IYDYYRNGSLHEFLH  495 (495)
Q Consensus       481 v~ey~~~GsL~~~L~  495 (495)
                      |||.++-|.|..||+
T Consensus       468 vmEL~~~GELr~yLq  482 (974)
T KOG4257|consen  468 VMELAPLGELREYLQ  482 (974)
T ss_pred             EEecccchhHHHHHH
Confidence            999999999999974

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.04  E-value=7.4e-10  Score=106.20  Aligned_cols=86  Identities=24%  Similarity=0.457  Sum_probs=74.3

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      ++|...+.||+|+||.||+|..++++.||+|.+.....   ..++|.+|++++++++|+|++++++++. .+..++++||
T Consensus         6 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~   81 (260)
T cd05067           6 ETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSM---SPEAFLAEANLMKQLQHPRLVRLYAVVT-QEPIYIITEY   81 (260)
T ss_pred             HHceeeeeeccCccceEEeeecCCCceEEEEEecCCCC---cHHHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcEEEEEc
Confidence            45677789999999999999998899999999875432   2467999999999999999999999874 4568999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        82 ~~~~~L~~~~   91 (260)
T cd05067          82 MENGSLVDFL   91 (260)
T ss_pred             CCCCCHHHHH
Confidence            9999998875

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.04  E-value=9.2e-10  Score=105.10  Aligned_cols=88  Identities=26%  Similarity=0.488  Sum_probs=75.3

Q ss_pred             CcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc---cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ---RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~---~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      |...+.||+|+||.||+|+.. ++..|++|.+......   ....+.+.+|++++++++|+||+++.+++...+..++|+
T Consensus         2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (258)
T cd06632           2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFL   81 (258)
T ss_pred             ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEE
Confidence            556788999999999999985 7899999998653221   123467899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++++|.+++
T Consensus        82 e~~~~~~L~~~~   93 (258)
T cd06632          82 ELVPGGSLAKLL   93 (258)
T ss_pred             EecCCCcHHHHH
Confidence            999999998876

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.04  E-value=1.2e-10  Score=111.28  Aligned_cols=81  Identities=27%  Similarity=0.439  Sum_probs=64.9

Q ss_pred             CcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCE-----EEE
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGH-----NIL  480 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~-----~~l  480 (495)
                      |...+++|+|+||.||+|++. .+..||||+...+...      --+|.++|++++|||||+|.-++....+     ..+
T Consensus        26 ~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~------knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnl   99 (364)
T KOG0658|consen   26 YEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRY------KNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNL   99 (364)
T ss_pred             EEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCc------CcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHH
Confidence            445689999999999999984 4789999998765321      2368999999999999999999876432     248


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      |+||||. +|.+++
T Consensus       100 VleymP~-tL~~~~  112 (364)
T KOG0658|consen  100 VLEYMPE-TLYRVI  112 (364)
T ss_pred             HHHhchH-HHHHHH
Confidence            9999997 787765

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.04  E-value=3.7e-10  Score=113.23  Aligned_cols=90  Identities=23%  Similarity=0.496  Sum_probs=73.5

Q ss_pred             cCCcccceeccCCceEEEEEEc------CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeC-C
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQ-G  476 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~-~  476 (495)
                      ++|...+.||+|+||.||+|..      .+++.||||.++.... ....+.+.+|++++.++ +||||++++++|... .
T Consensus         7 ~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~   85 (343)
T cd05103           7 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT-HSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG   85 (343)
T ss_pred             hHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCC-hHHHHHHHHHHHHHHhccCCccHhhhcceeecCCC
Confidence            4677789999999999999973      3477999999975432 12245788999999999 689999999998754 4


Q ss_pred             EEEEEEEecCCCCHhhhhC
Q 040888          477 HNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L~  495 (495)
                      ..++|+||+++|+|.++++
T Consensus        86 ~~~lv~ey~~~g~L~~~i~  104 (343)
T cd05103          86 PLMVIVEFCKFGNLSNYLR  104 (343)
T ss_pred             ceEEEEeccCCCcHHHHHH
Confidence            6789999999999998863

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.03  E-value=4.9e-10  Score=109.73  Aligned_cols=89  Identities=27%  Similarity=0.484  Sum_probs=74.2

Q ss_pred             cCCcccceeccCCceEEEEEEcCC---------------CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPD---------------GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV  469 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~---------------g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~  469 (495)
                      ++|...+.||+|+||.||++...+               ...||+|.++.... ....+.|.+|++++.+++|+|+++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~ei~~l~~l~h~~i~~~~   83 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVT-KTARNDFLKEIKIMSRLKNPNIIRLL   83 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCC-HHHHHHHHHHHHHHHhCCCCCcCeEE
Confidence            356777899999999999987632               23589999875422 22346799999999999999999999


Q ss_pred             EEEEeCCEEEEEEEecCCCCHhhhh
Q 040888          470 GFCSEQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       470 g~~~~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      +++...+..++||||+++|+|.+++
T Consensus        84 ~~~~~~~~~~lv~e~~~~~~L~~~l  108 (295)
T cd05097          84 GVCVSDDPLCMITEYMENGDLNQFL  108 (295)
T ss_pred             EEEcCCCccEEEEecCCCCcHHHHH
Confidence            9999999999999999999998876

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.03  E-value=7.3e-10  Score=110.10  Aligned_cols=84  Identities=23%  Similarity=0.446  Sum_probs=71.0

Q ss_pred             ceeccCCceEEEEEEc----CCCCEEEEEEecCcccc--cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          411 RLLGEGTIGRVYRAKY----PDGKVLAVKKIDSSHFQ--RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~----~~g~~vavK~l~~~~~~--~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +.||+|+||.||+++.    ..++.||||.+......  ......+.+|++++.+++||||+++++++..++..++||||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            5799999999999985    35789999999754221  12235678999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        82 ~~~~~L~~~~   91 (323)
T cd05584          82 LSGGELFMHL   91 (323)
T ss_pred             CCCchHHHHH
Confidence            9999998875

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.03  E-value=9e-10  Score=107.08  Aligned_cols=88  Identities=28%  Similarity=0.522  Sum_probs=73.0

Q ss_pred             cCCcccceeccCCceEEEEEEcC-----CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--CE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ--GH  477 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-----~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~  477 (495)
                      .+|...+.||+|+||.||++.++     ++..||+|++.....  ...+.|.+|++++.+++||||+++++++...  ..
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   81 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTA--EHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN   81 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCH--HHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCc
Confidence            35667789999999999999852     578999999865432  2356789999999999999999999988643  46


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++|+||+++|+|.+++
T Consensus        82 ~~lv~e~~~~~~L~~~l   98 (284)
T cd05081          82 LRLVMEYLPYGSLRDYL   98 (284)
T ss_pred             eEEEEEecCCCCHHHHH
Confidence            78999999999999886

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.03  E-value=1e-09  Score=107.13  Aligned_cols=88  Identities=22%  Similarity=0.396  Sum_probs=74.3

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||+|... ++..||+|.++..... .....+.+|++++++++||||+++++++...+..++|||
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e   83 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEE-GAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFE   83 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccC-CcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEe
Confidence            45777899999999999999874 6889999998754321 224567899999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |++ |+|.+++
T Consensus        84 ~~~-~~l~~~l   93 (288)
T cd07871          84 YLD-SDLKQYL   93 (288)
T ss_pred             CCC-cCHHHHH
Confidence            997 4888765

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.03  E-value=1.5e-09  Score=105.36  Aligned_cols=87  Identities=20%  Similarity=0.253  Sum_probs=74.5

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|+..+.||+|+||.||+|+. .+++.||+|.+..... ....++|.+|++++.+++||||++++++|...+..++|+||
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   80 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDIT-VELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEF   80 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCC-hHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEec
Confidence            566778999999999999987 5688999999865422 22346799999999999999999999999999999999999


Q ss_pred             cCCCCHhhh
Q 040888          485 YRNGSLHEF  493 (495)
Q Consensus       485 ~~~GsL~~~  493 (495)
                      +++|+|..+
T Consensus        81 ~~~~~l~~~   89 (279)
T cd06619          81 MDGGSLDVY   89 (279)
T ss_pred             CCCCChHHh
Confidence            999998754

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.03  E-value=1.1e-09  Score=104.38  Aligned_cols=89  Identities=21%  Similarity=0.380  Sum_probs=77.0

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|...+.||+|+||.||++.. .+++.+|+|++..........+.+.+|++++++++|||++++++.+..++..++|+||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEY   80 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEec
Confidence            366778999999999999987 4688999999876543333456799999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        81 ~~~~~L~~~~   90 (256)
T cd08220          81 APGGTLAEYI   90 (256)
T ss_pred             CCCCCHHHHH
Confidence            9999998876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.03  E-value=9.9e-10  Score=106.04  Aligned_cols=89  Identities=26%  Similarity=0.494  Sum_probs=73.6

Q ss_pred             CcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc--------ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCE
Q 040888          407 FATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR--------ANSESFSEIVQNISRIRHTNIAELVGFCSEQGH  477 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~--------~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  477 (495)
                      |...+.||+|+||.||+|.. .+|+.||+|.++......        ...+.+.+|++++.+++|+|++++++++...+.
T Consensus         3 ~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   82 (272)
T cd06629           3 WVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEY   82 (272)
T ss_pred             eeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCc
Confidence            45578999999999999987 468899999886421110        113468889999999999999999999999999


Q ss_pred             EEEEEEecCCCCHhhhhC
Q 040888          478 NILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L~  495 (495)
                      .++|+||+++|+|.++++
T Consensus        83 ~~lv~e~~~~~~L~~~l~  100 (272)
T cd06629          83 LSIFLEYVPGGSIGSCLR  100 (272)
T ss_pred             eEEEEecCCCCcHHHHHh
Confidence            999999999999988763

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.02  E-value=9.8e-10  Score=105.04  Aligned_cols=86  Identities=24%  Similarity=0.499  Sum_probs=75.8

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      ++|...+.||+|+||.||+|... |+.||+|.+.....   ..+++.+|+.++.+++|+||+++++++......++|+||
T Consensus         6 ~~~~~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   81 (256)
T cd05039           6 KELKLGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDST---AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEY   81 (256)
T ss_pred             hhccceeeeecCCCceEEEEEec-CcEEEEEEeccchh---HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEe
Confidence            45677899999999999999874 78899999976432   356899999999999999999999999988899999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        82 ~~~~~L~~~~   91 (256)
T cd05039          82 MAKGSLVDYL   91 (256)
T ss_pred             cCCCcHHHHH
Confidence            9999999876

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.02  E-value=6.6e-10  Score=106.13  Aligned_cols=89  Identities=24%  Similarity=0.461  Sum_probs=76.4

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|...+.||+|+||.||++..+ +|..+|+|.+..........+.+.+|++++++++|+|++++++++......++|+||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   80 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEY   80 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEec
Confidence            3666789999999999999985 588999999876433223356788999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++++|.+++
T Consensus        81 ~~~~~L~~~~   90 (257)
T cd08225          81 CDGGDLMKRI   90 (257)
T ss_pred             CCCCcHHHHH
Confidence            9999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.02  E-value=9.5e-10  Score=106.90  Aligned_cols=82  Identities=20%  Similarity=0.301  Sum_probs=69.5

Q ss_pred             eccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCCCH
Q 040888          413 LGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSL  490 (495)
Q Consensus       413 iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~GsL  490 (495)
                      ||+|+||+||++... +++.||+|++....... ...+.+..|++++++++|+||+++.+++..+...++|||||++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            699999999999874 68899999987543221 1235678899999999999999999999999999999999999999


Q ss_pred             hhhh
Q 040888          491 HEFL  494 (495)
Q Consensus       491 ~~~L  494 (495)
                      .+++
T Consensus        81 ~~~~   84 (280)
T cd05608          81 RYHI   84 (280)
T ss_pred             HHHH
Confidence            8664

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.01  E-value=1.3e-09  Score=106.24  Aligned_cols=88  Identities=18%  Similarity=0.309  Sum_probs=74.1

Q ss_pred             CcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          407 FATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      |...+.||+|+||+||++.. .+++.||+|.+....... ...+.+.+|++++.+++|+|++++.+++..++..++||||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence            45568899999999999987 468899999987543221 1234578899999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        82 ~~~~~L~~~~   91 (285)
T cd05632          82 MNGGDLKFHI   91 (285)
T ss_pred             ccCccHHHHH
Confidence            9999998765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.01  E-value=1.2e-09  Score=108.93  Aligned_cols=84  Identities=13%  Similarity=0.256  Sum_probs=70.9

Q ss_pred             ceeccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          411 RLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      ++||+|+||.||++... +++.||||.++...... ...+.+.+|..++.++ +||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            46899999999999984 58899999997643221 2245688899999888 799999999999999999999999999


Q ss_pred             CCHhhhh
Q 040888          488 GSLHEFL  494 (495)
Q Consensus       488 GsL~~~L  494 (495)
                      |+|.+++
T Consensus        81 g~L~~~~   87 (329)
T cd05588          81 GDLMFHM   87 (329)
T ss_pred             CCHHHHH
Confidence            9998765

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.01  E-value=1.5e-09  Score=106.81  Aligned_cols=89  Identities=21%  Similarity=0.376  Sum_probs=74.5

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .++|...+.||+|+||.||+|... +++.||||++...... .....+.+|++++++++||||+++++++..++..++||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~   82 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEE-GTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVF   82 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEecccccc-ccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEE
Confidence            356888899999999999999985 6889999998754321 22346788999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||++ |+|.+++
T Consensus        83 e~~~-~~l~~~~   93 (303)
T cd07869          83 EYVH-TDLCQYM   93 (303)
T ss_pred             ECCC-cCHHHHH
Confidence            9996 5776654

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.01  E-value=1.1e-09  Score=105.57  Aligned_cols=88  Identities=27%  Similarity=0.537  Sum_probs=72.0

Q ss_pred             CcccceeccCCceEEEEEEcCC----CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCE-----
Q 040888          407 FATGRLLGEGTIGRVYRAKYPD----GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGH-----  477 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~~----g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~-----  477 (495)
                      |...+.||+|+||.||+|....    +..||+|+++.........+.+.+|++.+++++|||++++++++...+.     
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            3457889999999999998742    3689999987643332334679999999999999999999999876554     


Q ss_pred             -EEEEEEecCCCCHhhhh
Q 040888          478 -NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 -~~lv~ey~~~GsL~~~L  494 (495)
                       .++|+||+++|+|.+++
T Consensus        81 ~~~~v~e~~~~~~l~~~l   98 (273)
T cd05035          81 KPMVILPFMKHGDLHSFL   98 (273)
T ss_pred             ccEEEEeccCCCCHHHHH
Confidence             68999999999998775

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.01  E-value=1.4e-09  Score=105.99  Aligned_cols=88  Identities=19%  Similarity=0.306  Sum_probs=74.4

Q ss_pred             CcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      |+..+.||+|+||.||++... +++.||||.+....... ...+.+..|+.++.+++|++++++.+.+..++..++||||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence            556788999999999999884 68899999987543221 1234578899999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        82 ~~g~~L~~~l   91 (285)
T cd05630          82 MNGGDLKFHI   91 (285)
T ss_pred             cCCCcHHHHH
Confidence            9999998875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.01  E-value=1.4e-09  Score=105.64  Aligned_cols=89  Identities=19%  Similarity=0.393  Sum_probs=75.3

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|+....||+|+||.||+|... +|+.||+|++..........+.+.+|++++.+++|+|++++++++......++||||
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~   81 (286)
T cd07847           2 KYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEY   81 (286)
T ss_pred             ceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEec
Confidence            5677789999999999999985 589999999865432222346788999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      ++++.|..++
T Consensus        82 ~~~~~l~~~~   91 (286)
T cd07847          82 CDHTVLNELE   91 (286)
T ss_pred             cCccHHHHHH
Confidence            9998887654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.01  E-value=8e-10  Score=106.20  Aligned_cols=86  Identities=24%  Similarity=0.501  Sum_probs=75.2

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|...+.||+|+||.||+|... .++.||+|.+....   ...+++.+|++++.+++|+||++++++|..++..++||||
T Consensus         7 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (263)
T cd05052           7 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT---MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF   83 (263)
T ss_pred             HeEEeeecCCcccceEEEEEEecCCceEEEEEecCCc---hHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEe
Confidence            4666789999999999999985 58899999987542   2246799999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        84 ~~~~~L~~~~   93 (263)
T cd05052          84 MTYGNLLDYL   93 (263)
T ss_pred             CCCCcHHHHH
Confidence            9999999875

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.01  E-value=1.2e-09  Score=104.26  Aligned_cols=86  Identities=23%  Similarity=0.542  Sum_probs=75.6

Q ss_pred             CCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEec
Q 040888          406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYY  485 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~  485 (495)
                      +|...+.||+|+||.||++...++..+|+|.+.....   ...+|.+|++++++++|||++++++++......++|+||+
T Consensus         5 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   81 (256)
T cd05112           5 ELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAM---SEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFM   81 (256)
T ss_pred             HeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCC---CHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcC
Confidence            4666789999999999999987788999999875432   2467999999999999999999999999999999999999


Q ss_pred             CCCCHhhhh
Q 040888          486 RNGSLHEFL  494 (495)
Q Consensus       486 ~~GsL~~~L  494 (495)
                      ++|+|.+++
T Consensus        82 ~~~~L~~~~   90 (256)
T cd05112          82 EHGCLSDYL   90 (256)
T ss_pred             CCCcHHHHH
Confidence            999998876

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.01  E-value=1.1e-09  Score=108.84  Aligned_cols=88  Identities=24%  Similarity=0.400  Sum_probs=70.4

Q ss_pred             CcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHH---HhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQN---ISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~---l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      |...+.||+|+||.||+|... +++.||||++...... ....+.+.+|+++   +++++||||+++++++...+..++|
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            445688999999999999874 6899999999754321 1223456666554   4677899999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+++|+|..++
T Consensus        81 ~E~~~~~~L~~~~   93 (324)
T cd05589          81 MEYAAGGDLMMHI   93 (324)
T ss_pred             EcCCCCCcHHHHh
Confidence            9999999998765

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.01  E-value=1.2e-09  Score=105.40  Aligned_cols=82  Identities=23%  Similarity=0.388  Sum_probs=68.7

Q ss_pred             eeccCCceEEEEEEcCC---CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCC
Q 040888          412 LLGEGTIGRVYRAKYPD---GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNG  488 (495)
Q Consensus       412 ~iG~G~~g~Vy~~~~~~---g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~G  488 (495)
                      .||+|+||.||+|...+   ...+|+|.+..... ......|.+|++.++.++|+||++++++|......++||||+++|
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASAT-PDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLG   80 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCC-hHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCC
Confidence            58999999999997633   45788888764322 223467899999999999999999999999999999999999999


Q ss_pred             CHhhhh
Q 040888          489 SLHEFL  494 (495)
Q Consensus       489 sL~~~L  494 (495)
                      +|.+++
T Consensus        81 ~L~~~l   86 (269)
T cd05042          81 DLKNYL   86 (269)
T ss_pred             cHHHHH
Confidence            999876

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.01  E-value=7.8e-10  Score=107.18  Aligned_cols=90  Identities=27%  Similarity=0.416  Sum_probs=76.2

Q ss_pred             ccCCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGH  477 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  477 (495)
                      +++|...+.||+|+||.||+|...      .+..||+|.+..... ......|.+|+.++++++|+||+++++++.+.+.
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCS-EQDESDFLMEALIMSKFNHQNIVRLIGVSFERLP   83 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC
Confidence            456788899999999999999884      356789998864322 2224579999999999999999999999999889


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++||||+++|+|.+++
T Consensus        84 ~~lv~e~~~g~~L~~~i  100 (277)
T cd05036          84 RFILLELMAGGDLKSFL  100 (277)
T ss_pred             cEEEEecCCCCCHHHHH
Confidence            99999999999999876

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.01  E-value=1.8e-09  Score=104.93  Aligned_cols=88  Identities=23%  Similarity=0.426  Sum_probs=74.3

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|...+.||+|++|.||+|+.. ++..||+|++..........+.+.+|+.++.+++||||+++++++..++..++|+||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEF   80 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEec
Confidence            4666789999999999999984 689999999875433223346788999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      ++ |+|.+++
T Consensus        81 ~~-~~l~~~~   89 (285)
T cd07861          81 LS-MDLKKYL   89 (285)
T ss_pred             CC-CCHHHHH
Confidence            97 6887765

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.01  E-value=1.4e-09  Score=108.26  Aligned_cols=84  Identities=21%  Similarity=0.301  Sum_probs=71.4

Q ss_pred             ceeccCCceEEEEEEc-CCCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCC
Q 040888          411 RLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNG  488 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~G  488 (495)
                      +.||+|+||.||++.. .+|..||+|.+...... ......+..|++++.+++||||+++.+++...+..++||||+++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            4689999999999987 46899999999754321 122456788999999999999999999999999999999999999


Q ss_pred             CHhhhh
Q 040888          489 SLHEFL  494 (495)
Q Consensus       489 sL~~~L  494 (495)
                      +|.+++
T Consensus        81 ~L~~~l   86 (325)
T cd05594          81 ELFFHL   86 (325)
T ss_pred             cHHHHH
Confidence            998765

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.00  E-value=1.9e-10  Score=117.78  Aligned_cols=85  Identities=25%  Similarity=0.442  Sum_probs=73.7

Q ss_pred             ccceeccCCceEEEEEEcC--CCC--EEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          409 TGRLLGEGTIGRVYRAKYP--DGK--VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       409 ~~~~iG~G~~g~Vy~~~~~--~g~--~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      ..++||+|.||.|++|.+.  .|+  .||||+++.+.... ...+|++|+..|.+++|+|+++|+|...+ ...++|+|.
T Consensus       114 l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~-~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~EL  191 (1039)
T KOG0199|consen  114 LYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNA-IMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVFEL  191 (1039)
T ss_pred             HHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccch-hHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHhhh
Confidence            4588999999999999984  455  67999998765432 46789999999999999999999999987 667899999


Q ss_pred             cCCCCHhhhhC
Q 040888          485 YRNGSLHEFLH  495 (495)
Q Consensus       485 ~~~GsL~~~L~  495 (495)
                      ++.|+|.+.||
T Consensus       192 aplGSLldrLr  202 (1039)
T KOG0199|consen  192 APLGSLLDRLR  202 (1039)
T ss_pred             cccchHHHHHh
Confidence            99999999875

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.00  E-value=8.1e-10  Score=107.02  Aligned_cols=87  Identities=32%  Similarity=0.587  Sum_probs=72.8

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC--EEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG--HNILIY  482 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~--~~~lv~  482 (495)
                      ++...+.||+|+||.||.+... +|...|||.+......  ..+.+.+|+++|.+++|||||+.+|.....+  ...+.|
T Consensus        18 ~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~--~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~m   95 (313)
T KOG0198|consen   18 NWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSP--TSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFM   95 (313)
T ss_pred             hhhhhccccCccceEEEEEEecCCCcceeeeeeecccch--hHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeee
Confidence            3455789999999999999985 4999999998765221  1567899999999999999999999865555  578999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        96 Ey~~~GsL~~~~  107 (313)
T KOG0198|consen   96 EYAPGGSLSDLI  107 (313)
T ss_pred             eccCCCcHHHHH
Confidence            999999999875

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.00  E-value=1.7e-09  Score=106.15  Aligned_cols=88  Identities=18%  Similarity=0.319  Sum_probs=76.6

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      .+|...+.||+|+||.||+|+. .+++.||+|.+.....  ...+.+.+|+.+++.++|+|+++++++|..++..++|||
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e   96 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQ--PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME   96 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCcc--chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeec
Confidence            4577789999999999999996 5689999999865432  224678899999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        97 ~~~~~~L~~~~  107 (297)
T cd06656          97 YLAGGSLTDVV  107 (297)
T ss_pred             ccCCCCHHHHH
Confidence            99999998875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.00  E-value=1.1e-09  Score=105.57  Aligned_cols=89  Identities=22%  Similarity=0.483  Sum_probs=75.3

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CC---CEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DG---KVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g---~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~l  480 (495)
                      ++|...+.||+|+||.||+|... ++   ..+|+|.+..... ....++|..|++++.+++|+|++++.+++...+..++
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (268)
T cd05063           5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYT-EKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMI   83 (268)
T ss_pred             HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCC-HHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEE
Confidence            46777899999999999999874 23   3799999865422 2235679999999999999999999999999999999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+++|+|.+++
T Consensus        84 v~e~~~~~~L~~~~   97 (268)
T cd05063          84 ITEYMENGALDKYL   97 (268)
T ss_pred             EEEcCCCCCHHHHH
Confidence            99999999998876

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.00  E-value=2.1e-09  Score=103.09  Aligned_cols=90  Identities=26%  Similarity=0.451  Sum_probs=76.7

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc---ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR---ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~---~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~l  480 (495)
                      ++|...+.||+|++|.||+|.. .++..+|+|.+.......   ...+.+.+|++++.+++||||+++++++..++..++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            4688889999999999999987 468999999986542211   123568899999999999999999999999999999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      |+||+++|+|.+++
T Consensus        82 v~e~~~~~~l~~~~   95 (263)
T cd06625          82 FMEYMPGGSVKDQL   95 (263)
T ss_pred             EEEECCCCcHHHHH
Confidence            99999999998875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.00  E-value=2.8e-10  Score=101.17  Aligned_cols=121  Identities=27%  Similarity=0.343  Sum_probs=52.3

Q ss_pred             CEeEEEcCCCCCccccccccC-CCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhc-cCCCCCcEEEcc
Q 040888           70 SVTEIKLSGLGLNGQLGYQLT-NLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSI-SQMSELKYLNLG  147 (495)
Q Consensus        70 ~v~~l~L~~n~l~g~~~~~~~-~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~-~~l~~L~~L~L~  147 (495)
                      ++++|+|.+|.++-.  +.++ .+++|+.|||++|.++..-.....+.|+.|+|++|+++. ++..+ ..+++|+.|+|+
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~   96 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLS   96 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-T
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECc
Confidence            678999999999853  3465 588999999999999854333333899999999999994 54444 468999999999


Q ss_pred             cCcCCCccc-hhhhCCCCCcEEEccCCcCCCcCcc----cccCCCCCCEEec
Q 040888          148 SNQLNGQLS-DMFQKNEKLETLDLSKNQLTGELPR----SFASLSSLKKLYL  194 (495)
Q Consensus       148 ~N~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~p~----~~~~l~~L~~L~l  194 (495)
                      +|+|...-. ..+..+++|+.|+|.+|.++.. +.    -+..+++|+.||-
T Consensus        97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             TS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred             CCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence            999975322 4577899999999999999843 32    3567889999873

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.00  E-value=1.2e-09  Score=106.69  Aligned_cols=97  Identities=23%  Similarity=0.413  Sum_probs=81.4

Q ss_pred             ccHHHHHHhccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEE
Q 040888          395 FSMADLLTATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFC  472 (495)
Q Consensus       395 ~~~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~  472 (495)
                      ++++++..++++|...+.||+|+||.||++.. .+++.+|+|.+....   .....+.+|+.++.++ +|||+++++++|
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~---~~~~~~~~e~~~l~~l~~h~ni~~~~~~~   88 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS---DVDEEIEAEYNILQSLPNHPNVVKFYGMF   88 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc---cHHHHHHHHHHHHHHhcCCCCeEEEEEEE
Confidence            45577778899999999999999999999987 468899999986532   1245678899999998 899999999999


Q ss_pred             EeCC-----EEEEEEEecCCCCHhhhh
Q 040888          473 SEQG-----HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       473 ~~~~-----~~~lv~ey~~~GsL~~~L  494 (495)
                      ...+     ..++|+||+++|+|.+++
T Consensus        89 ~~~~~~~~~~~~lv~ey~~~~sL~~~~  115 (291)
T cd06639          89 YKADKLVGGQLWLVLELCNGGSVTELV  115 (291)
T ss_pred             EeccccCCCeeEEEEEECCCCcHHHHH
Confidence            7643     578999999999998865

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.00  E-value=1.3e-09  Score=106.33  Aligned_cols=89  Identities=25%  Similarity=0.395  Sum_probs=76.5

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      +|...+.||+|+||.||++... +++.||+|.+...... ....+.+.+|++++++++||||+++++++...+..++|||
T Consensus         2 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   81 (290)
T cd05580           2 DFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVME   81 (290)
T ss_pred             ceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEEe
Confidence            5777899999999999999984 5899999998654321 1224678899999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        82 ~~~~~~L~~~~   92 (290)
T cd05580          82 YVPGGELFSHL   92 (290)
T ss_pred             cCCCCCHHHHH
Confidence            99999998876

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.00  E-value=1.1e-09  Score=105.40  Aligned_cols=86  Identities=23%  Similarity=0.471  Sum_probs=73.0

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      ++|...+.||+|+||.||+|...+...||+|++.....   ..++|.+|++++.+++|+||+++++++. .+..++||||
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~---~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~   81 (262)
T cd05071           6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEY   81 (262)
T ss_pred             HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCcc---CHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEEEc
Confidence            45677889999999999999987777899999975332   2467999999999999999999999875 4557899999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        82 ~~~~~L~~~~   91 (262)
T cd05071          82 MSKGSLLDFL   91 (262)
T ss_pred             CCCCcHHHHH
Confidence            9999999876

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.00  E-value=9e-10  Score=106.86  Aligned_cols=88  Identities=23%  Similarity=0.339  Sum_probs=76.3

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||++... ++..+|+|.+.....  ...+.|.+|++++++++|+|++++++++..++..++|||
T Consensus         5 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (280)
T cd06611           5 DIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESE--EELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIE   82 (280)
T ss_pred             hHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCH--HHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEee
Confidence            45677788999999999999984 588999999865422  234679999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        83 ~~~~~~L~~~~   93 (280)
T cd06611          83 FCDGGALDSIM   93 (280)
T ss_pred             ccCCCcHHHHH
Confidence            99999998875

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.00  E-value=9e-10  Score=121.01  Aligned_cols=93  Identities=14%  Similarity=0.289  Sum_probs=77.5

Q ss_pred             HhccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--CEE
Q 040888          402 TATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ--GHN  478 (495)
Q Consensus       402 ~~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~~  478 (495)
                      ...++|.....||+|+||.||++... .+..||+|.+............|..|+.++.+++|||||++++++...  ...
T Consensus        10 ~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~l   89 (1021)
T PTZ00266         10 SRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKL   89 (1021)
T ss_pred             cccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEE
Confidence            34567888999999999999999984 577899999875443333356789999999999999999999988653  568


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++||||+++|+|.++|
T Consensus        90 yIVMEY~~gGSL~~lL  105 (1021)
T PTZ00266         90 YILMEFCDAGDLSRNI  105 (1021)
T ss_pred             EEEEeCCCCCcHHHHH
Confidence            8999999999998876

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.00  E-value=9e-10  Score=109.02  Aligned_cols=89  Identities=19%  Similarity=0.440  Sum_probs=72.4

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCC----EEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGK----VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~----~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      .+|+..+.||+|+||.||+|++. ++.    .||+|.+..... ....++|.+|+.+++.++||||++++|+|... ..+
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~   84 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS-PKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQ   84 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCC-HHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-Cce
Confidence            35778899999999999999863 333    489999865322 22356799999999999999999999999865 467


Q ss_pred             EEEEecCCCCHhhhhC
Q 040888          480 LIYDYYRNGSLHEFLH  495 (495)
Q Consensus       480 lv~ey~~~GsL~~~L~  495 (495)
                      +|+||+++|+|.++++
T Consensus        85 ~v~e~~~~g~l~~~l~  100 (316)
T cd05108          85 LITQLMPFGCLLDYVR  100 (316)
T ss_pred             eeeecCCCCCHHHHHH
Confidence            9999999999998763

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.00  E-value=1.2e-09  Score=105.12  Aligned_cols=89  Identities=24%  Similarity=0.473  Sum_probs=75.8

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccc----cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQ----RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~l  480 (495)
                      +|+..+.||+|+||.||++.. .+++.||+|.+......    ....+.+.+|++++++++|+||+++++++...+..++
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            467789999999999999986 56889999998653211    1124678999999999999999999999999999999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      |+||+++|+|.+++
T Consensus        81 v~e~~~~~~L~~~l   94 (268)
T cd06630          81 FVEWMAGGSVSHLL   94 (268)
T ss_pred             EEeccCCCcHHHHH
Confidence            99999999998876

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.00  E-value=5.5e-10  Score=108.60  Aligned_cols=89  Identities=20%  Similarity=0.396  Sum_probs=75.9

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|...+.||+|+||.||+|... +++.||+|++..........+.+.+|++++++++||||+++++++..++..++|+||
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   81 (286)
T cd07846           2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEF   81 (286)
T ss_pred             ceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEec
Confidence            5677899999999999999985 588999999865433222356788999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++++|.++.
T Consensus        82 ~~~~~l~~~~   91 (286)
T cd07846          82 VDHTVLDDLE   91 (286)
T ss_pred             CCccHHHHHH
Confidence            9998887653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.00  E-value=1.1e-09  Score=107.81  Aligned_cols=90  Identities=29%  Similarity=0.500  Sum_probs=75.4

Q ss_pred             cCCcccceeccCCceEEEEEEc------CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGH  477 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~  477 (495)
                      ++|...+.||+|+||.||++..      ..+..||||+++.... ....+.+.+|+++++++ +||||++++++|...+.
T Consensus        35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~  113 (302)
T cd05055          35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAH-SSEREALMSELKIMSHLGNHENIVNLLGACTIGGP  113 (302)
T ss_pred             HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCC-hHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCc
Confidence            4678889999999999999974      2355899999875432 12246789999999999 79999999999999999


Q ss_pred             EEEEEEecCCCCHhhhhC
Q 040888          478 NILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L~  495 (495)
                      .++|+||+++|+|.++++
T Consensus       114 ~~lv~e~~~~~~L~~~i~  131 (302)
T cd05055         114 ILVITEYCCYGDLLNFLR  131 (302)
T ss_pred             eEEEEEcCCCCcHHHHHH
Confidence            999999999999998763

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.00  E-value=1.5e-09  Score=105.11  Aligned_cols=88  Identities=20%  Similarity=0.331  Sum_probs=75.3

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      .|+..+.||+|+||.||+|... ++..||+|.+..... ....+.+.+|++++++++|+||+++++++..+...++||||
T Consensus         5 ~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (277)
T cd06640           5 LFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEA-EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEY   83 (277)
T ss_pred             hhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEecccc-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEec
Confidence            3555688999999999999974 588999999865422 12356789999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        84 ~~~~~L~~~i   93 (277)
T cd06640          84 LGGGSALDLL   93 (277)
T ss_pred             CCCCcHHHHH
Confidence            9999998876

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.00  E-value=2.2e-09  Score=103.02  Aligned_cols=89  Identities=24%  Similarity=0.393  Sum_probs=77.4

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||+|.. .++..+|+|++....... ..+.+.+|++.+++++|+|++++++.+..++..++|+|
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e   79 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQT-SVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMP   79 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcch-HHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEe
Confidence            3677889999999999999996 468899999987543322 35679999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++++|.+++
T Consensus        80 ~~~~~~l~~~~   90 (267)
T cd06610          80 YLSGGSLLDIM   90 (267)
T ss_pred             ccCCCcHHHHH
Confidence            99999998876

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=98.99  E-value=1.2e-09  Score=114.42  Aligned_cols=86  Identities=14%  Similarity=0.181  Sum_probs=72.6

Q ss_pred             CcccceeccCCceEEEEEEcC-C-CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-D-GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~-g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      |...+.||+|+||.||+|... + +..||+|.+.....  .....+.+|++++++++|||||+++++|..++..++||||
T Consensus        69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~--~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~  146 (478)
T PTZ00267         69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDE--RQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEY  146 (478)
T ss_pred             EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCH--HHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEEC
Confidence            667799999999999999863 3 67888887754321  2245678899999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.++|
T Consensus       147 ~~gg~L~~~l  156 (478)
T PTZ00267        147 GSGGDLNKQI  156 (478)
T ss_pred             CCCCCHHHHH
Confidence            9999998765

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=98.99  E-value=1.4e-09  Score=106.26  Aligned_cols=88  Identities=30%  Similarity=0.515  Sum_probs=73.5

Q ss_pred             CCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      +|...+.||+|+||.||+|+..      ....+|+|.+..... ....+.+.+|++++++++||||++++++|..++..+
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   79 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENAS-SSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLL   79 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCC-HHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcE
Confidence            3566789999999999999852      235789998865432 122467899999999999999999999999999999


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +|+||+++|+|.+++
T Consensus        80 lv~e~~~~~~L~~~l   94 (290)
T cd05045          80 LIVEYAKYGSLRSFL   94 (290)
T ss_pred             EEEEecCCCCHHHHH
Confidence            999999999999875

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=98.99  E-value=9.9e-10  Score=105.88  Aligned_cols=88  Identities=24%  Similarity=0.438  Sum_probs=74.3

Q ss_pred             CCcccceeccCCceEEEEEEcCC-C---CEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYPD-G---KVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~~-g---~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      +|...+.||+|+||.||+|.... +   ..||||.+..... ....++|..|++++++++||||+++.+++..++..++|
T Consensus         5 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv   83 (269)
T cd05065           5 CVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYT-EKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMII   83 (269)
T ss_pred             HeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCC-HHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEE
Confidence            45667899999999999998743 3   3699999875422 22356899999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      +||+++|+|.+++
T Consensus        84 ~e~~~~~~L~~~l   96 (269)
T cd05065          84 TEFMENGALDSFL   96 (269)
T ss_pred             EecCCCCcHHHHH
Confidence            9999999998876

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=98.99  E-value=2e-09  Score=103.26  Aligned_cols=89  Identities=24%  Similarity=0.472  Sum_probs=77.2

Q ss_pred             CcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEec
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYY  485 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~  485 (495)
                      |+..+.||+|+||.||+|... +++.||+|.+..........+.+.+|++++++++|+||+++++++...+..++|+||+
T Consensus         2 y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (264)
T cd06626           2 WQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYC   81 (264)
T ss_pred             ceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEecC
Confidence            566789999999999999874 6889999998765432234678999999999999999999999999999999999999


Q ss_pred             CCCCHhhhhC
Q 040888          486 RNGSLHEFLH  495 (495)
Q Consensus       486 ~~GsL~~~L~  495 (495)
                      ++++|.++++
T Consensus        82 ~~~~L~~~~~   91 (264)
T cd06626          82 SGGTLEELLE   91 (264)
T ss_pred             CCCcHHHHHh
Confidence            9999998763

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=98.99  E-value=1.2e-09  Score=105.62  Aligned_cols=90  Identities=26%  Similarity=0.489  Sum_probs=75.5

Q ss_pred             cCCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  478 (495)
                      ++|.....||+|+||.||+|...      +...|++|.+..... ....+.|.+|++++.+++|+||+++++++...+..
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   83 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKD-ENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPH   83 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccc-hHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcc
Confidence            46777889999999999999863      246799998865322 11346799999999999999999999999988899


Q ss_pred             EEEEEecCCCCHhhhhC
Q 040888          479 ILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L~  495 (495)
                      ++||||+++|+|.++++
T Consensus        84 ~lv~e~~~~~~L~~~i~  100 (275)
T cd05046          84 YMILEYTDLGDLKQFLR  100 (275)
T ss_pred             eEEEEecCCCcHHHHHH
Confidence            99999999999998863

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=98.99  E-value=1.2e-09  Score=106.16  Aligned_cols=89  Identities=27%  Similarity=0.565  Sum_probs=74.8

Q ss_pred             cCCcccceeccCCceEEEEEEcCC------CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPD------GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~------g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  478 (495)
                      ++|+..+.||+|+||.||+|....      ...||+|.+..... ....++|.+|++++.+++||||+++++++...+..
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~-~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~   83 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAE-PKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPT   83 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCC-HHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCce
Confidence            356677899999999999998632      25799999875432 22346799999999999999999999999998999


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      +++|||+++|+|.+++
T Consensus        84 ~~~~e~~~~~~L~~~l   99 (283)
T cd05048          84 CMLFEYLAHGDLHEFL   99 (283)
T ss_pred             EEEEecCCCCcHHHHH
Confidence            9999999999999886

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=98.99  E-value=6.2e-10  Score=106.54  Aligned_cols=89  Identities=18%  Similarity=0.287  Sum_probs=76.9

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      +|...+.||+|+||.||+|... ++..||+|.+....... ...+.+.+|++++++++||||+++++++...+..++|+|
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            4667899999999999999985 58899999997543221 235689999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++++|.+++
T Consensus        81 ~~~~~~L~~~l   91 (258)
T cd05578          81 LLLGGDLRYHL   91 (258)
T ss_pred             CCCCCCHHHHH
Confidence            99999998876

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=98.99  E-value=1.4e-09  Score=104.26  Aligned_cols=86  Identities=23%  Similarity=0.448  Sum_probs=74.5

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      ++|...+.||+|+||.||++...++..+|+|.+.....   ..+.|.+|++++++++|+|++++.+++.. ...+++|||
T Consensus         6 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~e~   81 (260)
T cd05073           6 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSM---SVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEF   81 (260)
T ss_pred             cceeEEeEecCccceEEEEEEecCCccEEEEecCCChh---HHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEEEe
Confidence            45777899999999999999987788899998875422   24678999999999999999999999887 678999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        82 ~~~~~L~~~~   91 (260)
T cd05073          82 MAKGSLLDFL   91 (260)
T ss_pred             CCCCcHHHHH
Confidence            9999998876

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=98.99  E-value=1.6e-09  Score=103.96  Aligned_cols=86  Identities=27%  Similarity=0.493  Sum_probs=73.7

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      ++|+..+.||+|+||.||+|..+++..+|+|.+.....   ..+.|.+|+.++++++|+|++++++++. ....+++|||
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~---~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~   81 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM---SPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVTEY   81 (260)
T ss_pred             HHhhhhheeccccCceEEEEEecCCceeEEEEecCCCC---CHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEEEe
Confidence            35666789999999999999988888899999876432   2467999999999999999999999885 4567899999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        82 ~~~~~L~~~~   91 (260)
T cd05070          82 MSKGSLLDFL   91 (260)
T ss_pred             cCCCcHHHHH
Confidence            9999999876

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.99  E-value=5.6e-10  Score=111.22  Aligned_cols=90  Identities=23%  Similarity=0.425  Sum_probs=78.0

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCE-EEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGH-NILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~-~~lv~  482 (495)
                      ++|...+.+|+|+||.++...++ ++..+++|.+.........++.-..|+.++++++|||||...+.+..++. .++||
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm   83 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVM   83 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEE
Confidence            45666789999999999988874 57899999998776554445678899999999999999999999999888 89999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      +|++||++.+.|
T Consensus        84 ~Y~eGg~l~~~i   95 (426)
T KOG0589|consen   84 EYCEGGDLAQLI   95 (426)
T ss_pred             eecCCCCHHHHH
Confidence            999999998865

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=98.99  E-value=1.2e-09  Score=106.98  Aligned_cols=89  Identities=26%  Similarity=0.447  Sum_probs=74.3

Q ss_pred             cCCcccceeccCCceEEEEEEcC-----------------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcce
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-----------------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE  467 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-----------------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~  467 (495)
                      ++|...+.||+|+||.||++...                 ++..||+|.+..... ....++|.+|++++.+++|+||++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~-~~~~~~~~~E~~~l~~l~~~~i~~   83 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDAN-KNARNDFLKEIKIMSRLKDPNIIR   83 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCC-HHHHHHHHHHHHHHHhCCCCCcce
Confidence            45777889999999999998532                 244789999875422 223567999999999999999999


Q ss_pred             EEEEEEeCCEEEEEEEecCCCCHhhhh
Q 040888          468 LVGFCSEQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       468 l~g~~~~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      +++++...+..++||||+++|+|.+++
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l  110 (296)
T cd05095          84 LLAVCITSDPLCMITEYMENGDLNQFL  110 (296)
T ss_pred             EEEEEecCCccEEEEEeCCCCcHHHHH
Confidence            999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=98.99  E-value=1.6e-11  Score=110.86  Aligned_cols=88  Identities=23%  Similarity=0.375  Sum_probs=77.0

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      +.|+..+.||+|.|+.||++.. ++|+.+|+|.+..........++..+|+++.+.++|||||+|...+.+..+.++|+|
T Consensus        11 d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvFe   90 (355)
T KOG0033|consen   11 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFD   90 (355)
T ss_pred             hhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEEe
Confidence            4566678899999999999987 679999999887655544457889999999999999999999999999999999999


Q ss_pred             ecCCCCHhh
Q 040888          484 YYRNGSLHE  492 (495)
Q Consensus       484 y~~~GsL~~  492 (495)
                      +|++|+|..
T Consensus        91 ~m~G~dl~~   99 (355)
T KOG0033|consen   91 LVTGGELFE   99 (355)
T ss_pred             cccchHHHH
Confidence            999999865

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=98.99  E-value=1.2e-09  Score=107.36  Aligned_cols=90  Identities=27%  Similarity=0.559  Sum_probs=74.0

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCC--EEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGK--VLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~--~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~l  480 (495)
                      ++|+..+.||+|+||.||+|... ++.  .+|+|.+.... .....+.|.+|++++.++ +|+||+++++++..++..++
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~l   85 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA-SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL   85 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccC-CHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceE
Confidence            46777899999999999999974 454  45787775432 122346788999999999 89999999999999999999


Q ss_pred             EEEecCCCCHhhhhC
Q 040888          481 IYDYYRNGSLHEFLH  495 (495)
Q Consensus       481 v~ey~~~GsL~~~L~  495 (495)
                      |+||+++|+|.++++
T Consensus        86 v~e~~~~~~L~~~l~  100 (303)
T cd05088          86 AIEYAPHGNLLDFLR  100 (303)
T ss_pred             EEEeCCCCcHHHHHH
Confidence            999999999998763

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=98.98  E-value=2.5e-09  Score=104.89  Aligned_cols=88  Identities=17%  Similarity=0.318  Sum_probs=76.2

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      .+|...+.||+|+||.||+|+. .+++.||+|.+......  ..+.+.+|+.++++++|+|++++++++..++..++|||
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~--~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e   97 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQP--KKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME   97 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcc--hHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeec
Confidence            3566778899999999999986 46889999998754322  24678899999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        98 ~~~~~~L~~~~  108 (296)
T cd06654          98 YLAGGSLTDVV  108 (296)
T ss_pred             ccCCCCHHHHH
Confidence            99999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=98.98  E-value=6.4e-10  Score=107.74  Aligned_cols=87  Identities=23%  Similarity=0.361  Sum_probs=74.0

Q ss_pred             CcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEec
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYY  485 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~  485 (495)
                      |+..+.||+|+||.||+|... ++..||+|.+...... ...+.+.+|++++++++||||+++++++..++..++|+||+
T Consensus         6 y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06642           6 FTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAE-DEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYL   84 (277)
T ss_pred             HHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccch-HHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEcc
Confidence            444577999999999999874 5789999998754322 23467899999999999999999999999999999999999


Q ss_pred             CCCCHhhhh
Q 040888          486 RNGSLHEFL  494 (495)
Q Consensus       486 ~~GsL~~~L  494 (495)
                      ++|+|.+++
T Consensus        85 ~~~~L~~~~   93 (277)
T cd06642          85 GGGSALDLL   93 (277)
T ss_pred             CCCcHHHHh
Confidence            999998875

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=98.98  E-value=2.8e-09  Score=101.86  Aligned_cols=88  Identities=20%  Similarity=0.372  Sum_probs=75.1

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|...+.||+|+||.||++... ++..+|+|.++..... ...+.+.+|+.++++++|+||+++.+++..++..++||||
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   79 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSS-SAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEY   79 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcch-HHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEee
Confidence            3566789999999999999874 5889999998643321 2346788999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        80 ~~~~~l~~~~   89 (255)
T cd08219          80 CDGGDLMQKI   89 (255)
T ss_pred             CCCCcHHHHH
Confidence            9999998765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=98.98  E-value=2e-09  Score=104.49  Aligned_cols=82  Identities=21%  Similarity=0.331  Sum_probs=69.0

Q ss_pred             eccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCCCH
Q 040888          413 LGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSL  490 (495)
Q Consensus       413 iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~GsL  490 (495)
                      ||+|+||.||++... +|+.+|+|++....... ...+.+..|++++.+++||||+++.+++..+...++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            699999999999874 58999999997543221 1234566799999999999999999999999999999999999999


Q ss_pred             hhhh
Q 040888          491 HEFL  494 (495)
Q Consensus       491 ~~~L  494 (495)
                      .+++
T Consensus        81 ~~~~   84 (277)
T cd05607          81 KYHI   84 (277)
T ss_pred             HHHH
Confidence            8765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=98.98  E-value=2e-09  Score=107.25  Aligned_cols=84  Identities=13%  Similarity=0.279  Sum_probs=69.9

Q ss_pred             ceeccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          411 RLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      +.||+|+||.||++... +++.||+|.+....... ...+.+.+|+.++.++ +|||||++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            46999999999999974 58899999997643221 2245677888888776 899999999999999999999999999


Q ss_pred             CCHhhhh
Q 040888          488 GSLHEFL  494 (495)
Q Consensus       488 GsL~~~L  494 (495)
                      |+|.+++
T Consensus        81 ~~L~~~~   87 (329)
T cd05618          81 GDLMFHM   87 (329)
T ss_pred             CCHHHHH
Confidence            9998765

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=98.98  E-value=9e-10  Score=107.21  Aligned_cols=88  Identities=19%  Similarity=0.279  Sum_probs=75.7

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|+..+.||+|+||.||++... ++..||+|.+..... ....+.+.+|++++.+++|+||+++++++...+..++|+||
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~-~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (286)
T cd06622           2 EIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELD-ESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEY   80 (286)
T ss_pred             hhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccC-HHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEee
Confidence            4666789999999999999985 689999999865321 22246789999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++++|.+++
T Consensus        81 ~~~~~l~~~~   90 (286)
T cd06622          81 MDAGSLDKLY   90 (286)
T ss_pred             cCCCCHHHHH
Confidence            9999998875

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=98.98  E-value=2.1e-09  Score=104.75  Aligned_cols=88  Identities=18%  Similarity=0.256  Sum_probs=73.6

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--CEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ--GHNILIY  482 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~~~lv~  482 (495)
                      +|...+.||.|++|.||++... +++.+|+|.+...... ....++.+|++++++++||||++++++|...  ...++||
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   80 (287)
T cd06621           2 KIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNP-DLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAM   80 (287)
T ss_pred             ceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCch-HHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEE
Confidence            5677889999999999999984 5889999998754321 2356789999999999999999999998654  3678999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        81 e~~~~~~L~~~l   92 (287)
T cd06621          81 EYCEGGSLDSIY   92 (287)
T ss_pred             EecCCCCHHHHH
Confidence            999999998764

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=98.98  E-value=2.6e-09  Score=102.36  Aligned_cols=88  Identities=22%  Similarity=0.421  Sum_probs=77.8

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|...+.||+|++|.||+++.. +++.|+||++...... ...+.+.+|++.+.+++|+|++++++++...+..++|+||
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDE-EFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEY   80 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcch-HHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEe
Confidence            5777899999999999999986 4899999998765332 2357899999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++++|.+++
T Consensus        81 ~~~~~L~~~l   90 (264)
T cd06623          81 MDGGSLADLL   90 (264)
T ss_pred             cCCCcHHHHH
Confidence            9999999876

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=98.98  E-value=1.5e-09  Score=105.88  Aligned_cols=88  Identities=28%  Similarity=0.603  Sum_probs=74.5

Q ss_pred             cCCcccceeccCCceEEEEEEc------CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  478 (495)
                      ++|...+.||+|+||.||++..      .++..+|+|.+....  ....+.|.+|++++.+++||||++++++|...+..
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   82 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS--DNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPL   82 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcC--HHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCcc
Confidence            4567789999999999999974      234578999986542  22356799999999999999999999999999999


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++||||+++|+|.+++
T Consensus        83 ~lv~e~~~~~~L~~~i   98 (288)
T cd05093          83 IMVFEYMKHGDLNKFL   98 (288)
T ss_pred             EEEEEcCCCCCHHHHH
Confidence            9999999999998876

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=98.98  E-value=1.1e-09  Score=104.83  Aligned_cols=88  Identities=25%  Similarity=0.455  Sum_probs=73.2

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCC-cceEEEEEEeCC------E
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN-IAELVGFCSEQG------H  477 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~n-iv~l~g~~~~~~------~  477 (495)
                      .|...++||+|.||+||+|+. .+|+.||+|+++......+....-.+|+.++.+++|+| ||+|.+++...+      .
T Consensus        12 ~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~   91 (323)
T KOG0594|consen   12 DYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGK   91 (323)
T ss_pred             HHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccce
Confidence            345557799999999999987 56899999999876443333456789999999999999 999999999877      7


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++|+||++. +|.+++
T Consensus        92 l~lvfe~~d~-DL~~ym  107 (323)
T KOG0594|consen   92 LYLVFEFLDR-DLKKYM  107 (323)
T ss_pred             EEEEEEeecc-cHHHHH
Confidence            8899999975 787765

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=98.98  E-value=2.1e-09  Score=105.75  Aligned_cols=89  Identities=18%  Similarity=0.304  Sum_probs=76.4

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      +|...+.||+|+||.||++... .++.||+|.+...... ....+.+.+|++++..++||||+++++.+..++..++|||
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (305)
T cd05609           2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVME   81 (305)
T ss_pred             CceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEe
Confidence            6777899999999999999984 5889999998754321 1224578899999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        82 ~~~g~~L~~~l   92 (305)
T cd05609          82 YVEGGDCATLL   92 (305)
T ss_pred             cCCCCcHHHHH
Confidence            99999999876

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.98  E-value=2.7e-11  Score=121.32  Aligned_cols=144  Identities=30%  Similarity=0.437  Sum_probs=101.7

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNL  146 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  146 (495)
                      ..++.|+|+.|+++ .+|..++.|+ |+.|-+++|+++ .+|..+.  ..|..||.+.|.+. .+|..++.+.+|+.|++
T Consensus       121 ~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~v  196 (722)
T KOG0532|consen  121 EALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNV  196 (722)
T ss_pred             hHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHH
Confidence            45677777777776 4566677765 778888888776 5666665  67777788888877 67777888888888888


Q ss_pred             ccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc----CcEEEeecC
Q 040888          147 GSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP----LDELNVENN  219 (495)
Q Consensus       147 ~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~----L~~l~l~~N  219 (495)
                      ..|++. .+|+.+..+ .|..||+|.|+++ .||..|.+|+.|++|-|.+|.|...+..+....    .++|+..-.
T Consensus       197 rRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  197 RRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            888877 455556544 4777888888887 778888888888888888888776664332221    455665544

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=98.98  E-value=2e-09  Score=104.58  Aligned_cols=87  Identities=21%  Similarity=0.374  Sum_probs=75.6

Q ss_pred             CcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEec
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYY  485 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~  485 (495)
                      |...+.||+|+||.||+|... +|+.||+|++..........+.+.+|++++++++||||+++++++..+...++|+||+
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   81 (286)
T cd07832           2 YKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEYM   81 (286)
T ss_pred             ceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEeccc
Confidence            566788999999999999974 6899999998765432333567999999999999999999999999999999999999


Q ss_pred             CCCCHhhhh
Q 040888          486 RNGSLHEFL  494 (495)
Q Consensus       486 ~~GsL~~~L  494 (495)
                       +++|.+++
T Consensus        82 -~~~L~~~~   89 (286)
T cd07832          82 -PSDLSEVL   89 (286)
T ss_pred             -CCCHHHHH
Confidence             99998875

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=98.97  E-value=1.6e-09  Score=106.04  Aligned_cols=88  Identities=23%  Similarity=0.461  Sum_probs=74.7

Q ss_pred             CcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc---cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ---RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~---~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      |...+.||+|+||.||+|... +++.||||++......   ......+..|++++.+++|+||+++++++...+..++||
T Consensus         2 y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (298)
T cd07841           2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVF   81 (298)
T ss_pred             ceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEE
Confidence            566788999999999999974 6899999999765432   122456778999999999999999999999999999999


Q ss_pred             EecCCCCHhhhhC
Q 040888          483 DYYRNGSLHEFLH  495 (495)
Q Consensus       483 ey~~~GsL~~~L~  495 (495)
                      ||+ +|+|.++++
T Consensus        82 e~~-~~~L~~~i~   93 (298)
T cd07841          82 EFM-ETDLEKVIK   93 (298)
T ss_pred             ccc-CCCHHHHHh
Confidence            999 899988763

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=98.97  E-value=1.6e-09  Score=104.52  Aligned_cols=83  Identities=22%  Similarity=0.413  Sum_probs=68.1

Q ss_pred             eeccCCceEEEEEEcCCC---CEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCC
Q 040888          412 LLGEGTIGRVYRAKYPDG---KVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNG  488 (495)
Q Consensus       412 ~iG~G~~g~Vy~~~~~~g---~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~G  488 (495)
                      .||+|+||.||+|...++   ..+++|.+..... ....+.|.+|+++++.++||||++++++|......++||||+++|
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   80 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANAS-SKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELG   80 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCC-hHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCC
Confidence            589999999999976432   3566777654322 123568999999999999999999999999999999999999999


Q ss_pred             CHhhhhC
Q 040888          489 SLHEFLH  495 (495)
Q Consensus       489 sL~~~L~  495 (495)
                      +|.++++
T Consensus        81 ~L~~~l~   87 (268)
T cd05086          81 DLKSYLS   87 (268)
T ss_pred             cHHHHHH
Confidence            9998763

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=98.97  E-value=2.2e-09  Score=103.55  Aligned_cols=87  Identities=29%  Similarity=0.552  Sum_probs=69.7

Q ss_pred             cccceeccCCceEEEEEEcCC-CC--EEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC------CEE
Q 040888          408 ATGRLLGEGTIGRVYRAKYPD-GK--VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ------GHN  478 (495)
Q Consensus       408 ~~~~~iG~G~~g~Vy~~~~~~-g~--~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~------~~~  478 (495)
                      ...+.||+|+||.||+|+..+ +.  .||+|.++.........+.|.+|++++.+++|+||++++++|...      ...
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   81 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSP   81 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCc
Confidence            346889999999999999854 33  589999876433333356789999999999999999999998542      246


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++|+|||++|+|.+++
T Consensus        82 ~~v~e~~~~~~l~~~~   97 (272)
T cd05075          82 VVILPFMKHGDLHSFL   97 (272)
T ss_pred             EEEEEeCCCCcHHHHH
Confidence            8999999999998765

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=98.97  E-value=2.5e-09  Score=105.34  Aligned_cols=82  Identities=26%  Similarity=0.449  Sum_probs=67.7

Q ss_pred             cccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHh--cCCCCCcceEEEEEEeCC----EEEEE
Q 040888          408 ATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS--RIRHTNIAELVGFCSEQG----HNILI  481 (495)
Q Consensus       408 ~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~--~l~H~niv~l~g~~~~~~----~~~lv  481 (495)
                      ....+||+|+||.||||.+. ++.||||++....     .+.|.+|-++.+  .++|+||++++++-....    +.+||
T Consensus       213 ~l~eli~~Grfg~V~KaqL~-~~~VAVKifp~~~-----kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLV  286 (534)
T KOG3653|consen  213 QLLELIGRGRFGCVWKAQLD-NRLVAVKIFPEQE-----KQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLV  286 (534)
T ss_pred             hhHHHhhcCccceeehhhcc-CceeEEEecCHHH-----HHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEE
Confidence            34578999999999999994 5899999997542     456777766654  579999999998876655    78899


Q ss_pred             EEecCCCCHhhhhC
Q 040888          482 YDYYRNGSLHEFLH  495 (495)
Q Consensus       482 ~ey~~~GsL~~~L~  495 (495)
                      +||-++|+|.+||.
T Consensus       287 t~fh~kGsL~dyL~  300 (534)
T KOG3653|consen  287 TEFHPKGSLCDYLK  300 (534)
T ss_pred             eeeccCCcHHHHHH
Confidence            99999999999974

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=98.97  E-value=2.5e-09  Score=103.40  Aligned_cols=89  Identities=26%  Similarity=0.382  Sum_probs=76.4

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|...+.||.|+||.||+|... +++.||+|.+..... ......+.+|++++++++|+|++++.+++..+...++|+||
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEA-EDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEY   80 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeecccc-chHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEe
Confidence            4666788999999999999975 588999999875432 22346788999999999999999999999999999999999


Q ss_pred             cCCCCHhhhhC
Q 040888          485 YRNGSLHEFLH  495 (495)
Q Consensus       485 ~~~GsL~~~L~  495 (495)
                      +++|+|.++++
T Consensus        81 ~~~~~L~~~~~   91 (274)
T cd06609          81 CGGGSCLDLLK   91 (274)
T ss_pred             eCCCcHHHHHh
Confidence            99999998763

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=98.97  E-value=1.4e-09  Score=104.70  Aligned_cols=90  Identities=21%  Similarity=0.373  Sum_probs=76.4

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccc-ccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHF-QRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||++.. .++..+|||.+..... .....++|.+|++++..++|+||+++++++..++..+++|
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            3567778999999999999996 5789999998865322 1223467899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        82 e~~~~~~L~~~~   93 (267)
T cd08229          82 ELADAGDLSRMI   93 (267)
T ss_pred             EecCCCCHHHHH
Confidence            999999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=98.96  E-value=2.7e-09  Score=105.29  Aligned_cols=88  Identities=20%  Similarity=0.395  Sum_probs=73.8

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||+|... ++..||+|+++..... .....+.+|++++++++||||+++++++..++..++|||
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   84 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEE-GAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFE   84 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccC-CcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEe
Confidence            45777899999999999999875 5889999998754322 224567889999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++ +|.+++
T Consensus        85 ~~~~-~l~~~~   94 (309)
T cd07872          85 YLDK-DLKQYM   94 (309)
T ss_pred             CCCC-CHHHHH
Confidence            9975 777664

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=98.96  E-value=3.5e-09  Score=101.83  Aligned_cols=90  Identities=24%  Similarity=0.410  Sum_probs=73.5

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc---cccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--CEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ---RANSESFSEIVQNISRIRHTNIAELVGFCSEQ--GHN  478 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~---~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~~  478 (495)
                      .+|...+.||+|+||.||+|... ++..||+|.+......   ....+.+.+|++++.+++||||+++++++.+.  ...
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            36778899999999999999874 5899999988643211   11245788999999999999999999988763  457


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++|+||+++|+|.+++
T Consensus        82 ~~v~e~~~~~~L~~~l   97 (265)
T cd06652          82 SIFMEHMPGGSIKDQL   97 (265)
T ss_pred             EEEEEecCCCcHHHHH
Confidence            7999999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=98.96  E-value=2.4e-09  Score=106.02  Aligned_cols=84  Identities=18%  Similarity=0.328  Sum_probs=69.0

Q ss_pred             ceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhc-CCCCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          411 RLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISR-IRHTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~-l~H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      +.||+|+||.||+|... +++.||||.++..... ....+.+..|..++.. .+||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            46899999999999985 5889999999764221 1223556777888876 4999999999999999999999999999


Q ss_pred             CCHhhhh
Q 040888          488 GSLHEFL  494 (495)
Q Consensus       488 GsL~~~L  494 (495)
                      |+|.+++
T Consensus        81 g~L~~~l   87 (316)
T cd05619          81 GDLMFHI   87 (316)
T ss_pred             CcHHHHH
Confidence            9998875

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.96  E-value=6.8e-10  Score=110.05  Aligned_cols=88  Identities=24%  Similarity=0.369  Sum_probs=78.6

Q ss_pred             CcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEec
Q 040888          407 FATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYY  485 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~  485 (495)
                      |+..+.||+|.|..|-.|++ -.|..||||++.+.............||+.|.-++|||||+|+.+...+...|||.|.-
T Consensus        20 YDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLELG   99 (864)
T KOG4717|consen   20 YDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILELG   99 (864)
T ss_pred             ehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEEec
Confidence            55678899999999999887 57999999999988765444567889999999999999999999999999999999999


Q ss_pred             CCCCHhhhh
Q 040888          486 RNGSLHEFL  494 (495)
Q Consensus       486 ~~GsL~~~L  494 (495)
                      ++|+|++||
T Consensus       100 D~GDl~DyI  108 (864)
T KOG4717|consen  100 DGGDLFDYI  108 (864)
T ss_pred             CCchHHHHH
Confidence            999999986

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=98.96  E-value=1.8e-09  Score=103.87  Aligned_cols=88  Identities=22%  Similarity=0.366  Sum_probs=75.2

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||+|.. .+++.||+|.++....  .....+.+|+.++..++||||+++++++...+..++|+|
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e   86 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPG--EDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICME   86 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCch--hHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEe
Confidence            3566678899999999999987 4688999999865422  224568899999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        87 ~~~~~~L~~~~   97 (267)
T cd06645          87 FCGGGSLQDIY   97 (267)
T ss_pred             ccCCCcHHHHH
Confidence            99999998875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=98.96  E-value=1.5e-09  Score=107.89  Aligned_cols=83  Identities=24%  Similarity=0.428  Sum_probs=73.4

Q ss_pred             cceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCC
Q 040888          410 GRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNG  488 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~G  488 (495)
                      .++||+|.||+||-|++ ++|+.||||++.+.+.....+.+..+|+.+|.+++||.||.+.--|+..+..++|||-+ +|
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl-~G  647 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKL-HG  647 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhh-cc
Confidence            58899999999999998 57999999999887765555778999999999999999999999999999999999998 45


Q ss_pred             CHhhh
Q 040888          489 SLHEF  493 (495)
Q Consensus       489 sL~~~  493 (495)
                      |..+.
T Consensus       648 DMLEM  652 (888)
T KOG4236|consen  648 DMLEM  652 (888)
T ss_pred             hHHHH
Confidence            65543

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=98.96  E-value=2.2e-09  Score=106.51  Aligned_cols=84  Identities=21%  Similarity=0.352  Sum_probs=67.9

Q ss_pred             ceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHH-HHhcCCCCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          411 RLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQ-NISRIRHTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~-~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      +.||+|+||.||+|+.. +++.||+|++...... ....+.+.+|.. ++..++|||||++++++...+..++||||+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999984 6889999998754321 112344555554 57889999999999999999999999999999


Q ss_pred             CCHhhhh
Q 040888          488 GSLHEFL  494 (495)
Q Consensus       488 GsL~~~L  494 (495)
                      |+|.+++
T Consensus        81 ~~L~~~l   87 (321)
T cd05603          81 GELFFHL   87 (321)
T ss_pred             CCHHHHH
Confidence            9998765

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=98.96  E-value=1.3e-09  Score=104.23  Aligned_cols=87  Identities=30%  Similarity=0.536  Sum_probs=73.6

Q ss_pred             cccceeccCCceEEEEEEcCC-CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecC
Q 040888          408 ATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYR  486 (495)
Q Consensus       408 ~~~~~iG~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~  486 (495)
                      ...+.||+|+||.||++.... ++.+|+|.+..............+|+..+.+++||||+++++++......++||||++
T Consensus         2 ~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~~   81 (260)
T PF00069_consen    2 RLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYCP   81 (260)
T ss_dssp             EEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEET
T ss_pred             EEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccccccccccccccccccccccccccccc
Confidence            456889999999999999854 6689999998764433223344669999999999999999999999999999999999


Q ss_pred             CCCHhhhh
Q 040888          487 NGSLHEFL  494 (495)
Q Consensus       487 ~GsL~~~L  494 (495)
                      +|+|.++|
T Consensus        82 ~~~L~~~l   89 (260)
T PF00069_consen   82 GGSLQDYL   89 (260)
T ss_dssp             TEBHHHHH
T ss_pred             cccccccc
Confidence            99999876

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=98.95  E-value=2.1e-09  Score=103.68  Aligned_cols=90  Identities=23%  Similarity=0.462  Sum_probs=74.6

Q ss_pred             HhccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeC----
Q 040888          402 TATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQ----  475 (495)
Q Consensus       402 ~~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~----  475 (495)
                      .+++.|...+.||+|+||.||+|... +++.||+|.+....   .....+.+|+.++.++ +|+|++++.++|...    
T Consensus         3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~---~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~   79 (272)
T cd06637           3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG---DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPG   79 (272)
T ss_pred             ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC---ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCC
Confidence            34566777889999999999999874 58899999986542   2245788999999998 799999999999753    


Q ss_pred             --CEEEEEEEecCCCCHhhhh
Q 040888          476 --GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       476 --~~~~lv~ey~~~GsL~~~L  494 (495)
                        ...++||||+++|+|.+++
T Consensus        80 ~~~~~~iv~e~~~~~~L~~~l  100 (272)
T cd06637          80 MDDQLWLVMEFCGAGSVTDLI  100 (272)
T ss_pred             CCcEEEEEEEcCCCCcHHHHH
Confidence              4578999999999998875

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=98.95  E-value=3.7e-10  Score=116.23  Aligned_cols=85  Identities=26%  Similarity=0.504  Sum_probs=71.1

Q ss_pred             cceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC------EEEEEE
Q 040888          410 GRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG------HNILIY  482 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~------~~~lv~  482 (495)
                      .+.||+|+||.||+|+. ..|+.||||..+..... ...+...+|+++|++++|+|||++++.=.+..      ...+||
T Consensus        18 ~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~-r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlvm   96 (732)
T KOG4250|consen   18 DERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSL-RPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLVM   96 (732)
T ss_pred             hhhhcCCccceeeeecccccccchhHHhhhhhccc-chHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEEE
Confidence            57799999999999996 56999999999875422 23567889999999999999999988765543      467999


Q ss_pred             EecCCCCHhhhhC
Q 040888          483 DYYRNGSLHEFLH  495 (495)
Q Consensus       483 ey~~~GsL~~~L~  495 (495)
                      |||.+|||+..|.
T Consensus        97 EyC~gGsL~~~L~  109 (732)
T KOG4250|consen   97 EYCSGGSLRKVLN  109 (732)
T ss_pred             eecCCCcHHHHhc
Confidence            9999999998763

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=98.95  E-value=1.6e-09  Score=105.35  Aligned_cols=88  Identities=26%  Similarity=0.477  Sum_probs=74.1

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|+..+.||+|++|.||+|+.. +++.||||++..........+.+.+|++++++++||||+++++++..++..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeec
Confidence            4677899999999999999874 689999999875433222345788999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      ++ ++|.+++
T Consensus        81 ~~-~~l~~~~   89 (284)
T cd07860          81 LH-QDLKKFM   89 (284)
T ss_pred             cc-cCHHHHH
Confidence            96 5787664

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=98.95  E-value=2.4e-09  Score=102.49  Aligned_cols=82  Identities=23%  Similarity=0.444  Sum_probs=68.2

Q ss_pred             eeccCCceEEEEEEc---CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCC
Q 040888          412 LLGEGTIGRVYRAKY---PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNG  488 (495)
Q Consensus       412 ~iG~G~~g~Vy~~~~---~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~G  488 (495)
                      .||+|+||.||+|.+   .++..+|+|+++.........++|.+|+.++++++|+||+++++++. .+..++||||+++|
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~~~   80 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAELG   80 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCCCC
Confidence            589999999999975   35789999998754332233568999999999999999999999986 45668999999999


Q ss_pred             CHhhhh
Q 040888          489 SLHEFL  494 (495)
Q Consensus       489 sL~~~L  494 (495)
                      +|.+++
T Consensus        81 ~L~~~l   86 (257)
T cd05116          81 PLNKFL   86 (257)
T ss_pred             cHHHHH
Confidence            998876

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=98.95  E-value=2.8e-09  Score=103.40  Aligned_cols=89  Identities=28%  Similarity=0.528  Sum_probs=74.3

Q ss_pred             CCcccceeccCCceEEEEEEcC-----CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe--CCEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE--QGHN  478 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-----~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~--~~~~  478 (495)
                      +|...+.||+|+||.||++++.     .+..+|||.+...... ...+.|.+|++++++++|+||+++++++..  ....
T Consensus         5 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~   83 (284)
T cd05038           5 HLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEE-QHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSL   83 (284)
T ss_pred             hchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccch-HHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCce
Confidence            4555688999999999999863     3679999999765332 235689999999999999999999999987  5578


Q ss_pred             EEEEEecCCCCHhhhhC
Q 040888          479 ILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L~  495 (495)
                      ++|+||+++|+|.++++
T Consensus        84 ~lv~e~~~~~~l~~~l~  100 (284)
T cd05038          84 RLIMEYLPSGSLRDYLQ  100 (284)
T ss_pred             EEEEecCCCCCHHHHHH
Confidence            99999999999998863

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=98.95  E-value=2.2e-09  Score=106.55  Aligned_cols=84  Identities=21%  Similarity=0.362  Sum_probs=70.0

Q ss_pred             ceeccCCceEEEEEEcC-CCCEEEEEEecCccc-ccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          411 RLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHF-QRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      +.||+|+||.||+|+.. +++.||||++..... .....+.+..|.+++..+ +||||+++++++...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            46899999999999985 588999999975432 112345677888888876 699999999999999999999999999


Q ss_pred             CCHhhhh
Q 040888          488 GSLHEFL  494 (495)
Q Consensus       488 GsL~~~L  494 (495)
                      |+|.+++
T Consensus        81 g~L~~~i   87 (320)
T cd05590          81 GDLMFHI   87 (320)
T ss_pred             chHHHHH
Confidence            9998775

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=98.95  E-value=2.5e-09  Score=104.66  Aligned_cols=88  Identities=19%  Similarity=0.337  Sum_probs=75.9

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||++.. .++..||+|.+.....  ...+.+.+|+.++++++|||+++++++|...+..++|+|
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~--~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e   96 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQ--PKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVME   96 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccc--hHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEe
Confidence            4567778999999999999986 4688999999864322  224678999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        97 ~~~~~~L~~~~  107 (293)
T cd06647          97 YLAGGSLTDVV  107 (293)
T ss_pred             cCCCCcHHHHH
Confidence            99999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=98.95  E-value=2.6e-09  Score=106.03  Aligned_cols=84  Identities=17%  Similarity=0.301  Sum_probs=69.8

Q ss_pred             ceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          411 RLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      +.||+|+||.||+|+.. +++.||+|++...... ....+.+..|.+++..+ +||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            46899999999999985 5889999999764321 12245677888888865 899999999999999999999999999


Q ss_pred             CCHhhhh
Q 040888          488 GSLHEFL  494 (495)
Q Consensus       488 GsL~~~L  494 (495)
                      |+|..++
T Consensus        81 ~~L~~~l   87 (321)
T cd05591          81 GDLMFQI   87 (321)
T ss_pred             CcHHHHH
Confidence            9998765

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=98.95  E-value=1.9e-09  Score=109.34  Aligned_cols=88  Identities=17%  Similarity=0.313  Sum_probs=72.4

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC-----EEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG-----HNI  479 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~-----~~~  479 (495)
                      +|+..+.||+|+||.||++.. .+|+.||||++..........+.+.+|+++++.++|+||+++++++...+     ..+
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            467789999999999999997 46899999998653222223467889999999999999999999998776     789


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +|+||+. ++|.+++
T Consensus        81 lv~e~~~-~~l~~~~   94 (372)
T cd07853          81 VVTELMQ-SDLHKII   94 (372)
T ss_pred             EEeeccc-cCHHHHH
Confidence            9999997 5776654

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=98.95  E-value=1.6e-09  Score=113.87  Aligned_cols=94  Identities=23%  Similarity=0.304  Sum_probs=77.0

Q ss_pred             HHhccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC---
Q 040888          401 LTATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG---  476 (495)
Q Consensus       401 ~~~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~---  476 (495)
                      ....++|...+.||+|+||.||+|.. .+|+.||||++............+.+|+..+..++|+|+++++..+...+   
T Consensus        28 ~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~  107 (496)
T PTZ00283         28 KEQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRN  107 (496)
T ss_pred             cccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccC
Confidence            33456888899999999999999986 56999999999765443333567889999999999999999988775432   


Q ss_pred             -----EEEEEEEecCCCCHhhhh
Q 040888          477 -----HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 -----~~~lv~ey~~~GsL~~~L  494 (495)
                           ..++||||+++|+|.++|
T Consensus       108 ~~~~~~i~lV~Ey~~~gsL~~~l  130 (496)
T PTZ00283        108 PENVLMIALVLDYANAGDLRQEI  130 (496)
T ss_pred             cccceEEEEEEeCCCCCcHHHHH
Confidence                 367999999999998876

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=98.95  E-value=2.7e-09  Score=106.05  Aligned_cols=89  Identities=16%  Similarity=0.233  Sum_probs=73.1

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCC-CcceEEEEEEeCCEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHT-NIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~-niv~l~g~~~~~~~~~lv~  482 (495)
                      +|...+.||+|+||.||+|+.. +++.||||++...... ....+.+..|++++..++|+ +|+++++++...+..++||
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            4667899999999999999975 5789999999764321 22345688899999999765 5788999999889999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        81 E~~~~g~L~~~~   92 (324)
T cd05587          81 EYVNGGDLMYHI   92 (324)
T ss_pred             cCCCCCcHHHHH
Confidence            999999998775

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=98.95  E-value=2.1e-09  Score=105.86  Aligned_cols=90  Identities=29%  Similarity=0.488  Sum_probs=74.8

Q ss_pred             cCCcccceeccCCceEEEEEEcC--------CCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeC
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP--------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQ  475 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~--------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~  475 (495)
                      ++|...+.||+|+||.||++...        .+..+|+|.+..... .....++.+|++++.++ +||||++++++|...
T Consensus        18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   96 (307)
T cd05098          18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDAT-EKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   96 (307)
T ss_pred             HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCC-hHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecC
Confidence            45777899999999999999752        235799999875422 22345788999999999 899999999999999


Q ss_pred             CEEEEEEEecCCCCHhhhhC
Q 040888          476 GHNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       476 ~~~~lv~ey~~~GsL~~~L~  495 (495)
                      +..++|+||+++|+|.++++
T Consensus        97 ~~~~lv~e~~~~~~L~~~i~  116 (307)
T cd05098          97 GPLYVIVEYASKGNLREYLR  116 (307)
T ss_pred             CceEEEEecCCCCcHHHHHH
Confidence            99999999999999998863

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=98.95  E-value=2.7e-09  Score=101.66  Aligned_cols=83  Identities=25%  Similarity=0.446  Sum_probs=73.0

Q ss_pred             ceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCCCH
Q 040888          411 RLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSL  490 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~GsL  490 (495)
                      +.||+|+||.||++...+++.||+|.+...... ...+.|.+|++++++++|+||+++++++......++|+||+++++|
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l   79 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPP-DLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSL   79 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCH-HHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcH
Confidence            368999999999999877999999998764332 2356799999999999999999999999999999999999999999


Q ss_pred             hhhh
Q 040888          491 HEFL  494 (495)
Q Consensus       491 ~~~L  494 (495)
                      .+++
T Consensus        80 ~~~l   83 (251)
T cd05041          80 LTFL   83 (251)
T ss_pred             HHHH
Confidence            8876

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=98.95  E-value=1.7e-09  Score=105.70  Aligned_cols=91  Identities=26%  Similarity=0.544  Sum_probs=75.9

Q ss_pred             hccCCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeC
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQ  475 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~  475 (495)
                      ..++|+..+.||+|+||.||++...      ....+|+|.+...... ....++.+|++++.++ +|+||++++++|..+
T Consensus        10 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~-~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   88 (293)
T cd05053          10 PRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGVCTQE   88 (293)
T ss_pred             CHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCH-HHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCC
Confidence            3456777899999999999999863      2368999998754322 2345688999999999 899999999999999


Q ss_pred             CEEEEEEEecCCCCHhhhh
Q 040888          476 GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       476 ~~~~lv~ey~~~GsL~~~L  494 (495)
                      +..++||||+++|+|.+++
T Consensus        89 ~~~~li~e~~~~~~L~~~l  107 (293)
T cd05053          89 GPLYVVVEYAAHGNLRDFL  107 (293)
T ss_pred             CCeEEEEEeCCCCcHHHHH
Confidence            9999999999999999876

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=98.94  E-value=2.4e-09  Score=104.68  Aligned_cols=90  Identities=30%  Similarity=0.461  Sum_probs=75.7

Q ss_pred             ccCCcccceeccCCceEEEEEEcCC-----------------CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcc
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPD-----------------GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA  466 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~-----------------g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv  466 (495)
                      .++|...+.||+|+||.||++...+                 +..||+|.+...... ...++|.+|++++.+++|||++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~   82 (296)
T cd05051           4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASD-NAREDFLKEVKILSRLSDPNIA   82 (296)
T ss_pred             hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCH-HHHHHHHHHHHHHHhcCCCCEe
Confidence            3467778999999999999997642                 246899998754322 2356899999999999999999


Q ss_pred             eEEEEEEeCCEEEEEEEecCCCCHhhhh
Q 040888          467 ELVGFCSEQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       467 ~l~g~~~~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      +++++|..++..++|+||+++|+|.+++
T Consensus        83 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l  110 (296)
T cd05051          83 RLLGVCTVDPPLCMIMEYMENGDLNQFL  110 (296)
T ss_pred             EEEEEEecCCCcEEEEecCCCCCHHHHH
Confidence            9999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=98.94  E-value=2.6e-09  Score=106.62  Aligned_cols=87  Identities=18%  Similarity=0.376  Sum_probs=70.3

Q ss_pred             CcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC-----EEEE
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG-----HNIL  480 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~-----~~~l  480 (495)
                      |...+.||+|+||.||+|+.. ++..||||++............+.+|++++++++||||+++++++....     ..++
T Consensus         2 y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~l   81 (338)
T cd07859           2 YKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYV   81 (338)
T ss_pred             eEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEE
Confidence            566789999999999999974 6899999998753222223457889999999999999999999986532     4799


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      |||||+ ++|.+++
T Consensus        82 v~e~~~-~~L~~~l   94 (338)
T cd07859          82 VFELME-SDLHQVI   94 (338)
T ss_pred             EEecCC-CCHHHHH
Confidence            999996 6888765

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=98.94  E-value=3.1e-09  Score=103.40  Aligned_cols=87  Identities=29%  Similarity=0.507  Sum_probs=72.7

Q ss_pred             CcccceeccCCceEEEEEEc-----CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--CEEE
Q 040888          407 FATGRLLGEGTIGRVYRAKY-----PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ--GHNI  479 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~~~  479 (495)
                      |...+.||+|+||.||++.+     .++..||+|.+..... ....+.|.+|++++++++|||++++.+++...  ...+
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05079           6 LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESG-GNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIK   84 (284)
T ss_pred             hhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCcccc-HHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceE
Confidence            55678899999999999984     3478899999875432 22346799999999999999999999999875  5678


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +||||+++|+|.+++
T Consensus        85 lv~e~~~g~~L~~~l   99 (284)
T cd05079          85 LIMEFLPSGSLKEYL   99 (284)
T ss_pred             EEEEccCCCCHHHHH
Confidence            999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=98.94  E-value=3.4e-09  Score=103.41  Aligned_cols=88  Identities=20%  Similarity=0.405  Sum_probs=74.4

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|++|.||+|..+ +++.||+|.+...... .....+.+|++++++++|+||+++++++..++..++|||
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   83 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEE-GAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFE   83 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEeccccc-CCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEe
Confidence            46777899999999999999985 6889999998754321 223457789999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |++ ++|.+++
T Consensus        84 ~~~-~~L~~~~   93 (291)
T cd07844          84 YLD-TDLKQYM   93 (291)
T ss_pred             cCC-CCHHHHH
Confidence            998 4898765

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=98.94  E-value=3e-09  Score=102.04  Aligned_cols=86  Identities=22%  Similarity=0.442  Sum_probs=72.6

Q ss_pred             CCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEec
Q 040888          406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYY  485 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~  485 (495)
                      +|.....||+|++|.||+|...++..+|+|.+.....   ..+.|.+|++++++++|+|++++++++. .+..++||||+
T Consensus         7 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~   82 (260)
T cd05069           7 SLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTM---MPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTEFM   82 (260)
T ss_pred             HeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCCc---cHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEEcC
Confidence            4666788999999999999987777899998865432   2467899999999999999999999875 45678999999


Q ss_pred             CCCCHhhhhC
Q 040888          486 RNGSLHEFLH  495 (495)
Q Consensus       486 ~~GsL~~~L~  495 (495)
                      ++|+|.++++
T Consensus        83 ~~~~L~~~~~   92 (260)
T cd05069          83 GKGSLLDFLK   92 (260)
T ss_pred             CCCCHHHHHh
Confidence            9999998863

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=98.94  E-value=2.1e-09  Score=105.64  Aligned_cols=89  Identities=28%  Similarity=0.524  Sum_probs=74.1

Q ss_pred             cCCcccceeccCCceEEEEEEc--------CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeC
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY--------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQ  475 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~--------~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~  475 (495)
                      ++|...+.||+|+||.||+|..        .++..||+|.+..... ....+++.+|+.++..+ +||||+++++++...
T Consensus        15 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~-~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   93 (304)
T cd05101          15 DKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDAT-EKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD   93 (304)
T ss_pred             HHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccc-hHHHHHHHHHHHHHHhhccCCCchheeEEEecC
Confidence            4566779999999999999974        1245799999875322 22346789999999999 899999999999999


Q ss_pred             CEEEEEEEecCCCCHhhhh
Q 040888          476 GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       476 ~~~~lv~ey~~~GsL~~~L  494 (495)
                      ...++||||+++|+|.+++
T Consensus        94 ~~~~lv~e~~~~~~L~~~l  112 (304)
T cd05101          94 GPLYVIVEYASKGNLREYL  112 (304)
T ss_pred             CceEEEEecCCCCcHHHHH
Confidence            9999999999999999886

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=98.94  E-value=3.3e-09  Score=101.50  Aligned_cols=89  Identities=20%  Similarity=0.441  Sum_probs=73.7

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe--CCEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE--QGHNILIY  482 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~--~~~~~lv~  482 (495)
                      +|...+.||+|+||.||++.. .+++.+|+|.+..........+.+..|++++++++|+||+++++++..  ....+++|
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM   80 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence            366678999999999999987 468899999987544333335678899999999999999999998864  34578999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        81 e~~~~~~L~~~l   92 (265)
T cd08217          81 EYCEGGDLAQLI   92 (265)
T ss_pred             hhccCCCHHHHH
Confidence            999999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=98.93  E-value=3.9e-09  Score=103.63  Aligned_cols=88  Identities=23%  Similarity=0.402  Sum_probs=73.8

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||+|... +++.||+|.+...... .....+.+|++++.+++||||+++++++..++..++|+|
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e   84 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEE-GAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFE   84 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEeccccc-CchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEe
Confidence            35677889999999999999875 5889999998654322 224567889999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |++ |+|.+++
T Consensus        85 ~~~-~~l~~~l   94 (301)
T cd07873          85 YLD-KDLKQYL   94 (301)
T ss_pred             ccc-cCHHHHH
Confidence            997 5887765

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=98.93  E-value=5.5e-09  Score=100.46  Aligned_cols=88  Identities=23%  Similarity=0.499  Sum_probs=73.6

Q ss_pred             CcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc-------ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEE
Q 040888          407 FATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR-------ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~-------~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  478 (495)
                      |.....||+|+||.||+|.. .+++.+|+|.+.......       ...+.+.+|++++++++||||+++++++...+..
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHL   81 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCcc
Confidence            45568899999999999987 458899999886542211       1125688999999999999999999999999999


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++|+||+++++|.+++
T Consensus        82 ~lv~e~~~~~~L~~~l   97 (267)
T cd06628          82 NIFLEYVPGGSVAALL   97 (267)
T ss_pred             EEEEEecCCCCHHHHH
Confidence            9999999999998876

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=98.93  E-value=4e-09  Score=102.06  Aligned_cols=88  Identities=27%  Similarity=0.449  Sum_probs=74.7

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCC---CCCcceEEEEEEeCCEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR---HTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~---H~niv~l~g~~~~~~~~~lv  481 (495)
                      .|+..+.||+|+||.||+|.. .++..||+|.+..... ....+++.+|++++++++   |||+++++++|..+...++|
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv   80 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTP-DDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWII   80 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCC-chhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEE
Confidence            356678899999999999997 5689999999865422 223467889999999987   99999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+++++|.+++
T Consensus        81 ~e~~~~~~L~~~~   93 (277)
T cd06917          81 MEYAEGGSVRTLM   93 (277)
T ss_pred             EecCCCCcHHHHH
Confidence            9999999998875

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=98.93  E-value=3.4e-09  Score=105.25  Aligned_cols=84  Identities=23%  Similarity=0.367  Sum_probs=67.8

Q ss_pred             ceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHH-HHhcCCCCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          411 RLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQ-NISRIRHTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~-~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      +.||+|+||+||+|... +|+.||+|.+...... ....+++..|.. ++..++||||+++++++...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            46999999999999984 6899999999754321 112344555554 56789999999999999999999999999999


Q ss_pred             CCHhhhh
Q 040888          488 GSLHEFL  494 (495)
Q Consensus       488 GsL~~~L  494 (495)
                      |+|.+++
T Consensus        81 g~L~~~l   87 (323)
T cd05575          81 GELFFHL   87 (323)
T ss_pred             CCHHHHH
Confidence            9998775

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=98.93  E-value=3.1e-09  Score=105.38  Aligned_cols=84  Identities=18%  Similarity=0.329  Sum_probs=70.0

Q ss_pred             ceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          411 RLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      +.||+|+||.||++... +++.||||.+...... ....+.+..|.+++..+ +||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999985 5889999999754321 12245677888888877 799999999999999999999999999


Q ss_pred             CCHhhhh
Q 040888          488 GSLHEFL  494 (495)
Q Consensus       488 GsL~~~L  494 (495)
                      |+|.+++
T Consensus        81 ~~L~~~~   87 (318)
T cd05570          81 GDLMFHI   87 (318)
T ss_pred             CCHHHHH
Confidence            9998765

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=98.93  E-value=2.7e-09  Score=104.63  Aligned_cols=90  Identities=26%  Similarity=0.488  Sum_probs=74.1

Q ss_pred             cCCcccceeccCCceEEEEEEcCC-CC--EEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPD-GK--VLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~-g~--~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~l  480 (495)
                      ++|...+.||+|+||.||+|...+ +.  .+++|.+..... ....+.|.+|++++.++ +||||+++++++...+..++
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l   80 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFAS-ENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYI   80 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCC-HHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceE
Confidence            467778999999999999998843 43  478888764321 22346789999999999 79999999999999999999


Q ss_pred             EEEecCCCCHhhhhC
Q 040888          481 IYDYYRNGSLHEFLH  495 (495)
Q Consensus       481 v~ey~~~GsL~~~L~  495 (495)
                      |+||+++|+|.++++
T Consensus        81 v~e~~~~~~L~~~l~   95 (297)
T cd05089          81 AIEYAPYGNLLDFLR   95 (297)
T ss_pred             EEEecCCCcHHHHHH
Confidence            999999999998863

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=98.93  E-value=3.9e-09  Score=104.37  Aligned_cols=89  Identities=24%  Similarity=0.436  Sum_probs=77.2

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      +|...+.||+|+||.||+|... ++..||+|.+....... ...+.+.+|++++.+++|+||+++++++...+..++|||
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   81 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMD   81 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEE
Confidence            5777889999999999999985 48999999997653321 234678999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        82 ~~~~~~L~~~~   92 (316)
T cd05574          82 YCPGGELFRLL   92 (316)
T ss_pred             ecCCCCHHHHH
Confidence            99999999876

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=98.93  E-value=3.7e-09  Score=105.14  Aligned_cols=84  Identities=23%  Similarity=0.347  Sum_probs=67.8

Q ss_pred             ceeccCCceEEEEEEc-CCCCEEEEEEecCcccc-cccHHHHHHHHH-HHhcCCCCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          411 RLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQ-RANSESFSEIVQ-NISRIRHTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~f~~e~~-~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      +.||+|+||.||+|+. .+|+.+|+|++...... ....+.+..|.. ++..++||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            4689999999999987 46899999999754221 122345566654 46779999999999999999999999999999


Q ss_pred             CCHhhhh
Q 040888          488 GSLHEFL  494 (495)
Q Consensus       488 GsL~~~L  494 (495)
                      |+|.+++
T Consensus        81 ~~L~~~l   87 (325)
T cd05604          81 GELFFHL   87 (325)
T ss_pred             CCHHHHH
Confidence            9998765

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.93  E-value=1.5e-09  Score=110.87  Aligned_cols=90  Identities=24%  Similarity=0.437  Sum_probs=77.8

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcc-cccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSH-FQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~-~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      +-|..++.||.|+-|.|..|++ .+|+.+|||.+.+.. ..........+|+-+|+-+.|||++++++.+......|+|.
T Consensus        12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvl   91 (786)
T KOG0588|consen   12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVL   91 (786)
T ss_pred             cceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEE
Confidence            3456678999999999999998 679999999997652 22223456789999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|.|+++|
T Consensus        92 Eyv~gGELFdyl  103 (786)
T KOG0588|consen   92 EYVPGGELFDYL  103 (786)
T ss_pred             EecCCchhHHHH
Confidence            999999999986

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=98.93  E-value=2.1e-09  Score=104.31  Aligned_cols=90  Identities=23%  Similarity=0.362  Sum_probs=75.0

Q ss_pred             ccCCcccceeccCCceEEEEEEcCC-----CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe-CCE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPD-----GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE-QGH  477 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~-----g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~-~~~  477 (495)
                      .++|...+.||+|+||.||+|...+     +..|++|++..... ....+.+.+|+.++.+++|+||+++++++.. +..
T Consensus         5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~   83 (280)
T cd05043           5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHAS-EIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEP   83 (280)
T ss_pred             hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCC-HHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence            3567778999999999999999854     67899999864322 2235678999999999999999999999877 467


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++++||+++|+|.+++
T Consensus        84 ~~~~~~~~~~~~L~~~l  100 (280)
T cd05043          84 PFVLYPYMNWGNLKLFL  100 (280)
T ss_pred             CEEEEEcCCCCcHHHHH
Confidence            88999999999999876

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=98.93  E-value=3.5e-09  Score=101.04  Aligned_cols=86  Identities=21%  Similarity=0.349  Sum_probs=76.6

Q ss_pred             cCCcccceeccCCceEEEEEEcCC-CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||+|...+ +..+++|.+.....    .+++.+|++++++++|+|++++++++..++..++++|
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~----~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e   78 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED----LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVME   78 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH----HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEe
Confidence            467778999999999999999864 88999999865421    5689999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++++|.+++
T Consensus        79 ~~~~~~L~~~l   89 (256)
T cd06612          79 YCGAGSVSDIM   89 (256)
T ss_pred             cCCCCcHHHHH
Confidence            99999998876

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=98.93  E-value=4.1e-09  Score=102.35  Aligned_cols=87  Identities=23%  Similarity=0.472  Sum_probs=73.8

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|+..+.||+|++|.||+|+.. +|..||||++...... ...+.+.+|++++++++|+||+++++++...+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   79 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEE-GTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEY   79 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccc-cchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEec
Confidence            4677899999999999999985 5889999998764322 2245678899999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++ +|.+++
T Consensus        80 ~~~-~l~~~~   88 (284)
T cd07836          80 MDK-DLKKYM   88 (284)
T ss_pred             CCc-cHHHHH
Confidence            985 787764

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=98.93  E-value=3.6e-09  Score=104.83  Aligned_cols=84  Identities=18%  Similarity=0.320  Sum_probs=67.6

Q ss_pred             ceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhc-CCCCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          411 RLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISR-IRHTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~-l~H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      +.||+|+||.||+|... +++.||+|+++..... ....+.+..|.+++.. .+||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36999999999999984 5889999999754321 1223455667777664 4899999999999999999999999999


Q ss_pred             CCHhhhh
Q 040888          488 GSLHEFL  494 (495)
Q Consensus       488 GsL~~~L  494 (495)
                      |+|.+++
T Consensus        81 g~L~~~~   87 (316)
T cd05592          81 GDLMFHI   87 (316)
T ss_pred             CcHHHHH
Confidence            9998775

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=98.93  E-value=4.4e-09  Score=103.14  Aligned_cols=88  Identities=18%  Similarity=0.356  Sum_probs=76.1

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      .+|+..+.||.|+||.||+|.. .+++.||+|.+.....  ...+.+.+|+++++.++|||++++++++...+..++|+|
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   96 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQ--PKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVME   96 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccC--chHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEE
Confidence            3577788999999999999986 5689999999865432  224678899999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        97 ~~~~~~L~~~~  107 (296)
T cd06655          97 YLAGGSLTDVV  107 (296)
T ss_pred             ecCCCcHHHHH
Confidence            99999998865

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.92  E-value=8.2e-10  Score=111.13  Aligned_cols=88  Identities=19%  Similarity=0.371  Sum_probs=75.8

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ..|..-..||+|+.|.||.+.- ..++.||||++......  ..+-..+|+.+|+..+|+|||+.+..|...++.|+|||
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~--~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVME  350 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQP--KKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVME  350 (550)
T ss_pred             hhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCC--chhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEe
Confidence            4566678899999999999976 56889999999765432  24557899999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      ||++|+|.+.+
T Consensus       351 ym~ggsLTDvV  361 (550)
T KOG0578|consen  351 YMEGGSLTDVV  361 (550)
T ss_pred             ecCCCchhhhh
Confidence            99999998764

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=98.92  E-value=3.8e-09  Score=102.43  Aligned_cols=89  Identities=19%  Similarity=0.435  Sum_probs=73.2

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCC----EEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGK----VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~----~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      .+|...+.||+|+||.||+|..+ +|.    .+|+|.+..... .....++.+|++++.+++||||++++++|.. +..+
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~   84 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETS-PKANKEILDEAYVMASVDHPHVVRLLGICLS-SQVQ   84 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCC-HHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CceE
Confidence            34666789999999999999874 233    689998875532 2234678999999999999999999999987 7789


Q ss_pred             EEEEecCCCCHhhhhC
Q 040888          480 LIYDYYRNGSLHEFLH  495 (495)
Q Consensus       480 lv~ey~~~GsL~~~L~  495 (495)
                      +|+||+++|+|.++++
T Consensus        85 ~v~e~~~~g~L~~~l~  100 (279)
T cd05057          85 LITQLMPLGCLLDYVR  100 (279)
T ss_pred             EEEecCCCCcHHHHHH
Confidence            9999999999998763

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=98.92  E-value=6.1e-09  Score=99.10  Aligned_cols=89  Identities=28%  Similarity=0.486  Sum_probs=76.8

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--CEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ--GHNILIY  482 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~~~lv~  482 (495)
                      +|...+.||+|++|.||+|..+ ++..|++|++..........+.+.+|++.+++++|+||+++++.+...  ...++|+
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   80 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFL   80 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEE
Confidence            3566789999999999999986 688999999876543223357899999999999999999999999988  8899999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++++|.+++
T Consensus        81 e~~~~~~L~~~~   92 (260)
T cd06606          81 EYVSGGSLSSLL   92 (260)
T ss_pred             EecCCCcHHHHH
Confidence            999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=98.92  E-value=3.6e-09  Score=105.48  Aligned_cols=89  Identities=21%  Similarity=0.340  Sum_probs=73.8

Q ss_pred             CCcccceeccCCceEEEEEEc----CCCCEEEEEEecCcccc--cccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKY----PDGKVLAVKKIDSSHFQ--RANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~----~~g~~vavK~l~~~~~~--~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~  478 (495)
                      +|...+.||+|+||.||+++.    .+++.||+|++......  ....+.+.+|++++.++ +|+||+++++++..++..
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            466788999999999999875    35889999998653221  11245688899999999 599999999999999999


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++||||+++|+|.+++
T Consensus        81 ~lv~e~~~~g~L~~~l   96 (332)
T cd05614          81 HLILDYVSGGEMFTHL   96 (332)
T ss_pred             EEEEeCCCCCcHHHHH
Confidence            9999999999998876

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=98.92  E-value=2.7e-09  Score=103.26  Aligned_cols=89  Identities=18%  Similarity=0.341  Sum_probs=75.2

Q ss_pred             cCCcccceeccCCceEEEEEEcCC------CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPD------GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~------g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  478 (495)
                      ++|...+.||+|+||.||+|...+      +..||+|.+..... ......|.+|++++.+++|+||+++++++......
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~-~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   84 (277)
T cd05032           6 EKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENAS-MRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPT   84 (277)
T ss_pred             HHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccC-HHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCc
Confidence            456778999999999999998742      46899999865432 12245789999999999999999999999999999


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++||||+++|+|.+++
T Consensus        85 ~~v~e~~~~~~L~~~l  100 (277)
T cd05032          85 LVVMELMAKGDLKSYL  100 (277)
T ss_pred             EEEEecCCCCCHHHHH
Confidence            9999999999999876

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=98.92  E-value=4.2e-09  Score=104.66  Aligned_cols=89  Identities=16%  Similarity=0.231  Sum_probs=72.6

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      +|...+.||+|+||.||+|+.. +++.||+|.+...... ....+.+..|.+++..+ +|++|+++++++...+..++||
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            4677899999999999999875 5789999999754321 12234567788888777 5899999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        81 E~~~~g~L~~~~   92 (323)
T cd05616          81 EYVNGGDLMYQI   92 (323)
T ss_pred             cCCCCCCHHHHH
Confidence            999999998765

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=98.92  E-value=2.9e-09  Score=104.00  Aligned_cols=87  Identities=28%  Similarity=0.616  Sum_probs=73.7

Q ss_pred             CCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      +|...+.||+|+||.||+|+..      ++..+++|.+.....  ...+.|.+|++++++++|+||+++++++...+..+
T Consensus         6 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   83 (291)
T cd05094           6 DIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTL--AARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLI   83 (291)
T ss_pred             HeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccH--HHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceE
Confidence            4666789999999999999742      355789999865432  22467999999999999999999999999999999


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +||||+++|+|.+++
T Consensus        84 lv~e~~~~~~L~~~i   98 (291)
T cd05094          84 MVFEYMKHGDLNKFL   98 (291)
T ss_pred             EEEecCCCCcHHHHH
Confidence            999999999999886

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=98.92  E-value=2.9e-09  Score=102.22  Aligned_cols=88  Identities=23%  Similarity=0.299  Sum_probs=76.6

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|+..+.||+|+||.||++... +++.+|+|++...... ...+++.+|++.+++++||||+++++++......++|+||
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINE-AIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEY   80 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccCh-HHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEe
Confidence            4666788999999999999985 5889999998765322 3356789999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++++|.+++
T Consensus        81 ~~~~~L~~~~   90 (265)
T cd06605          81 MDGGSLDKIL   90 (265)
T ss_pred             cCCCcHHHHH
Confidence            9999999876

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=98.92  E-value=4.8e-09  Score=102.14  Aligned_cols=89  Identities=24%  Similarity=0.362  Sum_probs=78.2

Q ss_pred             hccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      .++.|...+.||+|++|.||+|..+ ++..+++|++.....   ..+.+.+|++++++++|+|++++++++...+..++|
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv   93 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ---NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVV   93 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch---hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEE
Confidence            4556777789999999999999986 688999999975432   356789999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      +||+++++|.+++
T Consensus        94 ~e~~~~~~L~~~l  106 (286)
T cd06614          94 MEYMDGGSLTDII  106 (286)
T ss_pred             EeccCCCcHHHHH
Confidence            9999999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=98.92  E-value=4.2e-09  Score=114.68  Aligned_cols=90  Identities=17%  Similarity=0.296  Sum_probs=77.5

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|... +++.||||++...... ......+.+|++++..++||||+++++++...+..++||
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVm   83 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVM   83 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEE
Confidence            56777899999999999999985 6899999999754321 122467889999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        84 Ey~~g~~L~~li   95 (669)
T cd05610          84 EYLIGGDVKSLL   95 (669)
T ss_pred             eCCCCCCHHHHH
Confidence            999999998876

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=98.92  E-value=4.5e-09  Score=102.69  Aligned_cols=88  Identities=22%  Similarity=0.412  Sum_probs=75.2

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      +.|...+.||+|+||.||+|+.. ++..+|+|.+....  ....+.+.+|++++++++|+|++++++++..++..++|||
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   89 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKS--EEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIE   89 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCC--HHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEe
Confidence            34666788999999999999985 58899999987542  2235678999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|..++
T Consensus        90 ~~~~~~l~~~~  100 (292)
T cd06644          90 FCPGGAVDAIM  100 (292)
T ss_pred             cCCCCcHHHHH
Confidence            99999997654

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.92  E-value=3.6e-10  Score=110.30  Aligned_cols=88  Identities=27%  Similarity=0.430  Sum_probs=77.2

Q ss_pred             CcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEec
Q 040888          407 FATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYY  485 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~  485 (495)
                      |.....||+|+||.||||.. ..++.||+|.+..+... ...++..+|+.+++.++|+||.+.+|.+..+...+++||||
T Consensus        15 ~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~-deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~   93 (467)
T KOG0201|consen   15 YTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAE-DEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYC   93 (467)
T ss_pred             cccchhccccccceeeeeeeccccceEEEEEechhhcc-hhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHh
Confidence            44568899999999999998 46899999999876543 33678899999999999999999999999999999999999


Q ss_pred             CCCCHhhhhC
Q 040888          486 RNGSLHEFLH  495 (495)
Q Consensus       486 ~~GsL~~~L~  495 (495)
                      .+|++.+.|+
T Consensus        94 ~gGsv~~lL~  103 (467)
T KOG0201|consen   94 GGGSVLDLLK  103 (467)
T ss_pred             cCcchhhhhc
Confidence            9999988763

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=98.92  E-value=3.4e-09  Score=101.92  Aligned_cols=82  Identities=27%  Similarity=0.424  Sum_probs=68.1

Q ss_pred             ceeccCCceEEEEEEcCC-------------CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCE
Q 040888          411 RLLGEGTIGRVYRAKYPD-------------GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGH  477 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~~-------------g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  477 (495)
                      +.||+|+||.||+|++.+             ...|++|.+.....  .....|.+|+.+++.++||||++++++|..+..
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~--~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~   78 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHR--DISLAFFETASMMRQVSHKHIVLLYGVCVRDVE   78 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhh--hHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCC
Confidence            358999999999998632             23588998765432  234578899999999999999999999999989


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++||||+++|+|..++
T Consensus        79 ~~lv~e~~~~~~l~~~~   95 (262)
T cd05077          79 NIMVEEFVEFGPLDLFM   95 (262)
T ss_pred             CEEEEecccCCCHHHHH
Confidence            99999999999998765

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=98.92  E-value=4.9e-09  Score=102.51  Aligned_cols=89  Identities=21%  Similarity=0.373  Sum_probs=74.7

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|++|.||+|... +|+.||+|.+..........+.+.+|++++++++|+||+++++++..++..++|+|
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFE   81 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEe
Confidence            46777899999999999999985 68899999986543322334678899999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |++ ++|.+++
T Consensus        82 ~~~-~~l~~~~   91 (294)
T PLN00009         82 YLD-LDLKKHM   91 (294)
T ss_pred             ccc-ccHHHHH
Confidence            996 5776654

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=98.92  E-value=2.9e-09  Score=103.53  Aligned_cols=88  Identities=23%  Similarity=0.408  Sum_probs=75.0

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|+..+.||+|+||.||+|..+ +++.||||+++.........+.+.+|++++++++|+||+++++++..++..++||||
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   81 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEY   81 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEec
Confidence            5777899999999999999985 588999999875433233356789999999999999999999999999999999999


Q ss_pred             cCCCCHhhh
Q 040888          485 YRNGSLHEF  493 (495)
Q Consensus       485 ~~~GsL~~~  493 (495)
                      ++++.+..+
T Consensus        82 ~~~~~l~~~   90 (288)
T cd07833          82 VERTLLELL   90 (288)
T ss_pred             CCCCHHHHH
Confidence            998776653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=98.92  E-value=2.8e-09  Score=101.86  Aligned_cols=80  Identities=29%  Similarity=0.538  Sum_probs=66.9

Q ss_pred             ceeccCCceEEEEEEcCC-C----------CEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          411 RLLGEGTIGRVYRAKYPD-G----------KVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~~-g----------~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      +.||+|+||.||+|...+ +          ..+++|.+.....   ....|.+|+.++++++||||++++++|.. +..+
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~   76 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHR---DSLAFFETASLMSQLSHKHLVKLYGVCVR-DENI   76 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchh---hHHHHHHHHHHHHcCCCcchhheeeEEec-CCcE
Confidence            368999999999999854 3          2577787654322   15789999999999999999999999988 7789


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +|+||+++|+|.+++
T Consensus        77 lv~e~~~~~~L~~~l   91 (259)
T cd05037          77 MVEEYVKFGPLDVFL   91 (259)
T ss_pred             EEEEcCCCCcHHHHH
Confidence            999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=98.91  E-value=7e-09  Score=99.82  Aligned_cols=89  Identities=25%  Similarity=0.452  Sum_probs=73.5

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc---cccHHHHHHHHHHHhcCCCCCcceEEEEEEe--CCEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ---RANSESFSEIVQNISRIRHTNIAELVGFCSE--QGHNI  479 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~---~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~--~~~~~  479 (495)
                      +|...+.||+|+||.||++... ++..||+|++......   ....+.+.+|++++++++||||+++++++..  ....+
T Consensus         3 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   82 (266)
T cd06651           3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLT   82 (266)
T ss_pred             CccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEE
Confidence            6778899999999999999874 5889999998643221   1123568899999999999999999999875  35678


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +++||+++++|.+++
T Consensus        83 l~~e~~~~~~L~~~l   97 (266)
T cd06651          83 IFMEYMPGGSVKDQL   97 (266)
T ss_pred             EEEeCCCCCcHHHHH
Confidence            999999999998876

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.91  E-value=1.9e-10  Score=113.18  Aligned_cols=87  Identities=23%  Similarity=0.440  Sum_probs=72.0

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-CCCcceEEEEEEeCC-EEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-HTNIAELVGFCSEQG-HNILIY  482 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~-~~~lv~  482 (495)
                      .|...+.||.|.||.||+|+- ..|..||||+++..-.. ..+---.|||+.|+++. |||||+|...+.+.+ ..++||
T Consensus        11 RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s-~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~fVf   89 (538)
T KOG0661|consen   11 RYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYS-WEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFVF   89 (538)
T ss_pred             HHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhcc-HHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEeeeH
Confidence            455678899999999999987 56889999999765332 22233578999999998 999999999999988 899999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      |||+. +|.+.+
T Consensus        90 E~Md~-NLYqLm  100 (538)
T KOG0661|consen   90 EFMDC-NLYQLM  100 (538)
T ss_pred             Hhhhh-hHHHHH
Confidence            99975 788765

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=98.91  E-value=4.2e-09  Score=100.91  Aligned_cols=80  Identities=20%  Similarity=0.434  Sum_probs=66.6

Q ss_pred             eccCCceEEEEEEcC---CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCCC
Q 040888          413 LGEGTIGRVYRAKYP---DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGS  489 (495)
Q Consensus       413 iG~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~Gs  489 (495)
                      ||+|+||.||+|.+.   .+..||+|.+..... ....+.|.+|++++++++|+||++++++|. .+..++|+||+++|+
T Consensus         3 ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~-~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~~~~~lv~e~~~~~~   80 (257)
T cd05115           3 LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENE-KSVRDEMMREAEIMHQLDNPYIVRMIGVCE-AEALMLVMEMASGGP   80 (257)
T ss_pred             cCCCCcccEEEEEEecCCCceeEEEEEcccccC-hHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-CCCeEEEEEeCCCCC
Confidence            899999999999763   355799999875432 223467999999999999999999999885 456789999999999


Q ss_pred             Hhhhh
Q 040888          490 LHEFL  494 (495)
Q Consensus       490 L~~~L  494 (495)
                      |.+++
T Consensus        81 L~~~l   85 (257)
T cd05115          81 LNKFL   85 (257)
T ss_pred             HHHHH
Confidence            99876

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=98.91  E-value=4e-09  Score=104.79  Aligned_cols=89  Identities=16%  Similarity=0.226  Sum_probs=72.3

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCC-CCCcceEEEEEEeCCEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIR-HTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~lv~  482 (495)
                      +|...+.||+|+||.||+|... +|+.||+|.+...... ....+.+..|.+++..+. |++|+++.+++...+..++||
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence            3666789999999999999874 6889999999754321 123456788888888885 577888999999989999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        81 Ey~~~g~L~~~i   92 (323)
T cd05615          81 EYVNGGDLMYHI   92 (323)
T ss_pred             cCCCCCcHHHHH
Confidence            999999998875

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=98.91  E-value=8.5e-09  Score=98.08  Aligned_cols=89  Identities=26%  Similarity=0.522  Sum_probs=76.8

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|...+.||+|++|.||+++.. +++.|++|.+..........+.+.+|++++++++|+|++++++++...+..++|+||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEY   80 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEec
Confidence            3566789999999999999875 588999999976543223456799999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++++|.+++
T Consensus        81 ~~~~~L~~~~   90 (254)
T cd06627          81 AENGSLRQII   90 (254)
T ss_pred             CCCCcHHHHH
Confidence            9999998875

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.91  E-value=2.1e-09  Score=110.48  Aligned_cols=92  Identities=22%  Similarity=0.358  Sum_probs=77.0

Q ss_pred             hccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccc-ccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEE
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHF-QRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~  479 (495)
                      ..++|....+||+|+||+|+.+.++ +++.+|||+++++.. ++...+..+.|-+++.-. +||.|++|+.++.+.+..+
T Consensus       366 ~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~  445 (694)
T KOG0694|consen  366 TLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLF  445 (694)
T ss_pred             cccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEE
Confidence            4568889999999999999999995 588999999988743 334456777787776655 6999999999999999999


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +||||+.|||+..+.
T Consensus       446 fvmey~~Ggdm~~~~  460 (694)
T KOG0694|consen  446 FVMEYVAGGDLMHHI  460 (694)
T ss_pred             EEEEecCCCcEEEEE
Confidence            999999999965543

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=98.90  E-value=5.3e-09  Score=104.11  Aligned_cols=84  Identities=13%  Similarity=0.269  Sum_probs=70.5

Q ss_pred             ceeccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          411 RLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      +.||+|+||.||+|... +++.||+|++....... ...+.+.+|+.++.++ +||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            46999999999999974 58899999997643221 2245688899999888 699999999999999999999999999


Q ss_pred             CCHhhhh
Q 040888          488 GSLHEFL  494 (495)
Q Consensus       488 GsL~~~L  494 (495)
                      |+|.+++
T Consensus        81 ~~L~~~~   87 (327)
T cd05617          81 GDLMFHM   87 (327)
T ss_pred             CcHHHHH
Confidence            9998765

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=98.90  E-value=3.8e-09  Score=100.98  Aligned_cols=82  Identities=26%  Similarity=0.408  Sum_probs=70.1

Q ss_pred             ceeccCCceEEEEEEcCC--CC--EEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecC
Q 040888          411 RLLGEGTIGRVYRAKYPD--GK--VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYR  486 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~~--g~--~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~  486 (495)
                      +.||+|++|.||+|.+.+  ++  .||+|.+...... ...+.|.+|++++++++||||+++++++.. ...++|+||++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~   78 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLS-DIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAP   78 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccH-HHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecC
Confidence            368999999999998743  33  6899999875442 345789999999999999999999999988 88899999999


Q ss_pred             CCCHhhhh
Q 040888          487 NGSLHEFL  494 (495)
Q Consensus       487 ~GsL~~~L  494 (495)
                      +|+|.+++
T Consensus        79 ~~~L~~~l   86 (257)
T cd05040          79 LGSLLDRL   86 (257)
T ss_pred             CCcHHHHH
Confidence            99999876

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=98.90  E-value=4.2e-09  Score=102.26  Aligned_cols=87  Identities=26%  Similarity=0.568  Sum_probs=73.5

Q ss_pred             CCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      +|.....||+|+||.||++...      ++..+|+|.+.....  ...+.|.+|++++++++|+||+++++++...+..+
T Consensus         6 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   83 (280)
T cd05092           6 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASE--SARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLL   83 (280)
T ss_pred             hceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCH--HHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceE
Confidence            4556789999999999999642      356889998865432  23568999999999999999999999999999999


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +|+||+++|+|.+++
T Consensus        84 lv~e~~~~~~L~~~i   98 (280)
T cd05092          84 MVFEYMRHGDLNRFL   98 (280)
T ss_pred             EEEecCCCCCHHHHH
Confidence            999999999998876

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=98.90  E-value=5e-09  Score=101.13  Aligned_cols=84  Identities=27%  Similarity=0.573  Sum_probs=69.4

Q ss_pred             ceeccCCceEEEEEEcCC-CC--EEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEEEEecC
Q 040888          411 RLLGEGTIGRVYRAKYPD-GK--VLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILIYDYYR  486 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~~-g~--~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv~ey~~  486 (495)
                      ++||+|+||.||+|...+ +.  .+|+|.+..... ....+.|.+|++++.++ +||||++++++|...+..++||||++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~   79 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS-KDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAP   79 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCC-HHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCC
Confidence            368999999999999853 44  468888864321 22346789999999999 89999999999999999999999999


Q ss_pred             CCCHhhhhC
Q 040888          487 NGSLHEFLH  495 (495)
Q Consensus       487 ~GsL~~~L~  495 (495)
                      +|+|.++++
T Consensus        80 ~~~L~~~i~   88 (270)
T cd05047          80 HGNLLDFLR   88 (270)
T ss_pred             CCcHHHHHH
Confidence            999998763

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=98.90  E-value=5.3e-09  Score=99.89  Aligned_cols=89  Identities=22%  Similarity=0.374  Sum_probs=73.4

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe-CCEEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE-QGHNILIYD  483 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~-~~~~~lv~e  483 (495)
                      +|...+.||+|++|.||++... +++.||+|++..........+.+.+|++++++++|+|++++.+.+.. +...++|||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMG   80 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEec
Confidence            3667789999999999999974 57899999997543323335678899999999999999999988764 446789999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        81 ~~~~~~l~~~l   91 (257)
T cd08223          81 FCEGGDLYHKL   91 (257)
T ss_pred             ccCCCcHHHHH
Confidence            99999998876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=98.90  E-value=8.3e-10  Score=110.68  Aligned_cols=76  Identities=25%  Similarity=0.517  Sum_probs=66.8

Q ss_pred             cceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCCC
Q 040888          410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGS  489 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~Gs  489 (495)
                      .+-+|+|+-|.||+|++ .++.||||+++..+         ..+|+-|++++|+||+.+.|+|......++|||||+.|-
T Consensus       129 LeWlGSGaQGAVF~Grl-~netVAVKKV~elk---------ETdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~Gq  198 (904)
T KOG4721|consen  129 LEWLGSGAQGAVFLGRL-HNETVAVKKVRELK---------ETDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQGQ  198 (904)
T ss_pred             hhhhccCcccceeeeec-cCceehhHHHhhhh---------hhhHHHHHhccCcceeeEeeeecCCceeEEeeecccccc
Confidence            57799999999999999 45679999986432         246888999999999999999999999999999999999


Q ss_pred             HhhhhC
Q 040888          490 LHEFLH  495 (495)
Q Consensus       490 L~~~L~  495 (495)
                      |.+.|+
T Consensus       199 L~~VLk  204 (904)
T KOG4721|consen  199 LYEVLK  204 (904)
T ss_pred             HHHHHh
Confidence            998874

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.90  E-value=3.9e-09  Score=104.06  Aligned_cols=90  Identities=20%  Similarity=0.407  Sum_probs=73.6

Q ss_pred             HhccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc------------ccHHHHHHHHHHHhcCCCCCcceE
Q 040888          402 TATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR------------ANSESFSEIVQNISRIRHTNIAEL  468 (495)
Q Consensus       402 ~~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~------------~~~~~f~~e~~~l~~l~H~niv~l  468 (495)
                      +..+.|.....||+|.||.|-+|.. .+++.||||.+.+.....            ...+...+||.+|++++|||||+|
T Consensus        94 k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~L  173 (576)
T KOG0585|consen   94 KQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKL  173 (576)
T ss_pred             eehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEE
Confidence            3456788899999999999999987 469999999997642210            113578899999999999999999


Q ss_pred             EEEEEeC--CEEEEEEEecCCCCHh
Q 040888          469 VGFCSEQ--GHNILIYDYYRNGSLH  491 (495)
Q Consensus       469 ~g~~~~~--~~~~lv~ey~~~GsL~  491 (495)
                      +.+..+.  +..|||+|||..|.+.
T Consensus       174 iEvLDDP~s~~~YlVley~s~G~v~  198 (576)
T KOG0585|consen  174 IEVLDDPESDKLYLVLEYCSKGEVK  198 (576)
T ss_pred             EEeecCcccCceEEEEEeccCCccc
Confidence            9998764  5689999999998764

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=98.90  E-value=5.4e-09  Score=99.80  Aligned_cols=84  Identities=27%  Similarity=0.589  Sum_probs=73.1

Q ss_pred             ceeccCCceEEEEEEcCC----CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecC
Q 040888          411 RLLGEGTIGRVYRAKYPD----GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYR  486 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~~----g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~  486 (495)
                      +.||+|+||.||+|....    +..||+|.+....... ..+.+.+|++.+.+++|+|++++++++......++|+||++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   79 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEE-ERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYME   79 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchh-HHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEecc
Confidence            468999999999999853    7889999997654322 35789999999999999999999999999999999999999


Q ss_pred             CCCHhhhhC
Q 040888          487 NGSLHEFLH  495 (495)
Q Consensus       487 ~GsL~~~L~  495 (495)
                      +|+|.++++
T Consensus        80 ~~~L~~~l~   88 (262)
T cd00192          80 GGDLLDYLR   88 (262)
T ss_pred             CCcHHHHHh
Confidence            999998863

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.90  E-value=8.7e-10  Score=112.72  Aligned_cols=152  Identities=33%  Similarity=0.492  Sum_probs=114.0

Q ss_pred             CCEeEEEcCCCCCccccccccCCCC-CCcEEECcCCCCCCC-CCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLK-SVSYLDVSNNNLKDS-IPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNL  146 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~-~L~~L~Ls~N~l~g~-~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  146 (495)
                      ..++.|++.+|.++ .+++....+. +|+.|++++|.+... .|....++|+.|++++|+++ .+|...+.+++|+.|++
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            35888999998887 4555566664 899999999998843 24444589999999999998 67776668889999999


Q ss_pred             ccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCccc
Q 040888          147 GSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGW  224 (495)
Q Consensus       147 ~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~  224 (495)
                      ++|+++ .+|.....+..|+.|.+++|.+. .++..+.++.++..|.+.+|++...+..++.++ ++.|++++|.++..
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i  270 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI  270 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccccc
Confidence            999988 56665556667888888888644 456667777888888888888776555555555 78888888877643

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.90  E-value=1.5e-09  Score=106.16  Aligned_cols=84  Identities=26%  Similarity=0.499  Sum_probs=68.4

Q ss_pred             CCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhc--CCCCCcceEEEEEEeCC----EEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISR--IRHTNIAELVGFCSEQG----HNI  479 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~--l~H~niv~l~g~~~~~~----~~~  479 (495)
                      .....+.||+|.||.||+|.+ .|..||||.+...     .++.+.+|.++-..  +||+||..+++.=..+.    +.+
T Consensus       212 qI~L~e~IGkGRyGEVwrG~w-rGe~VAVKiF~sr-----dE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLw  285 (513)
T KOG2052|consen  212 QIVLQEIIGKGRFGEVWRGRW-RGEDVAVKIFSSR-----DERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLW  285 (513)
T ss_pred             eeEEEEEecCccccceeeccc-cCCceEEEEeccc-----chhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEE
Confidence            345578999999999999999 5678999998643     25677888887765  69999999887765432    689


Q ss_pred             EEEEecCCCCHhhhhC
Q 040888          480 LIYDYYRNGSLHEFLH  495 (495)
Q Consensus       480 lv~ey~~~GsL~~~L~  495 (495)
                      ||.||-|+|||+|||.
T Consensus       286 LvTdYHe~GSL~DyL~  301 (513)
T KOG2052|consen  286 LVTDYHEHGSLYDYLN  301 (513)
T ss_pred             EeeecccCCcHHHHHh
Confidence            9999999999999984

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=98.90  E-value=2.1e-09  Score=103.55  Aligned_cols=83  Identities=27%  Similarity=0.482  Sum_probs=70.0

Q ss_pred             ceeccCCceEEEEEEcCC-------CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          411 RLLGEGTIGRVYRAKYPD-------GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~~-------g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      +.||+|+||.||+|+..+       +..+|+|.+..... ......|.+|++++++++||||++++++|...+..++|||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   79 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGAT-DQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIME   79 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccc-hhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEe
Confidence            468999999999998742       35789998865422 1235678999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        80 ~~~~~~L~~~l   90 (269)
T cd05044          80 LMEGGDLLSYL   90 (269)
T ss_pred             ccCCCcHHHHH
Confidence            99999999876

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.90  E-value=1.6e-10  Score=107.43  Aligned_cols=130  Identities=27%  Similarity=0.316  Sum_probs=106.1

Q ss_pred             CEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcccC
Q 040888           70 SVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSN  149 (495)
Q Consensus        70 ~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N  149 (495)
                      .++.+||++|.++ .+..++.-++.++.|+||+|.+.-.-.....++|+.||||+|.++ .+-..-..+.+.+.|.|+.|
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQN  362 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhh
Confidence            4888999999987 566778889999999999999984433344489999999999998 45555567889999999999


Q ss_pred             cCCCccchhhhCCCCCcEEEccCCcCCCc-CcccccCCCCCCEEeccCCcccccc
Q 040888          150 QLNGQLSDMFQKNEKLETLDLSKNQLTGE-LPRSFASLSSLKKLYLQNNQFTGSI  203 (495)
Q Consensus       150 ~l~g~~p~~~~~l~~L~~L~ls~N~l~g~-~p~~~~~l~~L~~L~l~~N~l~g~~  203 (495)
                      .|...  +.+..+-+|..||+++|++... --..+++++.|+.+.|.+|.+.+.+
T Consensus       363 ~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  363 KIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            98632  3366778899999999999742 1246899999999999999999876

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=98.90  E-value=5.8e-09  Score=101.05  Aligned_cols=82  Identities=21%  Similarity=0.324  Sum_probs=69.8

Q ss_pred             eccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCCCH
Q 040888          413 LGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSL  490 (495)
Q Consensus       413 iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~GsL  490 (495)
                      ||+|+||+||++... +|+.+|+|.+...... ....+.+..|++++++++|||++++.+++...+..++|+||+++|+|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            699999999999874 6889999998754321 12245678899999999999999999999999999999999999999


Q ss_pred             hhhh
Q 040888          491 HEFL  494 (495)
Q Consensus       491 ~~~L  494 (495)
                      .+++
T Consensus        81 ~~~l   84 (277)
T cd05577          81 KYHI   84 (277)
T ss_pred             HHHH
Confidence            8876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=98.89  E-value=3.3e-09  Score=104.93  Aligned_cols=89  Identities=30%  Similarity=0.530  Sum_probs=73.6

Q ss_pred             cCCcccceeccCCceEEEEEEcC--------CCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeC
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP--------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQ  475 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~--------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~  475 (495)
                      ++|...+.||+|+||.||++...        ....+|+|.+..... .....++.+|++++.++ +||||++++++|...
T Consensus        12 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~   90 (314)
T cd05099          12 DRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNAT-DKDLADLISEMELMKLIGKHKNIINLLGVCTQE   90 (314)
T ss_pred             HHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCC-hHHHHHHHHHHHHHHhccCCCCeeeEEEEEccC
Confidence            45667899999999999999741        245789999875322 22345788999999999 699999999999998


Q ss_pred             CEEEEEEEecCCCCHhhhh
Q 040888          476 GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       476 ~~~~lv~ey~~~GsL~~~L  494 (495)
                      +..++|+||+++|+|.+++
T Consensus        91 ~~~~lv~e~~~~g~L~~~i  109 (314)
T cd05099          91 GPLYVIVEYAAKGNLREFL  109 (314)
T ss_pred             CceEEEEecCCCCcHHHHH
Confidence            9999999999999999886

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=98.89  E-value=5.4e-09  Score=101.52  Aligned_cols=85  Identities=21%  Similarity=0.376  Sum_probs=72.7

Q ss_pred             cccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecC
Q 040888          408 ATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYR  486 (495)
Q Consensus       408 ~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~  486 (495)
                      ...+.||+|+||.||+|... ++..+++|.+.....  ...+.|.+|++++++++|||+++++++|..++..++|+||++
T Consensus         8 ~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~   85 (282)
T cd06643           8 EIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSE--EELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCA   85 (282)
T ss_pred             HHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCH--HHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecC
Confidence            44578999999999999985 477889999865422  235678999999999999999999999999999999999999


Q ss_pred             CCCHhhhh
Q 040888          487 NGSLHEFL  494 (495)
Q Consensus       487 ~GsL~~~L  494 (495)
                      +|+|..++
T Consensus        86 ~~~l~~~~   93 (282)
T cd06643          86 GGAVDAVM   93 (282)
T ss_pred             CCcHHHHH
Confidence            99998764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=98.89  E-value=4.8e-09  Score=102.88  Aligned_cols=91  Identities=22%  Similarity=0.410  Sum_probs=73.9

Q ss_pred             HhccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC----
Q 040888          402 TATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG----  476 (495)
Q Consensus       402 ~~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~----  476 (495)
                      ...++|+..+.||+|+||.||+|... +|+.||+|+++...........+.+|++++++++|||++++++++...+    
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~   83 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD   83 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence            34567888899999999999999985 5889999999754332233457788999999999999999999997654    


Q ss_pred             ------EEEEEEEecCCCCHhhh
Q 040888          477 ------HNILIYDYYRNGSLHEF  493 (495)
Q Consensus       477 ------~~~lv~ey~~~GsL~~~  493 (495)
                            ..++|+||+++ ++..+
T Consensus        84 ~~~~~~~~~lv~e~~~~-~l~~~  105 (302)
T cd07864          84 FKKDKGAFYLVFEYMDH-DLMGL  105 (302)
T ss_pred             ccccCCcEEEEEcccCc-cHHHH
Confidence                  68899999986 55554

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=98.89  E-value=7.2e-09  Score=101.13  Aligned_cols=90  Identities=19%  Similarity=0.333  Sum_probs=74.6

Q ss_pred             hccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      ++.+|...+.||+|+||.||+|.. .++..||+|++..... ......+.+|++++++++|+||+++.+++..++..++|
T Consensus         3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv   81 (291)
T cd07870           3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTE-EGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFV   81 (291)
T ss_pred             ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCc-CCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEE
Confidence            356788889999999999999987 4688999999865432 12234678899999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      +||++ +++.+++
T Consensus        82 ~e~~~-~~l~~~~   93 (291)
T cd07870          82 FEYMH-TDLAQYM   93 (291)
T ss_pred             Eeccc-CCHHHHH
Confidence            99996 6776553

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=98.89  E-value=8.4e-09  Score=98.22  Aligned_cols=89  Identities=25%  Similarity=0.478  Sum_probs=76.8

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|...+.||+|+||.||++... ++..+|+|++..........+.+.+|++++++++|+|++++.+.+...+..++|+||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~   80 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEY   80 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEe
Confidence            3666788999999999999984 588999999976543323456789999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++++|.+++
T Consensus        81 ~~~~~L~~~l   90 (258)
T cd08215          81 ADGGDLSQKI   90 (258)
T ss_pred             cCCCcHHHHH
Confidence            9999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=98.89  E-value=7.6e-09  Score=100.54  Aligned_cols=86  Identities=33%  Similarity=0.522  Sum_probs=70.5

Q ss_pred             cccceeccCCceEEEEEEc-----CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--CEEEE
Q 040888          408 ATGRLLGEGTIGRVYRAKY-----PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ--GHNIL  480 (495)
Q Consensus       408 ~~~~~iG~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~~~l  480 (495)
                      ...+.||+|+||+||.+.+     .++..||+|.+..... ....+.|.+|++++++++||||+++.++|...  ...++
T Consensus         7 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (283)
T cd05080           7 KKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECG-QQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQL   85 (283)
T ss_pred             eeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccC-hHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEE
Confidence            5678899999999988653     3578999999875422 12356788999999999999999999998764  35789


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+++|+|.+++
T Consensus        86 v~e~~~~~~l~~~~   99 (283)
T cd05080          86 IMEYVPLGSLRDYL   99 (283)
T ss_pred             EecCCCCCCHHHHH
Confidence            99999999998875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=98.89  E-value=9.1e-09  Score=98.51  Aligned_cols=88  Identities=24%  Similarity=0.412  Sum_probs=76.7

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||+|... +++.+|+|.+.....  ...+.+.+|++++++++||||+++++++...+..+++||
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e   80 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPG--DDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVME   80 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCch--hhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEe
Confidence            46777899999999999999874 578899999875432  235788999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++++|.+++
T Consensus        81 ~~~~~~l~~~~   91 (262)
T cd06613          81 YCGGGSLQDIY   91 (262)
T ss_pred             CCCCCcHHHHH
Confidence            99999998875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=98.89  E-value=5.1e-09  Score=101.64  Aligned_cols=88  Identities=17%  Similarity=0.252  Sum_probs=70.1

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHH-HhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQN-ISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~-l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+++.. +|..||+|++...... ....++..|+.. ++..+|||++++++++..++..++|+
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~   79 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNS-QEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICM   79 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCc-HHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEh
Confidence            36777899999999999999985 6999999998754322 123455666665 66679999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      |||+ |+|.+++
T Consensus        80 e~~~-~~l~~~l   90 (283)
T cd06617          80 EVMD-TSLDKFY   90 (283)
T ss_pred             hhhc-ccHHHHH
Confidence            9997 6776654

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=98.89  E-value=4.9e-09  Score=104.42  Aligned_cols=94  Identities=20%  Similarity=0.292  Sum_probs=76.3

Q ss_pred             HHHhccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe-CCE
Q 040888          400 LLTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE-QGH  477 (495)
Q Consensus       400 ~~~~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~-~~~  477 (495)
                      +...+++|...+.||+|+||.||++... ++..||+|++..........+.+.+|++++.+++||||+++.++|.. .+.
T Consensus         5 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~   84 (328)
T cd07856           5 VFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLED   84 (328)
T ss_pred             eeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCc
Confidence            3446778999999999999999999864 68999999986543222335678899999999999999999999876 457


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++|+||+ +++|.+++
T Consensus        85 ~~lv~e~~-~~~L~~~~  100 (328)
T cd07856          85 IYFVTELL-GTDLHRLL  100 (328)
T ss_pred             EEEEeehh-ccCHHHHH
Confidence            88999999 46887765

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=98.88  E-value=6.4e-09  Score=103.40  Aligned_cols=84  Identities=19%  Similarity=0.322  Sum_probs=66.8

Q ss_pred             ceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHH-HHHhcCCCCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          411 RLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIV-QNISRIRHTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~-~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      +.||+|+||.||+|+.. +++.||+|++...... ......+..|. .++..++||||+++++++...+..++||||+++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            46999999999999985 5789999998754221 11223444444 456789999999999999999999999999999


Q ss_pred             CCHhhhh
Q 040888          488 GSLHEFL  494 (495)
Q Consensus       488 GsL~~~L  494 (495)
                      |+|.+++
T Consensus        81 ~~L~~~~   87 (325)
T cd05602          81 GELFYHL   87 (325)
T ss_pred             CcHHHHH
Confidence            9998875

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=98.88  E-value=5.5e-09  Score=101.43  Aligned_cols=87  Identities=22%  Similarity=0.436  Sum_probs=73.5

Q ss_pred             CcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEec
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYY  485 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~  485 (495)
                      |+..+.||+|++|.||+|... +|..||+|++..........+.+.+|++++++++|||++++++++..++..++||||+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~   80 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFL   80 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEecc
Confidence            445688999999999999874 6999999998754332233467889999999999999999999999999999999999


Q ss_pred             CCCCHhhhh
Q 040888          486 RNGSLHEFL  494 (495)
Q Consensus       486 ~~GsL~~~L  494 (495)
                      + ++|.+++
T Consensus        81 ~-~~l~~~~   88 (283)
T cd07835          81 D-LDLKKYM   88 (283)
T ss_pred             C-cCHHHHH
Confidence            5 6888775

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=98.88  E-value=8e-09  Score=98.52  Aligned_cols=86  Identities=28%  Similarity=0.580  Sum_probs=73.9

Q ss_pred             cccceeccCCceEEEEEEcCC-----CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          408 ATGRLLGEGTIGRVYRAKYPD-----GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       408 ~~~~~iG~G~~g~Vy~~~~~~-----g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ...+.||+|+||.||+++..+     +..||+|.+...... ...+.+..|++.+.+++|+||+++++++...+..+++|
T Consensus         2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~   80 (258)
T smart00219        2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADE-QQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVM   80 (258)
T ss_pred             cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCCh-HHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEE
Confidence            346789999999999999854     378999999765321 13568999999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        81 e~~~~~~l~~~~   92 (258)
T smart00219       81 EYMEGGDLLDYL   92 (258)
T ss_pred             eccCCCCHHHHH
Confidence            999999998876

Phosphotransferases. Tyrosine-specific kinase subfamily.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=98.88  E-value=6.5e-09  Score=103.67  Aligned_cols=86  Identities=16%  Similarity=0.204  Sum_probs=66.4

Q ss_pred             ccCCcccceeccCCceEEEEEEcC--CCCEEEEEEecCccc---ccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP--DGKVLAVKKIDSSHF---QRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~--~g~~vavK~l~~~~~---~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  478 (495)
                      .++|...+.||+|+||+||+|...  +++.||||++.....   .....+.|.+|+++|.+++|+|+|+.+..   .+..
T Consensus        17 ~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~---~~~~   93 (365)
T PRK09188         17 SARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA---TGKD   93 (365)
T ss_pred             cCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE---cCCc
Confidence            356888899999999999999874  578889998753211   11224569999999999999999963322   2457


Q ss_pred             EEEEEecCCCCHhh
Q 040888          479 ILIYDYYRNGSLHE  492 (495)
Q Consensus       479 ~lv~ey~~~GsL~~  492 (495)
                      ++||||+++++|..
T Consensus        94 ~LVmE~~~G~~L~~  107 (365)
T PRK09188         94 GLVRGWTEGVPLHL  107 (365)
T ss_pred             EEEEEccCCCCHHH
Confidence            99999999999863

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=98.88  E-value=3.4e-09  Score=110.28  Aligned_cols=93  Identities=17%  Similarity=0.355  Sum_probs=68.7

Q ss_pred             hccCCcccceeccCCceEEEEEEc-----------------CCCCEEEEEEecCccccc------------ccHHHHHHH
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKY-----------------PDGKVLAVKKIDSSHFQR------------ANSESFSEI  453 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~-----------------~~g~~vavK~l~~~~~~~------------~~~~~f~~e  453 (495)
                      ..++|...++||+|+||.||+|.+                 ..++.||||++.......            ...+.+..|
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE  222 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE  222 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence            367899999999999999999964                 235689999986532110            011234457


Q ss_pred             HHHHhcCCCCCc-----ceEEEEEEe--------CCEEEEEEEecCCCCHhhhhC
Q 040888          454 VQNISRIRHTNI-----AELVGFCSE--------QGHNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       454 ~~~l~~l~H~ni-----v~l~g~~~~--------~~~~~lv~ey~~~GsL~~~L~  495 (495)
                      +.++.+++|.++     +++++||..        .+..++|||||++|+|.++||
T Consensus       223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~  277 (507)
T PLN03224        223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALD  277 (507)
T ss_pred             HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHh
Confidence            777888877665     678888754        356899999999999999875

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=98.87  E-value=7.7e-09  Score=99.19  Aligned_cols=83  Identities=22%  Similarity=0.322  Sum_probs=71.5

Q ss_pred             eccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCCCH
Q 040888          413 LGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSL  490 (495)
Q Consensus       413 iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~GsL  490 (495)
                      ||+|+||.||+++.. +++.+|+|.+...... ....+.+.+|++++++++||||+++++++..+...++|+||+++|+|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            699999999999985 4889999998754322 12346799999999999999999999999999999999999999999


Q ss_pred             hhhhC
Q 040888          491 HEFLH  495 (495)
Q Consensus       491 ~~~L~  495 (495)
                      .++++
T Consensus        81 ~~~l~   85 (262)
T cd05572          81 WTILR   85 (262)
T ss_pred             HHHHh
Confidence            98863

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=98.87  E-value=9e-09  Score=99.12  Aligned_cols=89  Identities=24%  Similarity=0.362  Sum_probs=72.2

Q ss_pred             CCcccceeccCCceEEEEEEcCC--CCEEEEEEecCccc--------ccccHHHHHHHHHHHhc-CCCCCcceEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYPD--GKVLAVKKIDSSHF--------QRANSESFSEIVQNISR-IRHTNIAELVGFCSE  474 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~~--g~~vavK~l~~~~~--------~~~~~~~f~~e~~~l~~-l~H~niv~l~g~~~~  474 (495)
                      +|...+.||+|+||.||+|....  ++.+|+|.+.....        .....+++.+|+.++.+ ++||||++++++|..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            36667899999999999999854  77899998854321        11123557788888875 799999999999999


Q ss_pred             CCEEEEEEEecCCCCHhhhh
Q 040888          475 QGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       475 ~~~~~lv~ey~~~GsL~~~L  494 (495)
                      ++..++||||+++++|.+++
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l  100 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHF  100 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHH
Confidence            99999999999999998765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=98.87  E-value=8e-09  Score=98.84  Aligned_cols=83  Identities=25%  Similarity=0.480  Sum_probs=68.7

Q ss_pred             ceeccCCceEEEEEEcC--C--CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecC
Q 040888          411 RLLGEGTIGRVYRAKYP--D--GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYR  486 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~--~--g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~  486 (495)
                      +.||+|+||.||+|++.  +  +..+|+|.+...... ...+++.+|++++++++|+|||++++++.. +..++||||++
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~   78 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIA-AGKKEFLREASVMAQLDHPCIVRLIGVCKG-EPLMLVMELAP   78 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccch-HHHHHHHHHHHHHHhcCCCCeeeEEEEEcC-CceEEEEEeCC
Confidence            46899999999999863  2  368999998765432 235679999999999999999999998864 56789999999


Q ss_pred             CCCHhhhhC
Q 040888          487 NGSLHEFLH  495 (495)
Q Consensus       487 ~GsL~~~L~  495 (495)
                      +|+|.++++
T Consensus        79 ~~~L~~~l~   87 (257)
T cd05060          79 LGPLLKYLK   87 (257)
T ss_pred             CCcHHHHHH
Confidence            999998873

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=98.87  E-value=2.4e-09  Score=107.16  Aligned_cols=95  Identities=21%  Similarity=0.385  Sum_probs=79.5

Q ss_pred             HHhccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccc-cHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCE
Q 040888          401 LTATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRA-NSESFSEIVQNISRI-RHTNIAELVGFCSEQGH  477 (495)
Q Consensus       401 ~~~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~-~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~  477 (495)
                      .+..++|...+.||+|+|++||+|+. ..++.+|||++.+...-+. ..+-...|-+.|.++ .||.||+|+--|.++..
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~s  148 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEES  148 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccc
Confidence            44567888999999999999999987 4699999999987643221 123455777888888 99999999999999999


Q ss_pred             EEEEEEecCCCCHhhhhC
Q 040888          478 NILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L~  495 (495)
                      .|+|+||++||+|.++|+
T Consensus       149 LYFvLe~A~nGdll~~i~  166 (604)
T KOG0592|consen  149 LYFVLEYAPNGDLLDLIK  166 (604)
T ss_pred             eEEEEEecCCCcHHHHHH
Confidence            999999999999999874

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=98.87  E-value=8e-09  Score=102.31  Aligned_cols=84  Identities=18%  Similarity=0.310  Sum_probs=68.8

Q ss_pred             ceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhc-CCCCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          411 RLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISR-IRHTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~-l~H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      +.||+|+||.||+|+.. +|..||+|.++..... ....+.+..|.+++.. .+||||+++++++...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            46999999999999985 5889999999754221 1223456777878775 4899999999999999999999999999


Q ss_pred             CCHhhhh
Q 040888          488 GSLHEFL  494 (495)
Q Consensus       488 GsL~~~L  494 (495)
                      |+|.+++
T Consensus        81 g~L~~~i   87 (316)
T cd05620          81 GDLMFHI   87 (316)
T ss_pred             CcHHHHH
Confidence            9998765

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=98.87  E-value=4.1e-09  Score=102.38  Aligned_cols=87  Identities=28%  Similarity=0.445  Sum_probs=73.2

Q ss_pred             CcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEE
Q 040888          407 FATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~l  480 (495)
                      |...+.||+|+||.||+|...      ++..||+|++..... ....+.|.+|+.++.+++||||+++++++...+..++
T Consensus         7 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~   85 (283)
T cd05091           7 VRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAE-GPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSM   85 (283)
T ss_pred             HHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCC-HHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEE
Confidence            455688999999999999863      257899999975432 2234678999999999999999999999999999999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ++||+++++|.+++
T Consensus        86 ~~e~~~~~~l~~~l   99 (283)
T cd05091          86 IFSYCSHSDLHEFL   99 (283)
T ss_pred             EEEcCCCCcHHHHH
Confidence            99999999998876

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=98.86  E-value=3.9e-09  Score=100.63  Aligned_cols=89  Identities=21%  Similarity=0.398  Sum_probs=76.2

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|+..+.||+|+||.||+++. .++..+|+|++...........++.+|++++++++|+||+++.+++......++|+||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEY   80 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehh
Confidence            366678999999999999986 4688999999876543333356788999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++++|.+++
T Consensus        81 ~~~~~L~~~~   90 (256)
T cd08530          81 APFGDLSKAI   90 (256)
T ss_pred             cCCCCHHHHH
Confidence            9999998875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=1.3e-09  Score=79.76  Aligned_cols=59  Identities=42%  Similarity=0.581  Sum_probs=28.4

Q ss_pred             CCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCc
Q 040888          140 ELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQ  198 (495)
Q Consensus       140 ~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~  198 (495)
                      +|++|+|++|+|+...+..|.++++|++|++++|+++...|..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444444444443333444444555555555555544444445555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=1.5e-09  Score=79.33  Aligned_cols=61  Identities=41%  Similarity=0.597  Sum_probs=55.6

Q ss_pred             CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcC
Q 040888          115 PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQL  175 (495)
Q Consensus       115 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  175 (495)
                      |+|++|+|++|+|+...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5799999999999966667889999999999999999988888999999999999999986

...

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=98.86  E-value=6.5e-09  Score=101.58  Aligned_cols=89  Identities=19%  Similarity=0.342  Sum_probs=73.9

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--CEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ--GHNILI  481 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~~~lv  481 (495)
                      ++|...+.||+|+||.||+|..+ +++.+|+|.++...........+.+|++++.+++||||+++++++...  ...++|
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv   84 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMV   84 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEE
Confidence            46777899999999999999985 588999999975433222345678899999999999999999999887  789999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      +||++ ++|.+++
T Consensus        85 ~e~~~-~~L~~~~   96 (293)
T cd07843          85 MEYVE-HDLKSLM   96 (293)
T ss_pred             ehhcC-cCHHHHH
Confidence            99997 4887664

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=98.86  E-value=3.6e-09  Score=105.82  Aligned_cols=89  Identities=25%  Similarity=0.494  Sum_probs=72.3

Q ss_pred             cCCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeC-C
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQ-G  476 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~-~  476 (495)
                      +.|...+.||+|+||.||+|...      .++.||+|+++.... ....+.+.+|++++.++ +|+||++++++|... .
T Consensus         7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~-~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~   85 (337)
T cd05054           7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGAT-ASEYKALMTELKILIHIGHHLNVVNLLGACTKPGG   85 (337)
T ss_pred             HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCC-HHHHHHHHHHHHHHHhhccCcchhheeeeEecCCC
Confidence            35777899999999999999742      357899999875432 22245688899999999 899999999998754 4


Q ss_pred             EEEEEEEecCCCCHhhhh
Q 040888          477 HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L  494 (495)
                      ..++++||+++|+|.++|
T Consensus        86 ~~~~v~ey~~~~~L~~~i  103 (337)
T cd05054          86 PLMVIVEYCKFGNLSNYL  103 (337)
T ss_pred             CEEEEEecCCCCCHHHHH
Confidence            678999999999999876

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=98.86  E-value=7.9e-09  Score=102.87  Aligned_cols=84  Identities=21%  Similarity=0.300  Sum_probs=71.1

Q ss_pred             ceeccC--CceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          411 RLLGEG--TIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       411 ~~iG~G--~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      ..||+|  +||+||+++. .+|+.||+|.+..........+.+.+|+.++..++||||++++++|..++..++|+||+++
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~   83 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY   83 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence            346666  8999999997 4699999999875443333356789999999999999999999999999999999999999


Q ss_pred             CCHhhhh
Q 040888          488 GSLHEFL  494 (495)
Q Consensus       488 GsL~~~L  494 (495)
                      |+|.+++
T Consensus        84 ~~l~~~l   90 (328)
T cd08226          84 GSANSLL   90 (328)
T ss_pred             CCHHHHH
Confidence            9998876

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=98.86  E-value=7.3e-09  Score=99.96  Aligned_cols=88  Identities=28%  Similarity=0.536  Sum_probs=70.5

Q ss_pred             CcccceeccCCceEEEEEEcC----CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC------
Q 040888          407 FATGRLLGEGTIGRVYRAKYP----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG------  476 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~------  476 (495)
                      |...+.||+|+||.||+|.+.    .++.||||.+..........+++.+|++++++++||||+++++++...+      
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            345678999999999999863    3678999998764333333567899999999999999999999986542      


Q ss_pred             EEEEEEEecCCCCHhhhh
Q 040888          477 HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L  494 (495)
                      ..++++||+++|+|.+++
T Consensus        81 ~~~~~~~~~~~~~l~~~~   98 (273)
T cd05074          81 IPMVILPFMKHGDLHTFL   98 (273)
T ss_pred             ceEEEEecCCCCcHHHHH
Confidence            247899999999998764

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=98.86  E-value=7.5e-09  Score=101.13  Aligned_cols=89  Identities=21%  Similarity=0.373  Sum_probs=72.6

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-CCCcceEEEEEEeCCE-----
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-HTNIAELVGFCSEQGH-----  477 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~-----  477 (495)
                      ++|+..+.||+|+||.||+|... +++.||+|+++...........+.+|++++++++ |+||+++++++...+.     
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence            35777899999999999999974 6899999998754332223467889999999995 6999999999987665     


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++||||+++ +|.+++
T Consensus        81 ~~lv~e~~~~-~l~~~~   96 (295)
T cd07837          81 LYLVFEYLDS-DLKKFM   96 (295)
T ss_pred             EEEEeeccCc-CHHHHH
Confidence            7999999985 787764

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=98.86  E-value=3.5e-10  Score=105.07  Aligned_cols=84  Identities=21%  Similarity=0.384  Sum_probs=74.9

Q ss_pred             CcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEec
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYY  485 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~  485 (495)
                      |+....+|+|+||.|||+.++ .|++||+|.+..+.    ..++...|+.+|.+.+.|.+|+.+|.|......++|||||
T Consensus        35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~s----DLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYC  110 (502)
T KOG0574|consen   35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDT----DLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYC  110 (502)
T ss_pred             HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccc----hHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhc
Confidence            455688999999999999985 59999999987542    3678999999999999999999999999999999999999


Q ss_pred             CCCCHhhhh
Q 040888          486 RNGSLHEFL  494 (495)
Q Consensus       486 ~~GsL~~~L  494 (495)
                      --|++.+.+
T Consensus       111 GAGSiSDI~  119 (502)
T KOG0574|consen  111 GAGSISDIM  119 (502)
T ss_pred             CCCcHHHHH
Confidence            999998765

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=98.86  E-value=8.2e-09  Score=99.44  Aligned_cols=90  Identities=27%  Similarity=0.453  Sum_probs=76.1

Q ss_pred             HhccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCC---
Q 040888          402 TATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQG---  476 (495)
Q Consensus       402 ~~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~---  476 (495)
                      .++++|...+.||+|++|.||+|... +++.+++|.+.....   ..+.|.+|+++++++ +|+||+++++++....   
T Consensus         3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~   79 (275)
T cd06608           3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED---EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPG   79 (275)
T ss_pred             CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch---hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCC
Confidence            35678888999999999999999985 578999999875432   246789999999999 7999999999997644   


Q ss_pred             ---EEEEEEEecCCCCHhhhh
Q 040888          477 ---HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ---~~~lv~ey~~~GsL~~~L  494 (495)
                         ..++||||+++++|.+++
T Consensus        80 ~~~~~~lv~e~~~~~~L~~~~  100 (275)
T cd06608          80 NDDQLWLVMELCGGGSVTDLV  100 (275)
T ss_pred             cceEEEEEEEcCCCCcHHHHH
Confidence               478999999999998765

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=98.86  E-value=1.4e-08  Score=97.70  Aligned_cols=90  Identities=26%  Similarity=0.437  Sum_probs=73.5

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccc---ccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--CEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHF---QRANSESFSEIVQNISRIRHTNIAELVGFCSEQ--GHN  478 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~~  478 (495)
                      .+|...+.||+|+||.||+|.. .++..||+|.+.....   .....+.|.+|++++++++|+||+++++++...  ...
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            4677889999999999999987 4589999998753211   112245788999999999999999999998764  457


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++++||+++++|.+++
T Consensus        82 ~~v~e~~~~~~L~~~~   97 (264)
T cd06653          82 SIFVEYMPGGSIKDQL   97 (264)
T ss_pred             EEEEEeCCCCcHHHHH
Confidence            8999999999998875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=98.86  E-value=1.1e-08  Score=99.63  Aligned_cols=88  Identities=20%  Similarity=0.416  Sum_probs=67.2

Q ss_pred             CCcccceeccCCceEEEEEEc-C-CCCEEEEEEecCcccccccHHHHHHHHHHHhcC---CCCCcceEEEEEEe-----C
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-P-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI---RHTNIAELVGFCSE-----Q  475 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l---~H~niv~l~g~~~~-----~  475 (495)
                      +|...+.||+|+||.||+|+. . +++.||+|+++...........+.+|++++..+   +||||++++++|..     .
T Consensus         2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~   81 (290)
T cd07862           2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRE   81 (290)
T ss_pred             CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCC
Confidence            567788999999999999986 3 478899999875433222344566777776655   79999999999863     3


Q ss_pred             CEEEEEEEecCCCCHhhhh
Q 040888          476 GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       476 ~~~~lv~ey~~~GsL~~~L  494 (495)
                      ...++|+||++ |+|.+++
T Consensus        82 ~~~~lv~e~~~-~~l~~~~   99 (290)
T cd07862          82 TKLTLVFEHVD-QDLTTYL   99 (290)
T ss_pred             CcEEEEEccCC-CCHHHHH
Confidence            45789999996 6887765

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=98.85  E-value=2.2e-09  Score=102.84  Aligned_cols=83  Identities=29%  Similarity=0.528  Sum_probs=68.6

Q ss_pred             ceeccCCceEEEEEEcCC--------CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          411 RLLGEGTIGRVYRAKYPD--------GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~~--------g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      +.||+|+||.||+|....        ...+|+|.+....  ....+.|.+|+.++..++|||++++++++..++..++||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   78 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSH--RNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQ   78 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchh--HHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEE
Confidence            358999999999998632        2347888875432  123467899999999999999999999999988999999


Q ss_pred             EecCCCCHhhhhC
Q 040888          483 DYYRNGSLHEFLH  495 (495)
Q Consensus       483 ey~~~GsL~~~L~  495 (495)
                      ||+++|+|.++++
T Consensus        79 e~~~~g~L~~~l~   91 (258)
T cd05078          79 EYVKFGSLDTYLK   91 (258)
T ss_pred             ecCCCCcHHHHHh
Confidence            9999999998873

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=98.85  E-value=5.8e-09  Score=100.55  Aligned_cols=87  Identities=25%  Similarity=0.445  Sum_probs=71.0

Q ss_pred             CCcccceeccCCceEEEEEEcCC----CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYPD----GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~~----g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      +|...+.||+|+||.||+|...+    ...||+|....... ....+.|.+|+.++++++||||++++++|.. +..++|
T Consensus         7 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~-~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~lv   84 (270)
T cd05056           7 DITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTS-PSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPVWIV   84 (270)
T ss_pred             hceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCC-HHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCcEEE
Confidence            45667899999999999998743    24689998865431 2235679999999999999999999999875 457899


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      +||+++|+|.+++
T Consensus        85 ~e~~~~~~L~~~l   97 (270)
T cd05056          85 MELAPLGELRSYL   97 (270)
T ss_pred             EEcCCCCcHHHHH
Confidence            9999999999876

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=98.85  E-value=9.5e-09  Score=100.23  Aligned_cols=89  Identities=25%  Similarity=0.357  Sum_probs=74.2

Q ss_pred             CCcccceeccCCceEEEEEEc----CCCCEEEEEEecCcccc--cccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKY----PDGKVLAVKKIDSSHFQ--RANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~----~~g~~vavK~l~~~~~~--~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~  478 (495)
                      +|...+.||+|+||.||++..    .+|..||+|++......  ....+.+.+|++++.++ +|+||+++++++..+...
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            356678999999999999986    36889999998754221  12246788999999999 599999999999998999


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++|+||+++|+|.+++
T Consensus        81 ~lv~e~~~~~~L~~~l   96 (290)
T cd05613          81 HLILDYINGGELFTHL   96 (290)
T ss_pred             EEEEecCCCCcHHHHH
Confidence            9999999999999876

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=98.85  E-value=6.4e-09  Score=103.80  Aligned_cols=88  Identities=27%  Similarity=0.498  Sum_probs=72.9

Q ss_pred             CCcccceeccCCceEEEEEEcC--------CCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCC
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP--------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQG  476 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~--------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~  476 (495)
                      +|...+.||+|+||.||++...        .+..||+|.+..... ....+++.+|++++.++ +||||++++++|..++
T Consensus        13 ~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~   91 (334)
T cd05100          13 RLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDAT-DKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG   91 (334)
T ss_pred             HeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccC-HHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCC
Confidence            4566789999999999999742        123789998874322 22356799999999999 8999999999999999


Q ss_pred             EEEEEEEecCCCCHhhhh
Q 040888          477 HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L  494 (495)
                      ..++++||+++|+|.+++
T Consensus        92 ~~~lv~e~~~~g~L~~~l  109 (334)
T cd05100          92 PLYVLVEYASKGNLREYL  109 (334)
T ss_pred             ceEEEEecCCCCcHHHHH
Confidence            999999999999999876

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=98.85  E-value=9e-09  Score=99.91  Aligned_cols=96  Identities=22%  Similarity=0.435  Sum_probs=78.6

Q ss_pred             cHHHHHHhccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEE
Q 040888          396 SMADLLTATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCS  473 (495)
Q Consensus       396 ~~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~  473 (495)
                      ++.++..+.+.|...+.||+|+||.||+|.. .+++.+|+|.+....   ....++..|+.++.++ +|+||+++++++.
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~---~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~   83 (282)
T cd06636           7 DLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE---DEEEEIKLEINMLKKYSHHRNIATYYGAFI   83 (282)
T ss_pred             hhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh---HHHHHHHHHHHHHHHhcCCCcEEEEeeehh
Confidence            4455666677888889999999999999998 458899999986532   1245688899999998 7999999999986


Q ss_pred             e------CCEEEEEEEecCCCCHhhhh
Q 040888          474 E------QGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       474 ~------~~~~~lv~ey~~~GsL~~~L  494 (495)
                      .      ....+++|||+++|+|.+++
T Consensus        84 ~~~~~~~~~~~~iv~e~~~~~~L~~~~  110 (282)
T cd06636          84 KKSPPGHDDQLWLVMEFCGAGSVTDLV  110 (282)
T ss_pred             cccccCCCCEEEEEEEeCCCCcHHHHH
Confidence            3      45679999999999998875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=98.85  E-value=1e-08  Score=98.10  Aligned_cols=85  Identities=27%  Similarity=0.536  Sum_probs=71.7

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe-CCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE-QGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~-~~~~~lv~e  483 (495)
                      .+|...+.||+|+||.||++..+ |..||+|.++...    ..+.|.+|+.++++++|+|++++++++.. ++..++|+|
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~~----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE   80 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEEc-CCcEEEEEeCCCc----hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEE
Confidence            35677899999999999999874 7789999986432    24679999999999999999999998754 456899999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        81 ~~~~~~L~~~~   91 (256)
T cd05082          81 YMAKGSLVDYL   91 (256)
T ss_pred             CCCCCcHHHHH
Confidence            99999999876

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=98.84  E-value=9.3e-09  Score=99.82  Aligned_cols=87  Identities=23%  Similarity=0.418  Sum_probs=68.7

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCC----EEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGK----VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~----~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~l  480 (495)
                      +|...+.||+|+||.||+|.+. ++.    .+++|.+..... ....+++..|+..+++++||||+++++++. ....++
T Consensus         8 ~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~-~~~~~~   85 (279)
T cd05111           8 ELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSG-RQTFQEITDHMLAMGSLDHAYIVRLLGICP-GASLQL   85 (279)
T ss_pred             hceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccc-hHHHHHHHHHHHHHhcCCCCCcceEEEEEC-CCccEE
Confidence            5666789999999999999873 444    477787753321 122457888888999999999999999885 455678


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ++||+++|+|.+++
T Consensus        86 i~e~~~~gsL~~~l   99 (279)
T cd05111          86 VTQLSPLGSLLDHV   99 (279)
T ss_pred             EEEeCCCCcHHHHH
Confidence            99999999999886

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=98.84  E-value=7.4e-09  Score=98.89  Aligned_cols=84  Identities=26%  Similarity=0.557  Sum_probs=71.3

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      ++|...+.||+|+||.||++.. .++.||+|.++...    ..+.|.+|+.++.+++|||++++.+++..+ ..++||||
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~----~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~e~   79 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV----TAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVMEL   79 (254)
T ss_pred             HHceeeeeeccCCCCceEeccc-CCCceEEEeecCcc----hHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEEEC
Confidence            3466789999999999999975 67789999986532    246789999999999999999999998765 46899999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        80 ~~~~~L~~~l   89 (254)
T cd05083          80 MSKGNLVNFL   89 (254)
T ss_pred             CCCCCHHHHH
Confidence            9999999876

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=98.83  E-value=4.9e-09  Score=101.86  Aligned_cols=87  Identities=21%  Similarity=0.394  Sum_probs=72.6

Q ss_pred             CcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEec
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYY  485 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~  485 (495)
                      |...+.||+|+||.||+|... +|..||+|++............+.+|++++++++|+||+++++++...+..++|+||+
T Consensus         2 y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   81 (284)
T cd07839           2 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEYC   81 (284)
T ss_pred             ceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEecC
Confidence            566788999999999999984 6899999998754332223456788999999999999999999999999999999999


Q ss_pred             CCCCHhhhh
Q 040888          486 RNGSLHEFL  494 (495)
Q Consensus       486 ~~GsL~~~L  494 (495)
                      + |+|.+++
T Consensus        82 ~-~~l~~~~   89 (284)
T cd07839          82 D-QDLKKYF   89 (284)
T ss_pred             C-CCHHHHH
Confidence            7 5777654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=98.83  E-value=1e-08  Score=98.35  Aligned_cols=83  Identities=25%  Similarity=0.493  Sum_probs=67.2

Q ss_pred             ceeccCCceEEEEEEcC----CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe-CCEEEEEEEec
Q 040888          411 RLLGEGTIGRVYRAKYP----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE-QGHNILIYDYY  485 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~-~~~~~lv~ey~  485 (495)
                      +.||+|+||.||+|...    ++..||+|++..... ....+.|.+|+.+++.++|||+++++++|.. ++..++|+||+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~   79 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITD-LEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYM   79 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCC-HHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecC
Confidence            46899999999999863    245799999854321 1235678899999999999999999998864 45678999999


Q ss_pred             CCCCHhhhh
Q 040888          486 RNGSLHEFL  494 (495)
Q Consensus       486 ~~GsL~~~L  494 (495)
                      ++|+|.+++
T Consensus        80 ~~~~L~~~~   88 (262)
T cd05058          80 KHGDLRNFI   88 (262)
T ss_pred             CCCCHHHHH
Confidence            999999886

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=98.83  E-value=1.3e-08  Score=102.77  Aligned_cols=89  Identities=19%  Similarity=0.243  Sum_probs=71.7

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC------
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG------  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~------  476 (495)
                      .++|...+.||+|+||.||++... +|..||||++..........+.+.+|+.++..++||||+++++++...+      
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   99 (359)
T cd07876          20 LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQ   99 (359)
T ss_pred             hhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccc
Confidence            467888899999999999999874 5899999999754322233567889999999999999999999986543      


Q ss_pred             EEEEEEEecCCCCHhhh
Q 040888          477 HNILIYDYYRNGSLHEF  493 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~  493 (495)
                      ..++||||+++ +|.+.
T Consensus       100 ~~~lv~e~~~~-~l~~~  115 (359)
T cd07876         100 DVYLVMELMDA-NLCQV  115 (359)
T ss_pred             eeEEEEeCCCc-CHHHH
Confidence            46899999975 55544

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=98.83  E-value=1.1e-08  Score=99.17  Aligned_cols=89  Identities=19%  Similarity=0.443  Sum_probs=72.1

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCC----EEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGK----VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~----~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      .+|...+.||+|+||.||+|.. +++.    .||+|.+..... ....+++.+|+.++..++|+||++++++|... ..+
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~-~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~   84 (279)
T cd05109           7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTS-PKANKEILDEAYVMAGVGSPYVCRLLGICLTS-TVQ   84 (279)
T ss_pred             hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCC-HHHHHHHHHHHHHHHhcCCCCCceEEEEEcCC-CcE
Confidence            4567789999999999999986 3444    489999865432 22356789999999999999999999999754 467


Q ss_pred             EEEEecCCCCHhhhhC
Q 040888          480 LIYDYYRNGSLHEFLH  495 (495)
Q Consensus       480 lv~ey~~~GsL~~~L~  495 (495)
                      +++||+++|+|.++++
T Consensus        85 l~~~~~~~g~l~~~l~  100 (279)
T cd05109          85 LVTQLMPYGCLLDYVR  100 (279)
T ss_pred             EEEEcCCCCCHHHHHh
Confidence            9999999999998763

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=98.83  E-value=1.2e-08  Score=100.42  Aligned_cols=88  Identities=27%  Similarity=0.396  Sum_probs=72.3

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ..|...+.||+|+||.||+|+.. +++.||+|++...... ....+++.+|++++++++|||++++.++|..++..++|+
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~   94 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVM   94 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEH
Confidence            34667789999999999999874 6899999998643221 122457889999999999999999999999999999999


Q ss_pred             EecCCCCHhhh
Q 040888          483 DYYRNGSLHEF  493 (495)
Q Consensus       483 ey~~~GsL~~~  493 (495)
                      ||++ |++.++
T Consensus        95 e~~~-g~l~~~  104 (307)
T cd06607          95 EYCL-GSASDI  104 (307)
T ss_pred             HhhC-CCHHHH
Confidence            9997 566554

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=98.82  E-value=8.6e-09  Score=101.11  Aligned_cols=84  Identities=21%  Similarity=0.299  Sum_probs=72.2

Q ss_pred             ccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          409 TGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       409 ~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      ....||+|+||.||++... +++.||+|.+.....  ...+.+.+|+..+..++||||+++++++..++..++|+||+++
T Consensus        25 ~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~--~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~  102 (297)
T cd06659          25 NYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQ--QRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQG  102 (297)
T ss_pred             hhhhcCCCCceeEEEEEEcCCCCEEEEEEEEeccc--chHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCC
Confidence            3457999999999999874 689999999865432  2356788999999999999999999999999999999999999


Q ss_pred             CCHhhhh
Q 040888          488 GSLHEFL  494 (495)
Q Consensus       488 GsL~~~L  494 (495)
                      |+|.+++
T Consensus       103 ~~L~~~~  109 (297)
T cd06659         103 GALTDIV  109 (297)
T ss_pred             CCHHHHH
Confidence            9998764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=98.81  E-value=2.8e-08  Score=94.10  Aligned_cols=87  Identities=25%  Similarity=0.440  Sum_probs=76.3

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|...+.||+|++|.||++... ++..+++|++.....  ...+.+.+|++.+++++|+|++++++++..+...++++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~   78 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK--EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEF   78 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccch--hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEec
Confidence            3566789999999999999985 688999999976532  2357899999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++++|.+++
T Consensus        79 ~~~~~L~~~~   88 (253)
T cd05122          79 CSGGSLKDLL   88 (253)
T ss_pred             CCCCcHHHHH
Confidence            9999998875

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.81  E-value=1.4e-09  Score=109.51  Aligned_cols=86  Identities=27%  Similarity=0.407  Sum_probs=70.7

Q ss_pred             CcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccc-cHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          407 FATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRA-NSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~-~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      |+..+.||.|+||.||-|.. .+..+||||++.-...+.. .-++...||..|.+++|||+|...|||..+...||||||
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEY  107 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEY  107 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHH
Confidence            44567899999999999987 5688999999976543221 235789999999999999999999999999999999999


Q ss_pred             cCCCCHhhh
Q 040888          485 YRNGSLHEF  493 (495)
Q Consensus       485 ~~~GsL~~~  493 (495)
                      |-| +-.+.
T Consensus       108 ClG-SAsDl  115 (948)
T KOG0577|consen  108 CLG-SASDL  115 (948)
T ss_pred             Hhc-cHHHH
Confidence            964 54444

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=98.81  E-value=7.4e-09  Score=101.29  Aligned_cols=83  Identities=23%  Similarity=0.301  Sum_probs=71.9

Q ss_pred             cceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCC
Q 040888          410 GRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNG  488 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~G  488 (495)
                      ...||+|+||.||++.. .++..||||++.....  ...+.+.+|+..+++++|+||+++++++...+..++||||++++
T Consensus        27 ~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~  104 (292)
T cd06658          27 FIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQ--QRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGG  104 (292)
T ss_pred             hhcccCCCCeEEEEEEECCCCCEEEEEEEecchH--HHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCCC
Confidence            46699999999999987 4688999999865332  23567899999999999999999999999999999999999999


Q ss_pred             CHhhhh
Q 040888          489 SLHEFL  494 (495)
Q Consensus       489 sL~~~L  494 (495)
                      +|.+++
T Consensus       105 ~L~~~~  110 (292)
T cd06658         105 ALTDIV  110 (292)
T ss_pred             cHHHHH
Confidence            998875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=98.80  E-value=1.7e-08  Score=99.41  Aligned_cols=90  Identities=28%  Similarity=0.424  Sum_probs=72.4

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--CEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ--GHNIL  480 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~~~l  480 (495)
                      .++|...+.||+|+||.||+|... +|+.||+|+++...........+.+|++++.+++|+||+++++++...  +..++
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFL   85 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEE
Confidence            457888899999999999999984 589999999875432222234567899999999999999999999765  46799


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      |+||+++ +|.+++
T Consensus        86 v~e~~~~-~l~~~l   98 (309)
T cd07845          86 VMEYCEQ-DLASLL   98 (309)
T ss_pred             EEecCCC-CHHHHH
Confidence            9999974 776654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.80  E-value=3.3e-09  Score=108.50  Aligned_cols=159  Identities=31%  Similarity=0.475  Sum_probs=121.1

Q ss_pred             CcccEEecCCCEe---EEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC-C--CCcEEECcCCcCCCCcch
Q 040888           60 HWKGITCSGSSVT---EIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP-P--NLKHLDLSENQFSGTVPY  133 (495)
Q Consensus        60 ~w~gv~c~~~~v~---~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~-~--~L~~L~Ls~N~l~g~~p~  133 (495)
                      .+.+..+....+.   .+++..+.+...+. .+..++.++.|++.+|.++. +|.... .  +|+.|++++|++. .+|.
T Consensus        81 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~  157 (394)
T COG4886          81 SSLDGSENLLNLLPLPSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPS  157 (394)
T ss_pred             ccccccccccCCCCCceeeccccccccCch-hhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhh
Confidence            4445555544555   58888888754443 35556889999999999984 444443 3  8999999999998 7777


Q ss_pred             hccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-Cc
Q 040888          134 SISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LD  212 (495)
Q Consensus       134 ~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~  212 (495)
                      .+..+++|+.|++++|+++ .+|.....++.|+.|++++|+++ .+|.....+..|++|++++|.+.-.+..+..+. +.
T Consensus       158 ~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~  235 (394)
T COG4886         158 PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLS  235 (394)
T ss_pred             hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhccccc
Confidence            8899999999999999998 55665557889999999999998 778777677779999999996544444444444 67


Q ss_pred             EEEeecCCCcc
Q 040888          213 ELNVENNKFSG  223 (495)
Q Consensus       213 ~l~l~~N~l~g  223 (495)
                      .+.+.+|++..
T Consensus       236 ~l~l~~n~~~~  246 (394)
T COG4886         236 GLELSNNKLED  246 (394)
T ss_pred             ccccCCceeee
Confidence            77788888764

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=98.80  E-value=6.4e-09  Score=100.54  Aligned_cols=90  Identities=22%  Similarity=0.397  Sum_probs=76.6

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCC-CCCcceEEEEEEeCCEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIR-HTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~lv  481 (495)
                      ++|...+.||+|+||.||+++.. +++.||+|++...... ....+.+.+|++++.+++ |+||+++++++..++..++|
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   80 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV   80 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence            35777889999999999999985 6899999998754321 122467889999999998 99999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+++|+|.+++
T Consensus        81 ~e~~~~~~L~~~l   93 (280)
T cd05581          81 LEYAPNGELLQYI   93 (280)
T ss_pred             EcCCCCCcHHHHH
Confidence            9999999998876

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=98.80  E-value=2.5e-08  Score=97.17  Aligned_cols=86  Identities=23%  Similarity=0.315  Sum_probs=73.5

Q ss_pred             CcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEec
Q 040888          407 FATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYY  485 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~  485 (495)
                      |...+.||+|++|.||++.. .+++.+++|++.....  ...+.+.+|+.++++++|+|++++++++...+..++|+||+
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~--~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~   98 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQ--QRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFL   98 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccch--hHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEecc
Confidence            44457999999999999986 4688999999864322  22456889999999999999999999999999999999999


Q ss_pred             CCCCHhhhh
Q 040888          486 RNGSLHEFL  494 (495)
Q Consensus       486 ~~GsL~~~L  494 (495)
                      ++++|.+++
T Consensus        99 ~~~~L~~~~  107 (285)
T cd06648          99 EGGALTDIV  107 (285)
T ss_pred             CCCCHHHHH
Confidence            999998875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=98.80  E-value=1.8e-08  Score=97.80  Aligned_cols=87  Identities=25%  Similarity=0.492  Sum_probs=72.5

Q ss_pred             CcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--CEEEEEEE
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ--GHNILIYD  483 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~~~lv~e  483 (495)
                      |...+.||+|+||.||+|+.. +++.+|+|++..........+.+.+|++++.+++|+|++++++++...  +..++|+|
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   80 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE   80 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence            345688999999999999985 588999999986532223346788999999999999999999999988  78999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++ +|.+++
T Consensus        81 ~~~~-~l~~~~   90 (287)
T cd07840          81 YMDH-DLTGLL   90 (287)
T ss_pred             cccc-cHHHHH
Confidence            9975 887764

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>PHA03212 serine/threonine kinase US3; Provisional

Probab=98.80  E-value=1.9e-08  Score=102.70  Aligned_cols=82  Identities=18%  Similarity=0.219  Sum_probs=71.0

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .++|...+.||+|+||.||+|.. .+++.||+|...        .+.+.+|++++++++|||||++++++......++|+
T Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~--------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~  162 (391)
T PHA03212         91 KAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ--------RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLIL  162 (391)
T ss_pred             cCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh--------hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEE
Confidence            35799999999999999999987 468899999753        234678999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+. |+|.+++
T Consensus       163 e~~~-~~L~~~l  173 (391)
T PHA03212        163 PRYK-TDLYCYL  173 (391)
T ss_pred             ecCC-CCHHHHH
Confidence            9995 6887664

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=98.79  E-value=1.8e-08  Score=98.52  Aligned_cols=83  Identities=24%  Similarity=0.336  Sum_probs=71.9

Q ss_pred             cceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCC
Q 040888          410 GRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNG  488 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~G  488 (495)
                      ...||+|+||.||++.. .++..||||++.....  .....+.+|+.++++++|+|++++++++...+..++||||++++
T Consensus        25 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~  102 (292)
T cd06657          25 FIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQ--QRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGG  102 (292)
T ss_pred             HHHcCCCCCeEEEEEEEcCCCeEEEEEEecccch--hHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCC
Confidence            36799999999999988 4689999999864322  23567899999999999999999999999999999999999999


Q ss_pred             CHhhhh
Q 040888          489 SLHEFL  494 (495)
Q Consensus       489 sL~~~L  494 (495)
                      +|.+++
T Consensus       103 ~L~~~~  108 (292)
T cd06657         103 ALTDIV  108 (292)
T ss_pred             cHHHHH
Confidence            998765

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=98.79  E-value=2.5e-08  Score=98.79  Aligned_cols=87  Identities=30%  Similarity=0.437  Sum_probs=71.8

Q ss_pred             CcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      |...+.||+|+||.||+++.. ++..||+|++...... ....+.+.+|++++++++|||+++++++|..++..++||||
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  106 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEY  106 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeC
Confidence            556788999999999999974 6889999998654221 12245788999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      ++ |+|.+.+
T Consensus       107 ~~-g~l~~~~  115 (317)
T cd06635         107 CL-GSASDLL  115 (317)
T ss_pred             CC-CCHHHHH
Confidence            97 5776654

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.79  E-value=3.9e-09  Score=99.15  Aligned_cols=93  Identities=27%  Similarity=0.405  Sum_probs=80.6

Q ss_pred             cHHHHHHhccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEE
Q 040888          396 SMADLLTATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCS  473 (495)
Q Consensus       396 ~~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~  473 (495)
                      +++|+-+-|     .++||+|+|+.|-.|+. .+|..+|||++.+..  ...+....+|++++... .|+||++|+.++.
T Consensus        74 ~F~d~YkLt-----~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~--gHsR~RvfREVe~f~~Cqgh~nilqLiefFE  146 (463)
T KOG0607|consen   74 KFEDMYKLT-----SELLGEGAYASVQTCVSIQTGKEYAVKIIDKQP--GHSRSRVFREVETFYQCQGHKNILQLIEFFE  146 (463)
T ss_pred             hHHHHHHhH-----HHHhcCccceeeeeeeeeccchhhhhhhhhcCC--chHHHHHHHHHHHHHHhcCCccHHHHHHHhc
Confidence            478887777     48899999999999985 679999999998752  33466788999999988 6999999999999


Q ss_pred             eCCEEEEEEEecCCCCHhhhhC
Q 040888          474 EQGHNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       474 ~~~~~~lv~ey~~~GsL~~~L~  495 (495)
                      ++...|||||-|.+|.|..+|+
T Consensus       147 dd~~FYLVfEKm~GGplLshI~  168 (463)
T KOG0607|consen  147 DDTRFYLVFEKMRGGPLLSHIQ  168 (463)
T ss_pred             ccceEEEEEecccCchHHHHHH
Confidence            9999999999999999988864

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=98.78  E-value=2.1e-08  Score=100.50  Aligned_cols=91  Identities=15%  Similarity=0.254  Sum_probs=73.0

Q ss_pred             hccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC-----
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG-----  476 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~-----  476 (495)
                      ..++|...+.||+|+||.||++.. .++..||||++..........+.+.+|++++.+++||||+++++++...+     
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07880          13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRF   92 (343)
T ss_pred             cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccccc
Confidence            456788889999999999999986 46899999998643222223456889999999999999999999987653     


Q ss_pred             -EEEEEEEecCCCCHhhhh
Q 040888          477 -HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 -~~~lv~ey~~~GsL~~~L  494 (495)
                       ..++||||+ +++|.+++
T Consensus        93 ~~~~lv~e~~-~~~l~~~~  110 (343)
T cd07880          93 HDFYLVMPFM-GTDLGKLM  110 (343)
T ss_pred             ceEEEEEecC-CCCHHHHH
Confidence             358999999 67887664

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=98.77  E-value=2.4e-08  Score=100.22  Aligned_cols=99  Identities=15%  Similarity=0.214  Sum_probs=78.6

Q ss_pred             ccHHHHHHhccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEE
Q 040888          395 FSMADLLTATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCS  473 (495)
Q Consensus       395 ~~~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~  473 (495)
                      ....++..++++|...+.||+|+||.||+|.. .+++.||+|++..........+.+.+|++++.+++||||+++.+++.
T Consensus         7 ~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~   86 (345)
T cd07877           7 ELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFT   86 (345)
T ss_pred             hHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeee
Confidence            34567777889999999999999999999986 56889999999754322223456889999999999999999999886


Q ss_pred             eC------CEEEEEEEecCCCCHhhhh
Q 040888          474 EQ------GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       474 ~~------~~~~lv~ey~~~GsL~~~L  494 (495)
                      ..      ...++++|++ +++|.+++
T Consensus        87 ~~~~~~~~~~~~lv~~~~-~~~L~~~~  112 (345)
T cd07877          87 PARSLEEFNDVYLVTHLM-GADLNNIV  112 (345)
T ss_pred             ecccccccccEEEEehhc-ccCHHHHH
Confidence            43      2367888876 77887654

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=98.77  E-value=2.3e-08  Score=98.36  Aligned_cols=89  Identities=18%  Similarity=0.424  Sum_probs=70.9

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC-------
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG-------  476 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~-------  476 (495)
                      ++|...+.||+|+||.||+|... +++.||||++............+.+|++++++++||||++++++|...+       
T Consensus        12 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   91 (310)
T cd07865          12 SKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYK   91 (310)
T ss_pred             hheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCCC
Confidence            46778899999999999999974 5899999998654322223445678999999999999999999997654       


Q ss_pred             -EEEEEEEecCCCCHhhhh
Q 040888          477 -HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 -~~~lv~ey~~~GsL~~~L  494 (495)
                       ..++||||+++ +|.+++
T Consensus        92 ~~~~lv~e~~~~-~l~~~l  109 (310)
T cd07865          92 GSFYLVFEFCEH-DLAGLL  109 (310)
T ss_pred             ceEEEEEcCCCc-CHHHHH
Confidence             34899999974 776654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=98.76  E-value=1.4e-08  Score=97.22  Aligned_cols=82  Identities=21%  Similarity=0.354  Sum_probs=70.6

Q ss_pred             eccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCCCH
Q 040888          413 LGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSL  490 (495)
Q Consensus       413 iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~GsL  490 (495)
                      ||+|+||.||+++.. +|+.+++|.+...... ....+.+.+|++++.+++|+||+++++.+..+...++|+||+++|+|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            689999999999986 4899999998754321 12356788999999999999999999999999999999999999999


Q ss_pred             hhhh
Q 040888          491 HEFL  494 (495)
Q Consensus       491 ~~~L  494 (495)
                      .+++
T Consensus        81 ~~~l   84 (265)
T cd05579          81 ASLL   84 (265)
T ss_pred             HHHH
Confidence            8875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=98.76  E-value=1.9e-09  Score=100.90  Aligned_cols=91  Identities=24%  Similarity=0.353  Sum_probs=74.4

Q ss_pred             ccCCcccceeccCCceEEEEEEcC---C--CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe-CCE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP---D--GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE-QGH  477 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~---~--g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~-~~~  477 (495)
                      ...|.....||+|.||.||+|+-.   +  ...+|+|+++......+....-.+|+.++++++|||+|.|..++.. +..
T Consensus        23 l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~  102 (438)
T KOG0666|consen   23 LFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKK  102 (438)
T ss_pred             HHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCce
Confidence            445777889999999999999753   2  2378999998764444446678899999999999999999999987 778


Q ss_pred             EEEEEEecCCCCHhhhhC
Q 040888          478 NILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L~  495 (495)
                      .+++|||.+. ||.+.||
T Consensus       103 v~l~fdYAEh-DL~~II~  119 (438)
T KOG0666|consen  103 VWLLFDYAEH-DLWHIIK  119 (438)
T ss_pred             EEEEehhhhh-hHHHHHH
Confidence            8999999986 7877664

>PTZ00036 glycogen synthase kinase; Provisional

Probab=98.76  E-value=2.2e-08  Score=103.84  Aligned_cols=84  Identities=18%  Similarity=0.368  Sum_probs=66.7

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC-------
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ-------  475 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~-------  475 (495)
                      ..+|...+.||+|+||.||+|... +++.||||++....      ....+|+.++++++|||||++.+++...       
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~------~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~  138 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP------QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEK  138 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc------chHHHHHHHHHhcCCCCCcceeeeEeecccccCCC
Confidence            457888999999999999999974 68899999885431      2345799999999999999999987542       


Q ss_pred             -CEEEEEEEecCCCCHhhhh
Q 040888          476 -GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       476 -~~~~lv~ey~~~GsL~~~L  494 (495)
                       ...++||||+++ +|.+++
T Consensus       139 ~~~l~lvmE~~~~-~l~~~~  157 (440)
T PTZ00036        139 NIFLNVVMEFIPQ-TVHKYM  157 (440)
T ss_pred             ceEEEEEEecCCc-cHHHHH
Confidence             246689999985 665543

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=98.76  E-value=3.4e-08  Score=97.41  Aligned_cols=87  Identities=30%  Similarity=0.490  Sum_probs=70.9

Q ss_pred             CcccceeccCCceEEEEEEcC---CCCEEEEEEecCccc-ccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--CEEEE
Q 040888          407 FATGRLLGEGTIGRVYRAKYP---DGKVLAVKKIDSSHF-QRANSESFSEIVQNISRIRHTNIAELVGFCSEQ--GHNIL  480 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~---~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~~~l  480 (495)
                      |...+.||+|+||.||+|+..   ++..||+|.+..... .....+.+.+|++++.+++||||+++++++...  +..++
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   81 (316)
T cd07842           2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYL   81 (316)
T ss_pred             ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEE
Confidence            566788999999999999984   478999999976431 122346778899999999999999999999988  78999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+++ +|.+++
T Consensus        82 v~e~~~~-~l~~~~   94 (316)
T cd07842          82 LFDYAEH-DLWQII   94 (316)
T ss_pred             EEeCCCc-CHHHHH
Confidence            9999975 565543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=98.76  E-value=2e-08  Score=98.75  Aligned_cols=88  Identities=19%  Similarity=0.452  Sum_probs=70.2

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCC----EEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGK----VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~----~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      ++|...+.||+|+||.||+|... +|.    .||+|.+..... .....+|.+|+.++++++||||++++|+|... ..+
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~   84 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTG-PKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQ   84 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCC-HHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-Cce
Confidence            35666789999999999999863 343    578888865422 12234788999999999999999999999764 467


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +++||+++|+|.+++
T Consensus        85 ~v~e~~~~g~l~~~~   99 (303)
T cd05110          85 LVTQLMPHGCLLDYV   99 (303)
T ss_pred             eeehhcCCCCHHHHH
Confidence            899999999998875

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=98.75  E-value=1.8e-08  Score=100.99  Aligned_cols=91  Identities=15%  Similarity=0.237  Sum_probs=72.6

Q ss_pred             hccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC------
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ------  475 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~------  475 (495)
                      ..+.|...+.||+|+||.||+|.. .++..||||++..........+.+.+|++++.+++||||+++++++...      
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07878          13 VPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENF   92 (343)
T ss_pred             hhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccccccc
Confidence            456788889999999999999987 4688999999875432222345678999999999999999999988643      


Q ss_pred             CEEEEEEEecCCCCHhhhh
Q 040888          476 GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       476 ~~~~lv~ey~~~GsL~~~L  494 (495)
                      ...++++|++ +++|.+++
T Consensus        93 ~~~~~~~~~~-~~~l~~~~  110 (343)
T cd07878          93 NEVYLVTNLM-GADLNNIV  110 (343)
T ss_pred             CcEEEEeecC-CCCHHHHH
Confidence            3468999988 67887764

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=98.75  E-value=3.2e-08  Score=96.32  Aligned_cols=87  Identities=24%  Similarity=0.445  Sum_probs=66.6

Q ss_pred             CcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcC---CCCCcceEEEEEEeC-----CE
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI---RHTNIAELVGFCSEQ-----GH  477 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l---~H~niv~l~g~~~~~-----~~  477 (495)
                      |...+.||+|+||.||+|... +++.||+|.+............+.+|++++.++   +||||+++++++...     ..
T Consensus         2 y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~   81 (288)
T cd07863           2 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETK   81 (288)
T ss_pred             ceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCce
Confidence            566789999999999999875 688999999875432222234566777777655   799999999998652     35


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++||||++ ++|.+++
T Consensus        82 ~~lv~e~~~-~~l~~~~   97 (288)
T cd07863          82 VTLVFEHVD-QDLRTYL   97 (288)
T ss_pred             EEEEEcccc-cCHHHHH
Confidence            789999998 4787765

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=98.74  E-value=2.6e-08  Score=97.08  Aligned_cols=89  Identities=26%  Similarity=0.359  Sum_probs=73.3

Q ss_pred             CCcccceeccCCceEEEEEEc----CCCCEEEEEEecCcccc--cccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKY----PDGKVLAVKKIDSSHFQ--RANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~----~~g~~vavK~l~~~~~~--~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~  478 (495)
                      +|...+.||+|+||.||+++.    .++..||||.+......  ....+.+.+|++++.++ +|+||+++.+.+..++..
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~   80 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKL   80 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEE
Confidence            356678999999999999975    35788999998753221  12245688999999999 599999999999999999


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++||||+++|+|.+++
T Consensus        81 ~lv~e~~~~~~L~~~~   96 (288)
T cd05583          81 HLILDYVNGGELFTHL   96 (288)
T ss_pred             EEEEecCCCCcHHHHH
Confidence            9999999999998875

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=98.74  E-value=2.2e-08  Score=100.05  Aligned_cols=90  Identities=21%  Similarity=0.363  Sum_probs=72.1

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeC--CEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQ--GHNI  479 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~--~~~~  479 (495)
                      .++|...+.||+|+||.||+|... ++..+|+|++............+.+|+.++.++ +||||++++++|...  ...+
T Consensus         6 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~   85 (337)
T cd07852           6 LRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIY   85 (337)
T ss_pred             hhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEE
Confidence            456777899999999999999975 588999999864322222345677899999999 999999999998654  3679


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +||||++ ++|.+++
T Consensus        86 lv~e~~~-~~L~~~~   99 (337)
T cd07852          86 LVFEYME-TDLHAVI   99 (337)
T ss_pred             EEecccc-cCHHHHH
Confidence            9999997 5888765

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=98.73  E-value=1.3e-08  Score=97.43  Aligned_cols=89  Identities=21%  Similarity=0.353  Sum_probs=71.7

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe-----CCEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE-----QGHNI  479 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~-----~~~~~  479 (495)
                      .|...+.||+|+||.|.+++. .+|..||+|++...-......++-.+|+++|+.++|+||+.+.+.+..     -...|
T Consensus        23 ~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvY  102 (359)
T KOG0660|consen   23 YYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVY  102 (359)
T ss_pred             eecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccceeE
Confidence            444468899999999999998 568999999997432222345778899999999999999999999876     34689


Q ss_pred             EEEEecCCCCHhhhhC
Q 040888          480 LIYDYYRNGSLHEFLH  495 (495)
Q Consensus       480 lv~ey~~~GsL~~~L~  495 (495)
                      +|+|+|+. ||++.|+
T Consensus       103 iV~elMet-DL~~iik  117 (359)
T KOG0660|consen  103 LVFELMET-DLHQIIK  117 (359)
T ss_pred             EehhHHhh-HHHHHHH
Confidence            99999954 8877653

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=98.73  E-value=3.5e-08  Score=98.89  Aligned_cols=88  Identities=17%  Similarity=0.301  Sum_probs=70.8

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC------E
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG------H  477 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~------~  477 (495)
                      ++|...+.||+|+||.||+|+. .+|+.||||++............+.+|++++.+++||||+++++++....      .
T Consensus        15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   94 (342)
T cd07879          15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQD   94 (342)
T ss_pred             cceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCce
Confidence            6788889999999999999997 46899999998754222223456889999999999999999999987542      4


Q ss_pred             EEEEEEecCCCCHhhh
Q 040888          478 NILIYDYYRNGSLHEF  493 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~  493 (495)
                      .++|+||+.. +|.++
T Consensus        95 ~~lv~e~~~~-~l~~~  109 (342)
T cd07879          95 FYLVMPYMQT-DLQKI  109 (342)
T ss_pred             EEEEeccccc-CHHHH
Confidence            5899999964 66654

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=98.72  E-value=3.9e-08  Score=99.40  Aligned_cols=89  Identities=16%  Similarity=0.231  Sum_probs=71.4

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC------C
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ------G  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~------~  476 (495)
                      .++|...+.||+|+||.||++... .++.||||++..........+.+.+|+.+++.++||||+++++++...      .
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~  102 (364)
T cd07875          23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  102 (364)
T ss_pred             hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccccccC
Confidence            467888899999999999999874 588999999975432223356788999999999999999999988643      3


Q ss_pred             EEEEEEEecCCCCHhhh
Q 040888          477 HNILIYDYYRNGSLHEF  493 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~  493 (495)
                      ..++||||+++ +|.++
T Consensus       103 ~~~lv~e~~~~-~l~~~  118 (364)
T cd07875         103 DVYIVMELMDA-NLCQV  118 (364)
T ss_pred             eEEEEEeCCCC-CHHHH
Confidence            46899999975 56554

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=98.72  E-value=3.5e-08  Score=99.36  Aligned_cols=90  Identities=17%  Similarity=0.239  Sum_probs=72.0

Q ss_pred             hccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC-----
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG-----  476 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~-----  476 (495)
                      ..++|...+.||+|+||.||++... .++.||||++..........+.+.+|+.+++.++||||+++++++....     
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   94 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEF   94 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccccc
Confidence            3467888899999999999999874 5889999999754332233567889999999999999999999986542     


Q ss_pred             -EEEEEEEecCCCCHhhh
Q 040888          477 -HNILIYDYYRNGSLHEF  493 (495)
Q Consensus       477 -~~~lv~ey~~~GsL~~~  493 (495)
                       ..++||||+++ ++.++
T Consensus        95 ~~~~lv~e~~~~-~l~~~  111 (355)
T cd07874          95 QDVYLVMELMDA-NLCQV  111 (355)
T ss_pred             ceeEEEhhhhcc-cHHHH
Confidence             46899999975 56554

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=98.71  E-value=2.2e-08  Score=105.95  Aligned_cols=87  Identities=22%  Similarity=0.408  Sum_probs=70.7

Q ss_pred             CCcccceeccCCceEEEEEEcCCC-CEEEEEEecCcccccccHHHHHHHHHHHhcCC-CCCcceEEE-EEEeC------C
Q 040888          406 NFATGRLLGEGTIGRVYRAKYPDG-KVLAVKKIDSSHFQRANSESFSEIVQNISRIR-HTNIAELVG-FCSEQ------G  476 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~~g-~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g-~~~~~------~  476 (495)
                      .+...+.|.+|||+.||.+....+ ..+|+|++-...  ....+...+||++|+.++ |+|||.+++ .....      -
T Consensus        38 ~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~d--e~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~  115 (738)
T KOG1989|consen   38 RVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVND--EEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVW  115 (738)
T ss_pred             EEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCC--HHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCcee
Confidence            345578999999999999998665 999999986542  234678899999999997 999999999 33221      2


Q ss_pred             EEEEEEEecCCCCHhhhh
Q 040888          477 HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L  494 (495)
                      +.+|.||||++|.|-+++
T Consensus       116 EvllLmEyC~gg~Lvd~m  133 (738)
T KOG1989|consen  116 EVLLLMEYCKGGSLVDFM  133 (738)
T ss_pred             EEEeehhhccCCcHHHHH
Confidence            578999999999998875

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=98.71  E-value=4.7e-08  Score=97.55  Aligned_cols=84  Identities=29%  Similarity=0.391  Sum_probs=69.1

Q ss_pred             cceeccCCceEEEEEEcC-CCCEEEEEEecCcccccc------------cHHHHHHHHHHHhcCCCCCcceEEEEEEeCC
Q 040888          410 GRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRA------------NSESFSEIVQNISRIRHTNIAELVGFCSEQG  476 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~------------~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~  476 (495)
                      .+.||+|+||.||+|... +++.||||++........            ....+.+|++++++++|+||+++++++...+
T Consensus        14 ~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   93 (335)
T PTZ00024         14 GAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEGD   93 (335)
T ss_pred             hhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecCC
Confidence            477999999999999974 689999999865322110            0125778999999999999999999999999


Q ss_pred             EEEEEEEecCCCCHhhhh
Q 040888          477 HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L  494 (495)
                      ..++|+||++ |+|.+++
T Consensus        94 ~~~lv~e~~~-~~l~~~l  110 (335)
T PTZ00024         94 FINLVMDIMA-SDLKKVV  110 (335)
T ss_pred             cEEEEEeccc-cCHHHHH
Confidence            9999999997 6888765

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=98.71  E-value=3.9e-08  Score=97.93  Aligned_cols=82  Identities=21%  Similarity=0.280  Sum_probs=65.6

Q ss_pred             eccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHHHHHhcC---CCCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          413 LGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRI---RHTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       413 iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l---~H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      ||+|+||.||+|+.. +++.||||++....... .....+..|..++.+.   +||||+++++++......++||||+++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            699999999999874 58999999986532211 1223455677777665   799999999999999999999999999


Q ss_pred             CCHhhhh
Q 040888          488 GSLHEFL  494 (495)
Q Consensus       488 GsL~~~L  494 (495)
                      |+|.+++
T Consensus        81 g~L~~~l   87 (330)
T cd05586          81 GELFWHL   87 (330)
T ss_pred             ChHHHHH
Confidence            9998765

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=98.70  E-value=2.4e-08  Score=107.27  Aligned_cols=95  Identities=27%  Similarity=0.486  Sum_probs=78.6

Q ss_pred             HHHhccCCcccceeccCCceEEEEEEcC----C----CCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEE
Q 040888          400 LLTATANFATGRLLGEGTIGRVYRAKYP----D----GKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVG  470 (495)
Q Consensus       400 ~~~~t~~f~~~~~iG~G~~g~Vy~~~~~----~----g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g  470 (495)
                      ++...+++...+.+|+|.||.|++|...    .    ...||||.+...... ...+.+..|+++|..+ +|+|+|.++|
T Consensus       291 ~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~-~~~~~~~~El~~m~~~g~H~niv~llG  369 (609)
T KOG0200|consen  291 WEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASS-SEKKDLMSELNVLKELGKHPNIVNLLG  369 (609)
T ss_pred             eeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCc-HHHHHHHHHHHHHHHhcCCcchhhhee
Confidence            3344455555679999999999999863    1    457999999876543 3467899999999998 6999999999


Q ss_pred             EEEeCCEEEEEEEecCCCCHhhhhC
Q 040888          471 FCSEQGHNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       471 ~~~~~~~~~lv~ey~~~GsL~~~L~  495 (495)
                      +|..++..++|.||++.|+|.++|+
T Consensus       370 ~~t~~~~~~~v~Ey~~~G~L~~~Lr  394 (609)
T KOG0200|consen  370 ACTQDGPLYVIVEYAEHGDLLEFLR  394 (609)
T ss_pred             eeccCCceEEEEEeccCCcHHHHHH
Confidence            9999999999999999999999874

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=98.70  E-value=5.9e-08  Score=95.99  Aligned_cols=80  Identities=28%  Similarity=0.464  Sum_probs=64.8

Q ss_pred             cceeccCCceEEEEEEcC---CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe--CCEEEEEEEe
Q 040888          410 GRLLGEGTIGRVYRAKYP---DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE--QGHNILIYDY  484 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~--~~~~~lv~ey  484 (495)
                      .+.||+|+||.||+|...   +++.||+|.+.....    ...+.+|++++++++||||+++++++..  +...++|+||
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~----~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~   81 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGI----SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDY   81 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCC----cHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEec
Confidence            468999999999999864   467899999865422    3467889999999999999999999864  4567899999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++ +|.+++
T Consensus        82 ~~~-~l~~~~   90 (317)
T cd07868          82 AEH-DLWHII   90 (317)
T ss_pred             cCC-CHHHHH
Confidence            964 776654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>PHA03211 serine/threonine kinase US3; Provisional

Probab=98.70  E-value=5.4e-08  Score=101.06  Aligned_cols=82  Identities=24%  Similarity=0.299  Sum_probs=70.3

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ..+|.....||+|+||.||+|..+ .++.||||...        ...+.+|++++++++|+|||++++++..++..++||
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~--------~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~  239 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW--------YASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVL  239 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc--------ccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEE
Confidence            346888899999999999999985 48899999632        234678999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+. |+|.+++
T Consensus       240 e~~~-~~L~~~l  250 (461)
T PHA03211        240 PKYR-SDLYTYL  250 (461)
T ss_pred             EccC-CCHHHHH
Confidence            9995 7888765

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=98.70  E-value=6.5e-08  Score=95.58  Aligned_cols=80  Identities=29%  Similarity=0.466  Sum_probs=64.5

Q ss_pred             cceeccCCceEEEEEEcC---CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe--CCEEEEEEEe
Q 040888          410 GRLLGEGTIGRVYRAKYP---DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE--QGHNILIYDY  484 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~--~~~~~lv~ey  484 (495)
                      ...||+|+||.||+|+..   ++..||+|.+.....    ...+.+|++++++++||||+++++++..  +...++|+||
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~----~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~   81 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGI----SMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDY   81 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCC----cHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEee
Confidence            467999999999999974   357899999865422    3467899999999999999999999854  4567899999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++ +|.+++
T Consensus        82 ~~~-~l~~~~   90 (317)
T cd07867          82 AEH-DLWHII   90 (317)
T ss_pred             eCC-cHHHHH
Confidence            975 665543

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=98.70  E-value=8.9e-08  Score=94.66  Aligned_cols=87  Identities=28%  Similarity=0.411  Sum_probs=70.8

Q ss_pred             CcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      |...+.||+|+||+||+|+.. ++..|++|++...... ....+.+.+|++++++++|||++++++++...+..++||||
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  102 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY  102 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence            444577999999999999874 5889999998654321 12235688999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +. |++.+++
T Consensus       103 ~~-~~l~~~l  111 (313)
T cd06633         103 CL-GSASDLL  111 (313)
T ss_pred             CC-CCHHHHH
Confidence            96 5666553

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=98.70  E-value=2.7e-08  Score=99.32  Aligned_cols=89  Identities=19%  Similarity=0.269  Sum_probs=72.5

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe----CCEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE----QGHNI  479 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~----~~~~~  479 (495)
                      ++|...+.||+|+||.||+|... +|..||+|++..........+.+.+|+.++.+++||||+++++++..    ....+
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   84 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVY   84 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEE
Confidence            56778899999999999999874 58999999987543222335677889999999999999999998764    34678


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +|+||+. |+|.+++
T Consensus        85 lv~e~~~-~~l~~~~   98 (334)
T cd07855          85 VVMDLME-SDLHHII   98 (334)
T ss_pred             EEEehhh-hhHHHHh
Confidence            9999995 6888775

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=98.69  E-value=7.2e-08  Score=89.70  Aligned_cols=87  Identities=29%  Similarity=0.602  Sum_probs=75.2

Q ss_pred             CcccceeccCCceEEEEEEcCC-CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEec
Q 040888          407 FATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYY  485 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~  485 (495)
                      |...+.||+|++|.||++...+ +..+|+|.+...... ...+.+.+|++.+.+++|+|++++++++......++++||+
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~-~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~   79 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTE-KQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYC   79 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccch-HHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEecc
Confidence            3456889999999999999865 889999999765332 13568899999999999999999999999989999999999


Q ss_pred             CCCCHhhhh
Q 040888          486 RNGSLHEFL  494 (495)
Q Consensus       486 ~~GsL~~~L  494 (495)
                      ++++|.+++
T Consensus        80 ~~~~L~~~~   88 (225)
T smart00221       80 EGGDLFDYL   88 (225)
T ss_pred             CCCCHHHHH
Confidence            999998876

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=98.69  E-value=2.3e-08  Score=96.78  Aligned_cols=87  Identities=25%  Similarity=0.461  Sum_probs=73.5

Q ss_pred             CcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEec
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYY  485 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~  485 (495)
                      |+..+.||+|.+|.||+|+.. +++.+|+|.+..........+.+..|++++++++|+|++++++++...+..++|+||+
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   80 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYC   80 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCc
Confidence            344678999999999999985 5899999999765322233567889999999999999999999999999999999999


Q ss_pred             CCCCHhhhh
Q 040888          486 RNGSLHEFL  494 (495)
Q Consensus       486 ~~GsL~~~L  494 (495)
                      + ++|.+++
T Consensus        81 ~-~~l~~~i   88 (282)
T cd07829          81 D-MDLKKYL   88 (282)
T ss_pred             C-cCHHHHH
Confidence            8 5898876

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=98.69  E-value=3.9e-08  Score=97.05  Aligned_cols=83  Identities=17%  Similarity=0.216  Sum_probs=67.8

Q ss_pred             ceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCCCH
Q 040888          411 RLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSL  490 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~GsL  490 (495)
                      +.+|.|+++.||++.. +++.||||++..........+.+.+|++++++++|+||+++++++...+..+++|||+++|+|
T Consensus         8 ~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l   86 (314)
T cd08216           8 KCFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSC   86 (314)
T ss_pred             HhhcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCH
Confidence            4455666666666665 788999999976432233356799999999999999999999999999999999999999999


Q ss_pred             hhhh
Q 040888          491 HEFL  494 (495)
Q Consensus       491 ~~~L  494 (495)
                      .+++
T Consensus        87 ~~~l   90 (314)
T cd08216          87 EDLL   90 (314)
T ss_pred             HHHH
Confidence            8876

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=98.68  E-value=2.5e-08  Score=96.74  Aligned_cols=86  Identities=24%  Similarity=0.500  Sum_probs=71.0

Q ss_pred             CcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-CCCcceEEEEEEeCCEEEEEEEe
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-HTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      |...+.||+|++|.||+|+.. +++.||+|++...... .......+|+..+.+++ |+|++++++++..++..++||||
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~   79 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYS-WEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEY   79 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccc-hhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEec
Confidence            445688999999999999985 4789999998654321 12334567999999999 99999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      + +|+|.+++
T Consensus        80 ~-~~~l~~~~   88 (283)
T cd07830          80 M-EGNLYQLM   88 (283)
T ss_pred             C-CCCHHHHH
Confidence            9 78998765

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.68  E-value=1.6e-08  Score=103.89  Aligned_cols=83  Identities=31%  Similarity=0.452  Sum_probs=71.3

Q ss_pred             ceeccCCceEEEEEEcCC-CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCCC
Q 040888          411 RLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGS  489 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~Gs  489 (495)
                      -++|+|.||+||.|...+ ...+|||.+.....  ...+-..+||.+-++++|+|||+.+|.|.++++.-+.||-+|||+
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpekds--r~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGS  658 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDS--REVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGS  658 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeecccccc--hhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCc
Confidence            359999999999999854 55789999975432  234568899999999999999999999999999999999999999


Q ss_pred             HhhhhC
Q 040888          490 LHEFLH  495 (495)
Q Consensus       490 L~~~L~  495 (495)
                      |...|+
T Consensus       659 LSsLLr  664 (1226)
T KOG4279|consen  659 LSSLLR  664 (1226)
T ss_pred             HHHHHH
Confidence            988764

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=98.68  E-value=7.3e-08  Score=93.34  Aligned_cols=86  Identities=23%  Similarity=0.361  Sum_probs=68.3

Q ss_pred             CcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-CCCcceEEEEEEeC--CEEEEEE
Q 040888          407 FATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-HTNIAELVGFCSEQ--GHNILIY  482 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~--~~~~lv~  482 (495)
                      |...+.||+|+||.||+|+. .+++.||+|++....... ......+|+..+.++. |+|++++++++...  +..++|+
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~   79 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSL-EQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVF   79 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCc-hhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEE
Confidence            34467899999999999997 468899999987542221 2234567888999885 99999999999987  8899999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||++ |+|.+++
T Consensus        80 e~~~-~~l~~~l   90 (282)
T cd07831          80 ELMD-MNLYELI   90 (282)
T ss_pred             ecCC-ccHHHHH
Confidence            9997 5777664

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=98.68  E-value=9.1e-08  Score=92.91  Aligned_cols=83  Identities=22%  Similarity=0.270  Sum_probs=64.0

Q ss_pred             eeccCCceEEEEEEcC-CCCEEEEEEecCcccccc-cHHHHHHHHHH---HhcCCCCCcceEEEEEEeCCEEEEEEEecC
Q 040888          412 LLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRA-NSESFSEIVQN---ISRIRHTNIAELVGFCSEQGHNILIYDYYR  486 (495)
Q Consensus       412 ~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~-~~~~f~~e~~~---l~~l~H~niv~l~g~~~~~~~~~lv~ey~~  486 (495)
                      +||+|+||.||++... +++.+|+|.+........ ....+.+|..+   +...+|||++.+.+++...+..++||||++
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            4899999999999874 589999999875432211 12334445433   334579999999999999999999999999


Q ss_pred             CCCHhhhh
Q 040888          487 NGSLHEFL  494 (495)
Q Consensus       487 ~GsL~~~L  494 (495)
                      +|+|.+++
T Consensus        81 ~~~L~~~i   88 (279)
T cd05633          81 GGDLHYHL   88 (279)
T ss_pred             CCCHHHHH
Confidence            99998775

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=98.68  E-value=4e-08  Score=93.31  Aligned_cols=82  Identities=26%  Similarity=0.371  Sum_probs=70.8

Q ss_pred             eccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCCCH
Q 040888          413 LGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSL  490 (495)
Q Consensus       413 iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~GsL  490 (495)
                      ||+|+||.||++... +++.+|+|.+....... .....+..|++++++++|+||+++++.+..++..++||||+++++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            699999999999985 58899999987653321 1345789999999999999999999999999999999999999999


Q ss_pred             hhhh
Q 040888          491 HEFL  494 (495)
Q Consensus       491 ~~~L  494 (495)
                      .+++
T Consensus        81 ~~~l   84 (250)
T cd05123          81 FSHL   84 (250)
T ss_pred             HHHH
Confidence            8876

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=98.67  E-value=8.8e-08  Score=91.71  Aligned_cols=84  Identities=18%  Similarity=0.278  Sum_probs=65.8

Q ss_pred             ceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHH-HhcCCCCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          411 RLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQN-ISRIRHTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~-l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      +.||+|+||.||+|... +++.||||.+...... ......+..|... ....+|+|++++++++..++..++|+||+++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            46899999999999884 5889999998754321 1112334555444 4456999999999999999999999999999


Q ss_pred             CCHhhhh
Q 040888          488 GSLHEFL  494 (495)
Q Consensus       488 GsL~~~L  494 (495)
                      |+|.+++
T Consensus        82 ~~L~~~l   88 (260)
T cd05611          82 GDCASLI   88 (260)
T ss_pred             CCHHHHH
Confidence            9998876

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=98.67  E-value=4.3e-08  Score=97.96  Aligned_cols=89  Identities=18%  Similarity=0.352  Sum_probs=71.3

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC-----EE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG-----HN  478 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~-----~~  478 (495)
                      +.|...+.||+|+||.||+|.. .++..||||++............+.+|+.++.+++|+||+++++++....     ..
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~   84 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDV   84 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcE
Confidence            4577788999999999999987 46899999998754222223456788999999999999999999886542     47


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++|+||+. ++|.+++
T Consensus        85 ~lv~e~~~-~~L~~~~   99 (337)
T cd07858          85 YIVYELMD-TDLHQII   99 (337)
T ss_pred             EEEEeCCC-CCHHHHH
Confidence            99999996 6787664

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=5.1e-09  Score=102.30  Aligned_cols=155  Identities=24%  Similarity=0.267  Sum_probs=100.8

Q ss_pred             CCEeEEEcCCCCCccc--cccccCCCCCCcEEECcCCCCCCCCCCC---CCCCCcEEECcCCcCCC-CcchhccCCCCCc
Q 040888           69 SSVTEIKLSGLGLNGQ--LGYQLTNLKSVSYLDVSNNNLKDSIPYQ---LPPNLKHLDLSENQFSG-TVPYSISQMSELK  142 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~--~~~~~~~l~~L~~L~Ls~N~l~g~~p~~---~~~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~  142 (495)
                      ..|+.|||+.|-|+.-  +-.-...|++|+.|+||.|.|.-.....   ..+.|+.|.|+.+.|+. .+-..+..+++|.
T Consensus       146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~  225 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE  225 (505)
T ss_pred             CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence            5788888888877643  2344566788888888888776333222   22678888888888873 2333455678888


Q ss_pred             EEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcC-cccccCCCCCCEEeccCCcccccc-ccc------CCcc-CcE
Q 040888          143 YLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGEL-PRSFASLSSLKKLYLQNNQFTGSI-NVL------GKLP-LDE  213 (495)
Q Consensus       143 ~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~-p~~~~~l~~L~~L~l~~N~l~g~~-~~~------~~~~-L~~  213 (495)
                      .|+|..|..-+.-......+..|+.|||++|++-... -...+.++.|..|+++.+.++..- +..      ...+ |+.
T Consensus       226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~  305 (505)
T KOG3207|consen  226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEY  305 (505)
T ss_pred             HhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccccee
Confidence            8888888533333333445667888888888876321 134677888888888888776432 111      1222 888


Q ss_pred             EEeecCCCcc
Q 040888          214 LNVENNKFSG  223 (495)
Q Consensus       214 l~l~~N~l~g  223 (495)
                      |+++.|++..
T Consensus       306 L~i~~N~I~~  315 (505)
T KOG3207|consen  306 LNISENNIRD  315 (505)
T ss_pred             eecccCcccc
Confidence            8888888753

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=98.66  E-value=8.6e-08  Score=96.46  Aligned_cols=90  Identities=18%  Similarity=0.263  Sum_probs=71.9

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC------C
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ------G  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~------~  476 (495)
                      .+.|...+.||+|+||.||+|.. .+++.||+|++..........+.+.+|++++.+++|+||+++++++...      .
T Consensus        15 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   94 (353)
T cd07850          15 LKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEFQ   94 (353)
T ss_pred             hcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccccC
Confidence            45688889999999999999987 4689999999865322222345678899999999999999999998644      2


Q ss_pred             EEEEEEEecCCCCHhhhh
Q 040888          477 HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L  494 (495)
                      ..++|+||++ |+|.+++
T Consensus        95 ~~~lv~e~~~-~~l~~~~  111 (353)
T cd07850          95 DVYLVMELMD-ANLCQVI  111 (353)
T ss_pred             cEEEEEeccC-CCHHHHH
Confidence            4689999996 4777654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>PRK10345 hypothetical protein; Provisional

Probab=98.66  E-value=1.2e-07  Score=87.66  Aligned_cols=84  Identities=15%  Similarity=0.228  Sum_probs=64.8

Q ss_pred             CcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-----CCCCcceEEEEEEeCC---EE
Q 040888          407 FATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-----RHTNIAELVGFCSEQG---HN  478 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-----~H~niv~l~g~~~~~~---~~  478 (495)
                      +.....||+|+||.||.  +++....+||++.....  ...+.+.+|++.+.++     .||||++++|++.++.   ..
T Consensus         4 L~~~~~LG~G~~~~Vy~--hp~~~~k~IKv~~~~~~--~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v   79 (210)
T PRK10345          4 LSEQSPLGTGRHRKCYA--HPEDAQRCIKIVYHRGD--GGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYV   79 (210)
T ss_pred             cCCcceecCCCceEEEE--CCCCcCeEEEEEecccc--chHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEE
Confidence            34568899999999996  54333337998865432  2356799999999999     6799999999998873   43


Q ss_pred             E-EEEEe--cCCCCHhhhh
Q 040888          479 I-LIYDY--YRNGSLHEFL  494 (495)
Q Consensus       479 ~-lv~ey--~~~GsL~~~L  494 (495)
                      + +|+||  +++|+|.+++
T Consensus        80 ~~~I~e~~G~~~~tL~~~l   98 (210)
T PRK10345         80 YDVIADFDGKPSITLTEFA   98 (210)
T ss_pred             EEEEecCCCCcchhHHHHH
Confidence            4 78999  6689998876

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=98.65  E-value=3e-08  Score=94.99  Aligned_cols=88  Identities=19%  Similarity=0.252  Sum_probs=68.7

Q ss_pred             CcccceeccCCceEEEEEEcCC-CCEEEEEEecCcc---cccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          407 FATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSH---FQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~~-g~~vavK~l~~~~---~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      |...+.||+|+||.||++.... +..+++|.++...   .......++.+|+.++++++||||+++++++...+..++||
T Consensus         2 y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (260)
T cd08222           2 YILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIIT   81 (260)
T ss_pred             ceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEE
Confidence            5567889999999999998743 4445555554321   11222446778999999999999999999999888899999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++++|.+++
T Consensus        82 e~~~~~~l~~~~   93 (260)
T cd08222          82 EYCEGRDLDCKL   93 (260)
T ss_pred             EeCCCCCHHHHH
Confidence            999999998765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=98.65  E-value=8.9e-08  Score=92.95  Aligned_cols=87  Identities=23%  Similarity=0.414  Sum_probs=68.4

Q ss_pred             CcccceeccCCceEEEEEEcCC-CCEEEEEEecCcccccccHHHHHHHHHHHhcC---CCCCcceEEEEEEeCCE-----
Q 040888          407 FATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRI---RHTNIAELVGFCSEQGH-----  477 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l---~H~niv~l~g~~~~~~~-----  477 (495)
                      |+..+.||+|+||.||+|+.+. ++.+|+|++............+.+|++++.++   +|+|++++++++...+.     
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            4556889999999999999864 89999999975432222244567787776655   69999999999998776     


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .+++|||++ ++|.+++
T Consensus        81 ~~l~~e~~~-~~l~~~l   96 (287)
T cd07838          81 LTLVFEHVD-QDLATYL   96 (287)
T ss_pred             eEEEehhcc-cCHHHHH
Confidence            899999997 4787765

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=98.65  E-value=9.7e-08  Score=94.14  Aligned_cols=87  Identities=26%  Similarity=0.430  Sum_probs=71.0

Q ss_pred             CcccceeccCCceEEEEEEcC-CCCEEEEEEecCccc-ccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHF-QRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      |+..+.||+|+||.||+|... ++..+|+|.+..... .....+++.+|++++++++|+|++++.+++......++|+||
T Consensus        17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   96 (308)
T cd06634          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEY   96 (308)
T ss_pred             HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEEc
Confidence            455678999999999999974 588999999864322 112245788999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +. |++.+++
T Consensus        97 ~~-~~l~~~~  105 (308)
T cd06634          97 CL-GSASDLL  105 (308)
T ss_pred             cC-CCHHHHH
Confidence            96 6776654

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=98.64  E-value=4.8e-09  Score=113.04  Aligned_cols=97  Identities=23%  Similarity=0.292  Sum_probs=82.1

Q ss_pred             HHHHHhccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeC
Q 040888          398 ADLLTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQ  475 (495)
Q Consensus       398 ~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~  475 (495)
                      .++.-..++|...++||+|+||.|...+++ .++++|+|++.+..+- +.....|..|-++|.--..+-||.|+-.|.++
T Consensus        68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~  147 (1317)
T KOG0612|consen   68 KELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDE  147 (1317)
T ss_pred             HHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCc
Confidence            344445678999999999999999999985 5889999999875432 33456789999999999999999999999999


Q ss_pred             CEEEEEEEecCCCCHhhhh
Q 040888          476 GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       476 ~~~~lv~ey~~~GsL~~~L  494 (495)
                      ...|+|||||+||||-..+
T Consensus       148 ~~LYlVMdY~pGGDlltLl  166 (1317)
T KOG0612|consen  148 RYLYLVMDYMPGGDLLTLL  166 (1317)
T ss_pred             cceEEEEecccCchHHHHH
Confidence            9999999999999997654

>PHA03209 serine/threonine kinase US3; Provisional

Probab=98.64  E-value=8.5e-08  Score=96.71  Aligned_cols=82  Identities=15%  Similarity=0.232  Sum_probs=69.7

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ..+|...+.||+|+||.||+|... ++..||+|.....        ....|+.++.+++|+|||++++++...+..++|+
T Consensus        65 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~--------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  136 (357)
T PHA03209         65 SLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG--------TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVL  136 (357)
T ss_pred             hcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc--------ccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEE
Confidence            457999999999999999999985 4778999975432        2346899999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+. |+|.+++
T Consensus       137 e~~~-~~l~~~l  147 (357)
T PHA03209        137 PHYS-SDLYTYL  147 (357)
T ss_pred             EccC-CcHHHHH
Confidence            9995 6888765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.63  E-value=3.7e-09  Score=101.98  Aligned_cols=115  Identities=30%  Similarity=0.445  Sum_probs=94.9

Q ss_pred             CCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccC-CcCCCcCcccccCC
Q 040888          108 SIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSK-NQLTGELPRSFASL  186 (495)
Q Consensus       108 ~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~-N~l~g~~p~~~~~l  186 (495)
                      .+|..+++..+.++|..|+|+...|..|+.+.+|+.||||+|+|+-.-|++|.++.+|..|-+.+ |+|+......|++|
T Consensus        60 eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL  139 (498)
T KOG4237|consen   60 EVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL  139 (498)
T ss_pred             cCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence            68888888899999999999977778899999999999999999988899999988887765555 88986666688889


Q ss_pred             CCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCc
Q 040888          187 SSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFS  222 (495)
Q Consensus       187 ~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~  222 (495)
                      .+|+.|.+.-|++.-.. ..+..++ +..|.+-+|.+.
T Consensus       140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q  177 (498)
T KOG4237|consen  140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ  177 (498)
T ss_pred             HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh
Confidence            99999999888887666 5666666 777777777765

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=98.63  E-value=7.7e-08  Score=96.10  Aligned_cols=89  Identities=19%  Similarity=0.342  Sum_probs=71.4

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC-----E
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG-----H  477 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~-----~  477 (495)
                      .++|...+.||+|+||.||+|+. .+|+.||+|++..... ......+.+|+.++.+++|+||+++++++....     .
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   82 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEH-QTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFND   82 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEeccccc-chhHHHHHHHHHHHHhCCCCCcCchhheeecccccccce
Confidence            45788889999999999999987 4689999999864322 123456889999999999999999999876543     4


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++|+||+++ +|.+++
T Consensus        83 ~~lv~e~~~~-~l~~~~   98 (336)
T cd07849          83 VYIVQELMET-DLYKLI   98 (336)
T ss_pred             EEEEehhccc-CHHHHH
Confidence            7899999974 776553

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=98.63  E-value=6.9e-08  Score=93.49  Aligned_cols=87  Identities=23%  Similarity=0.451  Sum_probs=72.7

Q ss_pred             CcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEec
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYY  485 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~  485 (495)
                      |...+.||+|++|.||+|... +++.+++|++............+.+|++++++++|+||+++++++..++..++|+||+
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   80 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFM   80 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEecc
Confidence            344678999999999999984 6889999998765433233567889999999999999999999999999999999999


Q ss_pred             CCCCHhhhh
Q 040888          486 RNGSLHEFL  494 (495)
Q Consensus       486 ~~GsL~~~L  494 (495)
                      ++ +|.+++
T Consensus        81 ~~-~l~~~l   88 (283)
T cd05118          81 DT-DLYKLI   88 (283)
T ss_pred             CC-CHHHHH
Confidence            75 787664

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=98.61  E-value=7.5e-08  Score=94.68  Aligned_cols=90  Identities=24%  Similarity=0.411  Sum_probs=70.8

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC------
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG------  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~------  476 (495)
                      +++|...+.||+|+||.||+|+.. +++.+|+|++............+.+|++++.+++|+||+++++++....      
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            467888899999999999999974 5889999998654332222356788999999999999999999875433      


Q ss_pred             --EEEEEEEecCCCCHhhhh
Q 040888          477 --HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 --~~~lv~ey~~~GsL~~~L  494 (495)
                        ..++|+||++. ++.+++
T Consensus        87 ~~~~~lv~~~~~~-~l~~~~  105 (311)
T cd07866          87 RGSVYMVTPYMDH-DLSGLL  105 (311)
T ss_pred             CceEEEEEecCCc-CHHHHH
Confidence              46899999975 565543

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=98.61  E-value=6e-08  Score=96.47  Aligned_cols=88  Identities=19%  Similarity=0.334  Sum_probs=72.8

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC-----EEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG-----HNI  479 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~-----~~~  479 (495)
                      +|...+.||+|+||.||+|... .+..||+|++..........+.+.+|++++.+++|+||+++.+++...+     ..+
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence            3666789999999999999985 4899999998764322233567999999999999999999999998775     789


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +||||++ ++|.+++
T Consensus        81 lv~e~~~-~~l~~~l   94 (330)
T cd07834          81 IVTELME-TDLHKVI   94 (330)
T ss_pred             EEecchh-hhHHHHH
Confidence            9999998 4787765

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=98.61  E-value=1.1e-07  Score=92.44  Aligned_cols=84  Identities=19%  Similarity=0.255  Sum_probs=68.5

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-CCCcceEEEEEEeCCEEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-HTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      +|.....||+|+||.||++... +++.+|+|.+...... .....+.+|+.++.++. |+||+++++++..++..++++|
T Consensus         5 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e   83 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDE-KEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICME   83 (288)
T ss_pred             HhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccCh-HHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEe
Confidence            3445678999999999999874 5899999998754322 23567899999999996 9999999999999889999999


Q ss_pred             ecCCCCHh
Q 040888          484 YYRNGSLH  491 (495)
Q Consensus       484 y~~~GsL~  491 (495)
                      |++. ++.
T Consensus        84 ~~~~-~l~   90 (288)
T cd06616          84 LMDI-SLD   90 (288)
T ss_pred             cccC-CHH
Confidence            9864 443

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=98.60  E-value=2.3e-07  Score=90.02  Aligned_cols=83  Identities=22%  Similarity=0.269  Sum_probs=64.1

Q ss_pred             eeccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHH---HHHhcCCCCCcceEEEEEEeCCEEEEEEEecC
Q 040888          412 LLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIV---QNISRIRHTNIAELVGFCSEQGHNILIYDYYR  486 (495)
Q Consensus       412 ~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~---~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~  486 (495)
                      +||+|+||.||++... +++.||+|.+....... .....+..|.   +.++...||+|+++.+++...+..++|+||++
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            4899999999999874 58899999987543221 1122344443   34455689999999999999999999999999


Q ss_pred             CCCHhhhh
Q 040888          487 NGSLHEFL  494 (495)
Q Consensus       487 ~GsL~~~L  494 (495)
                      +|+|.+++
T Consensus        81 g~~L~~~l   88 (278)
T cd05606          81 GGDLHYHL   88 (278)
T ss_pred             CCcHHHHH
Confidence            99998765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=98.60  E-value=2.3e-07  Score=89.47  Aligned_cols=90  Identities=23%  Similarity=0.310  Sum_probs=66.7

Q ss_pred             HHHHHhccCCccccee--ccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhc-CCCCCcceEEEEEE
Q 040888          398 ADLLTATANFATGRLL--GEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISR-IRHTNIAELVGFCS  473 (495)
Q Consensus       398 ~~~~~~t~~f~~~~~i--G~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~-l~H~niv~l~g~~~  473 (495)
                      .++..-.++|...+.+  |+|+||.||++.. .++..+|+|.+.......  .     |+..... .+|||++++++++.
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~--~-----e~~~~~~~~~h~~iv~~~~~~~   79 (267)
T PHA03390          7 SELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNA--I-----EPMVHQLMKDNPNFIKLYYSVT   79 (267)
T ss_pred             HHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcch--h-----hHHHHHHhhcCCCEEEEEEEEe
Confidence            3444445566666665  9999999999987 458889999986542211  1     1211111 27999999999999


Q ss_pred             eCCEEEEEEEecCCCCHhhhh
Q 040888          474 EQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       474 ~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      ..+..++||||+++|+|.+++
T Consensus        80 ~~~~~~iv~e~~~~~~L~~~l  100 (267)
T PHA03390         80 TLKGHVLIMDYIKDGDLFDLL  100 (267)
T ss_pred             cCCeeEEEEEcCCCCcHHHHH
Confidence            999999999999999999876

>PHA03207 serine/threonine kinase US3; Provisional

Probab=98.59  E-value=1.3e-07  Score=96.55  Aligned_cols=82  Identities=16%  Similarity=0.255  Sum_probs=69.4

Q ss_pred             cCCcccceeccCCceEEEEEEcC---CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP---DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      ..|...+.||+|+||.||+|...   .+..||||.+...       +.+.+|++++.+++|||||++++++......++|
T Consensus        92 ~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-------~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv  164 (392)
T PHA03207         92 MQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-------KTPGREIDILKTISHRAIINLIHAYRWKSTVCMV  164 (392)
T ss_pred             CceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-------ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEE
Confidence            46888899999999999999763   3578999988642       2356899999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+. ++|.+++
T Consensus       165 ~e~~~-~~l~~~l  176 (392)
T PHA03207        165 MPKYK-CDLFTYV  176 (392)
T ss_pred             ehhcC-CCHHHHH
Confidence            99996 6787765

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=98.57  E-value=5.7e-08  Score=97.38  Aligned_cols=90  Identities=16%  Similarity=0.279  Sum_probs=73.1

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCE-----
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGH-----  477 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~-----  477 (495)
                      .++|.....||+|+||.||+|... ++..||||++..........+.+.+|+.++++++|+|++++.+++...+.     
T Consensus        14 ~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   93 (343)
T cd07851          14 PDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDFQ   93 (343)
T ss_pred             cCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccccc
Confidence            567888899999999999999985 58899999986532222234567889999999999999999998876654     


Q ss_pred             -EEEEEEecCCCCHhhhh
Q 040888          478 -NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 -~~lv~ey~~~GsL~~~L  494 (495)
                       .++|+||+ +++|.+++
T Consensus        94 ~~~lv~e~~-~~~L~~~~  110 (343)
T cd07851          94 DVYLVTHLM-GADLNNIV  110 (343)
T ss_pred             cEEEEEecC-CCCHHHHH
Confidence             89999999 56888765

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=98.56  E-value=2e-07  Score=91.27  Aligned_cols=87  Identities=16%  Similarity=0.337  Sum_probs=69.5

Q ss_pred             cCCcccceeccCCceEEEEEEcCC-CCEEEEEEecCcccccccHHHHHHHHHHHhcCC-CCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-HTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|+..+ ++.||||.+...... ....++.+|++.+.+.. |+||++++++|..+...++||
T Consensus        15 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~   93 (296)
T cd06618          15 NDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNK-EENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICM   93 (296)
T ss_pred             chheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCCh-HHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEe
Confidence            456678999999999999999865 899999999754321 22456777887777775 999999999999999999999


Q ss_pred             EecCCCCHhhh
Q 040888          483 DYYRNGSLHEF  493 (495)
Q Consensus       483 ey~~~GsL~~~  493 (495)
                      ||+++ ++..+
T Consensus        94 e~~~~-~l~~l  103 (296)
T cd06618          94 ELMST-CLDKL  103 (296)
T ss_pred             eccCc-CHHHH
Confidence            99864 55543

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=98.55  E-value=1.5e-07  Score=94.35  Aligned_cols=87  Identities=24%  Similarity=0.293  Sum_probs=70.7

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--------
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ--------  475 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--------  475 (495)
                      .+|...+.||+|+||.||+|.. .+|..||+|++.....  ...+.+.+|++++++++||||+++++++...        
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~--~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   82 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDP--QSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDV   82 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCC--chHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccc
Confidence            4677789999999999999987 4688999999865432  2356788999999999999999999776543        


Q ss_pred             ------CEEEEEEEecCCCCHhhhh
Q 040888          476 ------GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       476 ------~~~~lv~ey~~~GsL~~~L  494 (495)
                            ...++|+||++ ++|.+++
T Consensus        83 ~~~~~~~~~~lv~e~~~-~~L~~~~  106 (342)
T cd07854          83 GSLTELNSVYIVQEYME-TDLANVL  106 (342)
T ss_pred             ccccccceEEEEeeccc-ccHHHHH
Confidence                  35789999997 5887654

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=98.54  E-value=2.6e-07  Score=97.60  Aligned_cols=93  Identities=22%  Similarity=0.414  Sum_probs=76.2

Q ss_pred             HHHhccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEe---
Q 040888          400 LLTATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSE---  474 (495)
Q Consensus       400 ~~~~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~---  474 (495)
                      +...++-|.....||.|.+|.||+++. ++++.+|||.+.....   ..++...|.+++... .|||++..+|++..   
T Consensus        14 lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d---~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~   90 (953)
T KOG0587|consen   14 LPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTED---EEEEIELEYNMLKKYSHHPNVATFYGAFIKKDP   90 (953)
T ss_pred             CCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCcc---ccHHHHHHHHHHHhccCCCCcceEEEEEEEecC
Confidence            334456677889999999999999987 5789999999876532   346677888888876 79999999999965   


Q ss_pred             --CCEEEEEEEecCCCCHhhhhC
Q 040888          475 --QGHNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       475 --~~~~~lv~ey~~~GsL~~~L~  495 (495)
                        +++.|||||||.+|+.-+.++
T Consensus        91 ~~~DqLWLVMEfC~gGSVTDLVK  113 (953)
T KOG0587|consen   91 GNGDQLWLVMEFCGGGSVTDLVK  113 (953)
T ss_pred             CCCCeEEEEeeccCCccHHHHHh
Confidence              468999999999999988753

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=98.53  E-value=1.6e-07  Score=85.63  Aligned_cols=81  Identities=15%  Similarity=0.208  Sum_probs=57.4

Q ss_pred             cceeccCCceEEEEEEcCCCCEEEEEEecCccccccc-------HHH-----------------HHHHHHHHhcCCCCCc
Q 040888          410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRAN-------SES-----------------FSEIVQNISRIRHTNI  465 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~-------~~~-----------------f~~e~~~l~~l~H~ni  465 (495)
                      ...||+|+||.||+|..++|+.||||+++........       ...                 ...|++.+.++.|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            3679999999999999988999999999764321111       112                 2349999999988877


Q ss_pred             ceEEEEEEeCCEEEEEEEecCCCCHhh
Q 040888          466 AELVGFCSEQGHNILIYDYYRNGSLHE  492 (495)
Q Consensus       466 v~l~g~~~~~~~~~lv~ey~~~GsL~~  492 (495)
                      .....+..  ...++||||++++++..
T Consensus        82 ~~p~~~~~--~~~~iVmE~i~g~~l~~  106 (190)
T cd05147          82 PCPEPILL--KSHVLVMEFIGDDGWAA  106 (190)
T ss_pred             CCCcEEEe--cCCEEEEEEeCCCCCcc
Confidence            54333322  22389999999877643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=98.51  E-value=4.7e-08  Score=90.08  Aligned_cols=90  Identities=24%  Similarity=0.400  Sum_probs=75.6

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc------ccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCC
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR------ANSESFSEIVQNISRI-RHTNIAELVGFCSEQG  476 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~------~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~  476 (495)
                      +.|...+++|+|..+.|.+|.. ++|...|+|++.......      ...+.-.+|+.+|+++ .||+|+.+.+++..+.
T Consensus        17 ~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~s   96 (411)
T KOG0599|consen   17 AKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDA   96 (411)
T ss_pred             hhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcc
Confidence            4567788999999999999988 468899999986543211      1235567899999997 7999999999999999


Q ss_pred             EEEEEEEecCCCCHhhhh
Q 040888          477 HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L  494 (495)
                      +.++|+|.|+.|.|+++|
T Consensus        97 F~FlVFdl~prGELFDyL  114 (411)
T KOG0599|consen   97 FVFLVFDLMPRGELFDYL  114 (411)
T ss_pred             hhhhhhhhcccchHHHHh
Confidence            999999999999999987

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.50  E-value=4.9e-08  Score=92.00  Aligned_cols=91  Identities=21%  Similarity=0.304  Sum_probs=76.8

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccc-ccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHF-QRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      .++|+-.++||+|.||+|..++-+ .++.+|+|.+++.-. .+.....-..|-++|...+||.+..|.-.+...+..++|
T Consensus       167 m~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFV  246 (516)
T KOG0690|consen  167 MEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFV  246 (516)
T ss_pred             cchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEE
Confidence            356777899999999999999874 699999999987633 222234467889999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||..+|.|+-+|
T Consensus       247 MeyanGGeLf~HL  259 (516)
T KOG0690|consen  247 MEYANGGELFFHL  259 (516)
T ss_pred             EEEccCceEeeeh
Confidence            9999999998765

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=98.49  E-value=7.9e-07  Score=81.16  Aligned_cols=81  Identities=32%  Similarity=0.557  Sum_probs=70.7

Q ss_pred             eccCCceEEEEEEcCC-CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCCCHh
Q 040888          413 LGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLH  491 (495)
Q Consensus       413 iG~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~GsL~  491 (495)
                      ||+|.+|.||++...+ +..+++|++....... ..+.+.+|++.+.+++|++++++++++......++++||+++++|.
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~-~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~   79 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS-LLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLK   79 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchh-HHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHH
Confidence            6899999999999864 8899999997653211 2467999999999999999999999999999999999999999999


Q ss_pred             hhh
Q 040888          492 EFL  494 (495)
Q Consensus       492 ~~L  494 (495)
                      +++
T Consensus        80 ~~~   82 (215)
T cd00180          80 DLL   82 (215)
T ss_pred             HHH
Confidence            875

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>PTZ00284 protein kinase; Provisional

Probab=98.48  E-value=3e-07  Score=96.25  Aligned_cols=93  Identities=23%  Similarity=0.351  Sum_probs=69.9

Q ss_pred             HHHHHhccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCC------CcceEEE
Q 040888          398 ADLLTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT------NIAELVG  470 (495)
Q Consensus       398 ~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~------niv~l~g  470 (495)
                      +++...+++|...+.||+|+||+||+|... .++.||||+++....   ..+++..|++++.+++|.      +++++++
T Consensus       122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~---~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~  198 (467)
T PTZ00284        122 EDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPK---YTRDAKIEIQFMEKVRQADPADRFPLMKIQR  198 (467)
T ss_pred             CccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchh---hHHHHHHHHHHHHHHhhcCcccCcceeeeEE
Confidence            444556788999999999999999999874 588999999964321   234556677777766554      5889999


Q ss_pred             EEEeC-CEEEEEEEecCCCCHhhhh
Q 040888          471 FCSEQ-GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       471 ~~~~~-~~~~lv~ey~~~GsL~~~L  494 (495)
                      ++... ...++|||++ +++|.+++
T Consensus       199 ~~~~~~~~~~iv~~~~-g~~l~~~l  222 (467)
T PTZ00284        199 YFQNETGHMCIVMPKY-GPCLLDWI  222 (467)
T ss_pred             EEEcCCceEEEEEecc-CCCHHHHH
Confidence            88764 4678999988 67887765

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.46  E-value=2.4e-08  Score=109.20  Aligned_cols=92  Identities=26%  Similarity=0.464  Sum_probs=78.2

Q ss_pred             hccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      .+-+++..+.||.|.||.||.|+. ++|...|||.+..........+...+|+.++..++|||+|+.+|+=...+..++.
T Consensus      1233 V~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IF 1312 (1509)
T KOG4645|consen 1233 VTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIF 1312 (1509)
T ss_pred             ceeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHH
Confidence            344566788999999999999997 5688999999875433333456788999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      ||||++|+|.+.+
T Consensus      1313 MEyC~~GsLa~ll 1325 (1509)
T KOG4645|consen 1313 MEYCEGGSLASLL 1325 (1509)
T ss_pred             HHHhccCcHHHHH
Confidence            9999999998875

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=6e-08  Score=105.57  Aligned_cols=75  Identities=24%  Similarity=0.337  Sum_probs=61.3

Q ss_pred             HhccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCE
Q 040888          402 TATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGH  477 (495)
Q Consensus       402 ~~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  477 (495)
                      +-..+|....+||+|+||.|||++-+ ||+.+|||+|.... ....-....+|+++++++.|||+|+.+..+.+...
T Consensus       476 RY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~-s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~  551 (1351)
T KOG1035|consen  476 RYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKA-SDKLYSKILREVKLLARLNHPNVVRYYSAWVESTA  551 (1351)
T ss_pred             hHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCch-HHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCC
Confidence            34567778899999999999999874 89999999998654 23334567889999999999999999988876543

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=98.44  E-value=7.8e-07  Score=88.65  Aligned_cols=87  Identities=20%  Similarity=0.258  Sum_probs=67.3

Q ss_pred             CcccceeccCCceEEEEEEcC-C--CCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeC----CEE
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-D--GKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQ----GHN  478 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~--g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~----~~~  478 (495)
                      |...+.||+|+||.||++... .  +..||+|++..........+.+.+|++++.++ +||||+++++++...    ...
T Consensus         2 y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~   81 (332)
T cd07857           2 YELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNEL   81 (332)
T ss_pred             ceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcE
Confidence            566788999999999999974 3  77999999875322222346788999999999 599999999986543    346


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++++||+. ++|.+++
T Consensus        82 ~~~~e~~~-~~L~~~l   96 (332)
T cd07857          82 YLYEELME-ADLHQII   96 (332)
T ss_pred             EEEEeccc-CCHHHHH
Confidence            78889886 6887765

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.43  E-value=1.1e-07  Score=97.12  Aligned_cols=85  Identities=20%  Similarity=0.363  Sum_probs=68.4

Q ss_pred             cceeccCCceEEEEEEcC-CCCEEEEEEecCccccc--ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCE--EEEEEEe
Q 040888          410 GRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR--ANSESFSEIVQNISRIRHTNIAELVGFCSEQGH--NILIYDY  484 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~--~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~--~~lv~ey  484 (495)
                      ..+||+|+|-+||||... +|..||--.++.....+  ...+.|..|+.+|+.++|||||+++.++.+...  .-+|.|.
T Consensus        45 ~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL  124 (632)
T KOG0584|consen   45 DEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITEL  124 (632)
T ss_pred             hhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeec
Confidence            477999999999999984 48888754443322222  234789999999999999999999999987654  6789999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      |..|+|.+|+
T Consensus       125 ~TSGtLr~Y~  134 (632)
T KOG0584|consen  125 FTSGTLREYR  134 (632)
T ss_pred             ccCCcHHHHH
Confidence            9999999986

>PHA03210 serine/threonine kinase US3; Provisional

Probab=98.41  E-value=3.2e-07  Score=96.73  Aligned_cols=90  Identities=16%  Similarity=0.258  Sum_probs=65.3

Q ss_pred             ccCCcccceeccCCceEEEEEEcCC--CCEEEEEEe--------------cCc-ccccccHHHHHHHHHHHhcCCCCCcc
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPD--GKVLAVKKI--------------DSS-HFQRANSESFSEIVQNISRIRHTNIA  466 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~--g~~vavK~l--------------~~~-~~~~~~~~~f~~e~~~l~~l~H~niv  466 (495)
                      .++|...+.||+|+||+||+|..+.  +...++|.+              ... .......+.+.+|++++.+++|||||
T Consensus       147 ~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnIv  226 (501)
T PHA03210        147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENIL  226 (501)
T ss_pred             hhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCcC
Confidence            4679999999999999999987632  222222211              000 00111245688999999999999999


Q ss_pred             eEEEEEEeCCEEEEEEEecCCCCHhhhh
Q 040888          467 ELVGFCSEQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       467 ~l~g~~~~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      ++++++...+..++|+|++. ++|.+++
T Consensus       227 ~l~~~~~~~~~~~lv~e~~~-~~l~~~l  253 (501)
T PHA03210        227 KIEEILRSEANTYMITQKYD-FDLYSFM  253 (501)
T ss_pred             cEeEEEEECCeeEEEEeccc-cCHHHHH
Confidence            99999999999999999985 4666553

>PRK14879 serine/threonine protein kinase; Provisional

Probab=98.41  E-value=8.2e-07  Score=82.31  Aligned_cols=83  Identities=14%  Similarity=0.298  Sum_probs=66.7

Q ss_pred             ceeccCCceEEEEEEcCCCCEEEEEEecCccccc------ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          411 RLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQR------ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~------~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +.||+|++|.||+|.. .|..|++|.........      .....+.+|++++..++|++++....++...+..++||||
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   80 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY   80 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence            5789999999999988 66778899865432211      1124578899999999999998888888777888999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++++|.+++
T Consensus        81 ~~G~~L~~~~   90 (211)
T PRK14879         81 IEGEPLKDLI   90 (211)
T ss_pred             eCCcCHHHHH
Confidence            9999998765

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=98.38  E-value=1.3e-06  Score=79.82  Aligned_cols=79  Identities=19%  Similarity=0.283  Sum_probs=58.7

Q ss_pred             cceeccCCceEEEEEEcCCCCEEEEEEecCccccccc------------------------HHHHHHHHHHHhcCCCCCc
Q 040888          410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRAN------------------------SESFSEIVQNISRIRHTNI  465 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~------------------------~~~f~~e~~~l~~l~H~ni  465 (495)
                      ...||+|+||.||+|...+|+.||||.++........                        ...+..|.+.+.+++|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3679999999999999888999999998764211000                        1224578999999999998


Q ss_pred             ceEEEEEEeCCEEEEEEEecCCCCH
Q 040888          466 AELVGFCSEQGHNILIYDYYRNGSL  490 (495)
Q Consensus       466 v~l~g~~~~~~~~~lv~ey~~~GsL  490 (495)
                      .....+....  .++||||++++++
T Consensus        82 ~~p~~~~~~~--~~lVmE~~~g~~~  104 (190)
T cd05145          82 PVPEPILLKK--NVLVMEFIGDDGS  104 (190)
T ss_pred             CCceEEEecC--CEEEEEEecCCCc
Confidence            6555544433  4899999998754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.38  E-value=4.4e-08  Score=100.38  Aligned_cols=88  Identities=23%  Similarity=0.373  Sum_probs=75.5

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .++|.....+|.|.||.|||++. ..+...|||.++....  ........|+-++...+|||||.++|.+...+..++.|
T Consensus        14 ~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~--dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicM   91 (829)
T KOG0576|consen   14 QDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPG--DDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICM   91 (829)
T ss_pred             ccchhheeeecCCcccchhhhcccccCchhhheeeeccCC--ccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEE
Confidence            45677789999999999999998 4688999999986532  22455678899999999999999999999999999999


Q ss_pred             EecCCCCHhhh
Q 040888          483 DYYRNGSLHEF  493 (495)
Q Consensus       483 ey~~~GsL~~~  493 (495)
                      ||+.+|+|.+.
T Consensus        92 EycgggslQdi  102 (829)
T KOG0576|consen   92 EYCGGGSLQDI  102 (829)
T ss_pred             EecCCCcccce
Confidence            99999999774

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=98.38  E-value=1.1e-07  Score=92.93  Aligned_cols=89  Identities=20%  Similarity=0.268  Sum_probs=69.3

Q ss_pred             CcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccc-----cHHHHHHHHHHHhcCCCCCcceEEEEEEe-CCEEE
Q 040888          407 FATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRA-----NSESFSEIVQNISRIRHTNIAELVGFCSE-QGHNI  479 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~-----~~~~f~~e~~~l~~l~H~niv~l~g~~~~-~~~~~  479 (495)
                      |-..++||+|+|+.||||.. ...+.||||.-......+.     ..+...+|-++-..++||.||++++|+.- .+..+
T Consensus       465 YLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsFC  544 (775)
T KOG1151|consen  465 YLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSFC  544 (775)
T ss_pred             HHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccce
Confidence            44567899999999999986 4577899997543321111     12345688899999999999999999965 45678


Q ss_pred             EEEEecCCCCHhhhhC
Q 040888          480 LIYDYYRNGSLHEFLH  495 (495)
Q Consensus       480 lv~ey~~~GsL~~~L~  495 (495)
                      -|.||+++.||+-||+
T Consensus       545 TVLEYceGNDLDFYLK  560 (775)
T KOG1151|consen  545 TVLEYCEGNDLDFYLK  560 (775)
T ss_pred             eeeeecCCCchhHHHH
Confidence            9999999999998874

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.37  E-value=9.4e-07  Score=93.96  Aligned_cols=91  Identities=13%  Similarity=0.259  Sum_probs=68.0

Q ss_pred             ccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccc-----cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQ-----RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~-----~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  478 (495)
                      ...|...+.||+|+||.||+|.+.+...++.++.......     ....+.+.+|++++.+++|++++....++...+..
T Consensus       332 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~  411 (535)
T PRK09605        332 KRRKIPDHLIGKGAEADIKKGEYLGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEK  411 (535)
T ss_pred             ccccCccceeccCCcEEEEEEeecCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCC
Confidence            3445667899999999999999865443332222221110     01235688999999999999999988888887788


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++||||+++++|.+++
T Consensus       412 ~lv~E~~~g~~L~~~l  427 (535)
T PRK09605        412 TIVMEYIGGKDLKDVL  427 (535)
T ss_pred             EEEEEecCCCcHHHHH
Confidence            9999999999999875

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.37  E-value=5.9e-08  Score=98.69  Aligned_cols=82  Identities=18%  Similarity=0.331  Sum_probs=68.4

Q ss_pred             cceeccCCceEEEEEEcCC-CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCC
Q 040888          410 GRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNG  488 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~G  488 (495)
                      .-.||.|+||+||+|+.++ +-..|.|++.-..  ....++|+-||++|+..+||+||+|++.|..++..++..|||.||
T Consensus        37 iGELGDGAFGKVyKA~nket~~lAAaKvIetks--eEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~GG  114 (1187)
T KOG0579|consen   37 IGELGDGAFGKVYKAVNKETKLLAAAKVIETKS--EEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCGGG  114 (1187)
T ss_pred             HhhhcCccchhhhhhhcccchhhhhhhhhcccc--hhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecCCc
Confidence            4568999999999999865 4455778875432  233678999999999999999999999999999999999999999


Q ss_pred             CHhhh
Q 040888          489 SLHEF  493 (495)
Q Consensus       489 sL~~~  493 (495)
                      -.+..
T Consensus       115 AVDai  119 (1187)
T KOG0579|consen  115 AVDAI  119 (1187)
T ss_pred             hHhHH
Confidence            87653

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=98.36  E-value=1.1e-06  Score=80.62  Aligned_cols=82  Identities=15%  Similarity=0.314  Sum_probs=63.7

Q ss_pred             eeccCCceEEEEEEcCCCCEEEEEEecCccccc------ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEec
Q 040888          412 LLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQR------ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYY  485 (495)
Q Consensus       412 ~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~------~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~  485 (495)
                      .||+|+||.||+|.+ +|..|++|.........      ...+.+.+|++++..++|+++.....++...+..++||||+
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   79 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI   79 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence            489999999999996 56788999865432111      11356788999999999998776666777777779999999


Q ss_pred             CCCCHhhhh
Q 040888          486 RNGSLHEFL  494 (495)
Q Consensus       486 ~~GsL~~~L  494 (495)
                      ++++|.+++
T Consensus        80 ~g~~l~~~~   88 (199)
T TIGR03724        80 EGKPLKDVI   88 (199)
T ss_pred             CCccHHHHH
Confidence            999998764

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=98.36  E-value=1.3e-07  Score=86.11  Aligned_cols=88  Identities=27%  Similarity=0.370  Sum_probs=74.7

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC-----CEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ-----GHN  478 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~-----~~~  478 (495)
                      +.|...+.+|+|||..||.++. .++..+|+|++.....  ...+..++|++.-++++|||++++++++..+     .+.
T Consensus        21 ~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~--~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~   98 (302)
T KOG2345|consen   21 KRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQ--EDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEA   98 (302)
T ss_pred             ceEEEeeeecCCCceeeeeecccCcccchhhheeeccch--HHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeE
Confidence            3567789999999999999984 6788999999976542  3467789999999999999999999998654     358


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      |+++.|...|+|.+.+
T Consensus        99 yll~Pyy~~Gsl~d~i  114 (302)
T KOG2345|consen   99 YLLLPYYKRGSLLDEI  114 (302)
T ss_pred             EEEeehhccccHHHHH
Confidence            9999999999998875

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=98.35  E-value=1.2e-06  Score=82.29  Aligned_cols=77  Identities=25%  Similarity=0.518  Sum_probs=66.9

Q ss_pred             CceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCCCHhhhh
Q 040888          417 TIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       417 ~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      +||.||+|+.. ++..+|+|++........ .+.+.+|++.+++++|+|++++++++......++++||+++++|.+++
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~-~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~   78 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKK-RERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLL   78 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccH-HHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHH
Confidence            58999999986 489999999976543211 578999999999999999999999999999999999999999998875

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.35  E-value=8e-07  Score=59.61  Aligned_cols=39  Identities=44%  Similarity=0.952  Sum_probs=29.0

Q ss_pred             hHHHHHHHHHHHcCCC-C-CCCCCCCCCC-CCCCCCCcccEEec
Q 040888           27 SQDASALNVMYTSLHS-P-SQLSNWKAGG-GDPCGEHWKGITCS   67 (495)
Q Consensus        27 ~~~~~~L~~~~~~~~~-~-~~l~~w~~~~-~~~C~~~w~gv~c~   67 (495)
                      ++|++||++||+++.. + ..+.+|.... .+||  +|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C--~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC--SWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC--CSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe--eeccEEeC
Confidence            5789999999999984 4 4789999753 7899  89999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=98.33  E-value=1.6e-06  Score=80.55  Aligned_cols=89  Identities=16%  Similarity=0.188  Sum_probs=70.2

Q ss_pred             ccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccc-cHHH------HHHHHHHHhcCCCCCcceEEEEEEeC-
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRA-NSES------FSEIVQNISRIRHTNIAELVGFCSEQ-  475 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~-~~~~------f~~e~~~l~~l~H~niv~l~g~~~~~-  475 (495)
                      .++|...+++|+|+||.||.... ++..+|+|.++....... ..+.      |.+|++.+.++.|++|..+..++... 
T Consensus        30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~  108 (232)
T PRK10359         30 SYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAE  108 (232)
T ss_pred             hCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeecc
Confidence            46788999999999999999655 577899999975532211 1112      68999999999999999999886643 


Q ss_pred             -------CEEEEEEEecCCCCHhhh
Q 040888          476 -------GHNILIYDYYRNGSLHEF  493 (495)
Q Consensus       476 -------~~~~lv~ey~~~GsL~~~  493 (495)
                             ...++||||+++.+|.++
T Consensus       109 ~~~~~~~~~~~lvmEyi~G~tL~~~  133 (232)
T PRK10359        109 RKTLRYAHTYIMLIEYIEGVELNDM  133 (232)
T ss_pred             cccccccCCeEEEEEEECCccHHHh
Confidence                   247899999999999775

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=9.9e-08  Score=93.44  Aligned_cols=155  Identities=21%  Similarity=0.165  Sum_probs=107.7

Q ss_pred             CCCEeEEEcCCCCCccccccc-cCCCCCCcEEECcCCCCCCCCCCCC---CCCCcEEECcCCcCCCCcchhccCCCCCcE
Q 040888           68 GSSVTEIKLSGLGLNGQLGYQ-LTNLKSVSYLDVSNNNLKDSIPYQL---PPNLKHLDLSENQFSGTVPYSISQMSELKY  143 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~g~~~~~-~~~l~~L~~L~Ls~N~l~g~~p~~~---~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~  143 (495)
                      .++++.|+|+.|.|.-..... -..+++|+.|.|+.+.|+-.--..+   .|+|+.|+|..|..-+.-......+..|+.
T Consensus       171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~  250 (505)
T KOG3207|consen  171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE  250 (505)
T ss_pred             cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence            368999999999988655432 2367889999999999984221111   289999999999644444445566788999


Q ss_pred             EEcccCcCCCcc-chhhhCCCCCcEEEccCCcCCCc-Cccc-----ccCCCCCCEEeccCCcccccc--cccCCcc-CcE
Q 040888          144 LNLGSNQLNGQL-SDMFQKNEKLETLDLSKNQLTGE-LPRS-----FASLSSLKKLYLQNNQFTGSI--NVLGKLP-LDE  213 (495)
Q Consensus       144 L~L~~N~l~g~~-p~~~~~l~~L~~L~ls~N~l~g~-~p~~-----~~~l~~L~~L~l~~N~l~g~~--~~~~~~~-L~~  213 (495)
                      |+|++|++-... -...+.++.|..|+++.+.++.. +|+.     ...+++|++|++..|++....  ..+..++ |+.
T Consensus       251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~  330 (505)
T KOG3207|consen  251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKH  330 (505)
T ss_pred             ccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhh
Confidence            999999975322 23467788899999999988753 3333     456889999999999985322  3333333 555


Q ss_pred             EEeecCCCc
Q 040888          214 LNVENNKFS  222 (495)
Q Consensus       214 l~l~~N~l~  222 (495)
                      |.+..|.|+
T Consensus       331 l~~~~n~ln  339 (505)
T KOG3207|consen  331 LRITLNYLN  339 (505)
T ss_pred             hhccccccc
Confidence            555555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.30  E-value=2.6e-08  Score=82.61  Aligned_cols=107  Identities=28%  Similarity=0.393  Sum_probs=59.2

Q ss_pred             EeEEEcCCCCCc--cccccccCCCCCCcEEECcCCCCCCCCCCCCC---CCCcEEECcCCcCCCCcchhccCCCCCcEEE
Q 040888           71 VTEIKLSGLGLN--GQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP---PNLKHLDLSENQFSGTVPYSISQMSELKYLN  145 (495)
Q Consensus        71 v~~l~L~~n~l~--g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~---~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  145 (495)
                      +..++|+++.|-  -..+..+.....|+..+|++|.|. .+|..+.   +.++.|+|++|.|+ .+|.++..++.|+.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            334555555543  112234445555666666666665 3443332   45666666666666 5666666666666666


Q ss_pred             cccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcc
Q 040888          146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPR  181 (495)
Q Consensus       146 L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~  181 (495)
                      ++.|.|. ..|..+..+.+|..|+..+|.+. .+|.
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~  140 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDV  140 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcH
Confidence            6666665 33444444666666666666654 3443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.29  E-value=2e-08  Score=83.27  Aligned_cols=103  Identities=26%  Similarity=0.374  Sum_probs=70.2

Q ss_pred             CcEEECcCCCCCCCCCCCC---C--CCCcEEECcCCcCCCCcchhc-cCCCCCcEEEcccCcCCCccchhhhCCCCCcEE
Q 040888           95 VSYLDVSNNNLKDSIPYQL---P--PNLKHLDLSENQFSGTVPYSI-SQMSELKYLNLGSNQLNGQLSDMFQKNEKLETL  168 (495)
Q Consensus        95 L~~L~Ls~N~l~g~~p~~~---~--~~L~~L~Ls~N~l~g~~p~~~-~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L  168 (495)
                      +..+||+++.+. .++...   .  ..|+..+|++|.|.. +|+.| ...+.++.|+|++|.|+ .+|..+..++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            556777777664 222221   1  567777888888874 44444 44557788888888887 567778888888888


Q ss_pred             EccCCcCCCcCcccccCCCCCCEEeccCCcccc
Q 040888          169 DLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG  201 (495)
Q Consensus       169 ~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g  201 (495)
                      +++.|.|. ..|.-+..|.+|-.|+..+|.+..
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e  137 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAE  137 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCcccc
Confidence            88888887 556666667777777777776643

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.27  E-value=7.8e-07  Score=89.66  Aligned_cols=89  Identities=15%  Similarity=0.309  Sum_probs=75.9

Q ss_pred             CCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      .|+..+.||+||.++||++...+.+.+|+|++............|..|+++|.++ .|.+||+|++|-..++..|+||||
T Consensus       362 ~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE~  441 (677)
T KOG0596|consen  362 EYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVMEC  441 (677)
T ss_pred             hhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEeec
Confidence            4667789999999999999998888999998866544444467899999999999 599999999999999999999998


Q ss_pred             cCCCCHhhhhC
Q 040888          485 YRNGSLHEFLH  495 (495)
Q Consensus       485 ~~~GsL~~~L~  495 (495)
                      =+ .||..+|+
T Consensus       442 Gd-~DL~kiL~  451 (677)
T KOG0596|consen  442 GD-IDLNKILK  451 (677)
T ss_pred             cc-ccHHHHHH
Confidence            64 48877763

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=98.27  E-value=2.1e-06  Score=81.07  Aligned_cols=72  Identities=17%  Similarity=0.196  Sum_probs=59.9

Q ss_pred             CCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCCCHhhhh
Q 040888          416 GTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       416 G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      |.||.||++.. .+++.+|+|++....       .+.+|...+....||||+++++++...+..++|+||+++|+|.+++
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l   76 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS-------EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHI   76 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh-------hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHH
Confidence            88999999998 468899999986532       2334555556667999999999999999999999999999998875

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.27  E-value=9.9e-08  Score=98.71  Aligned_cols=121  Identities=31%  Similarity=0.364  Sum_probs=73.3

Q ss_pred             CcEEECcCCCCCCCCCCC--CCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchh-hhCCCCCcEEEcc
Q 040888           95 VSYLDVSNNNLKDSIPYQ--LPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDM-FQKNEKLETLDLS  171 (495)
Q Consensus        95 L~~L~Ls~N~l~g~~p~~--~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~-~~~l~~L~~L~ls  171 (495)
                      |.+.+.++|.|.- ....  +.+.|++|||++|+|+..  +.+..|++|+.|||+.|.|. .+|.. ...+ .|+.|.|.
T Consensus       166 L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence            4445555555541 1111  225677777777777633  26677777777777777776 33332 1222 37777777


Q ss_pred             CCcCCCcCcccccCCCCCCEEeccCCcccccc--cccCCcc-CcEEEeecCCCc
Q 040888          172 KNQLTGELPRSFASLSSLKKLYLQNNQFTGSI--NVLGKLP-LDELNVENNKFS  222 (495)
Q Consensus       172 ~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~--~~~~~~~-L~~l~l~~N~l~  222 (495)
                      +|.++..  ..+.+|.+|+.|||++|-|.+.-  ..+..+. |..|+|.+|++.
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7777632  23567777777788888777644  3344444 777777777765

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=98.26  E-value=9.2e-07  Score=89.52  Aligned_cols=90  Identities=21%  Similarity=0.296  Sum_probs=71.4

Q ss_pred             cCCcccceeccCCceEEEEEEcCC-CCEEEEEEecCccccc------ccHHHHHHHHHHHhcCC---CCCcceEEEEEEe
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQR------ANSESFSEIVQNISRIR---HTNIAELVGFCSE  474 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~------~~~~~f~~e~~~l~~l~---H~niv~l~g~~~~  474 (495)
                      .+|...+.+|+|+||.|+.|.++. ...|+||.+.+.+.-.      ...-..-.|+++|++++   |+||++++++|++
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd  640 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED  640 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec
Confidence            457778999999999999999954 6689999998754310      01112457999999998   9999999999999


Q ss_pred             CCEEEEEEEe-cCCCCHhhhh
Q 040888          475 QGHNILIYDY-YRNGSLHEFL  494 (495)
Q Consensus       475 ~~~~~lv~ey-~~~GsL~~~L  494 (495)
                      +++.++++|- -++-||++++
T Consensus       641 dd~yyl~te~hg~gIDLFd~I  661 (772)
T KOG1152|consen  641 DDYYYLETEVHGEGIDLFDFI  661 (772)
T ss_pred             CCeeEEEecCCCCCcchhhhh
Confidence            9999999985 4455788776

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=98.25  E-value=1.4e-06  Score=89.69  Aligned_cols=86  Identities=20%  Similarity=0.374  Sum_probs=72.2

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-C-----CCcceEEEEEEeCCEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-H-----TNIAELVGFCSEQGHN  478 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-H-----~niv~l~g~~~~~~~~  478 (495)
                      .|...+.||+|.||.|-||.. .+++.||||.++....   ..++-..|+.+|..++ |     -|+|++++|+...+..
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~---f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hl  263 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKR---FLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHL  263 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccChH---HHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccce
Confidence            567789999999999999987 5699999999986532   2455677899998886 3     5899999999999999


Q ss_pred             EEEEEecCCCCHhhhhC
Q 040888          479 ILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L~  495 (495)
                      +||+|.+.. +|.++|+
T Consensus       264 ciVfELL~~-NLYellK  279 (586)
T KOG0667|consen  264 CIVFELLST-NLYELLK  279 (586)
T ss_pred             eeeehhhhh-hHHHHHH
Confidence            999999865 8988874

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=98.23  E-value=2.6e-06  Score=82.56  Aligned_cols=97  Identities=22%  Similarity=0.361  Sum_probs=75.2

Q ss_pred             HHHHHhccCCcccceeccCCceEEEEEEcCC------CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEE
Q 040888          398 ADLLTATANFATGRLLGEGTIGRVYRAKYPD------GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF  471 (495)
Q Consensus       398 ~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~~------g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~  471 (495)
                      .++......+....++-+|.||+||+|.+++      .+.|-||.++.... .-....|..|..++..+.|||+.++.+.
T Consensus       277 ~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS-~iQv~~~L~es~lly~~sH~nll~V~~V  355 (563)
T KOG1024|consen  277 QELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHAS-QIQVNLLLQESMLLYGASHPNLLSVLGV  355 (563)
T ss_pred             HhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhccc-HHHHHHHHHHHHHHhcCcCCCccceeEE
Confidence            4555555667888889999999999997743      34566777754432 1224568899999999999999999999


Q ss_pred             EEeC-CEEEEEEEecCCCCHhhhhC
Q 040888          472 CSEQ-GHNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       472 ~~~~-~~~~lv~ey~~~GsL~~~L~  495 (495)
                      |.++ +..+++|.++.-|+|..||+
T Consensus       356 ~ie~~~~P~V~y~~~~~gNLK~FL~  380 (563)
T KOG1024|consen  356 SIEDYATPFVLYPATGVGNLKSFLQ  380 (563)
T ss_pred             EeeccCcceEEEeccCcchHHHHHH
Confidence            9775 46789999999999999873

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=98.21  E-value=5.4e-07  Score=88.72  Aligned_cols=91  Identities=22%  Similarity=0.312  Sum_probs=76.6

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      .+.|..-++||+|+||.||-|+.+ +|+.+|.|++.+.... +....--..|-.+|.++..+.||.+--.|.+.+..++|
T Consensus       184 ~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClV  263 (591)
T KOG0986|consen  184 KNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLV  263 (591)
T ss_pred             ccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEE
Confidence            356788899999999999999874 6999999999765332 22344567888999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      +..|.+|||.-||
T Consensus       264 LtlMNGGDLkfHi  276 (591)
T KOG0986|consen  264 LTLMNGGDLKFHI  276 (591)
T ss_pred             EEeecCCceeEEe
Confidence            9999999998775

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=98.19  E-value=3.2e-07  Score=84.43  Aligned_cols=82  Identities=22%  Similarity=0.334  Sum_probs=66.9

Q ss_pred             ccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHH-hcCCCCCcceEEEEEEeCCEEEEEEEecC
Q 040888          409 TGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNI-SRIRHTNIAELVGFCSEQGHNILIYDYYR  486 (495)
Q Consensus       409 ~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l-~~l~H~niv~l~g~~~~~~~~~lv~ey~~  486 (495)
                      ....||.|.||+|+|-.+ +.|+..|||+++..... ...+++..|.++. +.-..||||+++|.+..++..|+-||.|.
T Consensus        68 dlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~-keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd  146 (361)
T KOG1006|consen   68 DLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIE-KEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMD  146 (361)
T ss_pred             HHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccch-HHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHh
Confidence            346799999999999988 56999999999876442 3356788888765 45589999999999999999999999996


Q ss_pred             CCCHhh
Q 040888          487 NGSLHE  492 (495)
Q Consensus       487 ~GsL~~  492 (495)
                      - ||+.
T Consensus       147 ~-SlDk  151 (361)
T KOG1006|consen  147 I-SLDK  151 (361)
T ss_pred             h-hHHH
Confidence            3 5544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.18  E-value=2.6e-08  Score=102.83  Aligned_cols=107  Identities=36%  Similarity=0.408  Sum_probs=44.3

Q ss_pred             cCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcch-hccCCCCCcEEEcccCcCCCccchhhhCCCCCcE
Q 040888           89 LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPY-SISQMSELKYLNLGSNQLNGQLSDMFQKNEKLET  167 (495)
Q Consensus        89 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~  167 (495)
                      +.-++.|+.|||+.|+++..---.-.+.|++|||+.|.+. .+|. ....+ +|..|+|++|.++...  .+.++.+|+.
T Consensus       183 Lqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL~--gie~LksL~~  258 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTLR--GIENLKSLYG  258 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhhh--hHHhhhhhhc
Confidence            3334445555555555543210001145555555555554 2222 11122 2555555555544221  1334445555


Q ss_pred             EEccCCcCCCcCc-ccccCCCCCCEEeccCCcc
Q 040888          168 LDLSKNQLTGELP-RSFASLSSLKKLYLQNNQF  199 (495)
Q Consensus       168 L~ls~N~l~g~~p-~~~~~l~~L~~L~l~~N~l  199 (495)
                      |||++|-|++--- ..+..|..|+.|+|.+|.+
T Consensus       259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            5555555443210 1123344455555555544

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.17  E-value=1.3e-06  Score=89.25  Aligned_cols=90  Identities=14%  Similarity=0.251  Sum_probs=74.0

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccc-ccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHF-QRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .-|...+.||-|+||+|..+.- ++...+|.|.|++... .+.......+|-++|.+.+.+-+|+|+-.|.+++..|+||
T Consensus       629 SmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVM  708 (1034)
T KOG0608|consen  629 SMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVM  708 (1034)
T ss_pred             cceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEE
Confidence            3477788899999999998865 4567889999976532 1122345678899999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++||+..+|
T Consensus       709 dYIPGGDmMSLL  720 (1034)
T KOG0608|consen  709 DYIPGGDMMSLL  720 (1034)
T ss_pred             eccCCccHHHHH
Confidence            999999998765

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.16  E-value=5.4e-06  Score=76.12  Aligned_cols=83  Identities=16%  Similarity=0.203  Sum_probs=60.9

Q ss_pred             CcccceeccCCceEEEEEEcCCCCEEEEEEecCccccc--------------------ccHHHHHHHHHHHhcCCCCC--
Q 040888          407 FATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQR--------------------ANSESFSEIVQNISRIRHTN--  464 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~--------------------~~~~~f~~e~~~l~~l~H~n--  464 (495)
                      |...+.||+|+||.||++..++|+.||||+++......                    .....+..|...+.++.|++  
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~   96 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFP   96 (198)
T ss_pred             hhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCCC
Confidence            56678999999999999999889999999876432100                    00123677888999998874  


Q ss_pred             cceEEEEEEeCCEEEEEEEecCCCCHhhh
Q 040888          465 IAELVGFCSEQGHNILIYDYYRNGSLHEF  493 (495)
Q Consensus       465 iv~l~g~~~~~~~~~lv~ey~~~GsL~~~  493 (495)
                      +.+.++    ....++||||+++++|.+.
T Consensus        97 v~~~~~----~~~~~lv~e~~~g~~L~~~  121 (198)
T cd05144          97 VPKPID----WNRHAVVMEYIDGVELYRV  121 (198)
T ss_pred             CCceee----cCCceEEEEEeCCcchhhc
Confidence            444443    2345899999999988654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.16  E-value=3.3e-07  Score=94.18  Aligned_cols=125  Identities=29%  Similarity=0.321  Sum_probs=68.4

Q ss_pred             CEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCC-CCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           70 SVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIP-YQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        70 ~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      .+..++|..|.+.- +-..+..+++|..|+|..|.+..... ....++|++|+|++|.|+...+  +..++.|+.|++++
T Consensus        73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSG  149 (414)
T ss_pred             hHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheecc
Confidence            34444455555543 22235556666666666666664443 2333666666666666664332  44455566666666


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCc-ccccCCCCCCEEeccCCccc
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELP-RSFASLSSLKKLYLQNNQFT  200 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p-~~~~~l~~L~~L~l~~N~l~  200 (495)
                      |.|+..  ..+..+..|+.+++++|.++..-+ . ...+.+|+.+++.+|.+.
T Consensus       150 N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  150 NLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             Ccchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            666532  223345666666666666663322 1 355566666666666554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.16  E-value=7.7e-07  Score=85.06  Aligned_cols=154  Identities=27%  Similarity=0.395  Sum_probs=91.2

Q ss_pred             CCEeEEEcCCCCCcc----ccccccCCCCCCcEEECcCCCCCCC----CCCCC--------C-CCCcEEECcCCcCCCCc
Q 040888           69 SSVTEIKLSGLGLNG----QLGYQLTNLKSVSYLDVSNNNLKDS----IPYQL--------P-PNLKHLDLSENQFSGTV  131 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g----~~~~~~~~l~~L~~L~Ls~N~l~g~----~p~~~--------~-~~L~~L~Ls~N~l~g~~  131 (495)
                      ..++.|+|++|.+.-    .+...+.+.++|+..++|. -++|.    +|..+        . +.|++||||.|.|.-.-
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            468888888888763    3455666777777777774 33443    33221        1 47888888888776433


Q ss_pred             ch----hccCCCCCcEEEcccCcCCCcc-------------chhhhCCCCCcEEEccCCcCCCc----CcccccCCCCCC
Q 040888          132 PY----SISQMSELKYLNLGSNQLNGQL-------------SDMFQKNEKLETLDLSKNQLTGE----LPRSFASLSSLK  190 (495)
Q Consensus       132 p~----~~~~l~~L~~L~L~~N~l~g~~-------------p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~  190 (495)
                      +.    -+.++..|+.|.|.+|.+.-.-             ..-.+.-+.|+++..++|++...    +...|...+.|+
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence            33    3456777777888777775111             11123345677777777777532    223344556677


Q ss_pred             EEeccCCccc--ccc---cccCCcc-CcEEEeecCCCcc
Q 040888          191 KLYLQNNQFT--GSI---NVLGKLP-LDELNVENNKFSG  223 (495)
Q Consensus       191 ~L~l~~N~l~--g~~---~~~~~~~-L~~l~l~~N~l~g  223 (495)
                      .+.+..|.+.  |..   ..+...+ |+.|||.+|.|+-
T Consensus       189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~  227 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL  227 (382)
T ss_pred             eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence            7777777654  221   2233334 6777777776663

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.15  E-value=7.1e-07  Score=85.29  Aligned_cols=154  Identities=21%  Similarity=0.317  Sum_probs=102.9

Q ss_pred             CCEeEEEcCCCCCcccccc----ccCCCCCCcEEECcCCCCCC----CCC---------CCC--CCCCcEEECcCCcCCC
Q 040888           69 SSVTEIKLSGLGLNGQLGY----QLTNLKSVSYLDVSNNNLKD----SIP---------YQL--PPNLKHLDLSENQFSG  129 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~----~~~~l~~L~~L~Ls~N~l~g----~~p---------~~~--~~~L~~L~Ls~N~l~g  129 (495)
                      ++++.|+|++|.|.-.-++    -+..++.|++|.|.+|.+.-    .+.         ...  .+.|++++..+|++..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            4788888888888754433    35567888888888887751    110         111  2678888888888863


Q ss_pred             C----cchhccCCCCCcEEEcccCcCCC----ccchhhhCCCCCcEEEccCCcCCCc----CcccccCCCCCCEEeccCC
Q 040888          130 T----VPYSISQMSELKYLNLGSNQLNG----QLSDMFQKNEKLETLDLSKNQLTGE----LPRSFASLSSLKKLYLQNN  197 (495)
Q Consensus       130 ~----~p~~~~~l~~L~~L~L~~N~l~g----~~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N  197 (495)
                      .    +...|...+.|+.+.++.|.|.-    .+...|..+++|+.|||..|.|+-.    +...+..+++|+.|+++++
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            2    23345667788888888888742    1335677888888888888888732    3445666778888888888


Q ss_pred             ccc--ccc---cccCC-c-cCcEEEeecCCCc
Q 040888          198 QFT--GSI---NVLGK-L-PLDELNVENNKFS  222 (495)
Q Consensus       198 ~l~--g~~---~~~~~-~-~L~~l~l~~N~l~  222 (495)
                      .+.  |.+   ..+.. . .|+.+.+.+|.++
T Consensus       252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  252 LLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             ccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            876  322   22222 2 3788888888776

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.14  E-value=2.6e-07  Score=95.00  Aligned_cols=126  Identities=25%  Similarity=0.285  Sum_probs=61.5

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      ..++.|+|.+|.+..... .+..+++|++|||++|.|+...+..-.+.|+.|++++|.++..  ..+..+..|+.+++++
T Consensus        95 ~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~  171 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSY  171 (414)
T ss_pred             cceeeeeccccchhhccc-chhhhhcchheeccccccccccchhhccchhhheeccCcchhc--cCCccchhhhcccCCc
Confidence            345555555555554322 1444555556666666555444433334455556666655521  2233355555556666


Q ss_pred             CcCCCccc-hhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCccc
Q 040888          149 NQLNGQLS-DMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT  200 (495)
Q Consensus       149 N~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~  200 (495)
                      |.+...-+ . ...+.+|+.+++.+|.+.-  ...+..+..+..+++..|.++
T Consensus       172 n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  172 NRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             chhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccce
Confidence            55553333 1 3444555555555555541  122333334444455555554

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.09  E-value=6.7e-07  Score=86.98  Aligned_cols=90  Identities=17%  Similarity=0.258  Sum_probs=71.1

Q ss_pred             CCcccceeccCCceEEEEEEcCC-CCEEEEEEecCccc-ccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHF-QRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~~-g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      +|....+||+|+||+|..|..+. ...+|||+++++-. +....+--+.|-++|+-- +-|.+|+++.++..-+..|+||
T Consensus       350 DFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyFVM  429 (683)
T KOG0696|consen  350 DFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYFVM  429 (683)
T ss_pred             ccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheeeEE
Confidence            67778999999999999998864 66899999987643 222223334555666544 7899999999999999999999


Q ss_pred             EecCCCCHhhhhC
Q 040888          483 DYYRNGSLHEFLH  495 (495)
Q Consensus       483 ey~~~GsL~~~L~  495 (495)
                      ||+.+|+|.-+++
T Consensus       430 EyvnGGDLMyhiQ  442 (683)
T KOG0696|consen  430 EYVNGGDLMYHIQ  442 (683)
T ss_pred             EEecCchhhhHHH
Confidence            9999999987653

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.08  E-value=4.8e-08  Score=89.08  Aligned_cols=87  Identities=22%  Similarity=0.453  Sum_probs=67.1

Q ss_pred             CcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--------CE
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ--------GH  477 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--------~~  477 (495)
                      |....+||+|.||.||+|+.. .|+.||+|+.-.+....+....-.+|+++|..++|+|++.++..|...        ..
T Consensus        19 yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t   98 (376)
T KOG0669|consen   19 YEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRAT   98 (376)
T ss_pred             HHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccce
Confidence            444578999999999999884 588899988654333223345568999999999999999999999653        24


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++||++++. ||+..|
T Consensus        99 ~ylVf~~ceh-DLaGlL  114 (376)
T KOG0669|consen   99 FYLVFDFCEH-DLAGLL  114 (376)
T ss_pred             eeeeHHHhhh-hHHHHh
Confidence            7899999986 666543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.06  E-value=5e-06  Score=55.91  Aligned_cols=36  Identities=42%  Similarity=0.687  Sum_probs=22.1

Q ss_pred             CCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCC
Q 040888          116 NLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLN  152 (495)
Q Consensus       116 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  152 (495)
                      +|++|+|++|+|+ .+|+.+++|++|+.|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5666666666666 45556666666666666666665

...

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.02  E-value=1.2e-06  Score=79.04  Aligned_cols=84  Identities=15%  Similarity=0.363  Sum_probs=70.2

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-CCCcceEEEEEEeCC--EEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-HTNIAELVGFCSEQG--HNI  479 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~--~~~  479 (495)
                      .++|+..+.+|+|.++.|+.|.. .+...++||.++.-.     .+...+|+++|..++ ||||++|++...+..  ...
T Consensus        37 ~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVk-----kkKIkREikIL~nL~gg~NIi~L~DiV~Dp~Sktpa  111 (338)
T KOG0668|consen   37 QDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVK-----KKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPS  111 (338)
T ss_pred             cchHHHHHHHcCccHhhHhcccccCCCceEEEeeechHH-----HHHHHHHHHHHHhccCCCCeeehhhhhcCccccCch
Confidence            45677789999999999999985 567889999997643     467899999999997 999999999998754  457


Q ss_pred             EEEEecCCCCHhh
Q 040888          480 LIYDYYRNGSLHE  492 (495)
Q Consensus       480 lv~ey~~~GsL~~  492 (495)
                      ||+||+.|-+..+
T Consensus       112 LiFE~v~n~Dfk~  124 (338)
T KOG0668|consen  112 LIFEYVNNTDFKQ  124 (338)
T ss_pred             hHhhhhccccHHH
Confidence            9999999877654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=97.99  E-value=8.6e-07  Score=81.80  Aligned_cols=85  Identities=25%  Similarity=0.428  Sum_probs=70.6

Q ss_pred             cceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCCC
Q 040888          410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGS  489 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~Gs  489 (495)
                      ..+|.+...|..|+|++. |..+++|.+..........++|..|.-.++-..||||.+++|.|.......+|..|||.|+
T Consensus       195 ~tkl~e~hsgelwrgrwq-gndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gs  273 (448)
T KOG0195|consen  195 ITKLAESHSGELWRGRWQ-GNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGS  273 (448)
T ss_pred             hhhhccCCCccccccccc-CcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchH
Confidence            456888999999999995 4445667775443333346789999999999999999999999999999999999999999


Q ss_pred             HhhhhC
Q 040888          490 LHEFLH  495 (495)
Q Consensus       490 L~~~L~  495 (495)
                      |+..||
T Consensus       274 lynvlh  279 (448)
T KOG0195|consen  274 LYNVLH  279 (448)
T ss_pred             HHHHHh
Confidence            999887

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=97.99  E-value=8.7e-06  Score=86.82  Aligned_cols=86  Identities=22%  Similarity=0.353  Sum_probs=57.2

Q ss_pred             hccCCcccceeccCCceEEEEEEcC-C----CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEE------
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKYP-D----GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF------  471 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~~-~----g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~------  471 (495)
                      ..++|...+.||+|+||.||+|++. +    +..||||++.....    .+.+..|  .+....+.+++.+...      
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~----~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~  203 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA----VEIWMNE--RVRRACPNSCADFVYGFLEPVS  203 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch----hHHHHHH--HHHhhchhhHHHHHHhhhcccc
Confidence            4678999999999999999999984 4    68999999864321    1222222  1222223333222111      


Q ss_pred             EEeCCEEEEEEEecCCCCHhhhh
Q 040888          472 CSEQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       472 ~~~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      +..++..++||||+++|+|.+++
T Consensus       204 ~~~~~~~~LV~ey~~~gsL~~~l  226 (566)
T PLN03225        204 SKKEDEYWLVWRYEGESTLADLM  226 (566)
T ss_pred             cccCCceEEEEEecCCCcHHHHH
Confidence            24556789999999999998876

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=97.96  E-value=1.9e-06  Score=80.69  Aligned_cols=85  Identities=16%  Similarity=0.251  Sum_probs=67.2

Q ss_pred             hccCCcc-cceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEe----C
Q 040888          403 ATANFAT-GRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSE----Q  475 (495)
Q Consensus       403 ~t~~f~~-~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~----~  475 (495)
                      .|++|.. .++||-|-.|+|..|..+ +++.+|+|++...       ..-.+||++--+. .|||||.++++|..    .
T Consensus        59 itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds-------~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~r  131 (400)
T KOG0604|consen   59 ITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS-------PKARREVELHWMASGHPHIVSIIDVYENSYQGR  131 (400)
T ss_pred             chhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC-------HHHHhHhhhhhhhcCCCceEEeehhhhhhccCc
Confidence            3566654 467999999999999984 5889999998643       3446788875554 79999999999865    3


Q ss_pred             CEEEEEEEecCCCCHhhhh
Q 040888          476 GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       476 ~~~~lv~ey~~~GsL~~~L  494 (495)
                      ...++|||+|+||+|+..+
T Consensus       132 kcLLiVmE~meGGeLfsri  150 (400)
T KOG0604|consen  132 KCLLIVMECMEGGELFSRI  150 (400)
T ss_pred             eeeEeeeecccchHHHHHH
Confidence            4677999999999998765

>smart00090 RIO RIO-like kinase

Probab=97.91  E-value=2.6e-05  Score=73.64  Aligned_cols=84  Identities=19%  Similarity=0.247  Sum_probs=59.2

Q ss_pred             CCcccceeccCCceEEEEEE--cCCCCEEEEEEecCcccccc----------------------cHHHHHHHHHHHhcCC
Q 040888          406 NFATGRLLGEGTIGRVYRAK--YPDGKVLAVKKIDSSHFQRA----------------------NSESFSEIVQNISRIR  461 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~--~~~g~~vavK~l~~~~~~~~----------------------~~~~f~~e~~~l~~l~  461 (495)
                      .|...+.||+|+||.||+|.  ..+|+.||+|.++.......                      ....+..|++.+.++.
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            35667899999999999998  56899999999875421100                      0123568999999997


Q ss_pred             CCC--cceEEEEEEeCCEEEEEEEecCCCCHhhh
Q 040888          462 HTN--IAELVGFCSEQGHNILIYDYYRNGSLHEF  493 (495)
Q Consensus       462 H~n--iv~l~g~~~~~~~~~lv~ey~~~GsL~~~  493 (495)
                      |..  +.+++++    ...++||||+++++|..+
T Consensus       109 ~~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~  138 (237)
T smart00090      109 EAGVPVPKPIAW----RRNVLVMEFIGGDGLPAP  138 (237)
T ss_pred             hcCCCCCeeeEe----cCceEEEEEecCCccccc
Confidence            643  3333432    235899999999887543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.91  E-value=1.1e-05  Score=54.26  Aligned_cols=36  Identities=36%  Similarity=0.545  Sum_probs=16.1

Q ss_pred             CCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCC
Q 040888          140 ELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLT  176 (495)
Q Consensus       140 ~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~  176 (495)
                      +|++|+|++|+|+ .+|..+.++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3445555555554 23334444444444444444444

...

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.90  E-value=5.3e-06  Score=78.74  Aligned_cols=92  Identities=12%  Similarity=0.240  Sum_probs=72.4

Q ss_pred             hccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccc-cHHHHHHHHHHHhc-CCCCCcceEEEEEEeCCEEE
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRA-NSESFSEIVQNISR-IRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~-~~~~f~~e~~~l~~-l~H~niv~l~g~~~~~~~~~  479 (495)
                      ..++|+...+||+|+|.+|..+.+ ++.+.+|+|++++.-.... ...-.+.|-.+... -.||.+|.|+.++..+...+
T Consensus       248 ~l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlf  327 (593)
T KOG0695|consen  248 GLQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLF  327 (593)
T ss_pred             ccccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEE
Confidence            356889999999999999999998 4578999999987533222 23334555555544 47999999999999999999


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +|.||+++|+|.-++
T Consensus       328 fvieyv~ggdlmfhm  342 (593)
T KOG0695|consen  328 FVIEYVNGGDLMFHM  342 (593)
T ss_pred             EEEEEecCcceeeeh
Confidence            999999999996543

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=97.81  E-value=4.6e-05  Score=65.75  Aligned_cols=77  Identities=17%  Similarity=0.206  Sum_probs=63.9

Q ss_pred             cceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCC--CCcceEEEEEEeCCEEEEEEEecCC
Q 040888          410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRH--TNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H--~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      .+.||+|.++.||++...+ ..+++|.......    ...+.+|+..+..++|  ..+++++++...++..++++||+++
T Consensus         3 ~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~----~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g   77 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTKD-EDYVLKINPSREK----GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEG   77 (155)
T ss_pred             ceecccccccceEEEEecC-CeEEEEecCCCCc----hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCC
Confidence            4679999999999999855 7889998865321    4578899999999977  5889999888877889999999998


Q ss_pred             CCHh
Q 040888          488 GSLH  491 (495)
Q Consensus       488 GsL~  491 (495)
                      +.+.
T Consensus        78 ~~~~   81 (155)
T cd05120          78 ETLD   81 (155)
T ss_pred             eecc
Confidence            8764

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=97.80  E-value=1.7e-05  Score=77.73  Aligned_cols=90  Identities=17%  Similarity=0.328  Sum_probs=75.0

Q ss_pred             HHHhccCCcccceeccCCceEEEEEEcC----CCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEe
Q 040888          400 LLTATANFATGRLLGEGTIGRVYRAKYP----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSE  474 (495)
Q Consensus       400 ~~~~t~~f~~~~~iG~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~  474 (495)
                      +....+.|...++||+|.|++||++.+.    ....||+|.+.....    ......|+++|..+ .|.||+++.+++..
T Consensus        31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~----p~ri~~El~~L~~~gG~~ni~~~~~~~rn  106 (418)
T KOG1167|consen   31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSS----PSRILNELEMLYRLGGSDNIIKLNGCFRN  106 (418)
T ss_pred             hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccC----chHHHHHHHHHHHhccchhhhcchhhhcc
Confidence            4444567888999999999999999873    467899999976432    45688999999998 58999999999999


Q ss_pred             CCEEEEEEEecCCCCHhhh
Q 040888          475 QGHNILIYDYYRNGSLHEF  493 (495)
Q Consensus       475 ~~~~~lv~ey~~~GsL~~~  493 (495)
                      ++...+|+||++.-+-.++
T Consensus       107 nd~v~ivlp~~~H~~f~~l  125 (418)
T KOG1167|consen  107 NDQVAIVLPYFEHDRFRDL  125 (418)
T ss_pred             CCeeEEEecccCccCHHHH
Confidence            9999999999998776654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.78  E-value=1.7e-05  Score=87.87  Aligned_cols=126  Identities=25%  Similarity=0.311  Sum_probs=82.9

Q ss_pred             CEeEEEcCCCCCccccccccCCCCCCcEEECcCCCC-CCCCCCCC---CCCCcEEECcCCcCCCCcchhccCCCCCcEEE
Q 040888           70 SVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNL-KDSIPYQL---PPNLKHLDLSENQFSGTVPYSISQMSELKYLN  145 (495)
Q Consensus        70 ~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l-~g~~p~~~---~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  145 (495)
                      .+..+.+.+|.+.-... . ...+.|++|-+..|.- ...++..+   .+.|+.|||++|.=-+.+|..++.|-+|++|+
T Consensus       524 ~~rr~s~~~~~~~~~~~-~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHIAG-S-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             heeEEEEeccchhhccC-C-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            34455555555432211 1 1223577777777752 12333322   27788888887766677888888888888888


Q ss_pred             cccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCc
Q 040888          146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQ  198 (495)
Q Consensus       146 L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~  198 (495)
                      |++..++ .+|..+.++..|.+||+..+.-...+|.....+.+|++|.+..-.
T Consensus       602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            8888877 778888888888888888777655666666668888888776554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=1.1e-05  Score=75.62  Aligned_cols=83  Identities=29%  Similarity=0.433  Sum_probs=64.5

Q ss_pred             CCEeEEEcCCCCCcc--ccccccCCCCCCcEEECcCCCCCCCCCCC-CC-CCCcEEECcCCcCCCC-cchhccCCCCCcE
Q 040888           69 SSVTEIKLSGLGLNG--QLGYQLTNLKSVSYLDVSNNNLKDSIPYQ-LP-PNLKHLDLSENQFSGT-VPYSISQMSELKY  143 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g--~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~-~~-~~L~~L~Ls~N~l~g~-~p~~~~~l~~L~~  143 (495)
                      ++|..+||.+|.++.  .+..-+.+|+.|++|+|+.|.+...|-.. ++ .+|+.|-|.+..+.-. ....+..++.++.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            578999999999884  56667889999999999999998655433 34 7899999988887632 3445677888888


Q ss_pred             EEcccCcC
Q 040888          144 LNLGSNQL  151 (495)
Q Consensus       144 L~L~~N~l  151 (495)
                      |.+|.|++
T Consensus       151 lHmS~N~~  158 (418)
T KOG2982|consen  151 LHMSDNSL  158 (418)
T ss_pred             hhhccchh
Confidence            88888854

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.75  E-value=0.00011  Score=73.48  Aligned_cols=131  Identities=14%  Similarity=0.202  Sum_probs=75.2

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCC-cCCCCcchhccCCCCCcEEEcc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSEN-QFSGTVPYSISQMSELKYLNLG  147 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N-~l~g~~p~~~~~l~~L~~L~L~  147 (495)
                      ..++.|+++++.|+.. |.   --++|+.|+++++.--..+|..++++|++|++++| .+. .+|.      +|+.|+++
T Consensus        52 ~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~  120 (426)
T PRK15386         52 RASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS-GLPE------SVRSLEIK  120 (426)
T ss_pred             cCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccc-cccc------ccceEEeC
Confidence            4577888888876643 31   12358888888743334677777788888888887 554 4553      46677777


Q ss_pred             cCcCC--CccchhhhCCCCCcEEEccCCc-CC-CcCcccccCCCCCCEEeccCCcccccccccCCccCcEEEeecC
Q 040888          148 SNQLN--GQLSDMFQKNEKLETLDLSKNQ-LT-GELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENN  219 (495)
Q Consensus       148 ~N~l~--g~~p~~~~~l~~L~~L~ls~N~-l~-g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~L~~l~l~~N  219 (495)
                      .|.+.  +.+|.      +|+.|.+.+++ .. ..+|..+  -++|++|++++|.....+..+. ..|+.|+++.|
T Consensus       121 ~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~LP~~LP-~SLk~L~ls~n  187 (426)
T PRK15386        121 GSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNIILPEKLP-ESLQSITLHIE  187 (426)
T ss_pred             CCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCcccCccccc-ccCcEEEeccc
Confidence            66643  23333      35566654332 11 1112111  1468888888776542221111 12777777766

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=97.67  E-value=3.3e-05  Score=81.79  Aligned_cols=81  Identities=21%  Similarity=0.370  Sum_probs=65.3

Q ss_pred             CcccceeccCCceE-EEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEEEEe
Q 040888          407 FATGRLLGEGTIGR-VYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       407 f~~~~~iG~G~~g~-Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      |...+++|.|+.|+ ||+|.+ +|+.||||++-.+.     .....+||..|+.- +|||||+.++.-.++.+.|+..|.
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~e~-----~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalEL  584 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVY-EGREVAVKRLLEEF-----FDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALEL  584 (903)
T ss_pred             eccHHHcccCCCCcEEEEEee-CCceehHHHHhhHh-----HHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehH
Confidence            45567889999874 799999 78899999985432     33457899999888 699999988777778899999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      |. -+|.+++
T Consensus       585 C~-~sL~dli  593 (903)
T KOG1027|consen  585 CA-CSLQDLI  593 (903)
T ss_pred             hh-hhHHHHH
Confidence            95 4888876

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=97.67  E-value=7e-05  Score=77.27  Aligned_cols=85  Identities=18%  Similarity=0.230  Sum_probs=55.4

Q ss_pred             cceeccCCceEEEEEEcCCCCEEEEEEecCcccccc--------------------------------------cHHHHH
Q 040888          410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRA--------------------------------------NSESFS  451 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~--------------------------------------~~~~f~  451 (495)
                      .+.||.|++|.||+|++++|+.||||+.+......-                                      .+-+|.
T Consensus       122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            467999999999999999999999999876421000                                      001245


Q ss_pred             HHHHHHhcC----CCCCcceEEEEE-EeCCEEEEEEEecCCCCHhhhh
Q 040888          452 EIVQNISRI----RHTNIAELVGFC-SEQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       452 ~e~~~l~~l----~H~niv~l~g~~-~~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      +|.+.+.++    +|.+-|.+-..+ ......++||||+++++|.++.
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~  249 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIA  249 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHH
Confidence            566555554    233333322233 2234578999999999987653

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.64  E-value=4.4e-05  Score=84.68  Aligned_cols=129  Identities=25%  Similarity=0.300  Sum_probs=102.3

Q ss_pred             CCCCCCcEEECcCCCCCCCCCCCCC-CCCcEEECcCCc--CCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCc
Q 040888           90 TNLKSVSYLDVSNNNLKDSIPYQLP-PNLKHLDLSENQ--FSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLE  166 (495)
Q Consensus        90 ~~l~~L~~L~Ls~N~l~g~~p~~~~-~~L~~L~Ls~N~--l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~  166 (495)
                      .+....+...+-+|.+. .++.... ++|+.|-+..|.  +.-..+..|..++.|++|||++|.=-+.+|..++.+-+|+
T Consensus       520 ~~~~~~rr~s~~~~~~~-~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIE-HIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             cchhheeEEEEeccchh-hccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            34467788888888876 3333333 689999999997  5544455688899999999999987789999999999999


Q ss_pred             EEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCC
Q 040888          167 TLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNK  220 (495)
Q Consensus       167 ~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~  220 (495)
                      +|+|++..++ .+|..+.+|..|.+|++..+.-...+ .....+. |++|.+..-.
T Consensus       599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            9999999998 89999999999999999988755444 3334354 8888875543

>cd05119 RIO RIO kinase family, catalytic domain

Probab=97.62  E-value=0.00014  Score=65.95  Aligned_cols=76  Identities=18%  Similarity=0.340  Sum_probs=49.4

Q ss_pred             cceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHH----------------------HHHHHHHHhcCCCCC--c
Q 040888          410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSES----------------------FSEIVQNISRIRHTN--I  465 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~----------------------f~~e~~~l~~l~H~n--i  465 (495)
                      .+.||+|+||.||+|...+++.||||++............                      ...|.+.+.++.+..  +
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            4679999999999999988999999998754221111111                      134555566654443  3


Q ss_pred             ceEEEEEEeCCEEEEEEEecCCCC
Q 040888          466 AELVGFCSEQGHNILIYDYYRNGS  489 (495)
Q Consensus       466 v~l~g~~~~~~~~~lv~ey~~~Gs  489 (495)
                      .+.+++    ...++||||+++|.
T Consensus        82 ~~~~~~----~~~~lv~e~~~g~~  101 (187)
T cd05119          82 PKPIDL----NRHVLVMEFIGGDG  101 (187)
T ss_pred             CceEec----CCCEEEEEEeCCCC
Confidence            333332    23589999999853

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK12274 serine/threonine protein kinase; Provisional

Probab=97.59  E-value=0.0003  Score=64.36  Aligned_cols=80  Identities=9%  Similarity=0.101  Sum_probs=59.6

Q ss_pred             ccceeccCCceEEEEEEcCCCCEEEEEEecCccccc--ccHHHHHHHHHHHhcCC-CCCcceEEEEEEeCCEEEEEEEec
Q 040888          409 TGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQR--ANSESFSEIVQNISRIR-HTNIAELVGFCSEQGHNILIYDYY  485 (495)
Q Consensus       409 ~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~--~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~lv~ey~  485 (495)
                      ....|++|+||+||.+.- .+..++.+.+.......  -....|.+|+++|.+++ |+++++++++    +..+++|||+
T Consensus         6 ~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmeyI   80 (218)
T PRK12274          6 VNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSYL   80 (218)
T ss_pred             cceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEeee
Confidence            457899999999996665 66777777776543210  11225789999999995 5889999886    3468999999


Q ss_pred             CCCCHhhh
Q 040888          486 RNGSLHEF  493 (495)
Q Consensus       486 ~~GsL~~~  493 (495)
                      ++.+|.+.
T Consensus        81 ~G~~L~~~   88 (218)
T PRK12274         81 AGAAMYQR   88 (218)
T ss_pred             cCccHHhh
Confidence            99888654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.57  E-value=0.00039  Score=69.73  Aligned_cols=112  Identities=21%  Similarity=0.332  Sum_probs=73.5

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCC-CCCCCCCCCCCCCCcEEECcCCcCC--CCcchhccCCCCCcEEE
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNN-NLKDSIPYQLPPNLKHLDLSENQFS--GTVPYSISQMSELKYLN  145 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N-~l~g~~p~~~~~~L~~L~Ls~N~l~--g~~p~~~~~l~~L~~L~  145 (495)
                      .+|+.|.+.++.--..+|..+  .++|+.|++++| .+.     .++++|+.|+|+.|...  +.+|.      +|+.|.
T Consensus        72 ~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-----sLP~sLe~L~L~~n~~~~L~~LPs------sLk~L~  138 (426)
T PRK15386         72 NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-----GLPESVRSLEIKGSATDSIKNVPN------GLTSLS  138 (426)
T ss_pred             CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-----ccccccceEEeCCCCCcccccCcc------hHhhee
Confidence            369999998744334555544  258999999998 553     34578999999887754  23443      466777


Q ss_pred             cccCcCC--CccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCc
Q 040888          146 LGSNQLN--GQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQ  198 (495)
Q Consensus       146 L~~N~l~--g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~  198 (495)
                      +.+++..  ..+|..+  .++|++|++++|... .+|..+.  .+|+.|+++.|.
T Consensus       139 I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        139 INSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             cccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence            7543311  1122211  267999999998876 3454444  589999998874

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=97.54  E-value=4.9e-05  Score=70.53  Aligned_cols=86  Identities=14%  Similarity=0.273  Sum_probs=67.3

Q ss_pred             cCCcccceeccCCceEEEEEEcCC-CCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEE-EEeCCEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGF-CSEQGHNILI  481 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~-~~~~~~~~lv  481 (495)
                      +.|...+.+|+|.||.+..++++. .+.+++|.......   ..++|.+|..---.+ .|.||+.-++. +...+..+++
T Consensus        24 d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~t---t~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~  100 (378)
T KOG1345|consen   24 DVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQT---TQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFV  100 (378)
T ss_pred             hhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchh---hHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEe
Confidence            346778999999999999999964 77899999876543   257899987654444 68999976554 4556777899


Q ss_pred             EEecCCCCHhhh
Q 040888          482 YDYYRNGSLHEF  493 (495)
Q Consensus       482 ~ey~~~GsL~~~  493 (495)
                      +||+|.|||..-
T Consensus       101 qE~aP~gdL~sn  112 (378)
T KOG1345|consen  101 QEFAPRGDLRSN  112 (378)
T ss_pred             eccCccchhhhh
Confidence            999999999764

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=97.52  E-value=4.9e-05  Score=79.66  Aligned_cols=88  Identities=14%  Similarity=0.225  Sum_probs=56.9

Q ss_pred             cCCcccceeccCCceEEEEEEcCC-CCEEEEEEecCccccc--------------------------------ccH----
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQR--------------------------------ANS----  447 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~--------------------------------~~~----  447 (495)
                      .+|+. +.||+|++|.||+|++++ |+.||||+++......                                ...    
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~  198 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLH  198 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHH
Confidence            45665 789999999999999987 9999999997542100                                001    


Q ss_pred             --HHHHHHHHHHhcCC----CCCcceEEEEEEe-CCEEEEEEEecCCCCHhhh
Q 040888          448 --ESFSEIVQNISRIR----HTNIAELVGFCSE-QGHNILIYDYYRNGSLHEF  493 (495)
Q Consensus       448 --~~f~~e~~~l~~l~----H~niv~l~g~~~~-~~~~~lv~ey~~~GsL~~~  493 (495)
                        -+|.+|+.-+.+++    +.+.+.+=..+.+ ....++||||++|+.+.++
T Consensus       199 ~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~  251 (537)
T PRK04750        199 DELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDV  251 (537)
T ss_pred             HhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhH
Confidence              12444554444442    4433433333322 3457899999999998763

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.50  E-value=0.00011  Score=68.23  Aligned_cols=153  Identities=25%  Similarity=0.395  Sum_probs=74.5

Q ss_pred             CCEeEEEcCCCCCccc----cccccCCCCCCcEEECcCCCCCCC----CCCCC--------C-CCCcEEECcCCcCCCCc
Q 040888           69 SSVTEIKLSGLGLNGQ----LGYQLTNLKSVSYLDVSNNNLKDS----IPYQL--------P-PNLKHLDLSENQFSGTV  131 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~----~~~~~~~l~~L~~L~Ls~N~l~g~----~p~~~--------~-~~L~~L~Ls~N~l~g~~  131 (495)
                      ..++.++|++|-+...    +...+.+-.+|+..++|.-. +|.    +|..+        . |.|+.++||.|.|.-..
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            3567777777776543    23334445556666665432 222    22111        1 56666666666666555


Q ss_pred             chh----ccCCCCCcEEEcccCcCC----Cccchhhh---------CCCCCcEEEccCCcCCCcCcc----cccCCCCCC
Q 040888          132 PYS----ISQMSELKYLNLGSNQLN----GQLSDMFQ---------KNEKLETLDLSKNQLTGELPR----SFASLSSLK  190 (495)
Q Consensus       132 p~~----~~~l~~L~~L~L~~N~l~----g~~p~~~~---------~l~~L~~L~ls~N~l~g~~p~----~~~~l~~L~  190 (495)
                      |..    ++.-+.|..|.|++|.+.    |.|..++.         +-+.|+.+....|+|......    .+..-..|+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            543    344566666666666653    11221111         234566666666666421110    111223566


Q ss_pred             EEeccCCccccc--c-cc---cCC-ccCcEEEeecCCCc
Q 040888          191 KLYLQNNQFTGS--I-NV---LGK-LPLDELNVENNKFS  222 (495)
Q Consensus       191 ~L~l~~N~l~g~--~-~~---~~~-~~L~~l~l~~N~l~  222 (495)
                      .+.+.+|.+.-.  . -.   +.. ..|+.||+.+|.|+
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            666666655411  1 00   111 12566666666665

>PHA02882 putative serine/threonine kinase; Provisional

Probab=97.48  E-value=0.00047  Score=67.36  Aligned_cols=82  Identities=17%  Similarity=0.218  Sum_probs=53.2

Q ss_pred             cCCcccceeccCCceEEEEEEcCC----CCEEEEEEecCccccccc---------HHHHHHHHHHHhcCCCCCcceEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPD----GKVLAVKKIDSSHFQRAN---------SESFSEIVQNISRIRHTNIAELVGF  471 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~----g~~vavK~l~~~~~~~~~---------~~~f~~e~~~l~~l~H~niv~l~g~  471 (495)
                      +.|...+.||+|+||.||+|...+    +..+|+|...........         ......+...+..++|+|+++++++
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~   91 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC   91 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence            457778999999999999999754    345666654322111000         1122334455677899999999998


Q ss_pred             EEeCC----EEEEEEEecC
Q 040888          472 CSEQG----HNILIYDYYR  486 (495)
Q Consensus       472 ~~~~~----~~~lv~ey~~  486 (495)
                      +....    ..++++|+..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~  110 (294)
T PHA02882         92 GSFKRCRMYYRFILLEKLV  110 (294)
T ss_pred             eeEecCCceEEEEEEehhc
Confidence            76543    3467777764

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.47  E-value=6.9e-06  Score=75.99  Aligned_cols=87  Identities=21%  Similarity=0.360  Sum_probs=65.8

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC-----EEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG-----HNI  479 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~-----~~~  479 (495)
                      +.+..+.||-|+||.||..+. ++|+.||.|++..-...-...+.+.+|++++...+|.|+...++......     +.|
T Consensus        54 Di~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiY  133 (449)
T KOG0664|consen   54 DIQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELY  133 (449)
T ss_pred             cCCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHH
Confidence            445678999999999999998 57999999998643221123577889999999999999999888776542     456


Q ss_pred             EEEEecCCCCHhhh
Q 040888          480 LIYDYYRNGSLHEF  493 (495)
Q Consensus       480 lv~ey~~~GsL~~~  493 (495)
                      +|.|.|.. ||+..
T Consensus       134 V~TELmQS-DLHKI  146 (449)
T KOG0664|consen  134 VLTELMQS-DLHKI  146 (449)
T ss_pred             HHHHHHHh-hhhhe
Confidence            77777743 55543

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=97.43  E-value=0.00076  Score=65.61  Aligned_cols=86  Identities=31%  Similarity=0.551  Sum_probs=71.5

Q ss_pred             CcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccc-cHHHHHHHHHHHhcCCCC-CcceEEEEEEeCCEEEEEEEe
Q 040888          407 FATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRA-NSESFSEIVQNISRIRHT-NIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~-~~~~f~~e~~~l~~l~H~-niv~l~g~~~~~~~~~lv~ey  484 (495)
                      |.....||.|+||.||++...  ..+++|.+........ ..+.|.+|+..+..+.|+ +++++..++......++++||
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   79 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEY   79 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEec
Confidence            445678999999999999987  7889999976544322 367899999999999988 799999999777778999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +.++++.+++
T Consensus        80 ~~~~~l~~~~   89 (384)
T COG0515          80 VDGGSLEDLL   89 (384)
T ss_pred             CCCCcHHHHH
Confidence            9999998553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.42  E-value=0.00031  Score=62.64  Aligned_cols=100  Identities=26%  Similarity=0.298  Sum_probs=53.4

Q ss_pred             CCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCc-CcccccCCCCCCEEec
Q 040888          116 NLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGE-LPRSFASLSSLKKLYL  194 (495)
Q Consensus       116 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~-~p~~~~~l~~L~~L~l  194 (495)
                      +...+||++|.+-.  -..|..++.|.+|.|++|+|+..-|..-.-+++|..|.|.+|.|... --.-+..|++|++|-+
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            44455555555531  12344556666666666666655555444455566666666665421 0112456677777777


Q ss_pred             cCCcccccc----cccCCcc-CcEEEee
Q 040888          195 QNNQFTGSI----NVLGKLP-LDELNVE  217 (495)
Q Consensus       195 ~~N~l~g~~----~~~~~~~-L~~l~l~  217 (495)
                      -+|..+..-    -.+..++ |+.||.+
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehh
Confidence            777665432    1233444 5666554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=1.1e-05  Score=75.73  Aligned_cols=158  Identities=23%  Similarity=0.260  Sum_probs=89.2

Q ss_pred             CEeEEEcCCCCCcc-ccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCc-CCCC-cchhccCCCCCcEE
Q 040888           70 SVTEIKLSGLGLNG-QLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQ-FSGT-VPYSISQMSELKYL  144 (495)
Q Consensus        70 ~v~~l~L~~n~l~g-~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~-l~g~-~p~~~~~l~~L~~L  144 (495)
                      +|+.+||+.-.++- ++-.-+..++.|+.|.|.++++.+.|-..+.  .+|+.|||+..+ |+.. ..--+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            57777777777653 2333456677788888888888776665555  678888887643 3311 11235677888888


Q ss_pred             EcccCcCCCccchh-hhC-CCCCcEEEccCCc---CCCcCcccccCCCCCCEEeccCCcc-ccc-ccccCCcc-CcEEEe
Q 040888          145 NLGSNQLNGQLSDM-FQK-NEKLETLDLSKNQ---LTGELPRSFASLSSLKKLYLQNNQF-TGS-INVLGKLP-LDELNV  216 (495)
Q Consensus       145 ~L~~N~l~g~~p~~-~~~-l~~L~~L~ls~N~---l~g~~p~~~~~l~~L~~L~l~~N~l-~g~-~~~~~~~~-L~~l~l  216 (495)
                      +|+.+.++...-.. ..+ -.+|+.|+|++..   ...-+..-...+++|..|||+.|.- +.. +..+..++ |++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            88888775433111 111 1345556665532   1111222234567777777777653 221 24444455 677666


Q ss_pred             ecCCCcccCchhh
Q 040888          217 ENNKFSGWVPEEL  229 (495)
Q Consensus       217 ~~N~l~g~~p~~l  229 (495)
                      +.+.  +.+|..+
T Consensus       346 sRCY--~i~p~~~  356 (419)
T KOG2120|consen  346 SRCY--DIIPETL  356 (419)
T ss_pred             hhhc--CCChHHe
Confidence            6553  4455443

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.26  E-value=0.00045  Score=69.20  Aligned_cols=86  Identities=16%  Similarity=0.338  Sum_probs=67.6

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-----C---CCcceEEEEEEeC
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-----H---TNIAELVGFCSEQ  475 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-----H---~niv~l~g~~~~~  475 (495)
                      +.|-..++||=|.|++||.|... +.+.||+|+.+...   ...+.-+.||++|++++     |   ..||+|+++|...
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAq---hYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~Fkhs  154 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQ---HYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHS  154 (590)
T ss_pred             ceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhh---HHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceec
Confidence            45777899999999999999874 57799999987543   33566788999999874     2   4699999999764


Q ss_pred             ----CEEEEEEEecCCCCHhhhh
Q 040888          476 ----GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       476 ----~~~~lv~ey~~~GsL~~~L  494 (495)
                          ...+||+||. +-+|..+|
T Consensus       155 GpNG~HVCMVfEvL-GdnLLklI  176 (590)
T KOG1290|consen  155 GPNGQHVCMVFEVL-GDNLLKLI  176 (590)
T ss_pred             CCCCcEEEEEehhh-hhHHHHHH
Confidence                3678999998 55776665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.18  E-value=0.00071  Score=60.41  Aligned_cols=105  Identities=25%  Similarity=0.264  Sum_probs=64.7

Q ss_pred             CCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCC--ccchhhhCCCCCcEEEcc
Q 040888           94 SVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNG--QLSDMFQKNEKLETLDLS  171 (495)
Q Consensus        94 ~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g--~~p~~~~~l~~L~~L~ls  171 (495)
                      ....+||++|.+....-....+.|..|.|++|+|+..-|.--.-+++|..|.|.+|+|.-  .+. -+..++.|++|.+-
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~-pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD-PLASCPKLEYLTLL  121 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc-hhccCCccceeeec
Confidence            456677777766532212223677777777777774444433445667778888877642  111 24567788888888


Q ss_pred             CCcCCCcC---cccccCCCCCCEEeccCCcc
Q 040888          172 KNQLTGEL---PRSFASLSSLKKLYLQNNQF  199 (495)
Q Consensus       172 ~N~l~g~~---p~~~~~l~~L~~L~l~~N~l  199 (495)
                      +|..+..-   ---+..+++|+.||.+.=..
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            88876321   12356788999999765443

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=97.17  E-value=0.00025  Score=63.47  Aligned_cols=85  Identities=20%  Similarity=0.282  Sum_probs=67.0

Q ss_pred             CcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhc-CCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          407 FATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISR-IRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~-l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +.....||+|++|.|-+-++ .+|+..|||+++..-. .+..++...|+.+..+ ...|.+|+++|.+......++.||.
T Consensus        48 L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn-~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME~  126 (282)
T KOG0984|consen   48 LVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVN-SQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICMEL  126 (282)
T ss_pred             hhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcC-hHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHHH
Confidence            33457799999999988777 5799999999976532 2345677888887555 5899999999999999999999999


Q ss_pred             cCCCCHhhh
Q 040888          485 YRNGSLHEF  493 (495)
Q Consensus       485 ~~~GsL~~~  493 (495)
                      |.- ||+.+
T Consensus       127 M~t-Sldkf  134 (282)
T KOG0984|consen  127 MDT-SLDKF  134 (282)
T ss_pred             hhh-hHHHH
Confidence            964 66543

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=97.15  E-value=0.00017  Score=67.11  Aligned_cols=76  Identities=16%  Similarity=0.310  Sum_probs=61.6

Q ss_pred             cceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-CCCcceEEEEEEeCCEEEEEEEecC
Q 040888          410 GRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-HTNIAELVGFCSEQGHNILIYDYYR  486 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~lv~ey~~  486 (495)
                      ...||.|..|.|+++.++ .|...|||.+...... ...++.+..++++.+.+ .|.||+.+|||..+...++.||.|.
T Consensus        97 l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nk-ee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelMs  174 (391)
T KOG0983|consen   97 LGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNK-EENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELMS  174 (391)
T ss_pred             HHhhcCCCccceEEEEEcccceEEEEEeecccCCH-HHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHHH
Confidence            467999999999999985 5889999999875432 23456777788877764 8999999999999988888888774

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=97.05  E-value=0.00035  Score=67.99  Aligned_cols=88  Identities=22%  Similarity=0.333  Sum_probs=68.8

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCC--C----CcceEEEEEEeCC
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRH--T----NIAELVGFCSEQG  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H--~----niv~l~g~~~~~~  476 (495)
                      ++.|.....+|+|.||+|-++... .+..||||+++.-..   ..+.-.-|++++.++.+  |    -+|.+.+++.-.+
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~k---YreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrg  164 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDK---YREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRG  164 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHH---HhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccC
Confidence            566778899999999999999874 478999999976432   24556778999999832  2    3677888888889


Q ss_pred             EEEEEEEecCCCCHhhhhC
Q 040888          477 HNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L~  495 (495)
                      ..++|+|.| +-|++++|+
T Consensus       165 hiCivfell-G~S~~dFlk  182 (415)
T KOG0671|consen  165 HICIVFELL-GLSTFDFLK  182 (415)
T ss_pred             ceEEEEecc-ChhHHHHhc
Confidence            999999988 447888763

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=96.96  E-value=0.00048  Score=71.26  Aligned_cols=85  Identities=20%  Similarity=0.228  Sum_probs=68.2

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv  481 (495)
                      ++.|.....+|+|+|+.|-++.. ++++..+||.+.+...      +-.+|+.++... +||||+++.+.|..+...++|
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~------~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v  394 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRAD------DNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLV  394 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheecccccc------ccccccchhhhhcCCCcceeecceecCCceeeee
Confidence            45666677799999999999988 5688899999976521      234566555554 799999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      ||.+.+|.+.+.+
T Consensus       395 ~e~l~g~ell~ri  407 (612)
T KOG0603|consen  395 MELLDGGELLRRI  407 (612)
T ss_pred             ehhccccHHHHHH
Confidence            9999998876643

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=96.91  E-value=0.0036  Score=59.18  Aligned_cols=84  Identities=8%  Similarity=0.137  Sum_probs=60.1

Q ss_pred             cceec-cCCceEEEEEEcCCCCEEEEEEecCccc-----------ccccHHHHHHHHHHHhcCCCCCc--ceEEEEEEeC
Q 040888          410 GRLLG-EGTIGRVYRAKYPDGKVLAVKKIDSSHF-----------QRANSESFSEIVQNISRIRHTNI--AELVGFCSEQ  475 (495)
Q Consensus       410 ~~~iG-~G~~g~Vy~~~~~~g~~vavK~l~~~~~-----------~~~~~~~f~~e~~~l~~l~H~ni--v~l~g~~~~~  475 (495)
                      ..+|| .|+.|+||..... +..++||.......           .......+.+|++++.+++|+++  ++.++++...
T Consensus        36 ~~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         36 ARVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             CceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            46788 8999999999885 66788988753211           01123467889999999999885  6777775443


Q ss_pred             C-E---EEEEEEecCC-CCHhhhh
Q 040888          476 G-H---NILIYDYYRN-GSLHEFL  494 (495)
Q Consensus       476 ~-~---~~lv~ey~~~-GsL~~~L  494 (495)
                      . .   .++|+||+++ ++|.+++
T Consensus       115 ~~~~~~~~lV~e~l~G~~~L~~~l  138 (239)
T PRK01723        115 HGLFYRADILIERIEGARDLVALL  138 (239)
T ss_pred             cCcceeeeEEEEecCCCCCHHHHH
Confidence            2 2   2599999997 6887764

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=96.90  E-value=0.0015  Score=60.01  Aligned_cols=84  Identities=19%  Similarity=0.310  Sum_probs=63.8

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCC-CCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRH-TNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H-~niv~l~g~~~~~~~~~lv~  482 (495)
                      +.|...+.||+|+||.+|.|.. .+|..||+|.=.....    ..+...|.++-.-++| ..|..+.-|..+...-.+||
T Consensus        15 gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~----hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVM   90 (341)
T KOG1163|consen   15 GKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAK----HPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVM   90 (341)
T ss_pred             cceEEEEeecCCchhheeeeeeccCCceEEEEeecccCC----CcchhHHHHHHHHhccCCCCchhhhhccccccceeee
Confidence            4677889999999999999986 6799999998654322    2356677777777765 45666666777778889999


Q ss_pred             EecCCCCHhhh
Q 040888          483 DYYRNGSLHEF  493 (495)
Q Consensus       483 ey~~~GsL~~~  493 (495)
                      |.. +-+|.+.
T Consensus        91 dLL-GPsLEdL  100 (341)
T KOG1163|consen   91 DLL-GPSLEDL  100 (341)
T ss_pred             ecc-CccHHHH
Confidence            987 5677664

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=96.83  E-value=0.0021  Score=59.55  Aligned_cols=82  Identities=11%  Similarity=0.249  Sum_probs=61.6

Q ss_pred             ceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCC--CcceEEEEEEeCC---EEEEEEEec
Q 040888          411 RLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT--NIAELVGFCSEQG---HNILIYDYY  485 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~--niv~l~g~~~~~~---~~~lv~ey~  485 (495)
                      ..|+.|..+.+|+++..+|..+++|........ .....+..|++++..+++.  ++.+++.++....   ..++||||+
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~-~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i   82 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALL-PSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERV   82 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccC-cccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEe
Confidence            568999999999999877788999997654321 1245688999999998764  4566777776542   568999999


Q ss_pred             CCCCHhhh
Q 040888          486 RNGSLHEF  493 (495)
Q Consensus       486 ~~GsL~~~  493 (495)
                      +++++.+.
T Consensus        83 ~G~~l~~~   90 (223)
T cd05154          83 DGRVLRDR   90 (223)
T ss_pred             CCEecCCC
Confidence            99877653

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.80  E-value=0.00044  Score=74.95  Aligned_cols=109  Identities=16%  Similarity=0.256  Sum_probs=51.1

Q ss_pred             CCCcEEECcCCcCCC-CcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCC-cCcccccCCCCCCEE
Q 040888          115 PNLKHLDLSENQFSG-TVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTG-ELPRSFASLSSLKKL  192 (495)
Q Consensus       115 ~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~~L  192 (495)
                      |+|+.|.+++=.|.. ..-.-..++++|..||+|+.+++..  ..++++.+|+.|.+.+=.+.. ..-..+.+|++|+.|
T Consensus       148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL  225 (699)
T KOG3665|consen  148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL  225 (699)
T ss_pred             cccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence            555555555544432 1222234455555555555555432  334555555555554444331 111234456666666


Q ss_pred             eccCCcccccc-------cccCCcc-CcEEEeecCCCcccC
Q 040888          193 YLQNNQFTGSI-------NVLGKLP-LDELNVENNKFSGWV  225 (495)
Q Consensus       193 ~l~~N~l~g~~-------~~~~~~~-L~~l~l~~N~l~g~~  225 (495)
                      |+|........       ..-..+| |+.||.|+..++..+
T Consensus       226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             eccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            66655543221       1112234 666666666555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.78  E-value=0.00022  Score=67.22  Aligned_cols=150  Identities=22%  Similarity=0.216  Sum_probs=75.9

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCC-CCCCCCCCCC---CCCCcEEECcCCcCCCCcchh-cc-CCCCCc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNN-NLKDSIPYQL---PPNLKHLDLSENQFSGTVPYS-IS-QMSELK  142 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N-~l~g~~p~~~---~~~L~~L~Ls~N~l~g~~p~~-~~-~l~~L~  142 (495)
                      ..++.|.|.++.|...+-..+..-.+|+.|||+.. .|+..--..+   .+.|+.|+|+-+.++.+.-.. +. --++|+
T Consensus       210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~  289 (419)
T KOG2120|consen  210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT  289 (419)
T ss_pred             HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence            35666777777777777666666667777777654 2321100000   145666666666555322111 11 113555


Q ss_pred             EEEcccCc---CCCccchhhhCCCCCcEEEccCCc-CCCcCcccccCCCCCCEEeccCCcccccc--cccCCcc-CcEEE
Q 040888          143 YLNLGSNQ---LNGQLSDMFQKNEKLETLDLSKNQ-LTGELPRSFASLSSLKKLYLQNNQFTGSI--NVLGKLP-LDELN  215 (495)
Q Consensus       143 ~L~L~~N~---l~g~~p~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~l~~L~~L~l~~N~l~g~~--~~~~~~~-L~~l~  215 (495)
                      .|+|++..   ....+......+++|..||||+|. |+...-..|..++.|++|.|+.+..--.-  -.+...| |.+||
T Consensus       290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLd  369 (419)
T KOG2120|consen  290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLD  369 (419)
T ss_pred             hhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEE
Confidence            66666542   112233334556666666666654 44333344556666666666655432111  1233334 66666


Q ss_pred             eec
Q 040888          216 VEN  218 (495)
Q Consensus       216 l~~  218 (495)
                      +.+
T Consensus       370 v~g  372 (419)
T KOG2120|consen  370 VFG  372 (419)
T ss_pred             ecc
Confidence            643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.72  E-value=0.0012  Score=61.25  Aligned_cols=38  Identities=39%  Similarity=0.633  Sum_probs=19.1

Q ss_pred             CCCcEEECcCC--cCCCCcchhccCCCCCcEEEcccCcCC
Q 040888          115 PNLKHLDLSEN--QFSGTVPYSISQMSELKYLNLGSNQLN  152 (495)
Q Consensus       115 ~~L~~L~Ls~N--~l~g~~p~~~~~l~~L~~L~L~~N~l~  152 (495)
                      ++|+.|++|.|  ..++.++.-...+++|++|+|++|++.
T Consensus        65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             chhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            45555555555  333444433344455555555555543

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=96.60  E-value=0.0061  Score=60.47  Aligned_cols=85  Identities=19%  Similarity=0.323  Sum_probs=63.5

Q ss_pred             CCcccceeccCCceEEEEEEcCCC--CEEEEEEecCcccccccHHHHHHHHHHHhcCCC----CCcceEEEEE-EeCCEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYPDG--KVLAVKKIDSSHFQRANSESFSEIVQNISRIRH----TNIAELVGFC-SEQGHN  478 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~~g--~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H----~niv~l~g~~-~~~~~~  478 (495)
                      .|...+.||+|+||.||.+.....  ..+|+|.-.......  ...+..|+.++..+.+    +++..+++.. ....+.
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~--~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~   96 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSK--PSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFN   96 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCC--CccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCcee
Confidence            677889999999999999997543  478888765532211  1267788888888863    5788888888 477788


Q ss_pred             EEEEEecCCCCHhhh
Q 040888          479 ILIYDYYRNGSLHEF  493 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~  493 (495)
                      ++||+.. +-+|.+.
T Consensus        97 ~iVM~l~-G~sL~dl  110 (322)
T KOG1164|consen   97 FIVMSLL-GPSLEDL  110 (322)
T ss_pred             EEEEecc-CccHHHH
Confidence            9999976 5677764

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=96.57  E-value=0.0013  Score=72.63  Aligned_cols=87  Identities=24%  Similarity=0.413  Sum_probs=61.5

Q ss_pred             hccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCC---CCCcceEEEEEEeCCEEE
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR---HTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~---H~niv~l~g~~~~~~~~~  479 (495)
                      .-+.|.+...||+|+||+||+|...+|+.||+|.-+......     |.==.+++.|++   -+.|..+...+.-.+.-+
T Consensus       696 ~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WE-----fYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~  770 (974)
T KOG1166|consen  696 GGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWE-----FYICLQVMERLKPQMLPSIMHISSAHVFQNASV  770 (974)
T ss_pred             cceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCcee-----eeehHHHHHhhchhhhcchHHHHHHHccCCcce
Confidence            345677889999999999999999889999999976654321     111123344444   133444444555567778


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +|.||.+.|+|.+++
T Consensus       771 lv~ey~~~Gtlld~~  785 (974)
T KOG1166|consen  771 LVSEYSPYGTLLDLI  785 (974)
T ss_pred             eeeeccccccHHHhh
Confidence            999999999998875

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.56  E-value=0.0005  Score=64.85  Aligned_cols=83  Identities=25%  Similarity=0.354  Sum_probs=39.1

Q ss_pred             CCcEEECcCCcCCC--CcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCc-CcccccCCCCCCEE
Q 040888          116 NLKHLDLSENQFSG--TVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGE-LPRSFASLSSLKKL  192 (495)
Q Consensus       116 ~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~-~p~~~~~l~~L~~L  192 (495)
                      .++.|||.+|.|+.  +|..-+.+|+.|+.|+|+.|+++..|-..-..+.+|+.|-|.+..|.-. .-..+..++.++.|
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel  151 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL  151 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence            44445555555542  2333344555555555555555544332222344555555555444321 22234445555555


Q ss_pred             eccCCc
Q 040888          193 YLQNNQ  198 (495)
Q Consensus       193 ~l~~N~  198 (495)
                      .++.|+
T Consensus       152 HmS~N~  157 (418)
T KOG2982|consen  152 HMSDNS  157 (418)
T ss_pred             hhccch
Confidence            555553

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=96.41  E-value=0.00022  Score=71.72  Aligned_cols=91  Identities=20%  Similarity=0.210  Sum_probs=73.4

Q ss_pred             ccCCcccceeccCCceEEEEEEcCCCC-EEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~g~-~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      ..++.....||-|+||.|=........ .+|+|.+++...- ....+....|-.+|.+.+.|.||+++--|.++++.|+.
T Consensus       419 l~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmL  498 (732)
T KOG0614|consen  419 LSDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYML  498 (732)
T ss_pred             hhhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhh
Confidence            345666678999999999988875433 4889988765432 22345677899999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      ||-|-+|+|...|
T Consensus       499 mEaClGGElWTiL  511 (732)
T KOG0614|consen  499 MEACLGGELWTIL  511 (732)
T ss_pred             HHhhcCchhhhhh
Confidence            9999999997765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.28  E-value=0.0025  Score=69.15  Aligned_cols=133  Identities=23%  Similarity=0.259  Sum_probs=94.6

Q ss_pred             CCEeEEEcCCCCCcc-ccccccC-CCCCCcEEECcCCCCCCCCCCCC---CCCCcEEECcCCcCCCCcchhccCCCCCcE
Q 040888           69 SSVTEIKLSGLGLNG-QLGYQLT-NLKSVSYLDVSNNNLKDSIPYQL---PPNLKHLDLSENQFSGTVPYSISQMSELKY  143 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g-~~~~~~~-~l~~L~~L~Ls~N~l~g~~p~~~---~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~  143 (495)
                      .+++.|+++|...-. .-|..++ -||+|+.|.+++=.+...--..+   .|+|..||+|+.+++-.  ..+++|.+|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            467888887765432 2223333 47899999999877653211111   28999999999999844  67899999999


Q ss_pred             EEcccCcCCC-ccchhhhCCCCCcEEEccCCcCCCcC--c----ccccCCCCCCEEeccCCcccccc
Q 040888          144 LNLGSNQLNG-QLSDMFQKNEKLETLDLSKNQLTGEL--P----RSFASLSSLKKLYLQNNQFTGSI  203 (495)
Q Consensus       144 L~L~~N~l~g-~~p~~~~~l~~L~~L~ls~N~l~g~~--p----~~~~~l~~L~~L~l~~N~l~g~~  203 (495)
                      |.+.+=.|.. ..-..+.++++|+.||+|........  .    +.-..|++|+.||.++..++..+
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            9998877763 22345678999999999998765331  1    12235899999999999887654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.17  E-value=0.0019  Score=36.17  Aligned_cols=19  Identities=47%  Similarity=0.716  Sum_probs=9.3

Q ss_pred             CcEEECcCCcCCCCcchhcc
Q 040888          117 LKHLDLSENQFSGTVPYSIS  136 (495)
Q Consensus       117 L~~L~Ls~N~l~g~~p~~~~  136 (495)
                      |++|||++|+|+ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            445555555555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>cd05151 ChoK Choline Kinase (ChoK)

Probab=96.10  E-value=0.01  Score=52.48  Aligned_cols=75  Identities=17%  Similarity=0.158  Sum_probs=53.9

Q ss_pred             ceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcce-EEEEEEeCCEEEEEEEecCCCC
Q 040888          411 RLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE-LVGFCSEQGHNILIYDYYRNGS  489 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~-l~g~~~~~~~~~lv~ey~~~Gs  489 (495)
                      +.++.|.++.||++... +..+++|.......   ....+..|++.+..+.+.++++ ++.+.  ....++||||+++.+
T Consensus         4 ~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~---~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~~~~lv~e~i~G~~   77 (170)
T cd05151           4 SPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTE---LLINRENEAENSKLAAEAGIGPKLYYFD--PETGVLITEFIEGSE   77 (170)
T ss_pred             eecCCcccCceEEEEEC-CeEEEEEeCCCCcc---cccCHHHHHHHHHHHHHhCCCCceEEEe--CCCCeEEEEecCCCc
Confidence            56889999999999875 67899998764321   1234678888888887666554 44332  334579999999987


Q ss_pred             Hh
Q 040888          490 LH  491 (495)
Q Consensus       490 L~  491 (495)
                      +.
T Consensus        78 l~   79 (170)
T cd05151          78 LL   79 (170)
T ss_pred             cc
Confidence            75

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.07  E-value=0.0038  Score=58.08  Aligned_cols=60  Identities=25%  Similarity=0.401  Sum_probs=28.8

Q ss_pred             CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccC--cCCCccchhhhCCCCCcEEEccCCcCC
Q 040888          115 PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSN--QLNGQLSDMFQKNEKLETLDLSKNQLT  176 (495)
Q Consensus       115 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N--~l~g~~p~~~~~l~~L~~L~ls~N~l~  176 (495)
                      ..|+.|.+.+-.++..  ..+-.|++|+.|.++.|  .+++.++-....+++|++|+|++|++.
T Consensus        43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            3445555444444311  12334455555555555  344444444444455555555555554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.95  E-value=0.003  Score=35.36  Aligned_cols=19  Identities=63%  Similarity=0.898  Sum_probs=9.8

Q ss_pred             CcEEEccCCcCCCcCccccc
Q 040888          165 LETLDLSKNQLTGELPRSFA  184 (495)
Q Consensus       165 L~~L~ls~N~l~g~~p~~~~  184 (495)
                      |++|||++|+|+ .+|.+|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.89  E-value=0.026  Score=47.37  Aligned_cols=96  Identities=18%  Similarity=0.280  Sum_probs=33.9

Q ss_pred             CEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCC-C--CCCcEEECcCCcCCCCcchhccCCCCCcEEEc
Q 040888           70 SVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQL-P--PNLKHLDLSENQFSGTVPYSISQMSELKYLNL  146 (495)
Q Consensus        70 ~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~-~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  146 (495)
                      .++.+.+.. .+...-...|.++++|+.+++..+ +. .++... .  ++|+.+.+.+ .+...-...|..+++|+.+++
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~   88 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI   88 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence            455555553 344444445566656666666553 32 122111 1  2455555543 222122233444455555555


Q ss_pred             ccCcCCCccchhhhCCCCCcEEEcc
Q 040888          147 GSNQLNGQLSDMFQKNEKLETLDLS  171 (495)
Q Consensus       147 ~~N~l~g~~p~~~~~l~~L~~L~ls  171 (495)
                      ..| +...-...|.+. +|+.+.+.
T Consensus        89 ~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   89 PSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             TTT--BEEHTTTTTT--T--EEE-T
T ss_pred             Ccc-ccEEchhhhcCC-CceEEEEC
Confidence            443 332222334343 44444444

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=95.38  E-value=0.0052  Score=58.73  Aligned_cols=84  Identities=18%  Similarity=0.254  Sum_probs=60.1

Q ss_pred             ccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC------EEEEE
Q 040888          409 TGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG------HNILI  481 (495)
Q Consensus       409 ~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~------~~~lv  481 (495)
                      ....+|.|.- .|-.+.. -.++.||+|++..........++-.+|..++..+.|+|+++++.++...+      +.++|
T Consensus        21 nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y~v   99 (369)
T KOG0665|consen   21 NLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVYLV   99 (369)
T ss_pred             eecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHHHH
Confidence            3455666665 3433333 24789999998655322334567789999999999999999999997653      46899


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      ||||. ++|.+.+
T Consensus       100 ~e~m~-~nl~~vi  111 (369)
T KOG0665|consen  100 MELMD-ANLCQVI  111 (369)
T ss_pred             HHhhh-hHHHHHH
Confidence            99995 4777664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.36  E-value=0.017  Score=54.05  Aligned_cols=139  Identities=23%  Similarity=0.305  Sum_probs=96.9

Q ss_pred             cccCCCCCCcEEECcCCCCCCCCCCCCC------CCCcEEECcCCcCCC----Ccchh---------ccCCCCCcEEEcc
Q 040888           87 YQLTNLKSVSYLDVSNNNLKDSIPYQLP------PNLKHLDLSENQFSG----TVPYS---------ISQMSELKYLNLG  147 (495)
Q Consensus        87 ~~~~~l~~L~~L~Ls~N~l~g~~p~~~~------~~L~~L~Ls~N~l~g----~~p~~---------~~~l~~L~~L~L~  147 (495)
                      +.+-.|+.|+..|||.|.|.-..|..+.      +.|.+|.|++|.+.-    .|...         ..+-+.|+.....
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            4567889999999999998877775543      789999999998752    12211         2345789999999


Q ss_pred             cCcCCC-cc---chhhhCCCCCcEEEccCCcCCCc-----CcccccCCCCCCEEeccCCccccc--c---cccCCcc-Cc
Q 040888          148 SNQLNG-QL---SDMFQKNEKLETLDLSKNQLTGE-----LPRSFASLSSLKKLYLQNNQFTGS--I---NVLGKLP-LD  212 (495)
Q Consensus       148 ~N~l~g-~~---p~~~~~l~~L~~L~ls~N~l~g~-----~p~~~~~l~~L~~L~l~~N~l~g~--~---~~~~~~~-L~  212 (495)
                      .|+|.. .-   ...+..-..|+.+.+..|.|.-.     +-..+..+.+|+.|||..|-|+-.  .   ..+...+ |+
T Consensus       166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr  245 (388)
T COG5238         166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR  245 (388)
T ss_pred             cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence            999852 21   12344446899999999988622     111234578999999999999832  2   2344445 78


Q ss_pred             EEEeecCCCcccC
Q 040888          213 ELNVENNKFSGWV  225 (495)
Q Consensus       213 ~l~l~~N~l~g~~  225 (495)
                      .|.+.++.++..-
T Consensus       246 EL~lnDClls~~G  258 (388)
T COG5238         246 ELRLNDCLLSNEG  258 (388)
T ss_pred             hccccchhhcccc
Confidence            8999888887543

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=95.31  E-value=0.033  Score=53.76  Aligned_cols=83  Identities=20%  Similarity=0.338  Sum_probs=56.0

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      +|...++||+|+||..+.|+- -+++.||||.=.....    .-+...|-+.-.-+ .-+.|...+-+-.++..-.||+|
T Consensus        29 hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~----APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVid  104 (449)
T KOG1165|consen   29 HYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSE----APQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVID  104 (449)
T ss_pred             cceeccccccCcceeeecccccccCceEEEEeccccCC----cchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhh
Confidence            577789999999999999984 5789999997543322    12333444333333 45777776655555556679999


Q ss_pred             ecCCCCHhhh
Q 040888          484 YYRNGSLHEF  493 (495)
Q Consensus       484 y~~~GsL~~~  493 (495)
                      .. +-+|.+.
T Consensus       105 LL-GPSLEDL  113 (449)
T KOG1165|consen  105 LL-GPSLEDL  113 (449)
T ss_pred             hh-CcCHHHH
Confidence            87 5577654

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=95.27  E-value=0.046  Score=48.39  Aligned_cols=76  Identities=16%  Similarity=0.268  Sum_probs=55.7

Q ss_pred             cceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCCC
Q 040888          410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGS  489 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~Gs  489 (495)
                      ...|++|.+|.||.|.+.. ..+|+|+-+.+.    ....+..|++++..+.--++-+=+-.+   ++.++.|||+.+-.
T Consensus        27 ~~~L~KG~~s~Vyl~~~~~-~~~a~Kvrr~ds----~r~~l~kEakiLeil~g~~~~p~vy~y---g~~~i~me~i~G~~   98 (201)
T COG2112          27 EKELAKGTTSVVYLGEWRG-GEVALKVRRRDS----PRRNLEKEAKILEILAGEGVTPEVYFY---GEDFIRMEYIDGRP   98 (201)
T ss_pred             hhhhhcccccEEEEeeccC-ceEEEEEecCCc----chhhHHHHHHHHHHhhhcCCCceEEEe---chhhhhhhhhcCcc
Confidence            4779999999999999954 478998876543    256789999999988877766533222   22345599998867


Q ss_pred             Hhhh
Q 040888          490 LHEF  493 (495)
Q Consensus       490 L~~~  493 (495)
                      |.++
T Consensus        99 L~~~  102 (201)
T COG2112          99 LGKL  102 (201)
T ss_pred             hhhh
Confidence            7553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.10  E-value=0.062  Score=45.02  Aligned_cols=102  Identities=19%  Similarity=0.327  Sum_probs=42.4

Q ss_pred             ccCCCCCCcEEECcCCCCCCCCCCC-CC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCC
Q 040888           88 QLTNLKSVSYLDVSNNNLKDSIPYQ-LP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEK  164 (495)
Q Consensus        88 ~~~~l~~L~~L~Ls~N~l~g~~p~~-~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~  164 (495)
                      .|.++++|+.+.+.. .+. .++.. +.  ++|+.+++.++ +...-...|.++.+|+.+.+.+ .+...-...|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            466666777777763 333 22222 21  45666666554 4433334455555666666644 333233344555566


Q ss_pred             CcEEEccCCcCCCcCcccccCCCCCCEEecc
Q 040888          165 LETLDLSKNQLTGELPRSFASLSSLKKLYLQ  195 (495)
Q Consensus       165 L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~  195 (495)
                      |+.+++..| ++..-...|.++ +|+.+.+.
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            666666554 332333344444 55555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.48  E-value=0.0018  Score=60.56  Aligned_cols=61  Identities=31%  Similarity=0.366  Sum_probs=25.7

Q ss_pred             CCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccc-hhhhCCCCCcEEEccCCcCCCc
Q 040888          116 NLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLS-DMFQKNEKLETLDLSKNQLTGE  178 (495)
Q Consensus       116 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~  178 (495)
                      .|+.|.||-|.|+..-|  +..|++|++|+|..|.|...-. ..+.++++|+.|-|..|.-.|.
T Consensus        42 ~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~  103 (388)
T KOG2123|consen   42 LLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGE  103 (388)
T ss_pred             cceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccc
Confidence            34444444444432221  3444445555555554432211 1234444555555555544444

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=94.46  E-value=0.022  Score=58.02  Aligned_cols=85  Identities=18%  Similarity=0.286  Sum_probs=65.0

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCC------CCCcceEEEEEEeCCEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR------HTNIAELVGFCSEQGHN  478 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~------H~niv~l~g~~~~~~~~  478 (495)
                      .|...-..|+|-|+.|.+|... .|+.||||.|+....   ..+.=+.|+++|.++.      --+.++++-.|......
T Consensus       433 RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~---M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHL  509 (752)
T KOG0670|consen  433 RYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEV---MHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHL  509 (752)
T ss_pred             eeEEEeccccceeeeeeeccccCCCCeeEEEEeecchH---HhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhccee
Confidence            4555666899999999999874 488999999976432   2334467899999884      24678888888888999


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      +||||-+. -+|.+.|
T Consensus       510 ClVFE~Ls-lNLRevL  524 (752)
T KOG0670|consen  510 CLVFEPLS-LNLREVL  524 (752)
T ss_pred             EEEehhhh-chHHHHH
Confidence            99999764 4677665

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=93.58  E-value=0.19  Score=52.78  Aligned_cols=50  Identities=24%  Similarity=0.412  Sum_probs=37.6

Q ss_pred             CCCCcccHHHHHHhc------------cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCc
Q 040888          390 AQAAPFSMADLLTAT------------ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSS  440 (495)
Q Consensus       390 ~~~~~~~~~~~~~~t------------~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~  440 (495)
                      ++.++++++|+.+..            ..|+ .+.||.-+.|.||+|++++|+.||||+.+.+
T Consensus       135 D~~Pp~~~ee~~~i~e~ElG~~ie~if~~f~-~~piaaASlaQVhrA~L~~G~~VaVKVQ~P~  196 (538)
T KOG1235|consen  135 DQAPPFPWEEAFKIFEEELGAPIEDIFSEFD-EEPIAAASLAQVHRARLKNGEDVAVKVQHPG  196 (538)
T ss_pred             ccCCCCCHHHHHHHHHHHhCCCHHHHHHhcC-cchhhhcchhheEEEEecCCCEEEEEecCcC
Confidence            455666766664332            2343 4679999999999999999999999998764

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.43  E-value=0.006  Score=57.24  Aligned_cols=83  Identities=25%  Similarity=0.337  Sum_probs=50.8

Q ss_pred             CCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCc-ccccCCCCCCEEec
Q 040888          116 NLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELP-RSFASLSSLKKLYL  194 (495)
Q Consensus       116 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p-~~~~~l~~L~~L~l  194 (495)
                      +.+.|+..++.|+..  .....|+.|++|.||-|+|+..-|  +..+++|+.|.|..|.|...-- .-+.++++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            455666667666632  123456777777777777765433  5666777777777777653211 13456777777777


Q ss_pred             cCCccccc
Q 040888          195 QNNQFTGS  202 (495)
Q Consensus       195 ~~N~l~g~  202 (495)
                      ..|.-.|.
T Consensus        96 ~ENPCc~~  103 (388)
T KOG2123|consen   96 DENPCCGE  103 (388)
T ss_pred             ccCCcccc
Confidence            77765543

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=93.40  E-value=0.033  Score=46.37  Aligned_cols=31  Identities=32%  Similarity=0.409  Sum_probs=28.4

Q ss_pred             cceeccCCceEEEEEEcCCCCEEEEEEecCc
Q 040888          410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSS  440 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~  440 (495)
                      .+.|+.|+.|.||+|++++|+.||||+.+.+
T Consensus        16 ~~PlasASiaQVh~a~l~~g~~VaVKV~rP~   46 (119)
T PF03109_consen   16 PEPLASASIAQVHRARLKDGEEVAVKVQRPG   46 (119)
T ss_pred             cchhhheehhhheeeeecccchhhhhhcchH
Confidence            4779999999999999999999999998765

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.73  E-value=0.072  Score=27.64  Aligned_cols=9  Identities=56%  Similarity=0.870  Sum_probs=2.9

Q ss_pred             cEEECcCCc
Q 040888          118 KHLDLSENQ  126 (495)
Q Consensus       118 ~~L~Ls~N~  126 (495)
                      +.|+|++|+
T Consensus         4 ~~L~l~~n~   12 (17)
T PF13504_consen    4 RTLDLSNNR   12 (17)
T ss_dssp             SEEEETSS-
T ss_pred             CEEECCCCC
Confidence            333333333

...

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=92.58  E-value=0.2  Score=51.50  Aligned_cols=73  Identities=22%  Similarity=0.374  Sum_probs=53.1

Q ss_pred             ceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe----CCEEEEEEEecCC-CCHh
Q 040888          418 IGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE----QGHNILIYDYYRN-GSLH  491 (495)
Q Consensus       418 ~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~----~~~~~lv~ey~~~-GsL~  491 (495)
                      -.+.||+.. .||..++.|+++..+...  ...-..-++.++++.|.|+|++...+..    +...++||+|.|+ ++|.
T Consensus       289 ~~Ttyk~~s~~DG~~YvLkRlhg~r~~~--~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~  366 (655)
T KOG3741|consen  289 SITTYKATSNVDGNAYVLKRLHGDRDQS--TNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLY  366 (655)
T ss_pred             cceeEeeeeccCCceeeeeeeccccccC--cccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHH
Confidence            356799987 579999999995443211  2223445778999999999999998874    3467899999986 4554


Q ss_pred             h
Q 040888          492 E  492 (495)
Q Consensus       492 ~  492 (495)
                      +
T Consensus       367 d  367 (655)
T KOG3741|consen  367 D  367 (655)
T ss_pred             H
Confidence            4

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	495
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		8e-12
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		2e-11
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-11
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		4e-09
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		4e-09
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-08
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-08
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		1e-05
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		1e-05
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		2e-05
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		3e-05
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		3e-05
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		4e-05
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		5e-05
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		5e-05
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		6e-05
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		6e-05
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		6e-05
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		7e-05
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		8e-05
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		8e-05
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		8e-05
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		8e-05
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		8e-05
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		9e-05
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		9e-05
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		9e-05
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		9e-05
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		9e-05
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		9e-05
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		9e-05
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		9e-05
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		9e-05
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		9e-05
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		9e-05
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		9e-05
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		9e-05
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		9e-05
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		9e-05
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		9e-05
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		9e-05
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		1e-04
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		1e-04
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		1e-04
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		1e-04
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		1e-04
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		1e-04
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		1e-04
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		2e-04
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		2e-04
3ri1_A	313	Crystal Structure Of The Catalytic Domain Of Fgfr2		2e-04
1gjo_A	316	The Fgfr2 Tyrosine Kinase Domain Length = 316		2e-04
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-04
2pvy_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-04
2psq_A	370	Crystal Structure Of Unphosphorylated Unactivated W		2e-04
3b2t_A	311	Structure Of Phosphotransferase Length = 311		2e-04
2pwl_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-04
2pzr_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-04
2pzp_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-04
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		3e-04
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		3e-04
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		3e-04
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		3e-04
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		3e-04
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		3e-04
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		4e-04
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		4e-04
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		4e-04
2py3_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		4e-04
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		5e-04
2q0b_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		5e-04
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		5e-04
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		5e-04
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		5e-04
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		5e-04
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		5e-04
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		5e-04
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		5e-04
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		6e-04
3qup_A	323	Inhibitor Bound Structure Of The Kinase Domain Of T		8e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 375 HLLEVNQFNNVKSTNAQAAPFSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAV 434
           H  +V    + +    Q   FS+ +L  A+ NF+   +LG G  G+VY+ +  DG ++AV
Sbjct: 8   HFFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAV 67
Query: 435 KKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           K++     Q      F   V+ IS   H N+  L GFC      +L+Y Y  NGS+   L
Sbjct: 68  KRLKEERXQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCL 126
Query: 495 H 495
Sbjct: 127 R 127

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 390 AQAAPFSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSES 449
            Q   FS+ +L  A+ NF    +LG G  G+VY+ +  DG ++AVK++     Q      
Sbjct: 15  GQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQ-GGELQ 73
Query: 450 FSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           F   V+ IS   H N+  L GFC      +L+Y Y  NGS+   L 
Sbjct: 74  FQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLR 119

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 35/219 (15%)
Query: 25  TDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKXXXXXXXXX 84
            + QD  AL  +   L +P+ LS+W     D C   W G+ C   + T            
Sbjct: 3   CNPQDKQALLQIKKDLGNPTTLSSWLPTT-DCCNRTWLGVLCDTDTQTY----------- 50
Query: 85  XXXXXXXXKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSE-------NQFSGTVPYSISQ 137
                     V+ LD+S  NL    PY +P +L +L           N   G +P +I++
Sbjct: 51  ---------RVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99
Query: 138 MSELKYXXXXXXXXXXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNN 197
           +++L Y             D   + + L TLD S N L+G LP S +SL +L  +    N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 198 QFTGSI----NVLGKLPLDELNVENNKFSGWVPEELKDI 232
           + +G+I        KL    + +  N+ +G +P    ++
Sbjct: 160 RISGAIPDSYGSFSKL-FTSMTISRNRLTGKIPPTFANL 197

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 397 MADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQN 456
           + DL  AT NF    L+G G  G+VY+    DG  +A+K+      Q    E F   ++ 
Sbjct: 31  LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQ--GIEEFETEIET 88
Query: 457 ISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           +S  RH ++  L+GFC E+   ILIY Y  NG+L   L+
Sbjct: 89  LSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLY 127

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 397 MADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQN 456
           + DL  AT NF    L+G G  G+VY+    DG  +A+K+      Q    E F   ++ 
Sbjct: 31  LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQ--GIEEFETEIET 88
Query: 457 ISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           +S  RH ++  L+GFC E+   ILIY Y  NG+L   L+
Sbjct: 89  LSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLY 127

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 71/151 (47%), Gaps = 9/151 (5%)
Query: 93  KSVSYLDVSNNNLKDSIPYQLP---PNLKHLDLSENQFSGTVP-YSISQMSELKYXXXXX 148
           KS+ YL ++ N     IP  L      L  LDLS N F G VP +  S            
Sbjct: 266 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 325
Query: 149 XXXXXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLS-SLKKLYLQNNQFTGSI--NV 205
                   D   K   L+ LDLS N+ +GELP S  +LS SL  L L +N F+G I  N+
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
Query: 206 L--GKLPLDELNVENNKFSGWVPEELKDIAK 234
               K  L EL ++NN F+G +P  L + ++
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 416

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 71/151 (47%), Gaps = 9/151 (5%)
Query: 93  KSVSYLDVSNNNLKDSIPYQLP---PNLKHLDLSENQFSGTVP-YSISQMSELKYXXXXX 148
           KS+ YL ++ N     IP  L      L  LDLS N F G VP +  S            
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 149 XXXXXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLS-SLKKLYLQNNQFTGSI--NV 205
                   D   K   L+ LDLS N+ +GELP S  +LS SL  L L +N F+G I  N+
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 206 L--GKLPLDELNVENNKFSGWVPEELKDIAK 234
               K  L EL ++NN F+G +P  L + ++
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 395 FSMADLLTATANF------ATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSE 448
           FS  +L   T NF        G  +GEG  G VY+  Y +   +AVKK+ ++       E
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKG-YVNNTTVAVKKL-AAMVDITTEE 72
Query: 449 ---SFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
               F + ++ +++ +H N+ EL+GF S+     L+Y Y  NGSL + L
Sbjct: 73  LKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL 121

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 395 FSMADLLTATANF------ATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSE 448
           FS  +L   T NF        G  +GEG  G VY+  Y +   +AVKK+ ++       E
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKG-YVNNTTVAVKKL-AAMVDITTEE 72
Query: 449 ---SFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
               F + ++ +++ +H N+ EL+GF S+     L+Y Y  NGSL + L
Sbjct: 73  LKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL 121

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 395 FSMADLLTATANF------ATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSE 448
           FS  +L   T NF        G  +GEG  G VY+  Y +   +AVKK+ ++       E
Sbjct: 9   FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKG-YVNNTTVAVKKL-AAMVDITTEE 66
Query: 449 ---SFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
               F + ++ +++ +H N+ EL+GF S+     L+Y Y  NGSL + L
Sbjct: 67  LKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL 115

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
           +G G+ G V+RA++  G  +AVK +    F       F   V  + R+RH NI   +G  
Sbjct: 45  IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 473 SEQGHNILIYDYYRNGSLHEFLH 495
           ++  +  ++ +Y   GSL+  LH
Sbjct: 104 TQPPNLSIVTEYLSRGSLYRLLH 126

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
           +G G+ G V+RA++  G  +AVK +    F       F   V  + R+RH NI   +G  
Sbjct: 45  IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 473 SEQGHNILIYDYYRNGSLHEFLH 495
           ++  +  ++ +Y   GSL+  LH
Sbjct: 104 TQPPNLSIVTEYLSRGSLYRLLH 126

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 96  SYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXX 155
           S +D SN NL   +P  LPP  K L LS+N  S      IS +SEL+             
Sbjct: 34  SMVDYSNRNLTH-VPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLD 92
Query: 156 XDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
             +F  N+ LE LD+S N+L      S   ++SL+ L L  N F
Sbjct: 93  FHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDF 133

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G +++ L
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPRGEVYKEL 104

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G +++ L
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPRGEVYKEL 104

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 32  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           RH NI  L G+  +     LI +Y   G+++  L 
Sbjct: 92  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ 126

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+  + K +LA+K +  +  ++A  E      V+  S +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 66  RHPNILRLYGYFHDSTRVYLILEYAPLGTVYREL 99

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 32  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           RH NI  L G+  +     LI +Y   G+++  L 
Sbjct: 92  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ 126

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 406 NFATGRLLGEGTIGRVYRAKY------PDGKVLAVKKI-DSSHFQRANSESFSEIVQNIS 458
           N    R LGEG  G+V+ A+        D  ++AVK + D+S   R +    +E++ N+ 
Sbjct: 14  NIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNL- 72
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
             +H +I +  G C E    I++++Y ++G L++FL
Sbjct: 73  --QHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFL 106

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 23  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 82
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           RH NI  L G+  +     LI +Y   G+++  L 
Sbjct: 83  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ 117

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 102

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 102

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 5   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 64
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 65  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 98

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 67  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 100

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 68  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 101

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 68  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 101

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 104

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 102

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 412 LLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
           ++G G  G V +AK+   K +A+K+I+S   ++A    F   ++ +SR+ H NI +L G 
Sbjct: 16  VVGRGAFGVVCKAKW-RAKDVAIKQIESESERKA----FIVELRQLSRVNHPNIVKLYGA 70
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
           C       L+ +Y   GSL+  LH
Sbjct: 71  CLNP--VCLVMEYAEGGSLYNVLH 92

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 102

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 104

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 67  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 100

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 102

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 67  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 100

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 102

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 412 LLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
           ++G G  G V +AK+   K +A+K+I+S   ++A    F   ++ +SR+ H NI +L G 
Sbjct: 15  VVGRGAFGVVCKAKW-RAKDVAIKQIESESERKA----FIVELRQLSRVNHPNIVKLYGA 69
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
           C       L+ +Y   GSL+  LH
Sbjct: 70  CLNP--VCLVMEYAEGGSLYNVLH 91

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 10  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 69
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 70  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 103

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 104

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 395 FSMADLLTATANF------ATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDS--SHFQRAN 446
           FS  +L   T NF        G   GEG  G VY+  Y +   +AVKK+ +         
Sbjct: 6   FSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKG-YVNNTTVAVKKLAAMVDITTEEL 64
Query: 447 SESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            + F + ++  ++ +H N+ EL+GF S+     L+Y Y  NGSL + L
Sbjct: 65  KQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRL 112

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
           A  +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +
Sbjct: 3   ALEDFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 62
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           RH NI  L G+  +     LI +Y   G+++  L
Sbjct: 63  RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 96

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
              G+ LGEG  G+V  A        K  +   +AVK +     ++  S+  SE+     
Sbjct: 37  LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 96
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             +H NI  L+G C++ G   +I +Y   G+L E+L 
Sbjct: 97  IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLR 133

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
              G+ LGEG  G+V  A        K  +   +AVK +     ++  S+  SE+     
Sbjct: 37  LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 96
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             +H NI  L+G C++ G   +I +Y   G+L E+L 
Sbjct: 97  IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLR 133

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 44/91 (48%)
Query: 115 PNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETLDLSKNQ 174
           P+L  L+L  NQ +G  P +    S ++               MF    +L+TL+L  NQ
Sbjct: 54  PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113
Query: 175 LTGELPRSFASLSSLKKLYLQNNQFTGSINV 205
           ++  +P SF  L+SL  L L +N F  + ++
Sbjct: 114 ISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144

>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In Complex With Arq 069 Length = 313

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
              G+ LGEG  G+V  A        K  +   +AVK +     ++  S+  SE+     
Sbjct: 26  LTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 85
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             +H NI  L+G C++ G   +I +Y   G+L E+L 
Sbjct: 86  IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLR 122

>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain Length = 316

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
              G+ LGEG  G+V  A        K  +   +AVK +     ++  S+  SE+     
Sbjct: 29  LTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 88
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             +H NI  L+G C++ G   +I +Y   G+L E+L 
Sbjct: 89  IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLR 125

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
              G+ LGEG  G+V  A        K  +   +AVK +     ++  S+  SE+     
Sbjct: 37  LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 96
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             +H NI  L+G C++ G   +I +Y   G+L E+L 
Sbjct: 97  IGKHKNIITLLGACTQDGPLYVIVEYASKGNLREYLR 133

>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K659n Mutation Responsible For An Unclassified Craniosynostosis Syndrome. Length = 324

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
              G+ LGEG  G+V  A        K  +   +AVK +     ++  S+  SE+     
Sbjct: 37  LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 96
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             +H NI  L+G C++ G   +I +Y   G+L E+L 
Sbjct: 97  IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLR 133

>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild Type Fgf Receptor 2 (Fgfr2) Kinase Domain Length = 370

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
              G+ LGEG  G+V  A        K  +   +AVK +     ++  S+  SE+     
Sbjct: 83  LTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 142
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             +H NI  L+G C++ G   +I +Y   G+L E+L 
Sbjct: 143 IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLR 179

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
              G+ LGEG  G+V  A        K  +   +AVK +     ++  S+  SE+     
Sbjct: 24  LTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 83
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             +H NI  L+G C++ G   +I +Y   G+L E+L 
Sbjct: 84  IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLR 120

>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549h Mutation Responsible For Crouzon Syndrome. Length = 324

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
              G+ LGEG  G+V  A        K  +   +AVK +     ++  S+  SE+     
Sbjct: 37  LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 96
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             +H NI  L+G C++ G   +I +Y   G+L E+L 
Sbjct: 97  IGKHKNIIHLLGACTQDGPLYVIVEYASKGNLREYLR 133

>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K641r Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
              G+ LGEG  G+V  A        K  +   +AVK +     ++  S+  SE+     
Sbjct: 37  LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 96
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             +H NI  L+G C++ G   +I +Y   G+L E+L 
Sbjct: 97  IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLR 133

>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K526e Mutation Responsible For Crouzon Syndrome Length = 324

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
              G+ LGEG  G+V  A        K  +   +AVK +       A  E  S++V  + 
Sbjct: 37  LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD----ATEEDLSDLVSEME 92
Query: 459 RIR----HTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
            ++    H NI  L+G C++ G   +I +Y   G+L E+L 
Sbjct: 93  MMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLR 133

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 406 NFATGRLLGEGTIGRVYRAK--YPDGKV----LAVKKIDSSHFQRANSESFSEIVQNISR 459
           N   G+ LGEG  G+V +A   +  G+     +AVK +  +       +  SE    + +
Sbjct: 24  NLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEF-NVLKQ 82
Query: 460 IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           + H ++ +L G CS+ G  +LI +Y + GSL  FL 
Sbjct: 83  VNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLR 118

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 406 NFATGRLLGEGTIGRVYRAK--YPDGKV----LAVKKIDSSHFQRANSESFSEIVQNISR 459
           N   G+ LGEG  G+V +A   +  G+     +AVK +  +       +  SE    + +
Sbjct: 24  NLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEF-NVLKQ 82
Query: 460 IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           + H ++ +L G CS+ G  +LI +Y + GSL  FL 
Sbjct: 83  VNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLR 118

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 406 NFATGRLLGEGTIGRVYRAK--YPDGKV----LAVKKIDSSHFQRANSESFSEIVQNISR 459
           N   G+ LGEG  G+V +A   +  G+     +AVK +  +       +  SE    + +
Sbjct: 24  NLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEF-NVLKQ 82
Query: 460 IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           + H ++ +L G CS+ G  +LI +Y + GSL  FL 
Sbjct: 83  VNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLR 118

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 413 LGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
           LGEG  G+V+ A+        D  ++AVK +  +    +  + F    + ++ ++H +I 
Sbjct: 26  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA--SESARQDFQREAELLTMLQHQHIV 83
Query: 467 ELVGFCSEQGHNILIYDYYRNGSLHEFL 494
              G C+E    +++++Y R+G L+ FL
Sbjct: 84  RFFGVCTEGRPLLMVFEYMRHGDLNRFL 111

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 413 LGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
           LGEG  G+V+ A+        D  ++AVK +  +    +  + F    + ++ ++H +I 
Sbjct: 20  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA--SESARQDFQREAELLTMLQHQHIV 77
Query: 467 ELVGFCSEQGHNILIYDYYRNGSLHEFL 494
              G C+E    +++++Y R+G L+ FL
Sbjct: 78  RFFGVCTEGRPLLMVFEYMRHGDLNRFL 105

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 413 LGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
           LGEG  G+V+ A+        D  ++AVK +  +    +  + F    + ++ ++H +I 
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA--SESARQDFQREAELLTMLQHQHIV 106
Query: 467 ELVGFCSEQGHNILIYDYYRNGSLHEFL 494
              G C+E    +++++Y R+G L+ FL
Sbjct: 107 RFFGVCTEGRPLLMVFEYMRHGDLNRFL 134

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 406 NFATGRLLGEGTIGRVYRA------KYPDGKV--LAVKKIDSSHFQRANSESFSEIVQNI 457
               G+ LGEG  G+V  A      K    +V  +AVK + S   ++  S+  SE+    
Sbjct: 29  RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 88
Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
              +H NI  L+G C++ G   +I +Y   G+L E+L 
Sbjct: 89  MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 126

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 406 NFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRIRHT 463
           +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +RH 
Sbjct: 13  DFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRHP 72
Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           NI  L G+  +     LI +Y   G+++  L
Sbjct: 73  NILRLYGYFHDATRVYLILEYAPLGTVYREL 103

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 406 NFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRIRHT 463
           +F  GR LG+G  G VY A+    K +LA+K +  +  ++A  E      V+  S +RH 
Sbjct: 13  DFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRHP 72
Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           NI  L G+  +     LI +Y   G+++  L
Sbjct: 73  NILRLYGYFHDATRVYLILEYAPLGTVYREL 103

>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565g Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
              G+ LGEG  G+V  A        K  +   +AVK +     ++  S+  SE+     
Sbjct: 37  LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 96
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             +H NI  L+G C++ G   +I  Y   G+L E+L 
Sbjct: 97  IGKHKNIINLLGACTQDGPLYVIVGYASKGNLREYLR 133

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 406 NFATGRLLGEGTIGRVYRA------KYPDGKV--LAVKKIDSSHFQRANSESFSEIVQNI 457
               G+ LGEG  G+V  A      K    +V  +AVK + S   ++  S+  SE+    
Sbjct: 29  RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 88
Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
              +H NI  L+G C++ G   +I +Y   G+L E+L 
Sbjct: 89  MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 126

>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565a Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
              G+ LGEG  G+V  A        K  +   +AVK +     ++  S+  SE+     
Sbjct: 37  LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 96
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             +H NI  L+G C++ G   +I  Y   G+L E+L 
Sbjct: 97  IGKHKNIINLLGACTQDGPLYVIVAYASKGNLREYLR 133

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 406 NFATGRLLGEGTIGRVYRA------KYPDGKV--LAVKKIDSSHFQRANSESFSEIVQNI 457
               G+ LGEG  G+V  A      K    +V  +AVK + S   ++  S+  SE+    
Sbjct: 29  RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 88
Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
              +H NI  L+G C++ G   +I +Y   G+L E+L 
Sbjct: 89  MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 126

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA------KYPDGKV--LAVKKIDSSHFQRANSESFSEIVQNIS 458
              G+ LGEG  G+V  A      K    +V  +AVK + S   ++  S+  SE+     
Sbjct: 71  LVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKM 130
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             +H NI  L+G C++ G   +I +Y   G+L E+L 
Sbjct: 131 IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 167

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 406 NFATGRLLGEGTIGRVYRA------KYPDGKV--LAVKKIDSSHFQRANSESFSEIVQNI 457
               G+ LGEG  G+V  A      K    +V  +AVK + S   ++  S+  SE+    
Sbjct: 14  RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 73
Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
              +H NI  L+G C++ G   +I +Y   G+L E+L 
Sbjct: 74  MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 111

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 406 NFATGRLLGEGTIGRVYRA------KYPDGKV--LAVKKIDSSHFQRANSESFSEIVQNI 457
               G+ LGEG  G+V  A      K    +V  +AVK + S   ++  S+  SE+    
Sbjct: 29  RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 88
Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
              +H NI  L+G C++ G   +I +Y   G+L E+L 
Sbjct: 89  MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 126

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 406 NFATGRLLGEGTIGRVYRA------KYPDGKV--LAVKKIDSSHFQRANSESFSEIVQNI 457
               G+ LGEG  G+V  A      K    +V  +AVK + S   ++  S+  SE+    
Sbjct: 18  RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 77
Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
              +H NI  L+G C++ G   +I +Y   G+L E+L 
Sbjct: 78  MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 115

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 406 NFATGRLLGEGTIGRVYRAKY------PDGKVLAVKKI-DSSHFQRANSESFSEIVQNIS 458
           +    R LGEG  G+V+ A+        D  ++AVK + D +   R + +  +E++ N+ 
Sbjct: 16  DIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNL- 74
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
             +H +I +  G C +    I++++Y ++G L++FL
Sbjct: 75  --QHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFL 108

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 406 NFATGRLLGEGTIGRVYRA------KYPDGKV--LAVKKIDSSHFQRANSESFSEIVQNI 457
               G+ LGEG  G+V  A      K    +V  +AVK + S   ++  S+  SE+    
Sbjct: 22  RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 81
Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
              +H NI  L+G C++ G   +I +Y   G+L E+L 
Sbjct: 82  MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 119

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 406 NFATGRLLGEGTIGRVYRA------KYPDGKV--LAVKKIDSSHFQRANSESFSEIVQNI 457
               G+ LGEG  G+V  A      K    +V  +AVK + S   ++  S+  SE+    
Sbjct: 21  RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 80
Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
              +H NI  L+G C++ G   +I +Y   G+L E+L 
Sbjct: 81  MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 118

>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The Murine Receptor Tyrosine Kinase Tyro3 (Sky) Length = 323

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 397 MADLLTATANFATGRLLGEGTIGRVYRA--KYPDGKV--LAVKKIDSSHFQRANSESFSE 452
           + D+L     F  GR+LG+G  G V  A  K  DG    +AVK + +     ++ E F  
Sbjct: 15  LEDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLR 74
Query: 453 IVQNISRIRHTNIAELVGFCSEQGHN------ILIYDYYRNGSLHEFL 494
               +    H ++A+LVG              ++I  + ++G LH FL
Sbjct: 75  EAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFL 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	495
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-45
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	4e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-26
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	2e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-23
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-23
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	1e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-19
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-19
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-18
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-16
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-15
3soc_A	322	Activin receptor type-2A; structural genomics cons	1e-16
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-16
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	4e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-15
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-15
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	5e-15
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-14
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-10
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	1e-14
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	3e-14
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-14
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-14
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	1e-13
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	2e-13
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-13
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-12
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-13
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-08
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	4e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-12
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-12
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-10
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-12
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	8e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-12
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-12
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-07
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	4e-12
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	4e-12
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	5e-12
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-12
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-08
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-11
3q4u_A	301	Activin receptor type-1; structural genomics conso	2e-11
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	7e-10
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	9e-10
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	2e-09
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	3e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-08
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	5e-09
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	4e-06
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	5e-09
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	9e-09
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	1e-08
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	1e-08
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	1e-08
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	1e-08
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	1e-08
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	1e-08
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	2e-08
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	2e-08
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	2e-08
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	2e-08
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	2e-08
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	3e-08
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	3e-08
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	4e-08
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	4e-08
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	4e-08
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	4e-08
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	5e-08
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	5e-08
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	5e-08
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	5e-08
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	6e-08
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	6e-08
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	6e-08
4aoj_A	329	High affinity nerve growth factor receptor; transf	7e-08
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	7e-08
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	7e-08
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	9e-08
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	1e-07
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	1e-07
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	1e-07
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-07
3pls_A	298	Macrophage-stimulating protein receptor; protein k	1e-07
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-07
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	2e-07
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	2e-07
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	3e-07
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	3e-07
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	3e-07
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	3e-07
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	4e-07
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	4e-07
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	4e-07
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	5e-07
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	5e-07
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	5e-05
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	6e-07
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	6e-07
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	7e-07
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	8e-07
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	8e-07
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	8e-07
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	1e-06
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	1e-06
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	1e-06
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	1e-06
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-06
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-05
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	2e-06
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	2e-06
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	3e-06
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	3e-06
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	4e-06
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	5e-06
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	5e-06
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	6e-06
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	7e-06
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	9e-06
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	1e-05
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	1e-05
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-05
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	1e-05
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	1e-05
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	1e-05
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	1e-05
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	1e-05
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	2e-05
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	2e-05
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-05
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	2e-05
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	2e-05
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	2e-05
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	3e-05
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	3e-05
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	3e-05
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	4e-05
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	4e-05
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	6e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	7e-05
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	6e-04
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	8e-05
3bhy_A	283	Death-associated protein kinase 3; death associate	9e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-04
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	1e-04
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-04
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	2e-04
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	2e-04
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	3e-04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	3e-04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	4e-04
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	3e-04
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	4e-04
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	4e-04
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	4e-04
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	5e-04
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	5e-04
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	5e-04
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	6e-04
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	6e-04
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	6e-04
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	6e-04
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	6e-04
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	7e-04
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	8e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	8e-04
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  169 bits (430), Expect = 1e-45
 Identities = 59/200 (29%), Positives = 92/200 (46%), Gaps = 15/200 (7%)

Query: 39  SLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSGLGLNGQLGY---QLTNLKSV 95
            L   + L +W     +PC   + G+TC    VT I LS   LN         L +L  +
Sbjct: 23  VLPDKNLLPDWS-SNKNPC--TFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79

Query: 96  SYLDVSNNNLKDSIP-YQLPPNLKHLDLSENQFSGTVP--YSISQMSELKYLNLGSNQLN 152
             L +SN+++  S+  ++   +L  LDLS N  SG V    S+   S LK+LN+ SN L+
Sbjct: 80  ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139

Query: 153 GQLSDMFQKN-EKLETLDLSKNQLTGELPRSFA---SLSSLKKLYLQNNQFTGSINVLGK 208
                        LE LDLS N ++G     +        LK L +  N+ +G ++ + +
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSR 198

Query: 209 LP-LDELNVENNKFSGWVPE 227
              L+ L+V +N FS  +P 
Sbjct: 199 CVNLEFLDVSSNNFSTGIPF 218

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  144 bits (366), Expect = 3e-37
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 9/167 (5%)

Query: 69  SSVTEIKLSGLGLNGQL---GYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSEN 125
           +S+  + LS   ++G              + +L +S N +   +      NL+ LD+S N
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSN 210

Query: 126 QFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFAS 185
            FS  +P  +   S L++L++  N+L+G  S       +L+ L++S NQ  G +P     
Sbjct: 211 NFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--P 267

Query: 186 LSSLKKLYLQNNQFTGSI--NVLGKLP-LDELNVENNKFSGWVPEEL 229
           L SL+ L L  N+FTG I   + G    L  L++  N F G VP   
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  142 bits (361), Expect = 1e-36
 Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 8/170 (4%)

Query: 69  SSVTEIKLSGLGLNGQL-GYQLTNLKSVSYLDVSNNNLKDSIP---YQLPPNLKHLDLSE 124
           S +  + LS    +G+L    L  ++ +  LD+S N     +P     L  +L  LDLS 
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377

Query: 125 NQFSGTVPYSI--SQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRS 182
           N FSG +  ++  +  + L+ L L +N   G++        +L +L LS N L+G +P S
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437

Query: 183 FASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVPEELK 230
             SLS L+ L L  N   G I   L  +  L+ L ++ N  +G +P  L 
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  142 bits (360), Expect = 2e-36
 Identities = 58/167 (34%), Positives = 85/167 (50%), Gaps = 6/167 (3%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTN--LKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSE 124
           +S+  + LS    +G +   L      ++  L + NN     IP  L     L  L LS 
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427

Query: 125 NQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFA 184
           N  SGT+P S+  +S+L+ L L  N L G++       + LETL L  N LTGE+P   +
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487

Query: 185 SLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVPEEL 229
           + ++L  + L NN+ TG I   +G+L  L  L + NN FSG +P EL
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  138 bits (351), Expect = 3e-35
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 5/166 (3%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFS 128
           S++  + +SG  L+G     ++    +  L++S+N     IP     +L++L L+EN+F+
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFT 282

Query: 129 GTVPYSIS-QMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPR-SFASL 186
           G +P  +S     L  L+L  N   G +   F     LE+L LS N  +GELP  +   +
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342

Query: 187 SSLKKLYLQNNQFTGSI-NVLGKLP--LDELNVENNKFSGWVPEEL 229
             LK L L  N+F+G +   L  L   L  L++ +N FSG +   L
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  135 bits (342), Expect = 5e-34
 Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 6/181 (3%)

Query: 66  CSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLS 123
            + S +  + LS   L+G +   L +L  +  L +  N L+  IP +L     L+ L L 
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 124 ENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSF 183
            N  +G +P  +S  + L +++L +N+L G++     + E L  L LS N  +G +P   
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

Query: 184 ASLSSLKKLYLQNNQFTGSI-NVLGKLPLDELNVENNKFSGWVPEELKDIAKTGGNSWSS 242
               SL  L L  N F G+I   + K       +  N  +G     +K+         + 
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGK---IAANFIAGKRYVYIKNDGMKKECHGAG 591

Query: 243 S 243
           +
Sbjct: 592 N 592

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  122 bits (308), Expect = 1e-29
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 2/140 (1%)

Query: 66  CSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLS 123
                      + L   G    QL  L + +  ++++               ++  LD+S
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640

Query: 124 ENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSF 183
            N  SG +P  I  M  L  LNLG N ++G + D       L  LDLS N+L G +P++ 
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700

Query: 184 ASLSSLKKLYLQNNQFTGSI 203
           ++L+ L ++ L NN  +G I
Sbjct: 701 SALTMLTEIDLSNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  116 bits (292), Expect = 1e-27
 Identities = 45/193 (23%), Positives = 85/193 (44%), Gaps = 26/193 (13%)

Query: 66  CSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIP--------------- 110
               ++  +KLS    +G +  +L + +S+ +LD++ N    +IP               
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570

Query: 111 -YQLPPNLK--------HLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQK 161
             +    +K        H   +  +F G     ++++S     N+ S    G  S  F  
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630

Query: 162 NEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENN 219
           N  +  LD+S N L+G +P+   S+  L  L L +N  +GSI + +G L  L+ L++ +N
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690

Query: 220 KFSGWVPEELKDI 232
           K  G +P+ +  +
Sbjct: 691 KLDGRIPQAMSAL 703

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  115 bits (291), Expect = 2e-27
 Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 2/166 (1%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQ 126
           S + ++KL    L G++  +L  +K++  L +  N+L   IP  L    NL  + LS N+
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501

Query: 127 FSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASL 186
            +G +P  I ++  L  L L +N  +G +         L  LDL+ N   G +P +    
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561

Query: 187 SSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDI 232
           S          +    I   G            +F G   E+L  +
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 165 LETLDLSKNQLT---GELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNK 220
           + ++DLS   L      +  S  SL+ L+ L+L N+   GS++       L  L++  N 
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111

Query: 221 FSGWVPEE 228
            SG V   
Sbjct: 112 LSGPVTTL 119

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 76  LSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVP 132
           L    ++G +  ++ +L+ ++ LD+S+N L   IP  +     L  +DLS N  SG +P
Sbjct: 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  148 bits (376), Expect = 6e-41
 Identities = 62/264 (23%), Positives = 104/264 (39%), Gaps = 61/264 (23%)

Query: 25  TDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSG----SSVTEI------ 74
            + QD  AL  +   L +P+ LS+W     D C   W G+ C        V  +      
Sbjct: 3   CNPQDKQALLQIKKDLGNPTTLSSWL-PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 75  -------------------------------------KLSGL--------GLNGQLGYQL 89
                                                KL+ L         ++G +   L
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121

Query: 90  TNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSEL-KYLNL 146
           + +K++  LD S N L  ++P  +   PNL  +    N+ SG +P S    S+L   + +
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 147 GSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVL 206
             N+L G++   F  N  L  +DLS+N L G+    F S  + +K++L  N     +  +
Sbjct: 182 SRNRLTGKIPPTFA-NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240

Query: 207 GKLP-LDELNVENNKFSGWVPEEL 229
           G    L+ L++ NN+  G +P+ L
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGL 264

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  134 bits (339), Expect = 1e-35
 Identities = 39/165 (23%), Positives = 78/165 (47%), Gaps = 7/165 (4%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQ---LPPNLKHLDLSEN 125
            ++  +  S   L+G L   +++L ++  +    N +  +IP            + +S N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184

Query: 126 QFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFAS 185
           + +G +P + + ++ L +++L  N L G  S +F  ++  + + L+KN L  +L      
Sbjct: 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGL 242

Query: 186 LSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVPEE 228
             +L  L L+NN+  G++   L +L  L  LNV  N   G +P+ 
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  124 bits (314), Expect = 3e-32
 Identities = 39/155 (25%), Positives = 58/155 (37%), Gaps = 4/155 (2%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKS-VSYLDVSNNNLKDSIPYQL-PPNLKHLDLSENQ 126
            ++  I   G  ++G +     +     + + +S N L   IP      NL  +DLS N 
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM 208

Query: 127 FSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASL 186
             G            + ++L  N L   L      ++ L  LDL  N++ G LP+    L
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQL 267

Query: 187 SSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNK 220
             L  L +  N   G I   G L   D     NNK
Sbjct: 268 KFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  122 bits (307), Expect = 8e-30
 Identities = 41/187 (21%), Positives = 65/187 (34%), Gaps = 20/187 (10%)

Query: 55  DPCGEHWKGIT--CSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQ 112
           +PC E    IT  C   +  +I    L              S   LD+S N L+    Y 
Sbjct: 1   EPCVEVVPNITYQCMELNFYKI-PDNL------------PFSTKNLDLSFNPLRHLGSYS 47

Query: 113 LP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDL 170
               P L+ LDLS  +       +   +S L  L L  N +       F     L+ L  
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 171 SKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI--NVLGKLP-LDELNVENNKFSGWVPE 227
            +  L          L +LK+L + +N             L  L+ L++ +NK       
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 228 ELKDIAK 234
           +L+ + +
Sbjct: 168 DLRVLHQ 174

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  114 bits (287), Expect = 3e-27
 Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 4/146 (2%)

Query: 63  GITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP---PNLKH 119
            +  S  ++  + +S              L S+  L ++ N+ +++    +     NL  
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 120 LDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGEL 179
           LDLS+ Q     P + + +S L+ LN+  N      +  ++    L+ LD S N +    
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534

Query: 180 PRSFASL-SSLKKLYLQNNQFTGSIN 204
            +      SSL  L L  N F  +  
Sbjct: 535 KQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  112 bits (281), Expect = 2e-26
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 8/169 (4%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQL--PPNLKHLDLSENQ 126
             +  + LS   +         +L  +S L ++ N ++           +L+ L   E  
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 127 FSGTVPYSISQMSELKYLNLGSNQLNG-QLSDMFQKNEKLETLDLSKNQLTGELPRSFAS 185
            +    + I  +  LK LN+  N +   +L + F     LE LDLS N++          
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 186 LSSLK----KLYLQNNQFTGSI-NVLGKLPLDELNVENNKFSGWVPEEL 229
           L  +      L L  N           ++ L +L + NN  S  V +  
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  111 bits (279), Expect = 3e-26
 Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 9/164 (5%)

Query: 75  KLSGLGLNGQLGYQLTNLKSVSYLDVSNNNL--KDSIPYQL--PPNLKHLDLSENQFSGT 130
           +L+     G   +   +L S+ +LD+S N L  K           +LK+LDLS N    T
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-T 387

Query: 131 VPYSISQMSELKYLNLGSNQLNGQLS-DMFQKNEKLETLDLSKNQLTGELPRSFASLSSL 189
           +  +   + +L++L+   + L       +F     L  LD+S           F  LSSL
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 190 KKLYLQNNQFTGSI--NVLGKLP-LDELNVENNKFSGWVPEELK 230
           + L +  N F  +   ++  +L  L  L++   +     P    
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  110 bits (276), Expect = 8e-26
 Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 9/166 (5%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQ-- 126
                ++L           +L +LK    L  ++N   ++      P+L+ LDLS N   
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKR---LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360

Query: 127 FSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRS-FAS 185
           F G    S    + LKYL+L  N +   +S  F   E+LE LD   + L      S F S
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 186 LSSLKKLYLQNNQFTGSIN-VLGKLP-LDELNVENNKFSGWVPEEL 229
           L +L  L + +     + N +   L  L+ L +  N F      ++
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  100 bits (252), Expect = 7e-23
 Identities = 34/185 (18%), Positives = 65/185 (35%), Gaps = 26/185 (14%)

Query: 70  SVTEIKLSGLGL-NGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFS 128
           ++ E +L+ L      +      L +VS   + +  ++    +      +HL+L   +F 
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 129 -------------------GTVPYSISQMSELKYLNLGSNQLN--GQLSDMFQKNEKLET 167
                              G   +S   +  L++L+L  N L+  G  S        L+ 
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 168 LDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI--NVLGKLP-LDELNVENNKFSGW 224
           LDLS N +   +  +F  L  L+ L  Q++        +V   L  L  L++ +      
Sbjct: 378 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 225 VPEEL 229
                
Sbjct: 437 FNGIF 441

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 92.8 bits (231), Expect = 3e-20
 Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 14/167 (8%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKD-SIPYQLP--PNLKHLDLSEN 125
           SS+ ++      L     + + +LK++  L+V++N ++   +P       NL+HLDLS N
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 126 QFSGTVPYSISQMSELKY----LNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPR 181
           +        +  + ++      L+L  N +N      F K  +L  L L  N  +  + +
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMK 218

Query: 182 -SFASLSSLKKLYLQNNQFTGSINVLGKLP-----LDELNVENNKFS 222
                L+ L+   L   +F    N+          L  L +E  + +
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  117 bits (296), Expect = 3e-28
 Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 3/129 (2%)

Query: 97  YLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLS 156
             D S+  L   +P  LP N+  L+L+ NQ       + ++ S+L  L++G N ++    
Sbjct: 8   VADCSHLKL-TQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66

Query: 157 DMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDEL 214
           ++ QK   L+ L+L  N+L+    ++FA  ++L +L+L +N       N   K   L  L
Sbjct: 67  ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126

Query: 215 NVENNKFSG 223
           ++ +N  S 
Sbjct: 127 DLSHNGLSS 135

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  117 bits (294), Expect = 5e-28
 Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 4/142 (2%)

Query: 92  LKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSN 149
             +++ L++++N L+            L  LD+  N  S   P    ++  LK LNL  N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 150 QLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGK 208
           +L+      F     L  L L  N +       F    +L  L L +N  + +      +
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 209 LP-LDELNVENNKFSGWVPEEL 229
           L  L EL + NNK      EEL
Sbjct: 144 LENLQELLLSNNKIQALKSEEL 165

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  116 bits (293), Expect = 6e-28
 Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 6/172 (3%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQ 126
           +++T + L+   L        T    ++ LDV  N +    P      P LK L+L  N+
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 127 FSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASL 186
            S     + +  + L  L+L SN +    ++ F K + L TLDLS N L+     +   L
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 187 SSLKKLYLQNNQFTG----SINVLGKLPLDELNVENNKFSGWVPEELKDIAK 234
            +L++L L NN+        +++     L +L + +N+   + P     I +
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  111 bits (280), Expect = 3e-26
 Identities = 38/174 (21%), Positives = 74/174 (42%), Gaps = 11/174 (6%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLK-----DSIPYQLP-PNLKHLDL 122
             +  + +    + G      T L ++ YL +SN+        +     L    L  L+L
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388

Query: 123 SENQFSGTVPYSISQMSELKYLNLGSNQLNGQLS-DMFQKNEKLETLDLSKNQLTGELPR 181
           ++N+ S     + S +  L+ L+LG N++  +L+   ++  E +  + LS N+       
Sbjct: 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448

Query: 182 SFASLSSLKKLYLQNNQFTG---SINVLGKLP-LDELNVENNKFSGWVPEELKD 231
           SFA + SL++L L+         S +    L  L  L++ NN  +    + L+ 
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  110 bits (278), Expect = 6e-26
 Identities = 34/147 (23%), Positives = 51/147 (34%), Gaps = 6/147 (4%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQL--PPNLKHLDLSENQFSGTVPYSISQMSELKYLNL 146
              L  +  L++ +N L            NL  L L  N           +   L  L+L
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128

Query: 147 GSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASL--SSLKKLYLQNNQFTGSI- 203
             N L+        + E L+ L LS N++             SSLKKL L +NQ      
Sbjct: 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188

Query: 204 NVLGKLP-LDELNVENNKFSGWVPEEL 229
                +  L  L + N +    + E+L
Sbjct: 189 GCFHAIGRLFGLFLNNVQLGPSLTEKL 215

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  108 bits (272), Expect = 3e-25
 Identities = 47/162 (29%), Positives = 66/162 (40%), Gaps = 16/162 (9%)

Query: 75  KLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFS---- 128
            L  +  +      L NL     LD+SNNN+ +     L     L+ LDL  N  +    
Sbjct: 465 ALKNVDSSPSPFQPLRNLT---ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK 521

Query: 129 ----GTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFA 184
               G   Y +  +S L  LNL SN  +    ++F+   +L+ +DL  N L       F 
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581

Query: 185 SLSSLKKLYLQNNQFTGSI-NVLGKLP--LDELNVENNKFSG 223
           +  SLK L LQ N  T     V G     L EL++  N F  
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  108 bits (271), Expect = 4e-25
 Identities = 47/201 (23%), Positives = 71/201 (35%), Gaps = 17/201 (8%)

Query: 46  LSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNL 105
           LSN          E +     + S +  + L+   ++       + L  +  LD+  N +
Sbjct: 360 LSNSFTSLRTLTNETFVS--LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417

Query: 106 KDSIPYQLP---PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNG--QLSDMFQ 160
              +  Q      N+  + LS N++      S + +  L+ L L    L         FQ
Sbjct: 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477

Query: 161 KNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT---------GSINVLGKLP- 210
               L  LDLS N +          L  L+ L LQ+N            G I  L  L  
Sbjct: 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537

Query: 211 LDELNVENNKFSGWVPEELKD 231
           L  LN+E+N F     E  KD
Sbjct: 538 LHILNLESNGFDEIPVEVFKD 558

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  105 bits (263), Expect = 4e-24
 Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 11/152 (7%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQL----PPNLKHLDLSENQFSGTVPYSISQMSELKYL 144
              L+++  L +SNN ++     +L      +LK L+LS NQ     P     +  L  L
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200

Query: 145 NLGSNQLNGQLSDMFQ---KNEKLETLDLSKNQLTGELPRSFASL--SSLKKLYLQNNQF 199
            L + QL   L++       N  +  L LS +QL+     +F  L  ++L  L L  N  
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 200 TGSI-NVLGKLP-LDELNVENNKFSGWVPEEL 229
                +    LP L+   +E N         L
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  103 bits (258), Expect = 2e-23
 Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 18/176 (10%)

Query: 66  CSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP-----PNLKHL 120
            + SS+ +++LS   +          +  +  L ++N  L  S+  +L       ++++L
Sbjct: 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

Query: 121 DLSENQFSGTVPYSISQM--SELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGE 178
            LS +Q S T   +   +  + L  L+L  N LN   +D F    +LE   L  N +   
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287

Query: 179 LPRSFASLSSLKKLYLQNNQFTGSI----------NVLGKLP-LDELNVENNKFSG 223
              S   L +++ L L+ +    SI               L  L+ LN+E+N   G
Sbjct: 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  101 bits (254), Expect = 6e-23
 Identities = 40/174 (22%), Positives = 67/174 (38%), Gaps = 11/174 (6%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQ 126
           +++TE+ L    +           K++  LD+S+N L  +         NL+ L LS N+
Sbjct: 97  TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 127 FSGTVPYSIS--QMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFA 184
                   +     S LK L L SNQ+       F    +L  L L+  QL   L     
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 185 ---SLSSLKKLYLQNNQFTGSINV----LGKLPLDELNVENNKFSGWVPEELKD 231
              + +S++ L L N+Q + + N     L    L  L++  N  +    +    
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 99.3 bits (248), Expect = 3e-22
 Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 13/148 (8%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLP----------PNLKHLDLSENQFSGTVPYSISQM 138
           L  L+ +  LD+ +NNL     +  P           +L  L+L  N F          +
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559

Query: 139 SELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFA-SLSSLKKLYLQNN 197
            ELK ++LG N LN   + +F     L++L+L KN +T    + F  +  +L +L ++ N
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619

Query: 198 QFTGSINVLGKLP--LDELNVENNKFSG 223
            F  +   +      ++E +    + S 
Sbjct: 620 PFDCTCESIAWFVNWINETHTNIPELSS 647

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.8 bits (244), Expect = 1e-21
 Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 17/178 (9%)

Query: 66  CSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPY-----------QLP 114
              +++T + LS   LN         L  + Y  +  NN++    +            L 
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 115 PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKN- 173
            +     +S         +S   +  L++LN+  N + G  S+MF     L+ L LS + 
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 174 -QLTGELPRSFASL--SSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVP 226
             L      +F SL  S L  L L  N+ +    +    L  L+ L++  N+    + 
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 8e-09
 Identities = 20/126 (15%), Positives = 38/126 (30%), Gaps = 7/126 (5%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQ 126
           S +  + L   G +        +L  +  +D+  NNL            +LK L+L +N 
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 127 FSGTVPYSIS-QMSELKYLNLGSNQLNGQLSDM--FQK--NEKLETLDLSKNQLTGELPR 181
            +             L  L++  N  +     +  F    NE    +    +      P 
Sbjct: 596 ITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPP 655

Query: 182 SFASLS 187
            +    
Sbjct: 656 HYHGFP 661

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 14/113 (12%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPP---NLKHLDLSEN 125
             +  I L    LN        N  S+  L++  N +         P   NL  LD+  N
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619

Query: 126 QFSGTVPYSISQMSEL-KYLNLGSNQLNGQLSDMF------QKNEKLETLDLS 171
            F  T       ++    ++N     +    S              +   D S
Sbjct: 620 PFDCT----CESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTS 668

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 165 LETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSIN-VLGKLP-LDELNVENNKFS 222
            E  D S  +LT ++P      +++  L L +NQ          +   L  L+V  N  S
Sbjct: 6   HEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 223 GWVPEELKD 231
              PE  + 
Sbjct: 63  KLEPELCQK 71

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  113 bits (284), Expect = 4e-28
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 1/101 (0%)

Query: 395 FSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIV 454
           FS+ +L  A+ NF+   +LG G  G+VY+ +  DG ++AVK++     Q    +  +E V
Sbjct: 20  FSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTE-V 78

Query: 455 QNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           + IS   H N+  L GFC      +L+Y Y  NGS+   L 
Sbjct: 79  EMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLR 119

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  108 bits (271), Expect = 2e-26
 Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 395 FSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIV 454
             + DL  AT NF    L+G G  G+VY+    DG  +A+K+      Q    E  +EI 
Sbjct: 29  VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQ-GIEEFETEI- 86

Query: 455 QNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           + +S  RH ++  L+GFC E+   ILIY Y  NG+L   L+
Sbjct: 87  ETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLY 127

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  111 bits (279), Expect = 3e-26
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 3/128 (2%)

Query: 98  LDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSD 157
            +  N  L + IP  LP + + L+ S N        + S++  L +L+L   Q+     D
Sbjct: 17  YNCENLGL-NEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED 75

Query: 158 MFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELN 215
            FQ   +L+TL L+ N L      + +   +LK L+      +      L     L+ L 
Sbjct: 76  TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135

Query: 216 VENNKFSG 223
           + +N  S 
Sbjct: 136 LGSNHISS 143

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  107 bits (269), Expect = 6e-25
 Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 7/169 (4%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPY---QLPPNLKHLDLSEN 125
           S +  + LS                 +  LD++   LK        Q    LK L+LS +
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

Query: 126 QFSGTVPYSISQMSELKYLNLGSNQL---NGQLSDMFQKNEKLETLDLSKNQLTGELPRS 182
               +       +  L++LNL  N     N Q ++  Q   +LE L LS   L+     +
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

Query: 183 FASLSSLKKLYLQNNQFTG-SINVLGKLPLDELNVENNKFSGWVPEELK 230
           F SL  +  + L +N+ T  SI  L  L    LN+ +N  S  +P  L 
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLP 544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  105 bits (263), Expect = 4e-24
 Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 8/165 (4%)

Query: 66  CSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLS 123
               SV  I L                  +  LD++  +L   +P  L     LK L LS
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLS 309

Query: 124 ENQFSGTVPYSISQMSELKYLNLGSNQLNGQL-SDMFQKNEKLETLDLSKNQLT--GELP 180
            N+F      S S    L +L++  N    +L +   +  E L  LDLS + +       
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 181 RSFASLSSLKKLYLQNNQFTG-SINVLGKLP-LDELNVENNKFSG 223
               +LS L+ L L  N+          + P L+ L++   +   
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  103 bits (260), Expect = 7e-24
 Identities = 31/165 (18%), Positives = 59/165 (35%), Gaps = 11/165 (6%)

Query: 75  KLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVP 132
            +            L++L+    L++S N             P L+ LDL+  +      
Sbjct: 361 DIETSDCCNLQLRNLSHLQ---SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417

Query: 133 YSI-SQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTG---ELPRSFASLSS 188
            S    +  LK LNL  + L+     +F     L+ L+L  N       +   S  +L  
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477

Query: 189 LKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVPEELKD 231
           L+ L L     +    +    L  ++ +++ +N+ +    E L  
Sbjct: 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  103 bits (259), Expect = 1e-23
 Identities = 28/144 (19%), Positives = 47/144 (32%), Gaps = 4/144 (2%)

Query: 92  LKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSN 149
             S   L+ S N L            NL  LDL+  Q       +      L  L L +N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 150 QLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG-SINVLGK 208
            L           + L+ L   +  ++        +  +L+ LYL +N  +   +     
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 209 LP-LDELNVENNKFSGWVPEELKD 231
              L  L+ +NN       E++  
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSS 175

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  101 bits (253), Expect = 6e-23
 Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 8/142 (5%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTV---PYSISQMSELKY 143
             NL  +  L++S++ L  S        P L+HL+L  N F         S+  +  L+ 
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 144 LNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI 203
           L L    L+      F   + +  +DLS N+LT     + + L  +  L L +N  +  +
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539

Query: 204 -NVLGKLP-LDELNVENNKFSG 223
            ++L  L     +N+  N    
Sbjct: 540 PSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 99.3 bits (248), Expect = 3e-22
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 10/166 (6%)

Query: 67  SGSSVTEIKLSGLGLNGQL--GYQLTNLKSVSYLDVSNNNLKDSIPYQLPP----NLKHL 120
             +    +   G      +  G + + ++S+      + + +D  P         +++ +
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 121 DLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELP 180
           +L ++ F      +    S L+ L+L +  L+ +L         L+ L LS N+      
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ 318

Query: 181 RSFASLSSLKKLYLQNNQFTGSI--NVLGKLP-LDELNVENNKFSG 223
            S ++  SL  L ++ N     +    L  L  L EL++ ++    
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 98.5 bits (246), Expect = 5e-22
 Identities = 23/141 (16%), Positives = 55/141 (39%), Gaps = 6/141 (4%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP-----PNLKHLDLS 123
             +  + LS   L+         L ++ +L++  N+       +         L+ L LS
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 124 ENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSF 183
               S    ++ + +  + +++L  N+L     +     + +  L+L+ N ++  LP   
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL 543

Query: 184 ASLSSLKKLYLQNNQFTGSIN 204
             LS  + + L+ N    + +
Sbjct: 544 PILSQQRTINLRQNPLDCTCS 564

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 93.9 bits (234), Expect = 1e-20
 Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 10/164 (6%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLK--SVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSE 124
            S+       +            L   SV  +++  +   +           L+ LDL+ 
Sbjct: 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287

Query: 125 NQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGEL-PRSF 183
              S  +P  +  +S LK L L +N+              L  L +  N    EL     
Sbjct: 288 THLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346

Query: 184 ASLSSLKKLYLQNNQFTGS---INVLGKLP-LDELNVENNKFSG 223
            +L +L++L L ++    S      L  L  L  LN+  N+   
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 81.6 bits (202), Expect = 1e-16
 Identities = 25/169 (14%), Positives = 59/169 (34%), Gaps = 11/169 (6%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQ 126
            ++  +     G++      L N K++  L + +N++      +      LK LD   N 
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164

Query: 127 FSGTVPYSISQMSELK--YLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPR--S 182
                   +S + +     LNL  N + G     F      ++L+    Q    + +   
Sbjct: 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV-FQSLNFGGTQNLLVIFKGLK 223

Query: 183 FASLSSLKKLYLQNNQFT----GSINVLGKLPLDELNVENNKFSGWVPE 227
            +++ SL     ++             L ++ ++ +N++ + F      
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.8 bits (200), Expect = 3e-16
 Identities = 21/142 (14%), Positives = 43/142 (30%), Gaps = 9/142 (6%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNL 146
           L+  K++ +L      +       L     L+ L L  N  S           +LK L+ 
Sbjct: 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160

Query: 147 GSNQLNGQLSDMFQ--KNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI- 203
            +N ++    +     +     +L+L+ N +   +       +  + L     Q    I 
Sbjct: 161 QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIF 219

Query: 204 --NVLGKLP-LDELNVENNKFS 222
                  +  L     E+    
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDE 241

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 21/129 (16%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPP-NLKHLDLSENQF 127
             +  + LS   L+    +  T+LK ++++D+S+N L  S    L      +L+L+ N  
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHI 535

Query: 128 SGTVPYSISQMSELKYLNLGSNQLNG----------------QLSD----MFQKNEKLET 167
           S  +P  +  +S+ + +NL  N L+                 +L D    + +    L  
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRG 595

Query: 168 LDLSKNQLT 176
           + LS   L+
Sbjct: 596 VRLSDVTLS 604

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  110 bits (276), Expect = 7e-26
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 3/128 (2%)

Query: 98  LDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSD 157
               +  L   +P  +P + K++DLS N       YS S  SEL++L+L   ++      
Sbjct: 16  YQCMDQKLS-KVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 74

Query: 158 MFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELN 215
            +     L  L L+ N +    P SF+ L+SL+ L     +        +G+L  L +LN
Sbjct: 75  AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134

Query: 216 VENNKFSG 223
           V +N    
Sbjct: 135 VAHNFIHS 142

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  109 bits (274), Expect = 1e-25
 Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 5/139 (3%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSI-SQMSELKYLN 145
             +L+ + YLD+S  N K           +L  L ++ N F      ++ +  + L +L+
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

Query: 146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINV 205
           L   QL      +F    +L+ L++S N L       +  L SL  L    N+   S  +
Sbjct: 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539

Query: 206 LGKLP--LDELNVENNKFS 222
           L   P  L   N+ NN  +
Sbjct: 540 LQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  106 bits (266), Expect = 1e-24
 Identities = 31/135 (22%), Positives = 48/135 (35%), Gaps = 3/135 (2%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPY---QLPPNLKHLDLSEN 125
             +  + +S              L S++ L ++ N+ KD+          NL  LDLS+ 
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

Query: 126 QFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFAS 185
           Q           +  L+ LN+  N L    S  + +   L TLD S N++          
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

Query: 186 LSSLKKLYLQNNQFT 200
             SL    L NN   
Sbjct: 544 PKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  102 bits (256), Expect = 3e-23
 Identities = 39/166 (23%), Positives = 60/166 (36%), Gaps = 9/166 (5%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFS 128
                + +    L       L  LK    L ++ N    S      P+L +LDLS N  S
Sbjct: 307 FKWQSLSIIRCQLKQFPTLDLPFLK---SLTLTMNKGSISFKKVALPSLSYLDLSRNALS 363

Query: 129 GTVPYSISQM--SELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRS-FAS 185
            +   S S +  + L++L+L  N     +S  F   E+L+ LD   + L      S F S
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422

Query: 186 LSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVPEEL 229
           L  L  L +           +   L  L+ L +  N F       +
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  102 bits (255), Expect = 4e-23
 Identities = 43/193 (22%), Positives = 73/193 (37%), Gaps = 22/193 (11%)

Query: 52  GGGDPCGEHWKGIT--CSG-----------SSVTEIKLSGLGLNGQLGYQLTNLKSVSYL 98
           G  +PC E    IT  C             SS   I LS   L     Y  +N   + +L
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWL 61

Query: 99  DVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLS 156
           D+S   ++           +L +L L+ N      P S S ++ L+ L     +L    S
Sbjct: 62  DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES 121

Query: 157 DMFQKNEKLETLDLSKNQLTG-ELPRSFASLSSLKKLYLQNNQFTG----SINVLGKLP- 210
               +   L+ L+++ N +   +LP  F++L++L  + L  N         +  L + P 
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181

Query: 211 -LDELNVENNKFS 222
               L++  N   
Sbjct: 182 VNLSLDMSLNPID 194

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  100 bits (252), Expect = 8e-23
 Identities = 40/150 (26%), Positives = 62/150 (41%), Gaps = 9/150 (6%)

Query: 82  NGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP----PNLKHLDLSENQFSGTVPYSISQ 137
            G + ++   L S+SYLD+S N L  S           +L+HLDLS N     +  +   
Sbjct: 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMG 397

Query: 138 MSELKYLNLGSNQLNGQLS-DMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQN 196
           + EL++L+   + L        F   EKL  LD+S      +    F  L+SL  L +  
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 197 NQFTGSI--NVLGKLP-LDELNVENNKFSG 223
           N F  +   NV      L  L++   +   
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 97.0 bits (242), Expect = 2e-21
 Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 8/149 (5%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQL--PPNLKHLDLSENQFSGTVPYSISQMSELKYLNL 146
              L  +S L ++ N ++   P       +L++L   E + +    + I Q+  LK LN+
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135

Query: 147 GSNQLNG-QLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLK----KLYLQNNQFTG 201
             N ++  +L   F     L  +DLS N +          L         L +  N    
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195

Query: 202 -SINVLGKLPLDELNVENNKFSGWVPEEL 229
                   + L EL +  N  S  + +  
Sbjct: 196 IQDQAFQGIKLHELTLRGNFNSSNIMKTC 224

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 96.3 bits (240), Expect = 3e-21
 Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 29/187 (15%)

Query: 70  SVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKD---------------------S 108
           ++ E +L+          +   L +VS + ++  ++K                       
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ 321

Query: 109 IPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQ--KNEKLE 166
            P    P LK L L+ N+  G++ +    +  L YL+L  N L+      +       L 
Sbjct: 322 FPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379

Query: 167 TLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG--SINVLGKLP-LDELNVENNKFSG 223
            LDLS N     +  +F  L  L+ L  Q++        +    L  L  L++       
Sbjct: 380 HLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 224 WVPEELK 230
                  
Sbjct: 439 DFDGIFL 445

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.5 bits (199), Expect = 3e-16
 Identities = 31/180 (17%), Positives = 62/180 (34%), Gaps = 19/180 (10%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKD-SIPYQLP--PNLKHLDLSEN 125
           +S+  +      L     + +  L ++  L+V++N +    +P       NL H+DLS N
Sbjct: 104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163

Query: 126 QFSGTVPYSISQMSELK----YLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPR 181
                    +  + E       L++  N ++      F +  KL  L L  N  +  + +
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF-QGIKLHELTLRGNFNSSNIMK 222

Query: 182 -SFASLSSLKKLYLQNNQFTGSINV----------LGKLPLDELNVENNKFSGWVPEELK 230
               +L+ L    L   +F    N+          L  + +DE  +           +  
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.1 bits (180), Expect = 6e-14
 Identities = 18/147 (12%), Positives = 41/147 (27%), Gaps = 11/147 (7%)

Query: 88  QLTNLK-SVSYLDVSNNNLKDSIPYQL-PPNLKHLDLSENQFSGTVP-YSISQMSELKYL 144
            L         LD+S N +            L  L L  N  S  +    +  ++ L   
Sbjct: 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234

Query: 145 NLGSNQLNGQLS------DMFQKNEKL--ETLDLSKNQLTGELPRSFASLSSLKKLYLQN 196
            L   +   + +       + +    +  +   L+      +    F  L+++  + L  
Sbjct: 235 RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294

Query: 197 NQFTGSINVLGKLPLDELNVENNKFSG 223
                  +V        L++   +   
Sbjct: 295 VSIKYLEDVPKHFKWQSLSIIRCQLKQ 321

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  108 bits (273), Expect = 2e-25
 Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 16/168 (9%)

Query: 76  LSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKD-SIPYQLP--PNLKHLDLSENQFSGTVP 132
              L  + Q        + +  + +  NNLK   +   L     L  L+   NQ  G +P
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

Query: 133 YSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFA--SLSSLK 190
            +     +L  LNL  NQ+    ++     E++E L  + N+L   +P  F   S+S + 
Sbjct: 348 -AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMS 405

Query: 191 KLYLQNNQFTGSI-NVLGKLP--------LDELNVENNKFSGWVPEEL 229
            +    N+           L         +  +N+ NN+ S +  E  
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF 453

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  106 bits (267), Expect = 1e-24
 Identities = 23/161 (14%), Positives = 58/161 (36%), Gaps = 22/161 (13%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIP---YQLPPNLKHLDLSENQFSGTVP-YSISQMSELKYL 144
             +   ++ L+++ N +   IP         +++L  + N+       +    +S +  +
Sbjct: 349 FGSEIKLASLNLAYNQI-TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAI 407

Query: 145 NLGSNQLNGQLSDMFQ-------KNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNN 197
           +   N++       F        K   + +++LS NQ++      F++ S L  + L  N
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467

Query: 198 QFTG--------SINVLGKLP-LDELNVENNKFSGWVPEEL 229
             T                   L  +++  NK +  + ++ 
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDF 507

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  105 bits (265), Expect = 2e-24
 Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 13/162 (8%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIP--YQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNL 146
           L  +K +  L+   N L+  +P        L  L+L+ NQ +           +++ L+ 
Sbjct: 326 LQKMKKLGMLECLYNQLEGKLPAFGSEI-KLASLNLAYNQITEIPANFCGFTEQVENLSF 384

Query: 147 GSNQLNGQLSDMFQKN-EKLETLDLSKNQLTG-------ELPRSFASLSSLKKLYLQNNQ 198
             N+L    +    K+   +  +D S N++          L  +     ++  + L NNQ
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444

Query: 199 FTGSI-NVLGKLP-LDELNVENNKFSGWVPEELKDIAKTGGN 238
            +     +      L  +N+  N  +      LKD  +   N
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.0 bits (234), Expect = 1e-20
 Identities = 28/182 (15%), Positives = 59/182 (32%), Gaps = 22/182 (12%)

Query: 66  CSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP----------P 115
             G +V+ I LS   ++       +    +S +++  N L   IP               
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML-TEIPKNSLKDENENFKNTY 488

Query: 116 NLKHLDLSENQFSGTVPYSI--SQMSELKYLNLGSNQLNGQLSDMFQKNEKLETL----- 168
            L  +DL  N+ +  +      + +  L  ++L  N  +         +  L+       
Sbjct: 489 LLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546

Query: 169 -DLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPE 227
            D   N+   E P       SL +L + +N        +    +  L++++N        
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN-ISVLDIKDNPNISIDLS 605

Query: 228 EL 229
            +
Sbjct: 606 YV 607

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.5 bits (225), Expect = 2e-19
 Identities = 14/167 (8%), Positives = 45/167 (26%), Gaps = 18/167 (10%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQ 126
           S + +  ++       +          + +   +NN+   +   +     L+   +  + 
Sbjct: 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSP 217

Query: 127 FSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASL 186
           F         +    +Y               +   + L  +++       +LP    +L
Sbjct: 218 FVAENICEAWENENSEYAQQ-----YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272

Query: 187 SSLKKLYLQNNQFTG------SINVLGKLP----LDELNVENNKFSG 223
             ++ + +  N+             L   P    +  + +  N    
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.0 bits (203), Expect = 1e-16
 Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 12/119 (10%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQL--PPNLKHLDLSE------NQFSGTVPYSISQMS 139
           + T L  +  +D+S N+     P Q      LK   +        N+     P  I+   
Sbjct: 508 RATTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566

Query: 140 ELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQ 198
            L  L +GSN +      +      +  LD+  N                    L  ++
Sbjct: 567 SLTQLQIGSNDIRKVNEKITPN---ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.6 bits (189), Expect = 5e-15
 Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 9/122 (7%)

Query: 116 NLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQK----NEKLETLDLS 171
            +  L L     SG VP +I Q++EL+ L LGS+           K    N   E     
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 172 KNQLTGELPRSFA--SLSSLKKLYLQNNQFTGSINVLGKLPLD--ELNVENNKFSGWVPE 227
           +                S L K  + ++    SI    ++ L   ++   +N  +  V +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK 200

Query: 228 EL 229
            +
Sbjct: 201 AV 202

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 5/91 (5%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLN 145
            L      +  D   N      P  +   P+L  L +  N     V   I     +  L+
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLD 593

Query: 146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLT 176
           +  N              +     L  ++  
Sbjct: 594 IKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 15/97 (15%), Positives = 36/97 (37%), Gaps = 9/97 (9%)

Query: 76  LSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSI 135
             G     +    +T   S++ L + +N+++  +  ++ PN+  LD+ +N         +
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKITPNISVLDIKDNPNISIDLSYV 607

Query: 136 SQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSK 172
               E     L  ++         Q     + LD+ +
Sbjct: 608 CPYIEAGMYMLFYDKT--------QDIRGCDALDIKR 636

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  105 bits (265), Expect = 2e-24
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 7/160 (4%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLK---DSIPYQLPPNLKHLDLSEN 125
           +S+  + LS  G+   +      L+ + +LD  ++NLK   +   +    NL +LD+S  
Sbjct: 373 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 126 QFSGTVPYSISQMSELKYLNLGSNQLNGQL-SDMFQKNEKLETLDLSKNQLTGELPRSFA 184
                     + +S L+ L +  N        D+F +   L  LDLS+ QL    P +F 
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 185 SLSSLKKLYLQNNQFTG-SINVLGKLP-LDELNVENNKFS 222
           SLSSL+ L + +NQ       +  +L  L ++ +  N + 
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 99.4 bits (248), Expect = 2e-22
 Identities = 38/126 (30%), Positives = 52/126 (41%), Gaps = 3/126 (2%)

Query: 99  DVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDM 158
                N    IP  LP + K+LDLS N       YS     EL+ L+L   ++       
Sbjct: 13  QCMELNF-YKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 159 FQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG-SINVLGKLP-LDELNV 216
           +Q    L TL L+ N +      +F+ LSSL+KL              +G L  L ELNV
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 217 ENNKFS 222
            +N   
Sbjct: 132 AHNLIQ 137

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 96.7 bits (241), Expect = 1e-21
 Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 9/166 (5%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQ-- 126
                ++L           +L +LK    L  ++N   ++      P+L+ LDLS N   
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLK---RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360

Query: 127 FSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRS-FAS 185
           F G    S    + LKYL+L  N +   +S  F   E+LE LD   + L      S F S
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 186 LSSLKKLYLQNNQFTGSIN-VLGKLP-LDELNVENNKFSGWVPEEL 229
           L +L  L + +     + N +   L  L+ L +  N F      ++
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 96.7 bits (241), Expect = 2e-21
 Identities = 41/191 (21%), Positives = 74/191 (38%), Gaps = 24/191 (12%)

Query: 55  DPCGEHWKGIT--CSG-----------SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVS 101
           +PC E    IT  C              S   + LS   L     Y   +   +  LD+S
Sbjct: 1   EPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60

Query: 102 NNNLKDSIP---YQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDM 158
              ++         L  +L  L L+ N        + S +S L+ L      L    +  
Sbjct: 61  RCEIQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119

Query: 159 FQKNEKLETLDLSKNQLT-GELPRSFASLSSLKKLYLQNNQFT----GSINVLGKLPLD- 212
               + L+ L+++ N +   +LP  F++L++L+ L L +N+        + VL ++PL  
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 213 -ELNVENNKFS 222
             L++  N  +
Sbjct: 180 LSLDLSLNPMN 190

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 93.2 bits (232), Expect = 2e-20
 Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 5/125 (4%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTV-PYSISQMSELKYLN 145
             +L+++ YLD+S+ + + +         +L+ L ++ N F     P   +++  L +L+
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRS-FASLSSLKKLYLQNNQFTGSIN 204
           L   QL       F     L+ L+++ NQL   +P   F  L+SL+K++L  N +  S  
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

Query: 205 VLGKL 209
            +  L
Sbjct: 536 RIDYL 540

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 92.1 bits (229), Expect = 5e-20
 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 13/152 (8%)

Query: 87  YQLTNLKSVSYLDVSNNNLKDSIPYQL---PPNLKHLDLSENQFSGTVPYSISQMSELKY 143
             L++L     L ++ N ++ S+         +L+ L   E   +    + I  +  LK 
Sbjct: 73  QSLSHLS---TLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 144 LNLGSNQLN-GQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLK----KLYLQNNQ 198
           LN+  N +   +L + F     LE LDLS N++          L  +      L L  N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 199 FTG-SINVLGKLPLDELNVENNKFSGWVPEEL 229
                     ++ L +L + NN  S  V +  
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 35/172 (20%), Positives = 69/172 (40%), Gaps = 19/172 (11%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKD-SIPYQLP--PNLKHLDLSEN 125
           SS+ ++      L     + + +LK++  L+V++N ++   +P       NL+HLDLS N
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 126 QFSGTVPYSISQMSELKY----LNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPR 181
           +        +  + ++      L+L  N +N      F K  +L  L L  N  +  + +
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMK 218

Query: 182 -SFASLSSLKKLYLQNNQFTGSINV----------LGKLPLDELNVENNKFS 222
                L+ L+   L   +F    N+          L  L ++E  +    + 
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 25/147 (17%), Positives = 43/147 (29%), Gaps = 14/147 (9%)

Query: 88  QLTNLKSVSY-LDVSNNNLKDSIPYQL--PPNLKHLDLSENQFSGTVP-YSISQMSELKY 143
            L  +  ++  LD+S N +   I         L  L L  N  S  V    I  ++ L+ 
Sbjct: 171 VLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 144 LNL------GSNQLNGQLSDMFQKNEKLETLDLSKNQLTG---ELPRSFASLSSLKKLYL 194
             L          L        +    L   +     L     ++   F  L+++    L
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 195 QNNQFTGSINVLGKLPLDELNVENNKF 221
            +       +         L + N KF
Sbjct: 290 VSVTIERVKDFSYNFGWQHLELVNCKF 316

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  101 bits (254), Expect = 7e-24
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 6/135 (4%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           + N+  ++ L + NN + D  P      L  L++  NQ S     ++  +++LK LN+GS
Sbjct: 217 VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGS 274

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
           NQ++     +     +L +L L+ NQL  E       L++L  L+L  N  T  I  L  
Sbjct: 275 NQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT-DIRPLAS 331

Query: 209 LP-LDELNVENNKFS 222
           L  +D  +  N    
Sbjct: 332 LSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  100 bits (251), Expect = 2e-23
 Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 8/147 (5%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           + NL  +  L ++ N ++D  P     +L +     NQ +   P  ++ M+ L  L +G+
Sbjct: 173 IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGN 230

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
           N++            +L  L++  NQ++     +   L+ LK L + +NQ +  I+VL  
Sbjct: 231 NKITD--LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS-DISVLNN 285

Query: 209 LP-LDELNVENNKFSGWVPEELKDIAK 234
           L  L+ L + NN+      E +  +  
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTN 312

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 96.5 bits (241), Expect = 4e-22
 Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 7/136 (5%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
              L+S++ L V+   +      +   NL++L+L+ NQ +   P  +S + +L  L +G+
Sbjct: 40  QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGT 97

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
           N++        Q    L  L L+++ ++       A+L+ +  L L  N     ++ L  
Sbjct: 98  NKITD--ISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSPLSN 153

Query: 209 LP-LDELNVENNKFSG 223
           +  L+ L V  +K   
Sbjct: 154 MTGLNYLTVTESKVKD 169

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 94.9 bits (237), Expect = 1e-21
 Identities = 23/136 (16%), Positives = 56/136 (41%), Gaps = 7/136 (5%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           +  L ++ YL+++ N + D  P      L +L +  N+   T   ++  ++ L+ L L  
Sbjct: 62  IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNE 119

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
           + ++           K+ +L+L  N          ++++ L  L +  ++    +  +  
Sbjct: 120 DNISD--ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVK-DVTPIAN 175

Query: 209 LP-LDELNVENNKFSG 223
           L  L  L++  N+   
Sbjct: 176 LTDLYSLSLNYNQIED 191

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 88.8 bits (221), Expect = 2e-19
 Identities = 27/143 (18%), Positives = 58/143 (40%), Gaps = 9/143 (6%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
             +L       +   ++ D +  +   ++  L ++  + + ++   I  ++ L+YLNL  
Sbjct: 18  DADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNG 75

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
           NQ+            KL  L +  N++T     +  +L++L++LYL  +  +     L  
Sbjct: 76  NQITD--ISPLSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP-LAN 130

Query: 209 LP-LDELNVENNKFSGWVPEELK 230
           L  +  LN+  N         L 
Sbjct: 131 LTKMYSLNLGANHNLS-DLSPLS 152

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 79.9 bits (198), Expect = 1e-16
 Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 8/127 (6%)

Query: 98  LDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSD 157
           L      +    P           L +   +  V     ++  +  L +   ++   +  
Sbjct: 5   LATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQG 61

Query: 158 MFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNV 216
             +    LE L+L+ NQ+T   P   ++L  L  LY+  N+ T  I+ L  L  L EL +
Sbjct: 62  -IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISALQNLTNLRELYL 117

Query: 217 ENNKFSG 223
             +  S 
Sbjct: 118 NEDNISD 124

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  104 bits (260), Expect = 9e-24
 Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 17/172 (9%)

Query: 72  TEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSG 129
            +                +NLK ++ +++ N      +P  L   P L+ L+++ N+   
Sbjct: 470 EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

Query: 130 ---------TVPYSISQMSELKYLNLGSNQLNG-QLSDMFQKNEKLETLDLSKNQLTGEL 179
                     +        +++   +G N L     S   QK  KL  LD   N++   L
Sbjct: 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HL 588

Query: 180 PRSFASLSSLKKLYLQNNQFTGSINVLGKLP--LDELNVENNKFSGWVPEEL 229
             +F +   L  L L  NQ              ++ L   +NK    +P   
Sbjct: 589 E-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIF 638

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  102 bits (255), Expect = 4e-23
 Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 18/162 (11%)

Query: 76  LSGLGLNGQLGY---QLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVP 132
                L  ++ +    +  L  +  +  +N+            + +  +    +      
Sbjct: 428 TQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI---AVDWEDANSDYAKQYENEE 484

Query: 133 YSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTG---------ELPRSF 183
            S S + +L  + L +     QL D      +L++L+++ N+             L    
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE 544

Query: 184 ASLSSLKKLYLQNNQFTGSI--NVLGKLP-LDELNVENNKFS 222
            +   ++  Y+  N          L K+  L  L+  +NK  
Sbjct: 545 DTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =   99 bits (249), Expect = 2e-22
 Identities = 23/160 (14%), Positives = 57/160 (35%), Gaps = 22/160 (13%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPY---QLPPNLKHLDLSENQFSGTVP--YSISQMSELKY 143
                 ++ L +  N ++  IP         ++ L  S N+    +P  ++   +  +  
Sbjct: 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGS 648

Query: 144 LNLGSNQLNGQLSDMFQKNE-----KLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQ 198
           ++   N++  +  ++    +        T+ LS N++       FA+ S +  + L NN 
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 199 FT--------GSINVLGKLP-LDELNVENNKFSGWVPEEL 229
            T                   L  +++  NK +  + ++ 
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDF 747

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 99.6 bits (248), Expect = 3e-22
 Identities = 33/177 (18%), Positives = 65/177 (36%), Gaps = 20/177 (11%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPY-----QLP------PNL 117
             +T+++L       QL   L +L  +  L+++ N    +        +L       P +
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 118 KHLDLSENQFSG-TVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLT 176
           +   +  N         S+ +M +L  L+   N++   L   F  N KL  L L  NQ+ 
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIE 608

Query: 177 GELPRS-FASLSSLKKLYLQNNQFTG--SINVLGKLP-LDELNVENNKFSGWVPEEL 229
            E+P    A    ++ L   +N+     +I     +  +  ++   NK        +
Sbjct: 609 -EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNI 663

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 98.8 bits (246), Expect = 6e-22
 Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 17/162 (10%)

Query: 83  GQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP----PNLKHLDLSENQFSGTVPYSISQM 138
            +L         +    +  NNL+   P          L  LD   N+    +  +    
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN 594

Query: 139 SELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPR--SFASLSSLKKLYLQN 196
            +L  L L  NQ+     D     +++E L  S N+L   +P   +  S+  +  +    
Sbjct: 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSY 653

Query: 197 NQFTG-------SINVLGKLPLDELNVENNKFSGWVPEELKD 231
           N+          S++    +    + +  N+   +  E    
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT 695

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.9 bits (223), Expect = 4e-19
 Identities = 26/177 (14%), Positives = 61/177 (34%), Gaps = 24/177 (13%)

Query: 65  TCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP---------- 114
              G + + + LS   +             +S + +SNN +  SIP              
Sbjct: 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNT 727

Query: 115 PNLKHLDLSENQFSGTVPYSI--SQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSK 172
             L  +DL  N+ + ++      + +  L  +++  N  +         + +L+   +  
Sbjct: 728 YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785

Query: 173 ------NQLTGELPRSFASLSSLKKLYLQNNQFTG-SINVLGKLPLDELNVENNKFS 222
                 N++  + P    +  SL +L + +N        +  +  L  L++ +N   
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQ--LYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.9 bits (210), Expect = 1e-17
 Identities = 34/247 (13%), Positives = 76/247 (30%), Gaps = 45/247 (18%)

Query: 28  QDASALNVMYTSLHSPS------------QLSNWKAGGGDPCGEHWKGITCSG-SSVTEI 74
           +D  AL  ++ +L   +               NW             G+       VT +
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGL 328

Query: 75  KLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIP----YQLPPNLKHLDLSENQFSGT 130
            L+G G  G++   +  L  +  L    ++   S       +L P++        +    
Sbjct: 329 SLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK 388

Query: 131 VPYSISQMSELKYLNLGSNQLN-----GQLSDMFQKNEKLETLDLSKNQLTGELPRSFAS 185
               +     L   +L  + +N       +    + + K   +    N++T  + ++   
Sbjct: 389 -KMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR 446

Query: 186 LSSLKKLYLQNNQFTGSINVLGKLPLD---------------------ELNVENNKFSGW 224
           L+ L+ +Y  N+ FT     +     +                     ++ + N      
Sbjct: 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506

Query: 225 VPEELKD 231
           +P+ L D
Sbjct: 507 LPDFLYD 513

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 12/119 (10%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQL--PPNLKHLDLSE------NQFSGTVPYSISQMS 139
           + T L  +S +DVS N    S P Q      LK   +        N+     P  I+   
Sbjct: 748 RATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806

Query: 140 ELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQ 198
            L  L +GSN +      +  +   L  LD++ N        S           L  ++
Sbjct: 807 SLIQLQIGSNDIRKVDEKLTPQ---LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 3e-08
 Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 5/91 (5%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLN 145
           QL         D   N +    P  +   P+L  L +  N     V   +    +L  L+
Sbjct: 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILD 833

Query: 146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLT 176
           +  N              +     L  ++  
Sbjct: 834 IADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 76  LSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSI 135
             G  +  Q    +T   S+  L + +N+++  +  +L P L  LD+++N        S+
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQLYILDIADNPNISIDVTSV 847

Query: 136 SQMSELKYLNLGSNQLN 152
               E     L  ++  
Sbjct: 848 CPYIEAGMYVLLYDKTQ 864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 97.7 bits (244), Expect = 1e-23
 Identities = 23/136 (16%), Positives = 54/136 (39%), Gaps = 3/136 (2%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           +    ++  L ++N +  +  P     NL+ L +     +     ++S ++ L  L++  
Sbjct: 62  IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
           +  +  +        K+ ++DLS N    ++     +L  LK L +Q +        +  
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYRGIED 179

Query: 209 LP-LDELNVENNKFSG 223
            P L++L   +    G
Sbjct: 180 FPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 96.6 bits (241), Expect = 2e-23
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 3/134 (2%)

Query: 90  TNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSN 149
             + S++Y+ ++N N+ D    +   N+K L ++    +   P  IS +S L+ L +   
Sbjct: 41  AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK 98

Query: 150 QLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKL 209
            +             L  LD+S +     +     +L  +  + L  N     I  L  L
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTL 158

Query: 210 P-LDELNVENNKFS 222
           P L  LN++ +   
Sbjct: 159 PELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.8 bits (156), Expect = 6e-12
 Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 22/128 (17%)

Query: 115 PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQL------------------NGQLS 156
              K         S T   + +QM+ L Y+ L +  +                  N   +
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT 79

Query: 157 DM--FQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGS-INVLGKLP-LD 212
           +         LE L +    +T +   + + L+SL  L + ++    S +  +  LP ++
Sbjct: 80  NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139

Query: 213 ELNVENNK 220
            +++  N 
Sbjct: 140 SIDLSYNG 147

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.4 bits (147), Expect = 8e-11
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 15/119 (12%)

Query: 62  KGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKH 119
           + +   G  VT  K+  L         LT+L     LD+S++   DSI  ++   P +  
Sbjct: 91  ERLRIMGKDVTSDKIPNLS-------GLTSLT---LLDISHSAHDDSILTKINTLPKVNS 140

Query: 120 LDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGE 178
           +DLS N     +   +  + ELK LN+  + ++       +   KL  L      + G+
Sbjct: 141 IDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YRG-IEDFPKLNQLYAFSQTIGGK 196

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  101 bits (253), Expect = 5e-23
 Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 4/134 (2%)

Query: 98  LDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSD 157
            D  + +   SIP  L   +K LDLS N+ +      +   + L+ L L S+++N    D
Sbjct: 10  CDGRSRSF-TSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68

Query: 158 MFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT--GSINVLGKLP-LDEL 214
            F     LE LDLS N L+      F  LSSLK L L  N +   G  ++   L  L  L
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

Query: 215 NVENNKFSGWVPEE 228
            + N +    +   
Sbjct: 129 RIGNVETFSEIRRI 142

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 95.9 bits (239), Expect = 3e-21
 Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 11/162 (6%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPY---QLPPNLKHLDLSEN 125
            ++  + +    L   L    + L+ V  + V N+ +   +P    Q   +L+ LDLSEN
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344

Query: 126 QFSGTVPYS---ISQMSELKYLNLGSNQLN--GQLSDMFQKNEKLETLDLSKNQLTGELP 180
                   +         L+ L L  N L    +  ++    + L +LD+S+N     +P
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMP 403

Query: 181 RSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFS 222
            S      ++ L L +      +       L+ L+V NN   
Sbjct: 404 DSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 86.3 bits (214), Expect = 4e-18
 Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 6/145 (4%)

Query: 94  SVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQL 151
           ++  LD+S N +       L    NL+ L L  ++ +     +   +  L++L+L  N L
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 152 NGQLSDMFQKNEKLETLDLSKNQLTG-ELPRSFASLSSLKKLYLQNNQFTGSI--NVLGK 208
           +   S  F     L+ L+L  N      +   F +L++L+ L + N +    I       
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 209 LP-LDELNVENNKFSGWVPEELKDI 232
           L  L+EL ++      +  + LK I
Sbjct: 147 LTSLNELEIKALSLRNYQSQSLKSI 171

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 84.4 bits (209), Expect = 1e-17
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 29/160 (18%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQ-----LPPNLKHLDLSENQFS--GTVPYSISQMSEL 141
             +LKS+ +LD+S N + +            P+L+ L LS+N           +  +  L
Sbjct: 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389

Query: 142 KYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRS------------------F 183
             L++  N  +  + D  Q  EK+  L+LS   +   +                      
Sbjct: 390 TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFS 447

Query: 184 ASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFS 222
             L  L++LY+  N+   ++      P L  + +  N+  
Sbjct: 448 LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 84.0 bits (208), Expect = 2e-17
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 84  QLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKY 143
            +       + + +L++S+  ++  +   +P  L+ LD+S N    +       +  L+ 
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLD-SFS---LFLPRLQE 455

Query: 144 LNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
           L +  N+L             L  + +S+NQL       F  L+SL+K++L  N +
Sbjct: 456 LYISRNKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 83.6 bits (207), Expect = 3e-17
 Identities = 26/140 (18%), Positives = 59/140 (42%), Gaps = 8/140 (5%)

Query: 91  NLKSVSYLDVSNNNLKDSIPYQL---PPNLKHLDLSENQFSG-TVPYSISQMSELKYLNL 146
           +L S+ +LD+S+N+L  S+         +LK+L+L  N +    V      ++ L+ L +
Sbjct: 72  SLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130

Query: 147 GSNQLNGQLS-DMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINV 205
           G+ +   ++    F     L  L++    L     +S  S+  +  L L  ++    + +
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190

Query: 206 LGKL--PLDELNVENNKFSG 223
              +   +  L + +   + 
Sbjct: 191 FADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.9 bits (205), Expect = 4e-17
 Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIP---YQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLN 145
           L    ++  L + ++ +  +I    +    +L+HLDLS+N  S         +S LKYLN
Sbjct: 46  LRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104

Query: 146 LGSNQLNG-QLSDMFQKNEKLETLDLSKNQLTGELPR-SFASLSSLKKLYLQNNQFTG-S 202
           L  N      ++ +F     L+TL +   +   E+ R  FA L+SL +L ++        
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164

Query: 203 INVLGKLP-LDELNVENNKFS 222
              L  +  +  L +  ++ +
Sbjct: 165 SQSLKSIRDIHHLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 17/156 (10%)

Query: 84  QLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP----------PNLKHLDLSENQFSGTVPY 133
           +L   +  L  V + D + N L D  P +              ++ L + +      +  
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304

Query: 134 SISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGEL---PRSFASLSSLK 190
             S + ++K + + ++++        Q  + LE LDLS+N +  E         +  SL+
Sbjct: 305 VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364

Query: 191 KLYLQNNQFT---GSINVLGKLP-LDELNVENNKFS 222
            L L  N       +  +L  L  L  L++  N F 
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 73.6 bits (181), Expect = 4e-14
 Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 6/118 (5%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLP----PNLKHLDLSENQFSGTVPY-SISQMSELKY 143
              L S+ YL++  N  + ++          NL+ L +   +    +     + ++ L  
Sbjct: 94  FGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152

Query: 144 LNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG 201
           L + +  L    S   +    +  L L  ++    L      LSS++ L L++     
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.5 bits (178), Expect = 9e-14
 Identities = 29/163 (17%), Positives = 51/163 (31%), Gaps = 7/163 (4%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQL---PPNLKHLDLSENQFSGTVPYSISQMSELKYLN 145
             NL ++  L + N      I         +L  L++           S+  + ++ +L 
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFA---SLSSLKKLYLQNNQFT-G 201
           L  ++    L         +  L+L    L              S +KKL  + +  T  
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 202 SINVLGKLPLDELNVENNKFSGWVPEELKDIAKTGGNSWSSSP 244
           S N L KL    L +   +F       L D   +  +  S   
Sbjct: 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG 281

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 35/176 (19%), Positives = 69/176 (39%), Gaps = 22/176 (12%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFS 128
             +  + L        L      L SV YL++ + NL       LP +     + +  F 
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231

Query: 129 GTVPYSIS------------QMSELKYLNLGSNQL---NGQLSDMFQKNEKLET-----L 168
           G+V    S            ++SE+++ +   N L   N   SD+  +  K+ET     L
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291

Query: 169 DLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG-SINVLGKLP-LDELNVENNKFS 222
            + +  L  +L   ++ L  +K++ ++N++      +    L  L+ L++  N   
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.6 bits (129), Expect = 9e-08
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 65  TCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSE 124
           TC   ++  + +S   L+      L  L+    L +S N LK      L P L  + +S 
Sbjct: 427 TCIPQTLEVLDVSNNNLD-SFSLFLPRLQ---ELYISRNKLKTLPDASLFPVLLVMKISR 482

Query: 125 NQFSGTVPYSISQMSELKYLNLGSNQLN 152
           NQ          +++ L+ + L +N  +
Sbjct: 483 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 19/176 (10%), Positives = 60/176 (34%), Gaps = 22/176 (12%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQ 126
           +S+ E+++  L L       L +++ + +L +  +     +        ++++L+L +  
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207

Query: 127 FSGTVPYSISQMSELKYLNLGSNQLN-------GQLSDMFQKNEKLETLDLSKNQLTGEL 179
            +      +        +   + + +        +L  + +   +L  ++     L G  
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267

Query: 180 PR-----------SFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFS 222
                              ++++L++        +  V   L  +  + VEN+K  
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.8 bits (244), Expect = 8e-23
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 11/166 (6%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLG 147
           +L    S+  L  +NNN+   +        K++ L+ N+ +          S ++YL+L 
Sbjct: 94  ELLVGPSIETLHAANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 148 SNQLNG-QLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVL 206
            N+++    +++   ++ LE L+L  N +  ++       + LK L L +N+        
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLAFMGPEF 210

Query: 207 GKLP-LDELNVENNKFSGWVPEELKDIAKT-----GGNSWSSSPAP 246
                +  +++ NNK    + + L+           GN +      
Sbjct: 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 89.3 bits (222), Expect = 8e-20
 Identities = 24/138 (17%), Positives = 54/138 (39%), Gaps = 11/138 (7%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLG 147
            L     +  L++S+N L +++  +    L+ LDL+ N         +     ++ L+  
Sbjct: 53  DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAA 107

Query: 148 SNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG--SINV 205
           +N ++       Q     + + L+ N++T          S ++ L L+ N+        +
Sbjct: 108 NNNISRVSCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 206 LGKLP-LDELNVENNKFS 222
                 L+ LN++ N   
Sbjct: 165 AASSDTLEHLNLQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.5 bits (220), Expect = 1e-19
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 10/134 (7%)

Query: 91  NLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           N        V++++LK ++        N+K LDLS N  S      ++  ++L+ LNL S
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
           N L  +  D  +    L TLDL+ N +            S++ L+  NN  +  ++    
Sbjct: 68  NVLY-ETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSRG 119

Query: 209 LPLDELNVENNKFS 222
                + + NNK +
Sbjct: 120 QGKKNIYLANNKIT 133

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.0 bits (216), Expect = 4e-19
 Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 14/158 (8%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQ 126
           +     K++   L   L     +  +V  LD+S N L       L     L+ L+LS N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 127 FSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASL 186
                   +  +S L+ L+L +N +             +ETL  + N ++  +  S    
Sbjct: 70  LY-ETL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCS--RG 119

Query: 187 SSLKKLYLQNNQFTG-SINVLGKLP-LDELNVENNKFS 222
              K +YL NN+ T       G    +  L+++ N+  
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 23/133 (17%), Positives = 54/133 (40%), Gaps = 6/133 (4%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLP-PNLKHLDLSENQFSGTVPYSISQMSELKYLNLG 147
             +  ++ +L++  N +   +  Q+    LK LDLS N+ +  +       + + +++L 
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 148 SNQLNGQLSDMFQKNEKLETLDLSKNQLT-GELPRSFASLSSLKKLYLQNNQFTGSINVL 206
           +N+L   +    + ++ LE  DL  N    G L   F+    ++ +  Q  +   +    
Sbjct: 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL-TGQNE 280

Query: 207 GKLPLDELNVENN 219
            +  +  L     
Sbjct: 281 EECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 135 ISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYL 194
               +  K   +  + L   L+ + Q    ++ LDLS N L+       A  + L+ L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 195 QNNQFTGSINVLGKLP-LDELNVENNKFS 222
            +N        L  L  L  L++ NN   
Sbjct: 66  SSNVLY-ETLDLESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.8 bits (143), Expect = 9e-10
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 155 LSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG-SINVLGKLP-LD 212
           + ++ Q   + +   ++ + L   L     S  ++K+L L  N  +  S   L     L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 213 ELNVENNKFS 222
            LN+ +N   
Sbjct: 62  LLNLSSNVLY 71

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.8 bits (239), Expect = 5e-22
 Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 10/140 (7%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
              +K +SY+ +++ N+  +IP  LPP+L  L L  N+ +     S+  ++ L  L L  
Sbjct: 167 FQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQ--------FT 200
           N ++   +        L  L L+ N+L  ++P   A    ++ +YL NN         F 
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284

Query: 201 GSINVLGKLPLDELNVENNK 220
                  K     +++ +N 
Sbjct: 285 PPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.6 bits (228), Expect = 1e-20
 Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 10/139 (7%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
              L  +  L +S N LK  +P ++P  L+ L + EN+ +       + ++++  + LG+
Sbjct: 96  FAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154

Query: 149 NQLNGQL--SDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI--N 204
           N L      +  FQ  +KL  + ++   +T  +P+      SL +L+L  N+ T  +   
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKIT-KVDAA 210

Query: 205 VLGKLP-LDELNVENNKFS 222
            L  L  L +L +  N  S
Sbjct: 211 SLKGLNNLAKLGLSFNSIS 229

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 8/132 (6%)

Query: 94  SVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNG 153
            +  +  S+  L+  +P  LPP+   LDL  N+ +         +  L  L L +N+++ 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 154 QLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI--NVLGKLP- 210
                F    KLE L LSKNQL  ELP       +L++L +  N+ T  +  +V   L  
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQ 146

Query: 211 LDELNVENNKFS 222
           +  + +  N   
Sbjct: 147 MIVVELGTNPLK 158

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 71.6 bits (176), Expect = 8e-14
 Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 13/120 (10%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLP---PNLKHLDLSENQFSGTVPYSISQMSELKYLN 145
           L  L +++ L +S N++  ++        P+L+ L L+ N+    VP  ++    ++ + 
Sbjct: 212 LKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 269

Query: 146 LGSNQLNG------QLSDMFQKNEKLETLDLSKNQLT-GELPRS-FASLSSLKKLYLQNN 197
           L +N ++              K      + L  N +   E+  S F  +     + L N 
Sbjct: 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.8 bits (239), Expect = 5e-22
 Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 16/176 (9%)

Query: 66  CSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLS 123
            +      ++L  + L  Q   Q   L  + ++ +    L   +P  +     L+ L L+
Sbjct: 78  ATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLA 135

Query: 124 ENQFSGTVPYSISQMSELKYLNL-GSNQL--------NGQLSDMFQKNEKLETLDLSKNQ 174
            N     +P SI+ ++ L+ L++    +L        +   S   Q    L++L L    
Sbjct: 136 RNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG 194

Query: 175 LTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVPEEL 229
           +   LP S A+L +LK L ++N+  +     +  LP L+EL++         P   
Sbjct: 195 IR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF 249

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.0 bits (224), Expect = 5e-20
 Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 20/156 (12%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIP-----YQLPP------NLKHLDLSENQFSGTVPYSIS 136
            L  L+    L +        +P                NL+ L L       ++P SI+
Sbjct: 148 SLNRLR---ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA 203

Query: 137 QMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQN 196
            +  LK L + ++ L+  L        KLE LDL         P  F   + LK+L L++
Sbjct: 204 NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 197 -NQFTGSI-NVLGKLP-LDELNVENNKFSGWVPEEL 229
            +    ++   + +L  L++L++        +P  +
Sbjct: 263 CSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.3 bits (217), Expect = 4e-19
 Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 18/157 (11%)

Query: 87  YQLTNLKSVSYLDVSNNNLK---DSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKY 143
           ++  N  +      +   LK   D +     P    L+L         P    ++S L++
Sbjct: 50  WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQH 108

Query: 144 LNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQ-NNQFT-- 200
           + + +  L  +L D  Q+   LETL L++N L   LP S ASL+ L++L ++   + T  
Sbjct: 109 MTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL 166

Query: 201 ----GSINVLGKLP----LDELNVENNKFSGWVPEEL 229
                S +  G+      L  L +E       +P  +
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASI 202

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.0 bits (167), Expect = 1e-12
 Identities = 14/142 (9%), Positives = 38/142 (26%), Gaps = 8/142 (5%)

Query: 91  NLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQ 150
           +      L    +         L    +    ++     +  +  +  +  +        
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLS-QWQRHYNADRNRWHS-AWRQANSNNPQIETRTGRA 67

Query: 151 LNGQLSDMFQ-KNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGK 208
           L      +          L+L    L  + P     LS L+ + +        + + + +
Sbjct: 68  LKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ 125

Query: 209 LP-LDELNVENNKFSGWVPEEL 229
              L+ L +  N     +P  +
Sbjct: 126 FAGLETLTLARNPLRA-LPASI 146

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.6 bits (140), Expect = 3e-09
 Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 33/115 (28%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPY---QLPPNLKHLDLSE-NQFSGTVPYSISQMSELKY 143
            L  L+    LD+       + P         LK L L + +    T+P  I +++    
Sbjct: 227 HLPKLE---ELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLL-TLPLDIHRLT---- 277

Query: 144 LNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQ 198
                               +LE LDL        LP   A L +   + +  + 
Sbjct: 278 --------------------QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           L  L ++  L  +NN + D  P  +  NL  L L+ NQ        ++ ++ L  L+L +
Sbjct: 195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLAN 252

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
           NQ++           KL  L L  NQ++   P   A L++L  L L  NQ    I+ +  
Sbjct: 253 NQISN--LAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE-DISPISN 307

Query: 209 LP-LDELNVENNKFSG 223
           L  L  L +  N  S 
Sbjct: 308 LKNLTYLTLYFNNISD 323

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 92.3 bits (230), Expect = 3e-20
 Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 9/136 (6%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           L NL  +  + ++NN + D  P     NL  L L  NQ +   P  +  ++ L  L L S
Sbjct: 86  LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 143

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
           N ++            L+ L    NQ+T   P   A+L++L++L + +N+ +  I+VL K
Sbjct: 144 NTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVS-DISVLAK 197

Query: 209 LP-LDELNVENNKFSG 223
           L  L+ L   NN+ S 
Sbjct: 198 LTNLESLIATNNQISD 213

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 92.3 bits (230), Expect = 3e-20
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 8/139 (5%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           L NL ++  LD+S+N + D        NL+ L  + NQ S   P  +  ++ L  L+L  
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 230

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
           NQL   +         L  LDL+ NQ++   P   + L+ L +L L  NQ + +I+ L  
Sbjct: 231 NQLKD-IGT-LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISPLAG 285

Query: 209 LP-LDELNVENNKFSGWVP 226
           L  L  L +  N+     P
Sbjct: 286 LTALTNLELNENQLEDISP 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 90.4 bits (225), Expect = 1e-19
 Identities = 31/146 (21%), Positives = 61/146 (41%), Gaps = 6/146 (4%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           L  L +++ L+++ N L+D  P     NL +L L  N  S   P  +S +++L+ L   +
Sbjct: 283 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 340

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
           N+++            +  L    NQ++   P   A+L+ + +L L +  +T +      
Sbjct: 341 NKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKA 396

Query: 209 LPLDELNVENNKFSGWVPEELKDIAK 234
                  V+N   +   P  + D   
Sbjct: 397 NVSIPNTVKNVTGALIAPATISDGGS 422

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 89.6 bits (223), Expect = 2e-19
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 8/133 (6%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
            T+L  V+ L      +K     +   NL  ++ S NQ +   P  +  +++L  + + +
Sbjct: 42  QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNN 99

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
           NQ+             L  L L  NQ+T   P    +L++L +L L +N  +  I+ L  
Sbjct: 100 NQIAD--ITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISALSG 154

Query: 209 LP-LDELNVENNK 220
           L  L +L+  N  
Sbjct: 155 LTSLQQLSFGNQV 167

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 88.9 bits (221), Expect = 4e-19
 Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 8/136 (5%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
            T L       +   N+ D++       +  L              +  ++ L  +N  +
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 77

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
           NQL   ++   +   KL  + ++ NQ+    P   A+L++L  L L NNQ T  I+ L  
Sbjct: 78  NQLTD-ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT-DIDPLKN 132

Query: 209 LP-LDELNVENNKFSG 223
           L  L+ L + +N  S 
Sbjct: 133 LTNLNRLELSSNTISD 148

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 4/131 (3%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           ++NLK+++YL +  NN+ D  P      L+ L    N+ S     S++ ++ + +L+ G 
Sbjct: 305 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGH 362

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
           NQ++           ++  L L+    T       A++S    +            +   
Sbjct: 363 NQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDG 420

Query: 209 LPLDELNVENN 219
               E ++  N
Sbjct: 421 GSYTEPDITWN 431

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.5 bits (189), Expect = 3e-15
 Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 101 SNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQ 160
            +  +                L +   + TV    + + ++  L      +   +    +
Sbjct: 10  QDTPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-IDG-VE 65

Query: 161 KNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENN 219
               L  ++ S NQLT   P    +L+ L  + + NNQ    I  L  L  L  L + NN
Sbjct: 66  YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLFNN 122

Query: 220 KFSG 223
           + + 
Sbjct: 123 QITD 126

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 16/117 (13%), Positives = 41/117 (35%), Gaps = 5/117 (4%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           L NL ++++L   +N + D  P      +  L L++  ++      ++  + +   N   
Sbjct: 349 LANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNA---PVNYKANVSIPNTVK 405

Query: 149 NQLNGQLSDM-FQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSIN 204
           N     ++             D++ N  +        + S    +      F+G++ 
Sbjct: 406 NVTGALIAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.5 bits (233), Expect = 3e-21
 Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 10/139 (7%)

Query: 94  SVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNG 153
            ++YL +S   L   IP  LP  L  L L  N+        + + S+L  L LG NQ+  
Sbjct: 173 KLNYLRISEAKLT-GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231

Query: 154 QLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQ--------FTGSINV 205
             +        L  L L  N+L+  +P     L  L+ +YL  N         F      
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290

Query: 206 LGKLPLDELNVENNKFSGW 224
           + +   + +++ NN    W
Sbjct: 291 VKRAYYNGISLFNNPVPYW 309

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 7/135 (5%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
            + L+ +  L +S N+L   IP  LP +L  L + +N+         S +  +  + +G 
Sbjct: 98  FSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156

Query: 149 NQL-NGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG-SINVL 206
           N L N           KL  L +S+ +LT  +P+      +L +L+L +N+     +  L
Sbjct: 157 NPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKD--LPETLNELHLDHNKIQAIELEDL 213

Query: 207 GKLP-LDELNVENNK 220
            +   L  L + +N+
Sbjct: 214 LRYSKLYRLGLGHNQ 228

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.5 bits (207), Expect = 8e-18
 Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 6/129 (4%)

Query: 94  SVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNG 153
            +  +  S+  LK ++P ++ P+   LDL  N  S         +  L  L L +N+++ 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 154 QLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG-SINVLGKLP-L 211
                F    KL+ L +SKN L  E+P +    SSL +L + +N+       V   L  +
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLV-EIPPN--LPSSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 212 DELNVENNK 220
           + + +  N 
Sbjct: 150 NCIEMGGNP 158

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.8 bits (200), Expect = 6e-17
 Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 9/142 (6%)

Query: 93  KSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQ 150
              + LD+ NN++ +          +L  L L  N+ S     + S + +L+ L +  N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 151 LNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI---NVLG 207
           L     ++      L  L +  N++       F+ L ++  + +  N    S        
Sbjct: 114 LVEIPPNLPS---SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 208 KLPLDELNVENNKFSGWVPEEL 229
            L L+ L +   K +G +P++L
Sbjct: 171 GLKLNYLRISEAKLTG-IPKDL 191

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 13/141 (9%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPP------NLKHLDLSENQFSGTVPYSISQMSELK 142
            + L++++ +++  N L++S      P       L +L +SE + +  +P  +     L 
Sbjct: 143 FSGLRNMNCIEMGGNPLENSG---FEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLN 196

Query: 143 YLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGS 202
            L+L  N++     +   +  KL  L L  NQ+      S + L +L++L+L NN+ +  
Sbjct: 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV 256

Query: 203 INVLGKLP-LDELNVENNKFS 222
              L  L  L  + +  N  +
Sbjct: 257 PAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.4 bits (178), Expect = 4e-14
 Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 15/122 (12%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIP----YQLPPNLKHLDLSENQFSGTVPYSISQMSELKYL 144
           L     +  L + +N ++  I       LP  L+ L L  N+ S  VP  +  +  L+ +
Sbjct: 213 LLRYSKLYRLGLGHNQIR-MIENGSLSFLP-TLRELHLDNNKLS-RVPAGLPDLKLLQVV 269

Query: 145 NLGSNQL----NGQLSDM--FQKNEKLETLDLSKNQLTGEL--PRSFASLSSLKKLYLQN 196
            L +N +          +    K      + L  N +      P +F  ++    +   N
Sbjct: 270 YLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

Query: 197 NQ 198
            +
Sbjct: 330 YK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 15/142 (10%)

Query: 92  LKSVSYLDVSNNNLKDSIPYQL---PPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
            ++++ L + +N ++ +I  +       L  L L  NQ       S+S +  L+ L+L +
Sbjct: 192 PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASL------SSLKKLYLQNNQFTGS 202
           N+L+ ++       + L+ + L  N +T      F  +      +    + L NN     
Sbjct: 251 NKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309

Query: 203 I---NVLGKLP-LDELNVENNK 220
                    +     +   N K
Sbjct: 310 EVQPATFRCVTDRLAIQFGNYK 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 94.0 bits (234), Expect = 5e-21
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 3/131 (2%)

Query: 92  LKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQL 151
              ++ L + +NNL D+      P L  +DLS N+    + +   +M  L+ L + +N+L
Sbjct: 225 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284

Query: 152 NGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPL 211
              L+   Q    L+ LDLS N L   + R+      L+ LYL +N    ++ +     L
Sbjct: 285 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTL 341

Query: 212 DELNVENNKFS 222
             L + +N + 
Sbjct: 342 KNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 93.6 bits (233), Expect = 6e-21
 Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 5/149 (3%)

Query: 75  KLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYS 134
            L    ++  L   L    +V  LD S+N++   +   +   L  L L  N  +      
Sbjct: 187 SLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLT-DTA-W 243

Query: 135 ISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYL 194
           +     L  ++L  N+L   +   F K ++LE L +S N+L   L      + +LK L L
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302

Query: 195 QNNQFTGSINVLGKLP-LDELNVENNKFS 222
            +N          +   L+ L +++N   
Sbjct: 303 SHNHLLHVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 90.9 bits (226), Expect = 6e-20
 Identities = 30/156 (19%), Positives = 63/156 (40%), Gaps = 8/156 (5%)

Query: 73  EIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP---PNLKHLDLSENQFSG 129
           ++ +     +   G++   L +   +   N+ ++  +P  L      ++ L+L++ Q   
Sbjct: 25  DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEE 83

Query: 130 TVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRS-FASLSS 188
              Y+ +    ++ L +G N +      +FQ    L  L L +N L+  LPR  F +   
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPK 142

Query: 189 LKKLYLQNNQFTG-SINVLGKLP-LDELNVENNKFS 222
           L  L + NN       +       L  L + +N+ +
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 11/135 (8%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLG 147
            L+ + S+ + +VS N L  ++    P  ++ LD S N  +  V   ++   EL  L L 
Sbjct: 181 DLSLIPSLFHANVSYNLLS-TLAI--PIAVEELDASHNSIN-VVRGPVNV--ELTILKLQ 234

Query: 148 SNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSIN-VL 206
            N L    +        L  +DLS N+L   +   F  +  L++LY+ NN+   ++N   
Sbjct: 235 HNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG 291

Query: 207 GKLP-LDELNVENNK 220
             +P L  L++ +N 
Sbjct: 292 QPIPTLKVLDLSHNH 306

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 81.6 bits (202), Expect = 6e-17
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 10/137 (7%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLP---PNLKHLDLSENQFSGTVPYSISQMSELKYLN 145
                ++  L +  N ++  +P  +    P L  L L  N  S           +L  L+
Sbjct: 89  FAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147

Query: 146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINV 205
           + +N L     D FQ    L+ L LS N+LT  +    + + SL    +  N  + ++ +
Sbjct: 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-TLAI 203

Query: 206 LGKLPLDELNVENNKFS 222
                ++EL+  +N  +
Sbjct: 204 PIA--VEELDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 4/119 (3%)

Query: 108 SIPYQLPPN--LKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKL 165
            I   L  +     + +          +    ++  K +   ++ +    + +     ++
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 166 ETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG-SINVLGKLP-LDELNVENNKFS 222
           E L+L+  Q+      +FA   +++KLY+  N       +V   +P L  L +E N  S
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 95.0 bits (236), Expect = 7e-21
 Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 5/149 (3%)

Query: 75  KLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYS 134
            L    ++  L   L    +V  LD S+N++   +   +   L  L L  N  +      
Sbjct: 193 SLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLT-DTA-W 249

Query: 135 ISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYL 194
           +     L  ++L  N+L   +   F K ++LE L +S N+L   L      + +LK L L
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 308

Query: 195 QNNQFTGSINVLGKLP-LDELNVENNKFS 222
            +N          +   L+ L +++N   
Sbjct: 309 SHNHLLHVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 93.1 bits (231), Expect = 3e-20
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 3/131 (2%)

Query: 92  LKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQL 151
              ++ L + +NNL D+      P L  +DLS N+    + +   +M  L+ L + +N+L
Sbjct: 231 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290

Query: 152 NGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPL 211
              L+   Q    L+ LDLS N L   + R+      L+ LYL +N    ++ +     L
Sbjct: 291 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTL 347

Query: 212 DELNVENNKFS 222
             L + +N + 
Sbjct: 348 KNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 90.4 bits (224), Expect = 2e-19
 Identities = 30/156 (19%), Positives = 63/156 (40%), Gaps = 8/156 (5%)

Query: 73  EIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP---PNLKHLDLSENQFSG 129
           ++ +     +   G++   L +   +   N+ ++  +P  L      ++ L+L++ Q   
Sbjct: 31  DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEE 89

Query: 130 TVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRS-FASLSS 188
              Y+ +    ++ L +G N +      +FQ    L  L L +N L+  LPR  F +   
Sbjct: 90  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPK 148

Query: 189 LKKLYLQNNQFTG-SINVLGKLP-LDELNVENNKFS 222
           L  L + NN       +       L  L + +N+ +
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 81.9 bits (202), Expect = 1e-16
 Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 27/161 (16%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
                S+  L +S+N L   +   L P+L H ++S N  S     +++    ++ L+   
Sbjct: 167 FQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASH 220

Query: 149 NQLNG-----------------QLSDM--FQKNEKLETLDLSKNQLTGELPRSFASLSSL 189
           N +N                   L+D         L  +DLS N+L   +   F  +  L
Sbjct: 221 NSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280

Query: 190 KKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVPEEL 229
           ++LY+ NN+          +P L  L++ +N     V    
Sbjct: 281 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 320

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.1 bits (174), Expect = 3e-13
 Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 25/154 (16%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLP---PNLKHLDLSENQFSGTVPYSISQMSELKYLN 145
             N+  ++ L +  N+L  S+P  +    P L  L +S N        +    + L+ L 
Sbjct: 119 FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177

Query: 146 LGSNQLN----GQLSDM------------FQKNEKLETLDLSKNQLTGELPRSFASLSSL 189
           L SN+L       +  +                  +E LD S N +   +         L
Sbjct: 178 LSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPV--NVEL 234

Query: 190 KKLYLQNNQFTGSINVLGKLP-LDELNVENNKFS 222
             L LQ+N  T     L   P L E+++  N+  
Sbjct: 235 TILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELE 267

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 65.7 bits (160), Expect = 1e-11
 Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 4/119 (3%)

Query: 108 SIPYQLPPNLKHLDLSENQFSGTVPYSISQ--MSELKYLNLGSNQLNGQLSDMFQKNEKL 165
            I   L  +    D+  +  +  V +      ++  K +   ++ +    + +     ++
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 166 ETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG-SINVLGKLP-LDELNVENNKFS 222
           E L+L+  Q+      +FA   +++KLY+  N       +V   +P L  L +E N  S
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 13/101 (12%), Positives = 28/101 (27%), Gaps = 8/101 (7%)

Query: 130 TVPYSISQMSELKYLN-LGSNQLNGQLSDMFQKNE-----KLETLDLSKNQLTGELPRSF 183
             P      S L+Y        ++ Q  D++   E       + +    + +        
Sbjct: 12  RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 71

Query: 184 ASLSSLKKLYLQNNQFTG-SINVLGKLP-LDELNVENNKFS 222
            S   ++ L L + Q              + +L +  N   
Sbjct: 72  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 94.5 bits (235), Expect = 8e-21
 Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 7/138 (5%)

Query: 98  LDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSD 157
           +D S N L   +P  L      L++S+N  S      I  +S+L+ L +  N++      
Sbjct: 5   VDRSKNGLI-HVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS 63

Query: 158 MFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT--GSINVLGKLP-LDEL 214
           +F+ N++LE LDLS N+L  ++        +LK L L  N F         G +  L  L
Sbjct: 64  VFKFNQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120

Query: 215 NVENNKFSGWVPEELKDI 232
            +            +  +
Sbjct: 121 GLSTTHLEKSSVLPIAHL 138

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.0 bits (205), Expect = 3e-17
 Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 17/143 (11%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQ-----LPPNLKHLDLSENQFSGTVPYSI-SQMSEL 141
            LT L+    L +  N LK  +           +L+ LD+S+N  S        S    L
Sbjct: 346 HLTELE---TLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 142 KYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG 201
             LN+ SN L   +         ++ LDL  N++   +P+    L +L++L + +NQ   
Sbjct: 402 LSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK- 457

Query: 202 SI--NVLGKLP-LDELNVENNKF 221
           S+   +  +L  L ++ +  N +
Sbjct: 458 SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.0 bits (192), Expect = 2e-15
 Identities = 30/155 (19%), Positives = 51/155 (32%), Gaps = 11/155 (7%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQLPP-------NLKHLDLSENQFSGTVPYSISQMSE 140
           QL    +V Y  +SN  L+  + ++           L    +  + F     Y     S 
Sbjct: 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN 301

Query: 141 LKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT 200
           +   N   +           K      LD S N LT  +  +   L+ L+ L LQ NQ  
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

Query: 201 ---GSINVLGKLP-LDELNVENNKFSGWVPEELKD 231
                  +  ++  L +L++  N  S    +    
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 42/163 (25%), Positives = 63/163 (38%), Gaps = 10/163 (6%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQF-SGTVPYSISQMSELKYLNL 146
               L+   YLD+S+N L   I      NLKHLDLS N F +  +      MS+LK+L L
Sbjct: 67  FNQELE---YLDLSHNKLV-KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122

Query: 147 GSNQL-NGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASL--SSLKKLYLQNNQFTGSI 203
            +  L    +  +   N     L L +     E P         SL  ++  N +F   +
Sbjct: 123 STTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFIL 182

Query: 204 N--VLGKLPLDELNVENNKFSGWVPEELKDIAKTGGNSWSSSP 244
           +  V     L+  N++           L  +AK   N   S+ 
Sbjct: 183 DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 28/211 (13%), Positives = 64/211 (30%), Gaps = 10/211 (4%)

Query: 22  LSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSGLGL 81
           L K+     + LN+    L         +   G              ++     +  + +
Sbjct: 127 LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186

Query: 82  NGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQM--- 138
                 +L+N+K V   +  +  L      Q  P L +L L+  + +      I Q+   
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246

Query: 139 SELKYLNLGSNQLNGQ-----LSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLY 193
           + + Y ++ + +L GQ             + L    +  +         +   S++    
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 194 LQNNQFTG-SINVLGKLP-LDELNVENNKFS 222
              +      +    K+     L+  NN  +
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 21/147 (14%), Positives = 41/147 (27%), Gaps = 8/147 (5%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           + +L     L V      +    +   +     L     +    + I  +S     NL  
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
           + +   L D            L  N     L        +L  +    N F   + ++  
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNL--------TLNNIETTWNSFIRILQLVWH 246

Query: 209 LPLDELNVENNKFSGWVPEELKDIAKT 235
             +   ++ N K  G +     D + T
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGT 273

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 91.2 bits (227), Expect = 1e-20
 Identities = 37/141 (26%), Positives = 55/141 (39%), Gaps = 9/141 (6%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIP----YQLPPNLKHLDLSENQFSGTVPYSISQMSELKYL 144
            T L  +  LD+S+N    S+     + L   L  L L         P     ++ L+YL
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGL-GRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 145 NLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI- 203
            L  N L     D F+    L  L L  N+++    R+F  L SL +L L  N+    + 
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVH 193

Query: 204 -NVLGKLP-LDELNVENNKFS 222
            +    L  L  L +  N  S
Sbjct: 194 PHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.5 bits (207), Expect = 4e-18
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 4/114 (3%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQL---PPNLKHLDLSENQFSGTVPYSISQMSELKYLN 145
              L ++ YL + +N L+ ++P        NL HL L  N+ S     +   +  L  L 
Sbjct: 125 FRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
           L  N++       F+   +L TL L  N L+     + A L +L+ L L +N +
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.5 bits (207), Expect = 4e-18
 Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 14/152 (9%)

Query: 79  LGLNGQLGY----QLTNLKSVSYLDVSNNNLKDSIPYQLP---PNLKHLDLSENQFSGTV 131
           L  N QL          L  +  L +    L+  +   L      L++L L +N     +
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-AL 144

Query: 132 PYSI-SQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLK 190
           P      +  L +L L  N+++      F+    L+ L L +N++    P +F  L  L 
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 191 KLYLQNNQFTGSI--NVLGKLP-LDELNVENN 219
            LYL  N  + ++    L  L  L  L + +N
Sbjct: 205 TLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.3 bits (204), Expect = 1e-17
 Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 13/163 (7%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIP----YQLPPNLKHLDLSE 124
           ++   I L G  ++          ++++ L + +N L   I       L   L+ LDLS+
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGL-ALLEQLDLSD 89

Query: 125 NQFSGTVPYSI-SQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELP-RS 182
           N    +V  +    +  L  L+L    L      +F+    L+ L L  N L   LP  +
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148

Query: 183 FASLSSLKKLYLQNNQFTGSI--NVLGKLP-LDELNVENNKFS 222
           F  L +L  L+L  N+ + S+       L  LD L +  N+ +
Sbjct: 149 FRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 6/112 (5%)

Query: 114 PPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKN 173
                     +      VP  I   +  + + L  N+++   +  F+    L  L L  N
Sbjct: 10  NEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN 66

Query: 174 QLTGELPRSFASLSSLKKLYLQNNQFTGSI--NVLGKLP-LDELNVENNKFS 222
            L      +F  L+ L++L L +N    S+       L  L  L+++     
Sbjct: 67  VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.2 bits (227), Expect = 1e-20
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 7/134 (5%)

Query: 94  SVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNG 153
           S + +  ++  L  S+P  +P +   L+L  N+          ++++L  L+L SN L+ 
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 154 Q--LSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT--GSINVLGKL 209
           +   S        L+ LDLS N +   +  +F  L  L+ L  Q++        +V   L
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 210 P-LDELNVENNKFS 222
             L  L++ +    
Sbjct: 126 RNLIYLDISHTHTR 139

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.8 bits (218), Expect = 2e-19
 Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 12/155 (7%)

Query: 75  KLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVP 132
            LS  G   Q  +  T+LK   YLD+S N +  ++         L+HLD   +       
Sbjct: 63  GLSFKGCCSQSDFGTTSLK---YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE 118

Query: 133 YSI-SQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQ-LTGELPRSFASLSSLK 190
           +S+   +  L YL++         + +F     LE L ++ N      LP  F  L +L 
Sbjct: 119 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178

Query: 191 KLYLQNNQFTGSI--NVLGKLP-LDELNVENNKFS 222
            L L   Q    +       L  L  LN+ +N F 
Sbjct: 179 FLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.4 bits (217), Expect = 2e-19
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 11/143 (7%)

Query: 89  LTNLKSVSYLDVSNNNLKD-SIPYQL---PPNLKHLDLSENQFSGTVPYSISQMSELKYL 144
              L  ++ L +S+N L       Q      +LK+LDLS N    T+  +   + +L++L
Sbjct: 48  FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106

Query: 145 NLGSNQLNGQLSD--MFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGS 202
           +   + L  Q+S+  +F     L  LD+S           F  LSSL+ L +  N F  +
Sbjct: 107 DFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165

Query: 203 I--NVLGKLP-LDELNVENNKFS 222
              ++  +L  L  L++   +  
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.4 bits (212), Expect = 1e-18
 Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 11/141 (7%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQL---PPNLKHLDLSENQFSGTVPYSI-SQMSELKYL 144
           L NL    YLD+S+ + +      +     +L+ L ++ N F       I +++  L +L
Sbjct: 125 LRNLI---YLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 145 NLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG-SI 203
           +L   QL       F     L+ L++S N         +  L+SL+ L    N       
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240

Query: 204 NVLGKLP--LDELNVENNKFS 222
             L   P  L  LN+  N F+
Sbjct: 241 QELQHFPSSLAFLNLTQNDFA 261

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 94.5 bits (235), Expect = 1e-20
 Identities = 46/248 (18%), Positives = 79/248 (31%), Gaps = 21/248 (8%)

Query: 70  SVTEIKLSGLGLNG-QLGYQLTNLKSVSYLDVSNNNLKDSIP---YQLPPNLKHLDLSEN 125
           +   I LS   L    + Y L  +  +  L ++ N              P+L+ L L EN
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 126 QFSGTVPYSI-----SQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELP 180
                    +       +S L+ L L  N LN     +F     L  L L+ N+LT    
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521

Query: 181 RSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFS-----GWVPEELKDIAKT 235
                 ++L+ L +  NQ   + N    + L  L++ +NKF            L     T
Sbjct: 522 NDL--PANLEILDISRNQLL-APNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVT 578

Query: 236 -GGNSWSSSPAPPPPPGTKPVTKRKASPFREGDESSSSKIWQWVIIAIAVLLALAIIAIV 294
             G         P       +           DE    K  ++ +  +  +     +  +
Sbjct: 579 IAGPPADIYCVYPDSFSGVSLFSLSTEGC---DEEEVLKSLKFSLFIVCTVTLTLFLMTI 635

Query: 295 IALFSRRR 302
           + +   R 
Sbjct: 636 LTVTKFRG 643

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 93.7 bits (233), Expect = 2e-20
 Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 10/151 (6%)

Query: 91  NLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTV-PYSISQMSELKYLNLG 147
            L +   L +S N ++       P    L+ L+L       T+   +   +  L+ L+LG
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 148 SNQLNGQLSDMFQKNEKLETLDLSKNQLTGEL--PRSFASLSSLKKLYLQNNQFTGSIN- 204
           S+++     D FQ    L  L L    L+  +     F +L +L +L L  NQ   S+  
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR-SLYL 140

Query: 205 --VLGKLP-LDELNVENNKFSGWVPEELKDI 232
               GKL  L  ++  +N+       EL+ +
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 93.3 bits (232), Expect = 3e-20
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 7/132 (5%)

Query: 96  SYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQL 155
                   NL   +P Q+    + L LS N        S   + +L+ L LGS      +
Sbjct: 7   RIAFYRFCNL-TQVP-QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 156 -SDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI---NVLGKLP- 210
             + F+    L  LDL  +++    P +F  L  L +L L     + ++        L  
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

Query: 211 LDELNVENNKFS 222
           L  L++  N+  
Sbjct: 125 LTRLDLSKNQIR 136

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 92.2 bits (229), Expect = 7e-20
 Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 12/145 (8%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIP----YQLPPNLKHLDLSENQFSGTVPYSISQMSELKYL 144
              L+ +  L++ +     +I       L PNL+ LDL  ++     P +   +  L  L
Sbjct: 44  FPFLEQLQLLELGSQYTPLTIDKEAFRNL-PNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102

Query: 145 NLGSNQLNGQL--SDMFQKNEKLETLDLSKNQLTG-ELPRSFASLSSLKKLYLQNNQFT- 200
            L    L+  +     F+  + L  LDLSKNQ+    L  SF  L+SLK +   +NQ   
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162

Query: 201 ---GSINVLGKLPLDELNVENNKFS 222
                +  L    L   ++  N   
Sbjct: 163 VCEHELEPLQGKTLSFFSLAANSLY 187

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 91.4 bits (227), Expect = 1e-19
 Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 6/159 (3%)

Query: 70  SVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPP----NLKHLDLSEN 125
           +V         ++    + L     +       +N+KD            +++HLDLS  
Sbjct: 217 TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG 276

Query: 126 QFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFAS 185
                       + +LK LNL  N++N    + F   + L+ L+LS N L      +F  
Sbjct: 277 FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336

Query: 186 LSSLKKLYLQNNQFTG-SINVLGKLP-LDELNVENNKFS 222
           L  +  + LQ N            L  L  L++ +N  +
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 85.2 bits (211), Expect = 1e-17
 Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 17/170 (10%)

Query: 88  QLTNLKSVS----YLDVSNNNLKD----SIPYQLPPNLKHLDLSENQFSGTVP-YSISQM 138
           +L  L  ++     + +S N L++        ++P +L+ L L++N+FS      + S+ 
Sbjct: 392 KLVTLPKINLTANLIHLSENRLENLDILYFLLRVP-HLQILILNQNRFSSCSGDQTPSEN 450

Query: 139 SELKYLNLGSNQLNGQ-----LSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLY 193
             L+ L LG N L          D+F+    L+ L L+ N L    P  F+ L++L+ L 
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510

Query: 194 LQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDIAKT--GGNSWS 241
           L +N+ T   +      L+ L++  N+     P+    ++      N + 
Sbjct: 511 LNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 84.1 bits (208), Expect = 3e-17
 Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 17/150 (11%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQL---PPNLKHLDLSENQFSGTV--PYSISQMSELKY 143
             NL ++  LD+ ++ +   +         +L  L L     S  V        +  L  
Sbjct: 69  FRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127

Query: 144 LNLGSNQLNG-QLSDMFQKNEKLETLDLSKNQLTGELPRSFASLS--SLKKLYLQNNQ-- 198
           L+L  NQ+    L   F K   L+++D S NQ+          L   +L    L  N   
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187

Query: 199 ------FTGSINVLGKLPLDELNVENNKFS 222
                 +   +N    + L+ L+V  N ++
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 80.6 bits (199), Expect = 3e-16
 Identities = 41/180 (22%), Positives = 66/180 (36%), Gaps = 26/180 (14%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKD-----SIPY------------ 111
             V  I L    +          L+ +  LD+ +N L       SIP             
Sbjct: 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP 397

Query: 112 QLPPNLKHLDLSENQFSG-TVPYSISQMSELKYLNLGSNQLNGQLSDM-FQKNEKLETLD 169
           ++      + LSEN+     + Y + ++  L+ L L  N+ +    D    +N  LE L 
Sbjct: 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457

Query: 170 LSKNQLTGE-----LPRSFASLSSLKKLYLQNNQFTG-SINVLGKLP-LDELNVENNKFS 222
           L +N L            F  LS L+ LYL +N        V   L  L  L++ +N+ +
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFS 128
           S +  + L+   LN       ++L ++  L +++N L       LP NL+ LD+S NQ  
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLL 539

Query: 129 GTVPYSISQMSELKYLNLGSNQLN 152
              P        L  L++  N+  
Sbjct: 540 APNPDVFVS---LSVLDITHNKFI 560

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 90.7 bits (225), Expect = 3e-20
 Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 15/169 (8%)

Query: 66  CSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNN------NLKDSIPYQLPPNLKH 119
                +  + ++          Q+    ++S LD+S+N       L  ++     P L+ 
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205

Query: 120 LDLSENQF---SGTVPYSISQMSELKYLNLGSNQLNGQLSDM-FQKNEKLETLDLSKNQL 175
           L L        SG      +   +L+ L+L  N L             +L +L+LS   L
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

Query: 176 TGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSG 223
             ++P+     + L  L L  N+         +LP +  L+++ N F  
Sbjct: 266 K-QVPKG--LPAKLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.4 bits (167), Expect = 7e-13
 Identities = 35/185 (18%), Positives = 59/185 (31%), Gaps = 28/185 (15%)

Query: 66  CSGSSVTEIKLSGLGLNGQLGYQLTNLK-----------SVSYLDVSNNNLKDSIPYQLP 114
           C G++  E+   G  L   L    T              S+  L V    +   I +   
Sbjct: 30  CLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGAL 89

Query: 115 -----PNLKHLDLSENQFSGTVPYSISQ--MSELKYLNLGSNQLNGQ---LSDMFQ-KNE 163
                  L+ L L   + +GT P  + +    +L  LNL +     +   L+++ Q    
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 164 KLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSIN-----VLGKLP-LDELNVE 217
            L+ L +++               +L  L L +N   G           K P L  L + 
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 218 NNKFS 222
           N    
Sbjct: 210 NAGME 214

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 92.3 bits (229), Expect = 5e-20
 Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 30/169 (17%)

Query: 66  CSGSSVTEIKLSGLGLNGQLGYQLTNL-----KSVSYLDVSNNNLKDSIPYQLPPNLKHL 120
           C  +    + +            LT L       ++ L + +NNL  S+P  LPP L+ L
Sbjct: 37  CLNNGNAVLNVGES--------GLTTLPDCLPAHITTLVIPDNNLT-SLP-ALPPELRTL 86

Query: 121 DLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELP 180
           ++S NQ + ++P     + EL   +     L    S        L  L +  NQLT  LP
Sbjct: 87  EVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT-SLP 137

Query: 181 RSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEEL 229
                   L++L + +NQ      +  +  L +L   NN+ +  +P   
Sbjct: 138 ---VLPPGLQELSVSDNQLASLPALPSE--LCKLWAYNNQLTS-LPMLP 180

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.7 bits (225), Expect = 2e-19
 Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 35/175 (20%)

Query: 72  TEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTV 131
            E+ +    L   L    + L     L +  N L  S+P  LPP L+ L +S+NQ + ++
Sbjct: 104 LELSIFSNPLT-HLPALPSGLCK---LWIFGNQLT-SLP-VLPPGLQELSVSDNQLA-SL 156

Query: 132 PYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASL----- 186
           P   S+   L  L   +NQL   L  +      L+ L +S NQL   LP   + L     
Sbjct: 157 PALPSE---LCKLWAYNNQLT-SLPMLP---SGLQELSVSDNQLA-SLPTLPSELYKLWA 208

Query: 187 ------------SSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEEL 229
                       S LK+L +  N+ T    +  +  L EL V  N+ +  +P   
Sbjct: 209 YNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSE--LKELMVSGNRLT-SLPMLP 260

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 84.2 bits (208), Expect = 2e-17
 Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 15/117 (12%)

Query: 88  QLTNL----KSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKY 143
           QL +L      +  L   NN L  S+P  LP  LK L +S N+ + ++P   S+   LK 
Sbjct: 192 QLASLPTLPSELYKLWAYNNRLT-SLP-ALPSGLKELIVSGNRLT-SLPVLPSE---LKE 245

Query: 144 LNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT 200
           L +  N+L   L  +      L +L + +NQLT  LP S   LSS   + L+ N  +
Sbjct: 246 LMVSGNRLT-SLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 82.2 bits (203), Expect = 9e-17
 Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 21/161 (13%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFS 128
             +  +++SG  L   L      L  +S       +L       LP  L  L +  NQ +
Sbjct: 81  PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLT 134

Query: 129 GTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSS 188
            ++P        L+ L++  NQL   L  +     +L  L    NQLT  LP      S 
Sbjct: 135 -SLPVLPPG---LQELSVSDNQLA-SLPALP---SELCKLWAYNNQLT-SLP---MLPSG 182

Query: 189 LKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEEL 229
           L++L + +NQ      +  +L   +L   NN+ +  +P   
Sbjct: 183 LQELSVSDNQLASLPTLPSELY--KLWAYNNRLTS-LPALP 220

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.5 bits (175), Expect = 2e-13
 Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 24/144 (16%)

Query: 101 SNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQ 160
               +   +   L      L++ E+  + T+P  +     +  L +  N L   L  +  
Sbjct: 26  GRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALP- 80

Query: 161 KNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI----------NVLGKLP 210
              +L TL++S NQLT  LP     L  L                        N L  LP
Sbjct: 81  --PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLP 137

Query: 211 -----LDELNVENNKFSGWVPEEL 229
                L EL+V +N+ +  +P   
Sbjct: 138 VLPPGLQELSVSDNQLAS-LPALP 160

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.1 bits (174), Expect = 3e-13
 Identities = 36/162 (22%), Positives = 59/162 (36%), Gaps = 17/162 (10%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFS 128
           S + E+ +SG  L   L    + LK    L VS N L  S+P  LP  L  L +  NQ +
Sbjct: 221 SGLKELIVSGNRLT-SLPVLPSELKE---LMVSGNRLT-SLP-MLPSGLLSLSVYRNQLT 274

Query: 129 GTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLT------GELPRS 182
             +P S+  +S    +NL  N L+       Q   ++ +       +          PR 
Sbjct: 275 -RLPESLIHLSSETTVNLEGNPLS---ERTLQALREITSAPGYSGPIIRFDMAGASAPRE 330

Query: 183 FASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGW 224
             +L      +L   +  G      +  +       + FS +
Sbjct: 331 TRALHLAAADWLVPAR-EGEPAPADRWHMFGQEDNADAFSLF 371

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 91.7 bits (228), Expect = 5e-20
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 4/133 (3%)

Query: 94  SVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQL 151
               LD+  N +K     +    P+L+ L+L+EN  S   P + + +  L+ L L SN+L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 152 NGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG-SINVLGKLP 210
                 +F     L  LD+S+N++   L   F  L +LK L + +N     S      L 
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152

Query: 211 -LDELNVENNKFS 222
            L++L +E    +
Sbjct: 153 SLEQLTLEKCNLT 165

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 87.5 bits (217), Expect = 1e-18
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 6/139 (4%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNL 146
           L++L  +  L + + N+     Y       LK L++S   +  T+  +      L  L++
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231

Query: 147 GSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI--N 204
               L        +    L  L+LS N ++         L  L+++ L   Q    +   
Sbjct: 232 THCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPY 290

Query: 205 VLGKLP-LDELNVENNKFS 222
               L  L  LNV  N+ +
Sbjct: 291 AFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 84.8 bits (210), Expect = 1e-17
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 4/134 (2%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP---PNLKHLDLSEN 125
             +  +++S       +        +++ L +++ NL  ++PY        L+ L+LS N
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN 258

Query: 126 QFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFAS 185
             S      + ++  L+ + L   QL       F+    L  L++S NQLT      F S
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318

Query: 186 LSSLKKLYLQNNQF 199
           + +L+ L L +N  
Sbjct: 319 VGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 84.0 bits (208), Expect = 1e-17
 Identities = 27/139 (19%), Positives = 56/139 (40%), Gaps = 6/139 (4%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLP---PNLKHLDLSENQFSGTVPYSISQMSELKYLN 145
             +L ++  L+V +N+L   I ++      +L+ L L +   +     ++S +  L  L 
Sbjct: 124 FQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182

Query: 146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG-SIN 204
           L    +N      F++  +L+ L++S       +  +     +L  L + +   T     
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL 242

Query: 205 VLGKLP-LDELNVENNKFS 222
            +  L  L  LN+  N  S
Sbjct: 243 AVRHLVYLRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 27/127 (21%)

Query: 98  LDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSD 157
           +         ++P  +P   + LDL +N+       +++                    D
Sbjct: 16  VLCHRKRF-VAVPEGIPTETRLLDLGKNRIK-----TLN-------------------QD 50

Query: 158 MFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG-SINVLGKLP-LDELN 215
            F     LE L+L++N ++   P +F +L +L+ L L++N+     + V   L  L +L+
Sbjct: 51  EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110

Query: 216 VENNKFS 222
           +  NK  
Sbjct: 111 ISENKIV 117

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIP----YQLPPNLKHLDLSENQFSGTVPYSISQMSELKYL 144
           L  L  +  + +    L   +       L   L+ L++S NQ +         +  L+ L
Sbjct: 268 LHELLRLQEIQLVGGQLA-VVEPYAFRGLN-YLRVLNVSGNQLTTLEESVFHSVGNLETL 325

Query: 145 NLGSNQLN 152
            L SN L 
Sbjct: 326 ILDSNPLA 333

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 88.8 bits (221), Expect = 1e-19
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 11/120 (9%)

Query: 385 VKSTNAQAAPFSMADLLTATANF------ATGRLLGEGTIGRVYRAKYPDGKVLAVKKID 438
           ++ ++ +   FS  +L   T NF        G  +GEG  G VY+  Y +   +AVKK+ 
Sbjct: 5   LEVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKG-YVNNTTVAVKKLA 63

Query: 439 SSHFQRA---NSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           +           +   E ++ +++ +H N+ EL+GF S+     L+Y Y  NGSL + L 
Sbjct: 64  AMVDITTEELKQQFDQE-IKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLS 122

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.1 bits (226), Expect = 1e-19
 Identities = 45/132 (34%), Positives = 61/132 (46%), Gaps = 7/132 (5%)

Query: 94  SVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNG 153
             S +D SN NL   +P  LPP  K L LS+N  S      IS +SEL+ L L  N++  
Sbjct: 32  LESMVDYSNRNL-THVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS 90

Query: 154 QLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT--GSINVLGKLP- 210
               +F  N+ LE LD+S N+L   +      ++SL+ L L  N F         G L  
Sbjct: 91  LDFHVFLFNQDLEYLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTK 147

Query: 211 LDELNVENNKFS 222
           L  L +   KF 
Sbjct: 148 LTFLGLSAAKFR 159

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 75.3 bits (185), Expect = 1e-14
 Identities = 35/177 (19%), Positives = 68/177 (38%), Gaps = 31/177 (17%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQ--LPPNLKHLDLSENQF----SGTVPYSISQMSEL 141
            L  L+    L +  N LK +      +  N+  L+  +       S     + +    +
Sbjct: 375 TLKRLQ---TLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430

Query: 142 KYLNLGSNQLNGQLSDMFQK-NEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT 200
             LNL SN L      +F+    K++ LDL  N++   +P+    L +L++L + +NQ  
Sbjct: 431 LVLNLSSNMLT---GSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486

Query: 201 ----GSINVLGKLPLDELNVENNKF----------SGWVPEELKDIAKTGGNSWSSS 243
               G  + L    L  + + +N +          S W+ +    +  + G+    S
Sbjct: 487 SVPDGVFDRLTS--LQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDS 541

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 9/149 (6%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYS--ISQMSELKYLN 145
              +L+   YLDVS+N L+ +I      +L+HLDLS N F   +P       +++L +L 
Sbjct: 98  FNQDLE---YLDVSHNRLQ-NISCCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLG 152

Query: 146 LGSNQL-NGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLK-KLYLQNNQFTGSI 203
           L + +     L  +   +     LDL    + G    S    ++    L    N      
Sbjct: 153 LSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ 212

Query: 204 NVLGKLPLDELNVENNKFSGWVPEELKDI 232
             +    L  L + N K +    + L   
Sbjct: 213 VNMSVNALGHLQLSNIKLNDENCQRLMTF 241

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 70.3 bits (172), Expect = 4e-13
 Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 8/145 (5%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKH-------LDLSENQFSGTVPYSISQMSE 140
           Q    + V YL++ N  + + I  +     +          +    F  +     S  +E
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330

Query: 141 LKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT 200
           +    L  +                  L+ ++N  T  + +  ++L  L+ L LQ N   
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 201 GSINVLGKL-PLDELNVENNKFSGW 224
               V      +  L   +   +  
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSL 415

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 30/121 (24%)

Query: 80  GLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMS 139
               +      ++     L++S+N L  S+   LPP +K LDL  N+   ++P  ++ + 
Sbjct: 418 HAYDRTCAWAESIL---VLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQ 473

Query: 140 ELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPR-SFASLSSLKKLYLQNNQ 198
            L+ LN+ SNQL                           +P   F  L+SL+ ++L +N 
Sbjct: 474 ALQELNVASNQLK-------------------------SVPDGVFDRLTSLQYIWLHDNP 508

Query: 199 F 199
           +
Sbjct: 509 W 509

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 88.6 bits (220), Expect = 1e-19
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 8/133 (6%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
             +L  ++ L      +      Q   NL  L+L +NQ +   P  +  ++++  L L  
Sbjct: 37  QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG 94

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
           N L   +S      + ++TLDL+  Q+T   P   A LS+L+ LYL  NQ T +I+ L  
Sbjct: 95  NPLK-NVSA-IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISPLAG 149

Query: 209 LP-LDELNVENNK 220
           L  L  L++ N +
Sbjct: 150 LTNLQYLSIGNAQ 162

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.7 bits (197), Expect = 1e-16
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 12/137 (8%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
              L +   +    +N+ D++       +  L       +      +  ++ L  L L  
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 149 NQLNGQLSDM--FQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVL 206
           N    Q++D+   +   K+  L+LS N L   +  + A L S+K L L + Q T  +  L
Sbjct: 73  N----QITDLAPLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQIT-DVTPL 125

Query: 207 GKLP-LDELNVENNKFS 222
             L  L  L ++ N+ +
Sbjct: 126 AGLSNLQVLYLDLNQIT 142

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.5 bits (186), Expect = 3e-15
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 25/151 (16%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           +  L+S+  LD+++  + D  P     NL+ L L  NQ +   P  ++ ++ L+YL++G+
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGN 160

Query: 149 NQL------------------NGQLSDM--FQKNEKLETLDLSKNQLTGELPRSFASLSS 188
            Q+                  + ++SD+        L  + L  NQ++   P   A+ S+
Sbjct: 161 AQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSN 218

Query: 189 LKKLYLQNNQFTGSINVLGKLPLDELNVENN 219
           L  + L N   T +  V     L   NV   
Sbjct: 219 LFIVTLTNQTIT-NQPVFYNNNLVVPNVVKG 248

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 26/131 (19%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           L NL  ++ L   +N + D  P    PNL  + L  NQ        IS +S L   +   
Sbjct: 169 LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQ--------ISDVSPLANTS--- 217

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
                           L  + L+   +T +      +L     +   +        +   
Sbjct: 218 ---------------NLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDN 262

Query: 209 LPLDELNVENN 219
                 N+  N
Sbjct: 263 GTYASPNLTWN 273

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 87.9 bits (218), Expect = 1e-19
 Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 9/136 (6%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           + +   V   +    NL  ++P  LP +   L LSEN        ++   + L  LNL  
Sbjct: 9   VASHLEV---NCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG-SINVLG 207
            +L      +      L TLDLS NQL   LP    +L +L  L +  N+ T   +  L 
Sbjct: 65  AEL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 208 KLP-LDELNVENNKFS 222
            L  L EL ++ N+  
Sbjct: 122 GLGELQELYLKGNELK 137

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 82.1 bits (203), Expect = 2e-17
 Identities = 45/181 (24%), Positives = 67/181 (37%), Gaps = 23/181 (12%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSI-SQMSELKYL 144
            L  L     LD+S+N L+ S+P      P L  LD+S N+ + ++P      + EL+ L
Sbjct: 75  TLPVLG---TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQEL 129

Query: 145 NLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRS-FASLSSLKKLYLQNNQFTGSI 203
            L  N+L      +     KLE L L+ N LT ELP      L +L  L LQ N    +I
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TI 187

Query: 204 --NVLGKLPLDELNVENNK---------FSGWVPEELKDIAKTGGNSWSSSPAPPPPPGT 252
                G   L    +  N          F  W+ ++  +                     
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDNAENVYVWKQGVDVKAMTSNVASV 246

Query: 253 K 253
           +
Sbjct: 247 Q 247

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 89.9 bits (223), Expect = 2e-19
 Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 10/138 (7%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSG-TVPYSISQMSELKYLN 145
               K+   + ++NN +             +++LDL  N+          +    L++LN
Sbjct: 119 GQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINV 205
           L  N +      +      L+TLDLS N+L   +   F S + +  + L+NN+       
Sbjct: 176 LQYNFIYDVKGQVVFAK--LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKA 232

Query: 206 LGKLP-LDELNVENNKFS 222
           L     L+  ++  N F 
Sbjct: 233 LRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 89.1 bits (221), Expect = 3e-19
 Identities = 24/138 (17%), Positives = 54/138 (39%), Gaps = 11/138 (7%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLG 147
            L     +  L++S+N L +++  +    L+ LDL+ N         +     ++ L+  
Sbjct: 53  DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAA 107

Query: 148 SNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG--SINV 205
           +N ++       Q     + + L+ N++T          S ++ L L+ N+        +
Sbjct: 108 NNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 206 LGKLP-LDELNVENNKFS 222
                 L+ LN++ N   
Sbjct: 165 AASSDTLEHLNLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 85.7 bits (212), Expect = 4e-18
 Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 14/163 (8%)

Query: 64  ITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLD 121
           I  +G+     K++   L   L     +  +V  LD+S N L       L     L+ L+
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 122 LSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPR 181
           LS N         +  +S L+ L+L +N +             +ETL  + N ++  +  
Sbjct: 65  LSSNVLY-ETL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC 116

Query: 182 SFASLSSLKKLYLQNNQFTG-SINVLGKLP-LDELNVENNKFS 222
           S       K +YL NN+ T       G    +  L+++ N+  
Sbjct: 117 S--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 77.2 bits (190), Expect = 3e-15
 Identities = 23/133 (17%), Positives = 51/133 (38%), Gaps = 3/133 (2%)

Query: 91  NLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQ 150
           +  ++ +L++  N + D     +   LK LDLS N+ +  +       + + +++L +N+
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 151 LNGQLSDMFQKNEKLETLDLSKNQL-TGELPRSFASLSSLKKLYLQNNQFTGSINVLGKL 209
           L   +    + ++ LE  DL  N    G L   F+    ++ +  Q  +     N     
Sbjct: 226 LV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 210 PLDELNVENNKFS 222
                +       
Sbjct: 285 VPTLGHYGAYCCE 297

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 155 LSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG-SINVLGKLP-LD 212
           + ++ Q   + +   ++ + L   L     S  ++K+L L  N  +  S   L     L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 213 ELNVENNKFSG 223
            LN+ +N    
Sbjct: 62  LLNLSSNVLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.8 bits (137), Expect = 7e-09
 Identities = 13/130 (10%), Positives = 35/130 (26%), Gaps = 8/130 (6%)

Query: 76  LSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQF-------S 128
           ++   +    G         +         +D +P      L  L   E+         +
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCED-LPAPFADRLIALKRKEHALLSGQGSET 325

Query: 129 GTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSS 188
             +       +  + ++    Q    +  +  + +   TL+  K  L  ++     + + 
Sbjct: 326 ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAE 385

Query: 189 LKKLYLQNNQ 198
           L     Q   
Sbjct: 386 LDGTLQQAVG 395

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.8 bits (137), Expect = 8e-09
 Identities = 13/156 (8%), Positives = 39/156 (25%), Gaps = 30/156 (19%)

Query: 89  LTNLKSVSYLDVSNNNLK-DSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLG 147
           L   +++ + D+  N     ++      N +   +++         +  + +     + G
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

Query: 148 SNQLN----------------------------GQLSDMFQKNEKLETLDLSKNQLTGEL 179
           +                                 +L    +   +   +D  K Q    +
Sbjct: 293 AYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVI 352

Query: 180 PRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELN 215
            +      +   L  +           G+    EL+
Sbjct: 353 DQVTLRKQAKITLEQKKKALD-EQVSNGRRAHAELD 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 16/144 (11%), Positives = 45/144 (31%), Gaps = 5/144 (3%)

Query: 91  NLKSVSYLDVSNNNLKD-SIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSN 149
             K  + L    +  +      +     + +D  + Q+   +     +      L     
Sbjct: 311 KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370

Query: 150 QLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT---GSINVL 206
            L+ Q+S+  + + +L+           EL  +    S L+ L     ++         +
Sbjct: 371 ALDEQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQSPLQLLRAIVKRYEEMYVEQQSV 429

Query: 207 GKLPLDELNVENNKFSGWVPEELK 230
               + + ++  +K +    E  +
Sbjct: 430 QNNAIRDWDMYQHKETQLAEENAR 453

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 89.4 bits (222), Expect = 2e-19
 Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 14/146 (9%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIP----YQLPPNLKHLDLSENQFSGTVPYSI-SQMSELKY 143
            + L+ + +L V        I       L  +L  L L  NQF   +     + ++ L+ 
Sbjct: 50  FSRLQDLQFLKVEQQTPGLVIRNNTFRGL-SSLIILKLDYNQFL-QLETGAFNGLANLEV 107

Query: 144 LNLGSNQLNGQL--SDMFQKNEKLETLDLSKNQLTGELPRS-FASLSSLKKLYLQNNQFT 200
           L L    L+G +   + F+    LE L L  N +    P S F ++     L L  N+  
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167

Query: 201 ----GSINVLGKLPLDELNVENNKFS 222
                 +          L + +    
Sbjct: 168 SICEEDLLNFQGKHFTLLRLSSITLQ 193

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 87.1 bits (216), Expect = 2e-18
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 101 SNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLS-DMF 159
            N  L   +P +LP ++ ++DLS N  +     S S++ +L++L +        +  + F
Sbjct: 18  INRGLH-QVP-ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75

Query: 160 QKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI---NVLGKLP-LDELN 215
           +    L  L L  NQ       +F  L++L+ L L      G++   N    L  L+ L 
Sbjct: 76  RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135

Query: 216 VENNK 220
           + +N 
Sbjct: 136 LRDNN 140

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 84.8 bits (210), Expect = 7e-18
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 11/163 (6%)

Query: 65  TCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP---PNLKHLD 121
              GSS               G + + +K     D+S + +  ++   +     +L+ L 
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVK---TCDLSKSKIF-ALLKSVFSHFTDLEQLT 305

Query: 122 LSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPR 181
           L++N+ +     +   ++ L  LNL  N L    S MF+  +KLE LDLS N +     +
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365

Query: 182 SFASLSSLKKLYLQNNQFTGSI--NVLGKLP-LDELNVENNKF 221
           SF  L +LK+L L  NQ   S+   +  +L  L ++ +  N +
Sbjct: 366 SFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.8 bits (145), Expect = 9e-10
 Identities = 32/155 (20%), Positives = 52/155 (33%), Gaps = 18/155 (11%)

Query: 91  NLKSVSYLDVSNNNLKDSIP---YQLPPNLKHLDLSENQFSGTVPYSI---SQMSELKYL 144
            L S+  L + +NN+K   P   +        LDL+ N+   ++        Q      L
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLL 185

Query: 145 NLGSNQL--------NGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKL-YLQ 195
            L S  L          +      KN  + TLDLS N     + + F    +  K+  L 
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 196 NNQFTGSINVLGKLPLDELNVENNKFSGWVPEELK 230
            +      +  G     +   +N  F G     +K
Sbjct: 246 LSNSYNMGSSFGHTNFKDP--DNFTFKGLEASGVK 278

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 34/176 (19%)

Query: 66  CSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIP--------------- 110
           C      E++L+ LGL+  L     +L+S   L  S N+L   +P               
Sbjct: 68  CLDRQAHELELNNLGLS-SLPELPPHLES---LVASCNSLT-ELPELPQSLKSLLVDNNN 122

Query: 111 ----YQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLE 166
                 LPP L++L +S NQ    +P  +   S LK +++ +N L      +      LE
Sbjct: 123 LKALSDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSL----KKLPDLPPSLE 176

Query: 167 TLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFS 222
            +    NQL  ELP    +L  L  +Y  NN      ++     L+ +   NN   
Sbjct: 177 FIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKLPDLPLS--LESIVAGNNILE 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.0 bits (216), Expect = 1e-18
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 13/142 (9%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           L N   +  +DV NN+LK  +P  LPP+L+ +    NQ    +P  +  +  L  +   +
Sbjct: 149 LQNSSFLKIIDVDNNSLK-KLP-DLPPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADN 204

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
           N L      +      LE++    N L  ELP    +L  L  +Y  NN      ++   
Sbjct: 205 NSL----KKLPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPDLPPS 258

Query: 209 LPLDELNVENNKFSGWVPEELK 230
             L+ LNV +N  +  +PE  +
Sbjct: 259 --LEALNVRDNYLTD-LPELPQ 277

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.0 bits (216), Expect = 1e-18
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 23/158 (14%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLG 147
           +L NL  ++ +   NN LK ++P  LPP+L+ L++ +N  +  +P     ++ L      
Sbjct: 232 ELQNLPFLTTIYADNNLLK-TLP-DLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENI 288

Query: 148 SNQL-------------NGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYL 194
            + L             + ++  +      LE L++S N+L  ELP   A    L++L  
Sbjct: 289 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIA 344

Query: 195 QNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDI 232
             N       +     L +L+VE N      P+  + +
Sbjct: 345 SFNHLAEVPELPQN--LKQLHVEYNPLR-EFPDIPESV 379

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 26/128 (20%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSE-------- 140
              L+    L  S N+L   +P +LP NLK L +  N      P     + +        
Sbjct: 336 PPRLE---RLIASFNHLA-EVP-ELPQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLA 389

Query: 141 --------LKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKL 192
                   LK L++ +N L     +     E +E L ++  ++      +  +   L+  
Sbjct: 390 EVPELPQNLKQLHVETNPL----REFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDD 445

Query: 193 YLQNNQFT 200
             +++   
Sbjct: 446 VFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 31/168 (18%)

Query: 91  NLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           +   +      ++NL   +P +     +      + +++    P    +  E+    L  
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 149 NQLNG---------QLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
                          LS + +    LE+L  S N LT ELP    SL SL          
Sbjct: 68  CLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 126

Query: 200 TG----------SINVLGKLP-------LDELNVENNKFSGWVPEELK 230
           +           S N L KLP       L  ++V+NN     +P+   
Sbjct: 127 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-LPDLPP 173

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 88.4 bits (219), Expect = 3e-19
 Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 10/138 (7%)

Query: 94  SVSYLDVSNNNL----KDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSN 149
             + LD+S+NNL     +  P +L  NL  L LS N  +     +   +  L+YL+L SN
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLT-NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 150 QLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT----GSINV 205
            L+     +F   + LE L L  N +      +F  ++ L+KLYL  NQ +      I  
Sbjct: 99  HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158

Query: 206 LGKLP-LDELNVENNKFS 222
             KLP L  L++ +NK  
Sbjct: 159 GNKLPKLMLLDLSSNKLK 176

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 85.1 bits (211), Expect = 9e-19
 Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 9/133 (6%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
              L  V   +  N+N++     Q   NLK L LS NQ S   P  +  +++L+ L++  
Sbjct: 37  QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
           N+L   L+ +   +  L  L L  N+L      S   L +L+ L ++NN+   SI +LG 
Sbjct: 95  NRLK-NLNGI--PSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK-SIVMLGF 148

Query: 209 LP-LDELNVENNK 220
           L  L+ L++  N+
Sbjct: 149 LSKLEVLDLHGNE 161

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 77.0 bits (190), Expect = 6e-16
 Identities = 29/135 (21%), Positives = 60/135 (44%), Gaps = 13/135 (9%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
              L +    ++   ++ D +  +    +++ +   +         +   + LK L+L  
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH 72

Query: 149 NQLNGQLSDM--FQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVL 206
           N    Q+SD+   +   KLE L +++N+L   L  +    + L +L+L NN+     + L
Sbjct: 73  N----QISDLSPLKDLTKLEELSVNRNRLK-NL--NGIPSACLSRLFLDNNELR-DTDSL 124

Query: 207 GKLP-LDELNVENNK 220
             L  L+ L++ NNK
Sbjct: 125 IHLKNLEILSIRNNK 139

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.0 bits (177), Expect = 3e-14
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 11/124 (8%)

Query: 101 SNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDM-- 158
               +    P     N    +L +   +  V     ++S ++  N  ++     +  +  
Sbjct: 5   RPTPINQVFPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNS----NIQSLAG 58

Query: 159 FQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVEN 218
            Q    L+ L LS NQ++ +L      L+ L++L +  N+   ++N +    L  L ++N
Sbjct: 59  MQFFTNLKELHLSHNQIS-DLS-PLKDLTKLEELSVNRNRLK-NLNGIPSACLSRLFLDN 115

Query: 219 NKFS 222
           N+  
Sbjct: 116 NELR 119

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 4/129 (3%)

Query: 91  NLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQ 150
               +S L + NN L+D+       NL+ L +  N+    V   +  +S+L+ L+L  N+
Sbjct: 104 PSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNE 161

Query: 151 LNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP 210
           +         + +K+  +DL+  +   E  +    L     +   + ++     +     
Sbjct: 162 IT-NTGG-LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGS 219

Query: 211 LDELNVENN 219
             +  V   
Sbjct: 220 YVDGCVLWE 228

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.5 bits (217), Expect = 1e-18
 Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 9/141 (6%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIP----YQLPPNLKHLDLSENQFSGTVPYSISQMSELKY 143
              +L+ +  L +S N+++ +I       L  NL  L+L +N+ +     +   +S+LK 
Sbjct: 83  SFKHLRHLEILQLSRNHIR-TIEIGAFNGL-ANLNTLELFDNRLTTIPNGAFVYLSKLKE 140

Query: 144 LNLGSNQLNGQLSDMFQKNEKLETLDLSK-NQLTGELPRSFASLSSLKKLYLQNNQFTGS 202
           L L +N +    S  F +   L  LDL +  +L+     +F  LS+L+ L L        
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199

Query: 203 INVLGKLP-LDELNVENNKFS 222
           I  L  L  LDEL++  N  S
Sbjct: 200 IPNLTPLIKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.3 bits (214), Expect = 2e-18
 Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 9/140 (6%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLP---PNLKHLDLSE-NQFSGTVPYSISQMSELKYL 144
              L  +  L + NN ++ SIP       P+L+ LDL E  + S     +   +S L+YL
Sbjct: 132 FVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190

Query: 145 NLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG-SI 203
           NL    L            KL+ LDLS N L+   P SF  L  L+KL++  +Q      
Sbjct: 191 NLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER 248

Query: 204 NVLGKLP-LDELNVENNKFS 222
           N    L  L E+N+ +N  +
Sbjct: 249 NAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 85.6 bits (212), Expect = 4e-18
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 2/110 (1%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLP-PNLKHLDLSENQFSGTVPYSISQMSELKYLNLG 147
              L ++ YL+++  NL+  IP   P   L  LDLS N  S   P S   +  L+ L + 
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239

Query: 148 SNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNN 197
            +Q+     + F   + L  ++L+ N LT      F  L  L++++L +N
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.0 bits (208), Expect = 1e-17
 Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 5/123 (4%)

Query: 101 SNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQ 160
              NL   +P  +  N + L+L ENQ       S   +  L+ L L  N +       F 
Sbjct: 51  VRKNL-REVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN 109

Query: 161 KNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT----GSINVLGKLPLDELNV 216
               L TL+L  N+LT     +F  LS LK+L+L+NN        + N +  L   +L  
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169

Query: 217 ENN 219
              
Sbjct: 170 LKR 172

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIP----YQLPPNLKHLDLSENQFSGTVPYSISQMSELKYL 144
           LT L  +  LD+S N+L  +I       L  +L+ L + ++Q       +   +  L  +
Sbjct: 203 LTPLIKLDELDLSGNHLS-AIRPGSFQGLM-HLQKLWMIQSQIQVIERNAFDNLQSLVEI 260

Query: 145 NLGSNQLNGQLSDMFQKNEKLETLDLSKNQL 175
           NL  N L     D+F     LE + L  N  
Sbjct: 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.1 bits (211), Expect = 1e-18
 Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 26/153 (16%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
              L S+  +  +N+++K     Q  PN+  L L+ N+ +   P  ++ +  L +L L  
Sbjct: 42  QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99

Query: 149 NQL------------------NGQLSDM--FQKNEKLETLDLSKNQLTGELPRSFASLSS 188
           N++                  +  +SD+       +LE+L L  N++T       + L+ 
Sbjct: 100 NKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD--ITVLSRLTK 157

Query: 189 LKKLYLQNNQFTGSINVLGKLP-LDELNVENNK 220
           L  L L++NQ +  I  L  L  L  L +  N 
Sbjct: 158 LDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNH 189

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 79.7 bits (197), Expect = 9e-17
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 8/133 (6%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
                     ++   ++ D++      ++  +  + +         I  +  +  L L  
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
           N+L   +       + L  L L +N++  +L  S   L  LK L L++N  +  IN L  
Sbjct: 78  NKLT-DIKP-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-DINGLVH 132

Query: 209 LP-LDELNVENNK 220
           LP L+ L + NNK
Sbjct: 133 LPQLESLYLGNNK 145

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 8/122 (6%)

Query: 102 NNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQK 161
              +K              +L +   +  V    ++++ +  +   ++ +   +    Q 
Sbjct: 11  PTPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQY 66

Query: 162 NEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNK 220
              +  L L+ N+LT   P   A+L +L  L+L  N+    ++ L  L  L  L++E+N 
Sbjct: 67  LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSLEHNG 123

Query: 221 FS 222
            S
Sbjct: 124 IS 125

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 24/153 (15%), Positives = 46/153 (30%), Gaps = 28/153 (18%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           L+ L  +  L + +N + D +P      L++L LS+N         IS +  L  L    
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH--------ISDLRALAGLK--- 200

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG--SINVL 206
                           L+ L+L   +   +     ++L     +   +        I+  
Sbjct: 201 ---------------NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 245

Query: 207 GKLPLDELNVENNKFSGWVPEELKDIAKTGGNS 239
           G      +     +F+  V          G   
Sbjct: 246 GDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAK 278

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.6 bits (212), Expect = 2e-18
 Identities = 42/125 (33%), Positives = 56/125 (44%), Gaps = 4/125 (3%)

Query: 99  DVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDM 158
             S+ +L +SIP  L   +K LDLS N+ +      + +   L+ L L SN +N    D 
Sbjct: 37  KGSSGSL-NSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95

Query: 159 FQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT--GSINVLGKLP-LDELN 215
           F     LE LDLS N L+      F  LSSL  L L  N +   G  ++   L  L  L 
Sbjct: 96  FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155

Query: 216 VENNK 220
           V N  
Sbjct: 156 VGNMD 160

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 30/153 (19%), Positives = 62/153 (40%), Gaps = 13/153 (8%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQL---PPNLKHLDLSENQFSGTVPYSI-SQMSELKYL 144
           L +L+   +LD+S N L  ++         +L  L+L  N +      S+ S +++L+ L
Sbjct: 99  LGSLE---HLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154

Query: 145 NLGSNQLNGQLSD-MFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI 203
            +G+     ++    F     LE L++  + L    P+S  S+ ++  L L   Q    +
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LL 213

Query: 204 --NVLGKLP-LDELNVENNKFSGWVPEELKDIA 233
               +     ++ L + +     +   EL    
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.8 bits (184), Expect = 8e-15
 Identities = 25/146 (17%), Positives = 54/146 (36%), Gaps = 18/146 (12%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLP---PNLKHLDLSENQFSGTVPYSISQMSELKYLN 145
           LT L+    L++  ++L+ S   +      N+ HL L   Q    +   +   S ++ L 
Sbjct: 173 LTFLE---ELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 146 LGSNQLNGQ--------LSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNN 197
           L    L+           ++   K      + ++   L  ++ +    +S L +L    N
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRN 287

Query: 198 QFTG-SINVLGKLP-LDELNVENNKF 221
           Q       +  +L  L ++ +  N +
Sbjct: 288 QLKSVPDGIFDRLTSLQKIWLHTNPW 313

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 86.7 bits (215), Expect = 2e-18
 Identities = 34/151 (22%), Positives = 56/151 (37%), Gaps = 10/151 (6%)

Query: 76  LSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSI 135
            +   +          L +++ LD  N+++ D    +    L  L  + N  +      +
Sbjct: 25  AAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT---LDL 81

Query: 136 SQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQ 195
           SQ + L YL   SN+L    +       KL  L+   N+LT +L    +    L  L   
Sbjct: 82  SQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCA 135

Query: 196 NNQFTGSINVLGKLPLDELNVENNKFSGWVP 226
            N  T  I+V     L EL+   NK    + 
Sbjct: 136 RNTLT-EIDVSHNTQLTELDCHLNKKITKLD 165

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 10/134 (7%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           +++   ++ LD   N     +       L  LD S N+ +      +SQ   L  LN  +
Sbjct: 144 VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDT 200

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
           N +  +L     +N +L  LD S N+LT E+      L+ L       N  T  ++V   
Sbjct: 201 NNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVSTL 253

Query: 209 LPLDELNVENNKFS 222
             L  L+       
Sbjct: 254 SKLTTLHCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 8/134 (5%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           LT+   + Y           +       L  LD      +      +SQ  +L YL L +
Sbjct: 271 LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNN 327

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
            +L  +L      N KL++L      +  +   S   + +L   +    Q          
Sbjct: 328 TELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLT 382

Query: 209 LPLDELNVENNKFS 222
                + V  +   
Sbjct: 383 NNSLTIAVSPDLLD 396

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 101 SNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQ 160
              +  D  P     N      +  +   T   S  Q++ L  L+  ++ +   ++   +
Sbjct: 7   QTQSFNDWFP---DDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IE 61

Query: 161 KNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNK 220
           K   L  L  + N +T  L    +  ++L  L   +N+ T +++V     L  LN + NK
Sbjct: 62  KLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLT-NLDVTPLTKLTYLNCDTNK 117

Query: 221 FS 222
            +
Sbjct: 118 LT 119

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 23/149 (15%), Positives = 36/149 (24%), Gaps = 18/149 (12%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           L+    + YL ++N  L   +       LK L             S+ ++  L       
Sbjct: 314 LSQNPKLVYLYLNNTELT-ELDVSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAE 370

Query: 149 NQLNGQLSDMFQKNE-----KLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI 203
            Q      +    N        + LD   N +                     N  T   
Sbjct: 371 GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN-------IEPGDGGVYDQATNTIT-WE 422

Query: 204 NVLGKLPLDEL--NVENNKFSGWVPEELK 230
           N+    P        EN    G V    +
Sbjct: 423 NLSTDNPAVTYTFTSENGAIVGTVTTPFE 451

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.3 bits (214), Expect = 2e-18
 Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 7/140 (5%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQL---PPNLKHLDLSENQFSGTVPYSISQMSELKYL 144
              +L  +  L +  N+++  I         +L  L+L +N  +     +   +S+L+ L
Sbjct: 94  TFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152

Query: 145 NLGSNQLNGQLSDMFQKNEKLETLDLSK-NQLTGELPRSFASLSSLKKLYLQNNQFTGSI 203
            L +N +    S  F +   L  LDL +  +L      +F  L +LK L L        +
Sbjct: 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DM 211

Query: 204 NVLGKLP-LDELNVENNKFS 222
             L  L  L+EL +  N F 
Sbjct: 212 PNLTPLVGLEELEMSGNHFP 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 83.3 bits (206), Expect = 2e-17
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPY-QLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLG 147
              L ++ YL++   N+K  +P       L+ L++S N F    P S   +S LK L + 
Sbjct: 192 FEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250

Query: 148 SNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
           ++Q++    + F     L  L+L+ N L+      F  L  L +L+L +N +
Sbjct: 251 NSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.9 bits (205), Expect = 3e-17
 Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 14/135 (10%)

Query: 101 SNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQ 160
           +   L   +P  +P N ++L+L EN        +   +  L+ L LG N +       F 
Sbjct: 62  TRRGL-SEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN 120

Query: 161 KNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQ--------FTGSINVLGKLPLD 212
               L TL+L  N LT     +F  LS L++L+L+NN         F    + L +L L 
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS-LMRLDLG 179

Query: 213 ELN----VENNKFSG 223
           EL     +    F G
Sbjct: 180 ELKKLEYISEGAFEG 194

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.0 bits (195), Expect = 6e-16
 Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 9/137 (6%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIP----YQLPPNLKHLDLSENQFSGTVPYSISQMSELKYL 144
              + S+  LD+      + I       L  NLK+L+L        +P +++ +  L+ L
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLF-NLKYLNLGMCNIK-DMP-NLTPLVGLEEL 223

Query: 145 NLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG-SI 203
            +  N         F     L+ L +  +Q++     +F  L+SL +L L +N  +    
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283

Query: 204 NVLGKLP-LDELNVENN 219
           ++   L  L EL++ +N
Sbjct: 284 DLFTPLRYLVELHLHHN 300

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 82.8 bits (205), Expect = 2e-18
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 4/118 (3%)

Query: 108 SIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLET 167
            IP  LP  +  + L +N      P + S   +L+ ++L +NQ++    D FQ    L +
Sbjct: 25  EIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84

Query: 168 LDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI--NVLGKLP-LDELNVENNKFS 222
           L L  N++T      F  L SL+ L L  N+    +  +    L  L+ L++ +NK  
Sbjct: 85  LVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 76.2 bits (188), Expect = 4e-16
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 8/114 (7%)

Query: 91  NLKSVSYLDVSNNNLKDSIP----YQLPPNLKHLDLSENQFSGTVPYSI-SQMSELKYLN 145
             K +  +D+SNN +   +       L  +L  L L  N+ +  +P S+   +  L+ L 
Sbjct: 54  PYKKLRRIDLSNNQIS-ELAPDAFQGLR-SLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110

Query: 146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
           L +N++N    D FQ    L  L L  N+L      +F+ L +++ ++L  N F
Sbjct: 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.8 bits (209), Expect = 1e-17
 Identities = 39/137 (28%), Positives = 71/137 (51%), Gaps = 12/137 (8%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
              L S+  +  +N+++K     Q  PN+  L L+ N+ +   P  ++ +  L +L L  
Sbjct: 39  QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96

Query: 149 NQLNGQLSDM--FQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVL 206
           N    ++ D+   +  +KL++L L  N ++ ++      L  L+ LYL NN+ T  I VL
Sbjct: 97  N----KIKDLSSLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT-DITVL 149

Query: 207 GKLP-LDELNVENNKFS 222
            +L  LD L++E+N+ S
Sbjct: 150 SRLTKLDTLSLEDNQIS 166

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 83.2 bits (205), Expect = 4e-17
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 12/135 (8%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
                     ++   ++ D++      ++  +  + +         I  +  +  L L  
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 74

Query: 149 NQLNGQLSDM--FQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVL 206
           N    +L+D+      + L  L L +N++  +L  S   L  LK L L++N  +  IN L
Sbjct: 75  N----KLTDIKPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGIS-DINGL 127

Query: 207 GKLP-LDELNVENNK 220
             LP L+ L + NNK
Sbjct: 128 VHLPQLESLYLGNNK 142

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.5 bits (172), Expect = 4e-13
 Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 8/126 (6%)

Query: 98  LDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSD 157
               +  +K   P          +L +   +  V    ++++ +  +   ++ +   +  
Sbjct: 4   TITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG 60

Query: 158 MFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNV 216
             Q    +  L L+ N+LT   P    +L +L  L+L  N+    ++ L  L  L  L++
Sbjct: 61  -IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSSLKDLKKLKSLSL 116

Query: 217 ENNKFS 222
           E+N  S
Sbjct: 117 EHNGIS 122

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.7 bits (144), Expect = 1e-09
 Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 28/168 (16%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS 148
           L+ L  +  L + +N + D +P      L++L LS+N         IS +  L  L    
Sbjct: 149 LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH--------ISDLRALAGLK--- 197

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
                           L+ L+L   +   +     ++L     +   +        +   
Sbjct: 198 ---------------NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 242

Query: 209 LPLDELNVENN--KFSGWVPEELKDIAKTGGNSWSSSPAPPPPPGTKP 254
              ++ NV+ +  +F+  V          G            P     
Sbjct: 243 GDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVY 290

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 81.6 bits (202), Expect = 1e-17
 Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 10/134 (7%)

Query: 91  NLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQ 150
           N  SV   D S+  L  +IP  +P + K LDL  N+ S     +  ++++L+ L L  N+
Sbjct: 17  NKNSV---DCSSKKL-TAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72

Query: 151 LNGQLSDMFQKNEKLETLDLSKNQLTGELPRS-FASLSSLKKLYLQNNQFTGSI--NVLG 207
           L    + +F++ + LETL ++ N+L   LP   F  L +L +L L  NQ   S+   V  
Sbjct: 73  LQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFD 130

Query: 208 KLP-LDELNVENNK 220
            L  L  L++  N+
Sbjct: 131 SLTKLTYLSLGYNE 144

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 80.8 bits (200), Expect = 3e-17
 Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 15/141 (10%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQLP---PNLKHLDLSENQFSGTVPYSI-SQMSELKY 143
           +LT L+    L +++N L+ ++P  +     NL+ L +++N+    +P  +  Q+  L  
Sbjct: 59  RLTKLR---LLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAE 113

Query: 144 LNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELP-RSFASLSSLKKLYLQNNQFTGS 202
           L L  NQL      +F    KL  L L  N+L   LP   F  L+SLK+L L NNQ    
Sbjct: 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-R 171

Query: 203 I--NVLGKLP-LDELNVENNK 220
           +      KL  L  L ++NN+
Sbjct: 172 VPEGAFDKLTELKTLKLDNNQ 192

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 9/117 (7%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIP---YQLPPNLKHLDLSENQFSGTVPYSI-SQMSELKY 143
           +L NL+    L V++N L+ ++P   +    NL  L L  NQ   ++P  +   +++L Y
Sbjct: 83  ELKNLE---TLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTY 137

Query: 144 LNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT 200
           L+LG N+L      +F K   L+ L L  NQL      +F  L+ LK L L NNQ  
Sbjct: 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.2 bits (175), Expect = 4e-14
 Identities = 41/118 (34%), Positives = 54/118 (45%), Gaps = 17/118 (14%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQLPP-------NLKHLDLSENQFSGTVPYSI-SQMS 139
           QL NL     L +  N LK      LPP        L +L L  N+   ++P  +  +++
Sbjct: 107 QLVNLA---ELRLDRNQLK-----SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLT 157

Query: 140 ELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNN 197
            LK L L +NQL       F K  +L+TL L  NQL      +F SL  LK L LQ N
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 165 LETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG-SINVLGKLP-LDELNVENNKFS 222
            + LDL  N+L+    ++F  L+ L+ LYL +N+       +  +L  L+ L V +NK  
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.9 bits (207), Expect = 2e-17
 Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 18/148 (12%)

Query: 84  QLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKY 143
                    +  +    + N     +   L      L L+    S ++P ++    ++  
Sbjct: 28  DYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLPP--QITV 84

Query: 144 LNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI 203
           L +  N L   L ++      LE LD   N+L+  LP      +SLK L + NNQ T   
Sbjct: 85  LEITQNAL-ISLPELP---ASLEYLDACDNRLS-TLP---ELPASLKHLDVDNNQLT--- 133

Query: 204 NVLGKLP--LDELNVENNKFSGWVPEEL 229
            +L +LP  L+ +N +NN+ +  +PE  
Sbjct: 134 -MLPELPALLEYINADNNQLTM-LPELP 159

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 77.3 bits (190), Expect = 3e-15
 Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 15/166 (9%)

Query: 75  KLSGLGLNG----QLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGT 130
            L  +  +      L    T+L+    L V NN L   +P +LP +L+ LD+S N    +
Sbjct: 141 LLEYINADNNQLTMLPELPTSLEV---LSVRNNQLT-FLP-ELPESLEALDVSTNLLE-S 194

Query: 131 VPYSISQMSELK----YLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASL 186
           +P    +    +    +     N++   + +     +   T+ L  N L+  +  S +  
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253

Query: 187 SSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDI 232
           ++    +     F+ S      L     +     F      ++  I
Sbjct: 254 TAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQI 299

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 26/122 (21%)

Query: 130 TVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLS---KNQLTGELPRSFASL 186
           ++   I+    L   N   N ++G  +D F   +K E   L    +N+    L      +
Sbjct: 2   SIMLPINNNFSLS-QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--I 58

Query: 187 SSLKKLYLQNNQFTG--------------SINVLGKLP-----LDELNVENNKFSGWVPE 227
           +   +L L     +               + N L  LP     L+ L+  +N+ S  +PE
Sbjct: 59  NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLST-LPE 117

Query: 228 EL 229
             
Sbjct: 118 LP 119

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 78.9 bits (195), Expect = 5e-17
 Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 6/126 (4%)

Query: 101 SNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSI-SQMSELKYLNLGSNQLNGQLSDMF 159
           SN  L   IP  +P     L L+ N+F+      I  ++ +L+ +N  +N++       F
Sbjct: 19  SNQKLN-KIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF 77

Query: 160 QKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI--NVLGKLP-LDELNV 216
           +    +  + L+ N+L     + F  L SLK L L++N+ T  +  +    L  +  L++
Sbjct: 78  EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSL 136

Query: 217 ENNKFS 222
            +N+ +
Sbjct: 137 YDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 77.0 bits (190), Expect = 3e-16
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 14/117 (11%)

Query: 91  NLKSVSYLDVSNNNLKDSIPYQLPP-------NLKHLDLSENQFSGTVPYSI-SQMSELK 142
            L  +  ++ SNN + D     +          +  + L+ N+    V + +   +  LK
Sbjct: 55  KLPQLRKINFSNNKITD-----IEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLK 108

Query: 143 YLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
            L L SN++    +D F     +  L L  NQ+T   P +F +L SL  L L  N F
Sbjct: 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 9/133 (6%)

Query: 94  SVSYLDVSNNN---LKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQ 150
             + L ++NN    L+ +  ++  P L+ ++ S N+ +     +    S +  + L SN+
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 151 LNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT----GSINVL 206
           L      MF+  E L+TL L  N++T     SF  LSS++ L L +NQ T    G+ + L
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 207 GKLPLDELNVENN 219
               L  LN+  N
Sbjct: 153 HS--LSTLNLLAN 163

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 79.8 bits (197), Expect = 1e-16
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 394 PFSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEI 453
                +L   +       +   G  G V++A+  +  V AVK       Q   +E   E+
Sbjct: 13  DLGTENLYFQSMPLQLLEVKARGRFGCVWKAQLLNEYV-AVKIFPIQDKQSWQNEY--EV 69

Query: 454 VQNISRIRHTNIAELVGFCSEQGHN----ILIYDYYRNGSLHEFLH 495
              +  ++H NI + +G             LI  ++  GSL +FL 
Sbjct: 70  YS-LPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLK 114

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 77.8 bits (192), Expect = 2e-16
 Identities = 60/236 (25%), Positives = 95/236 (40%), Gaps = 35/236 (14%)

Query: 50  KAGGGDPCGEHWKGITCSGSSVTEI-----------KLSGLGLNGQLGYQLTNLKSVSYL 98
           +   G  C E  K + C G S+  +            L   GL          L  +++L
Sbjct: 5   ETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWL 64

Query: 99  DVSNNNLKDSIP---YQLPPNLKHLDLSENQFSGTVPYSI-SQMSELKYLNLGSNQLNGQ 154
           ++  N L+ ++    +     L  L L+ NQ + ++P  +   +++L  L LG NQL   
Sbjct: 65  NLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSL 122

Query: 155 LSDMFQKNEKLETLDLSKNQLTGELPRS-FASLSSLKKLYLQNNQFT----GSINVLGKL 209
            S +F +  KL+ L L+ NQL   +P   F  L++L+ L L  NQ      G+ + LGKL
Sbjct: 123 PSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181

Query: 210 PLDELNVENNKF----------SGWVPEELKDIAKTGGNSWSSSPAPPPPPGTKPV 255
               L    N+F          S W+ E    +    G +   SP        K V
Sbjct: 182 QTITLF--GNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDGKVV 235

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
              +G G+ G V+RA++  G  +AVK +    F       F   V  + R+RH NI   +
Sbjct: 42  KEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFM 100

Query: 470 GFCSEQGHNILIYDYYRNGSLHEFLH 495
           G  ++  +  ++ +Y   GSL+  LH
Sbjct: 101 GAVTQPPNLSIVTEYLSRGSLYRLLH 126

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.5 bits (189), Expect = 1e-15
 Identities = 33/141 (23%), Positives = 51/141 (36%), Gaps = 19/141 (13%)

Query: 94  SVSYLDVSNNNLKDSIPYQLPP-------NLKHLDLSENQFSGTVPYSI-SQMSELKYLN 145
           S   LD+S N L+      L          L+ LDLS  +   T+       +S L  L 
Sbjct: 29  STKNLDLSFNPLR-----HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLI 82

Query: 146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINV 205
           L  N +       F     L+ L   +  L          L +LK+L + +N    S  +
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKL 141

Query: 206 LG---KLP-LDELNVENNKFS 222
                 L  L+ L++ +NK  
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.5 bits (176), Expect = 4e-14
 Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 15/142 (10%)

Query: 88  QLTNLKSVSYLDVSNNNLK--DSIPYQLPPNLKHLDLSENQF-SGTVPYSISQMSELKYL 144
            L++L+    L     NL   ++ P      LK L+++ N   S  +P   S ++ L++L
Sbjct: 98  GLSSLQ---KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 145 NLGSNQLNGQLSDMFQKNEKLE----TLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT 200
           +L SN++        +   ++     +LDLS N +    P +F  +  LK+L L  NQ  
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLK 213

Query: 201 GSI--NVLGKLP-LDELNVENN 219
            S+   +  +L  L ++ +  N
Sbjct: 214 -SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 29/125 (23%), Positives = 42/125 (33%), Gaps = 29/125 (23%)

Query: 101 SNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQ 160
              N    IP  LP + K+LDLS N         +                    S  F 
Sbjct: 15  MELNF-YKIPDNLPFSTKNLDLSFNPLR-----HLG-------------------SYSFF 49

Query: 161 KNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI--NVLGKLP-LDELNVE 217
              +L+ LDLS+ ++      ++ SLS L  L L  N    S+       L  L +L   
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAV 108

Query: 218 NNKFS 222
               +
Sbjct: 109 ETNLA 113

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 51/181 (28%), Positives = 74/181 (40%), Gaps = 28/181 (15%)

Query: 99  DVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDM 158
             SN  LK  +P  +P ++  L L  NQF+  VP  +S    L  ++L +N+++   +  
Sbjct: 16  RCSNKGLK-VLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQS 73

Query: 159 FQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT----GSINVLGKLPLDEL 214
           F    +L TL LS N+L    PR+F  L SL+ L L  N  +    G+ N L    L  L
Sbjct: 74  FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA--LSHL 131

Query: 215 NVENNK---------FSGWVPEELK--DIAKTGGNSWSSSPAPPPPPGTKPVTKRKASPF 263
            +  N           S WV  E K   IA+  G         P     K +    +  F
Sbjct: 132 AIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAG---------PGEMADKLLLTTPSKKF 182

Query: 264 R 264
            
Sbjct: 183 T 183

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 75.9 bits (187), Expect = 2e-15
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
           G L+G+G  G+VY  ++  G+V A++ ID         ++F   V    + RH N+   +
Sbjct: 38  GELIGKGRFGQVYHGRW-HGEV-AIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFM 95

Query: 470 GFCSEQGHNILIYDYYRNGSLHEFLH 495
           G C    H  +I    +  +L+  + 
Sbjct: 96  GACMSPPHLAIITSLCKGRTLYSVVR 121

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 75.3 bits (185), Expect = 5e-15
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 9/106 (8%)

Query: 395 FSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIV 454
            + ++      N     L+G G  G VY+    D + +AVK    ++ Q   +E    I 
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQNFINE--KNIY 59

Query: 455 QNISRIRHTNIAELVGFCSEQGHNI-----LIYDYYRNGSLHEFLH 495
           + +  + H NIA  +        +      L+ +YY NGSL ++L 
Sbjct: 60  R-VPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLS 104

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 72.0 bits (177), Expect = 7e-15
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 99  DVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSI-SQMSELKYLNLGSNQLNGQLSD 157
           D +   LK  IP  +P +   L L++N+        +  ++  L  L L  NQL G   +
Sbjct: 14  DCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72

Query: 158 MFQKNEKLETLDLSKNQLTGELP-RSFASLSSLKKLYLQNNQFT----GSINVLGKL 209
            F+    ++ L L +N++  E+  + F  L  LK L L +NQ +    GS   L  L
Sbjct: 73  AFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 75.6 bits (185), Expect = 1e-14
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 4/114 (3%)

Query: 97  YLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLS 156
            L +++ +L      +    + HLDLS N+    +P +++ +  L+ L    N L   + 
Sbjct: 445 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD 502

Query: 157 DMFQKNEKLETLDLSKNQLTG-ELPRSFASLSSLKKLYLQNNQFTGSINVLGKL 209
                  +L+ L L  N+L      +   S   L  L LQ N       +  +L
Sbjct: 503 G-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 31/129 (24%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIP--YQLPPNLKHLDLSENQ 126
             VT + LS   L   L   L  L+ +  L  S+N L+ ++     L P L+ L L  N+
Sbjct: 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDGVANL-PRLQELLLCNNR 519

Query: 127 FSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLT---GELPRSF 183
                   + Q + ++ L                   +L  L+L  N L    G   R  
Sbjct: 520 --------LQQSAAIQPL---------------VSCPRLVLLNLQGNSLCQEEGIQERLA 556

Query: 184 ASLSSLKKL 192
             L S+  +
Sbjct: 557 EMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.4 bits (112), Expect = 7e-06
 Identities = 21/160 (13%), Positives = 41/160 (25%), Gaps = 25/160 (15%)

Query: 84  QLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP-PNLKHLDLSENQFSGTVPYSISQMSELK 142
                    + +   ++S                L+ L+        T+   +  +  L 
Sbjct: 340 CWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 399

Query: 143 YLNLGSNQLNG---------------------QLSDMFQKNEKLETLDLSKNQLTGELPR 181
           Y        +                      + S +  +   +  L L+   LT  L  
Sbjct: 400 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC- 457

Query: 182 SFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNK 220
               L  +  L L +N+       L  L  L+ L   +N 
Sbjct: 458 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA 497

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 1/114 (0%)

Query: 108 SIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLET 167
           S+P  +P N + L L +NQ +   P     +  LK L LGSNQL      +F    +L  
Sbjct: 33  SVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV 92

Query: 168 LDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNK 220
           LDL  NQLT      F  L  LK+L++  N+ T     + +L  L  L ++ N+
Sbjct: 93  LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ 146

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 13/115 (11%)

Query: 91  NLKSVSYLDVSNNNLKDSIPYQLPP-------NLKHLDLSENQFSGTVPYSISQMSELKY 143
           +L ++  L + +N L       LP         L  LDL  NQ +        ++  LK 
Sbjct: 62  SLINLKELYLGSNQLG-----ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116

Query: 144 LNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQ 198
           L +  N+L   L    ++   L  L L +NQL      +F  LSSL   YL  N 
Sbjct: 117 LFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 74.4 bits (183), Expect = 1e-14
 Identities = 39/196 (19%), Positives = 60/196 (30%), Gaps = 44/196 (22%)

Query: 69  SSVTEIKLSGLGLN----------GQLGYQLTNLKSVSYLDVSNNNLKDSIPYQL----- 113
             +   + S +               L   L     +  + +S+N    +    L     
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 114 -PPNLKHLDLSENQFS-------------GTVPYSISQMSELKYLNLGSNQLNGQ----L 155
               L+HL L  N                  V         L+ +  G N+L        
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 156 SDMFQKNEKLETLDLSKNQLTGE-----LPRSFASLSSLKKLYLQNNQFT--GSI---NV 205
           +  FQ +  L T+ + +N +  E     L    A    LK L LQ+N FT  GS      
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239

Query: 206 LGKLP-LDELNVENNK 220
           L   P L EL + +  
Sbjct: 240 LKSWPNLRELGLNDCL 255

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 32/181 (17%), Positives = 61/181 (33%), Gaps = 30/181 (16%)

Query: 89  LTNLKSVSYLDVSNNNLKD------SIPYQLPPNLKHLDLSENQF-----SGTVPYSISQ 137
             N   +  +    N L++      +  +Q    L  + + +N          +   ++ 
Sbjct: 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214

Query: 138 MSELKYLNLGSNQLNGQ----LSDMFQKNEKLETLDLSKNQLTGELPRSFASL------S 187
             ELK L+L  N         L+   +    L  L L+   L+     +           
Sbjct: 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 274

Query: 188 SLKKLYLQNNQFTGS-INVLGKL------PLDELNVENNKFS--GWVPEELKDIAKTGGN 238
            L+ L LQ N+     +  L  +       L  L +  N+FS    V +E++++  T G 
Sbjct: 275 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGR 334

Query: 239 S 239
            
Sbjct: 335 G 335

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 21/136 (15%), Positives = 36/136 (26%), Gaps = 25/136 (18%)

Query: 89  LTNLKSVSYLDVSNNNLKD------SIPYQLPPNLKHLDLSENQFSGTVPYSISQM---- 138
           +    S+    +  + +                ++K + LS N         +S+     
Sbjct: 1   MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 139 SELKYLNLGSNQLN----------GQLSDMFQKNEKLETLDLSKNQLTGELPRSFASL-- 186
            +L+                      L     K  KL T+ LS N               
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 187 --SSLKKLYLQNNQFT 200
             + L+ LYL NN   
Sbjct: 120 KHTPLEHLYLHNNGLG 135

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 13/138 (9%)

Query: 98  LDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLS- 156
             V+  ++   IP  LPP+ + L L E        ++ S +  +  + +     +  L  
Sbjct: 16  FRVTCKDI-QRIP-SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSI---DVTLQQ 70

Query: 157 ---DMFQKNEKLETLDLSKNQLTGELPRS-FASLSSLKKLYLQNNQFT---GSINVLGKL 209
                F    K+  +++   +    +       L  LK L + N           V    
Sbjct: 71  LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTD 130

Query: 210 PLDELNVENNKFSGWVPE 227
               L + +N +   +P 
Sbjct: 131 IFFILEITDNPYMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 15/145 (10%)

Query: 90  TNLKSVSYLDVSNNNLKDSIP----YQLPPNLKHLDLSENQFSGTVP--YSISQMSELKY 143
            NL  V+++++ N      I      +L P LK L +         P    +        
Sbjct: 77  YNLSKVTHIEIRNTRNLTYIDPDALKEL-PLLKFLGIFNTGLK-MFPDLTKVYSTDIFFI 134

Query: 144 LNLGSNQLNGQLS-DMFQK-NEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG 201
           L +  N     +  + FQ    +  TL L  N  T  +     + + L  +YL  N++  
Sbjct: 135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLT 193

Query: 202 SI--NVLGKLP--LDELNVENNKFS 222
            I  +  G +      L+V     +
Sbjct: 194 VIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 33/189 (17%), Positives = 67/189 (35%), Gaps = 24/189 (12%)

Query: 60  HWKGITCSGSSVTEI-----KLSGLGLNG-QLGY----QLTNLKSVSYLDVSNNNLKDSI 109
             +    +   +  I         L L    L        +NL ++S + VS +     +
Sbjct: 12  QEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71

Query: 110 P----YQLPPNLKHLDLSENQFSGTVPYSI-SQMSELKYLNLGSNQLNGQLSDM--FQKN 162
                Y L   + H+++   +    +      ++  LK+L + +  L     D+      
Sbjct: 72  ESHSFYNL-SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYST 129

Query: 163 EKLETLDLSKNQLTGELP-RSFASLSS-LKKLYLQNNQFTGSI--NVLGKLPLDELNVEN 218
           +    L+++ N     +P  +F  L +    L L NN FT S+         LD + +  
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188

Query: 219 NKFSGWVPE 227
           NK+   + +
Sbjct: 189 NKYLTVIDK 197

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 10/115 (8%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQ----LPPNLKHLDLSENQFSGTVPYSISQMSELKYL 144
           + +      L++++N    SIP      L      L L  N F+ +V       ++L  +
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAV 184

Query: 145 NLGSNQLNGQLS-DMFQK-NEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNN 197
            L  N+    +  D F         LD+S+  +T  LP     L  LK+L  +N 
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQ--RANSESFSEIVQNISRIRHTNIAE 467
             ++G G  G+VYRA +  G  +AVK       +      E+  +  +  + ++H NI  
Sbjct: 12  EEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIA 70

Query: 468 LVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           L G C ++ +  L+ ++ R G L+  L 
Sbjct: 71  LRGVCLKEPNLCLVMEFARGGPLNRVLS 98

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 71.9 bits (177), Expect = 3e-14
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
              L E   G +++ ++  G  + VK +    +    S  F+E    +    H N+  ++
Sbjct: 15  LTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVL 73

Query: 470 GFCSE--QGHNILIYDYYRNGSLHEFLH 495
           G C      H  LI  +   GSL+  LH
Sbjct: 74  GACQSPPAPHPTLITHWMPYGSLYNVLH 101

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 70.5 bits (173), Expect = 3e-14
 Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 4/116 (3%)

Query: 108 SIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLET 167
           S+P  +P    +LDL  N           +++ L  L LG N+L    + +F K   L  
Sbjct: 21  SVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80

Query: 168 LDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI--NVLGKLP-LDELNVENNK 220
           L+LS NQL       F  L+ LK+L L  NQ   S+   V  KL  L +L +  N+
Sbjct: 81  LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQ 135

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 63.2 bits (154), Expect = 9e-12
 Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 6/113 (5%)

Query: 91  NLKSVSYLDVSNNNLKDSIP---YQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLG 147
            L S++ L +  N L+ S+P   +    +L +L+LS NQ          ++++LK L L 
Sbjct: 50  ELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108

Query: 148 SNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPR-SFASLSSLKKLYLQNNQF 199
           +NQL      +F K  +L+ L L +NQL   +P   F  L+SL+ ++L +N +
Sbjct: 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPW 160

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 72.0 bits (177), Expect = 3e-14
 Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 29/170 (17%)

Query: 63  GITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDL 122
                     +  L    +   +      L S+  +  +N+++K     Q  PN+++L L
Sbjct: 16  DAFAET---IKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQYLPNVRYLAL 70

Query: 123 SENQFSGTVPYSIS---QMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGEL 179
             N+        IS   +++ L YL L  NQL    + +F K   L+ L L +NQL    
Sbjct: 71  GGNKLH-----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125

Query: 180 PRSFASLSSLKKLYLQNNQFTGSINVLGKLP---------LDELNVENNK 220
              F  L++L  L L +NQ          LP         L EL++  N+
Sbjct: 126 DGVFDKLTNLTYLNLAHNQLQ-------SLPKGVFDKLTNLTELDLSYNQ 168

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 12/158 (7%)

Query: 69  SSVTEIKLSGLGLNGQLGY-QLTNLKSVSYLDVSNNNLKDSIP-YQLPPNLKHLDLSENQ 126
           +S+ +I  +   +    G   L N++   YL +  N L   I   +   NL +L L+ NQ
Sbjct: 41  NSIDQIIANNSDIKSVQGIQYLPNVR---YLALGGNKLH-DISALKELTNLTYLILTGNQ 96

Query: 127 FSGTVPYSI-SQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFAS 185
              ++P  +  +++ LK L L  NQL      +F K   L  L+L+ NQL       F  
Sbjct: 97  LQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK 155

Query: 186 LSSLKKLYLQNNQFTGSI--NVLGKLP-LDELNVENNK 220
           L++L +L L  NQ   S+   V  KL  L +L +  N+
Sbjct: 156 LTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQ 192

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 9/115 (7%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIP---YQLPPNLKHLDLSENQFSGTVPYSISQMSELKYL 144
           +LTNLK    L +  N L+ S+P   +    NL +L+L+ NQ          +++ L  L
Sbjct: 107 KLTNLK---ELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162

Query: 145 NLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPR-SFASLSSLKKLYLQNNQ 198
           +L  NQL      +F K  +L+ L L +NQL   +P   F  L+SL+ ++L +N 
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 12/130 (9%)

Query: 93  KSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLN 152
           +++    VS    +   P          +L +   +     + ++++ +  +   ++ + 
Sbjct: 1   ETI---TVSTPIKQ-IFPDDAFAETIKANLKKKSVT-DAV-TQNELNSIDQIIANNSDI- 53

Query: 153 GQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG-SINVLGKLP- 210
            +     Q    +  L L  N+L  ++  +   L++L  L L  NQ       V  KL  
Sbjct: 54  -KSVQGIQYLPNVRYLALGGNKLH-DIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTN 110

Query: 211 LDELNVENNK 220
           L EL +  N+
Sbjct: 111 LKELVLVENQ 120

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.8 bits (176), Expect = 7e-14
 Identities = 29/140 (20%), Positives = 45/140 (32%), Gaps = 10/140 (7%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIP---YQLPPNLKHLDLSENQFSGTVPYSISQ--MSELKY 143
             NL ++ YL +SN  +K  +P            LD+ +N    T+  +       E   
Sbjct: 100 FQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158

Query: 144 LNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI 203
           L L  N +    +  F   +  E      N L       F   S    L +   +   S+
Sbjct: 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SL 217

Query: 204 --NVLGKLP-LDELNVENNK 220
               L  L  L   +  N K
Sbjct: 218 PSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.9 bits (171), Expect = 3e-13
 Identities = 29/202 (14%), Positives = 61/202 (30%), Gaps = 35/202 (17%)

Query: 65  TCSGSSVTEIKLSGLGLNGQLGYQLTNL-----KSVSYLDVSNNNLKDSIP----YQLPP 115
            CS             +        T +     ++   L      L+  I          
Sbjct: 8   HCSNRVFL---CQESKV--------TEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFG- 54

Query: 116 NLKHLDLSENQFSGTVPYSI-SQMSELKYLNL-GSNQLNGQLSDMFQKNEKLETLDLSKN 173
           +L+ +++S+N     +   + S + +L  + +  +N L     + FQ    L+ L +S  
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 174 QLTGELPRSFASLSSLKKLYLQNNQFTGSI--NVLGKLP--LDELNVENNKFSGWVPE-- 227
            +                L +Q+N    +I  N    L      L +  N     +    
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSA 173

Query: 228 ----ELKDIAKTGGNSWSSSPA 245
               +L ++  +  N+    P 
Sbjct: 174 FNGTQLDELNLSDNNNLEELPN 195

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.2 bits (164), Expect = 2e-12
 Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 8/135 (5%)

Query: 90  TNLKSVSYLDVSNNNLKDSIP----YQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLN 145
            +      LD+ +N    +I       L      L L++N        + +     +   
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184

Query: 146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINV 205
             +N L    +D+F        LD+S+ ++         +L  L+     N +    +  
Sbjct: 185 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 241

Query: 206 LGKLP-LDELNVENN 219
           L KL  L E ++   
Sbjct: 242 LEKLVALMEASLTYP 256

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 410 GRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANS-----ESFSEIVQNISRIRHT 463
            + +G+G  G V++ +   D  V+A+K +     +         + F   V  +S + H 
Sbjct: 24  EKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHP 83

Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           NI +L G         ++ ++   G L+  L 
Sbjct: 84  NIVKLYGLMHNPPR--MVMEFVPCGDLYHRLL 113

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
           G+ +G G+ G VY+ K+  G V AVK ++ +       ++F   V  + + RH NI   +
Sbjct: 29  GQRIGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFM 86

Query: 470 GFCSEQGHNILIYDYYRNGSLHEFLH 495
           G+ +     I +  +    SL+  LH
Sbjct: 87  GYSTAPQLAI-VTQWCEGSSLYHHLH 111

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 98  LDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSD 157
           + ++   ++ +  Y      + LDL   +    +    + + +   ++   N++  +L  
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDG 59

Query: 158 MFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT--GSINVLGKLP-LDEL 214
            F    +L+TL ++ N++         +L  L +L L NN     G ++ L  L  L  L
Sbjct: 60  -FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 118

Query: 215 NVENN 219
            +  N
Sbjct: 119 CILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 63.1 bits (154), Expect = 5e-12
 Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 24/167 (14%)

Query: 88  QLTNLKSVSYLDVSNNNLKD--SIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLN 145
           Q TN      LD+    +    ++   L      +D S+N+    +      +  LK L 
Sbjct: 14  QYTNAVRDRELDLRGYKIPVIENLGATLD-QFDAIDFSDNEIR-KLDG-FPLLRRLKTLL 70

Query: 146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLT--GELPRSFASLSSLKKLYLQNNQFTGSI 203
           + +N++      + Q    L  L L+ N L   G+L    ASL SL  L +  N  T   
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTNKK 129

Query: 204 N----VLGKLP----LDELNVE-------NNKFSGWVPEEL-KDIAK 234
           +    V+ K+P    LD   V+          F G    +L KDIA+
Sbjct: 130 HYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIAR 176

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 66.9 bits (164), Expect = 4e-13
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 6/107 (5%)

Query: 108 SIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLET 167
           S+P  +P +   L+L  N+          ++++L  L+L  NQ+      +F K  KL  
Sbjct: 21  SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI 80

Query: 168 LDLSKNQLTGELPRS-FASLSSLKKLYLQNNQFT----GSINVLGKL 209
           L L +N+L   LP   F  L+ LK+L L  NQ      G  + L  L
Sbjct: 81  LYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL 126

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 60.4 bits (147), Expect = 6e-11
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 14/110 (12%)

Query: 97  YLDVSNNNLKDSIPYQLPP-------NLKHLDLSENQFSGTVPYSI-SQMSELKYLNLGS 148
            L++ +N L+      LP         L  L LS+NQ   ++P  +  ++++L  L L  
Sbjct: 32  RLELESNKLQ-----SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHE 85

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQ 198
           N+L    + +F K  +L+ L L  NQL       F  L+SL+K++L  N 
Sbjct: 86  NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 131 VPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLK 190
           VP  I   S    L L SN+L      +F K  +L  L LS+NQ+       F  L+ L 
Sbjct: 22  VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79

Query: 191 KLYLQNNQFTGSI--NVLGKLP-LDELNVENNK 220
            LYL  N+   S+   V  KL  L EL ++ N+
Sbjct: 80  ILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQ 111

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 7/86 (8%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
             ++G G  G V +AK+   K +A+K+I+S     +  ++F   ++ +SR+ H NI +L 
Sbjct: 13  EEVVGRGAFGVVCKAKW-RAKDVAIKQIESE----SERKAFIVELRQLSRVNHPNIVKLY 67

Query: 470 GFCSEQGHNILIYDYYRNGSLHEFLH 495
           G C       L+ +Y   GSL+  LH
Sbjct: 68  GACLN--PVCLVMEYAEGGSLYNVLH 91

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 68.2 bits (166), Expect = 1e-12
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 5/108 (4%)

Query: 96  SYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVP-YSISQMSELKYLNLGSNQLN 152
           S L  + +       + LP   NL  L +   Q    +    +  + EL+ L +  + L 
Sbjct: 11  SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 153 GQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT 200
               D F    +L  L+LS N L     ++   L SL++L L  N   
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 6/112 (5%)

Query: 112 QLPPNLKHLDLSENQFS-GTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDL 170
           + P ++K L L  ++ + G +     +  EL++L+  +  L   +++   K  KL+ L+L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLEL 71

Query: 171 SKNQLTGELPRSFASLSSLKKLYLQNNQFT--GSINVLGKLP-LDELNVENN 219
           S N+++G L        +L  L L  N+     +I  L KL  L  L++ N 
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 19/114 (16%)

Query: 115 PNLKHLDLSENQFSGTVPYSIS---QMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLS 171
             L+ L       +     SI+   ++++LK L L  N+++G L  + +K   L  L+LS
Sbjct: 42  EELEFLSTINVGLT-----SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96

Query: 172 KNQLT--GELPRSFASLSSLKKLYLQNNQFTGSIN----VLGKLP----LDELN 215
            N++     +      L +LK L L N + T   +    V   LP    LD  +
Sbjct: 97  GNKIKDLSTI-EPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 108 SIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLET 167
           S+P  +P   + L L +NQ +   P    ++++L  L+L +NQL    + +F K  +L  
Sbjct: 23  SVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82

Query: 168 LDLSKNQLTGELPR-SFASLSSLKKLYLQNN 197
           L L+ NQL   +PR +F +L SL  ++L NN
Sbjct: 83  LSLNDNQLKS-IPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 51.1 bits (123), Expect = 8e-08
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 116 NLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQL 175
           +   +D S    + +VP  I   +  + L L  NQ+      +F +  +L  LDL  NQL
Sbjct: 10  SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66

Query: 176 TGELPRSFASLSSLKKLYLQNNQ 198
           T      F  L+ L +L L +NQ
Sbjct: 67  TVLPAGVFDKLTQLTQLSLNDNQ 89

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 166 ETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI--NVLGKLP-LDELNVENNK 220
           + L L  NQ+T   P  F  L+ L +L L NNQ T  +   V  KL  L +L++ +N+
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQ 89

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 108 SIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLET 167
           S+P  +P + + L L+ NQ +   P     +  L+ L   SN+L    + +F K  +L  
Sbjct: 26  SVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85

Query: 168 LDLSKNQLTGELPR-SFASLSSLKKLYLQNN 197
           LDL+ N L   +PR +F +L SL  +YL NN
Sbjct: 86  LDLNDNHLKS-IPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 116 NLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQL 175
           +   ++    + + +VP  I   ++ + L L +NQ+      +F     L+ L  + N+L
Sbjct: 13  DQTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL 69

Query: 176 TGELPRSFASLSSLKKLYLQNNQ 198
           T      F  L+ L +L L +N 
Sbjct: 70  TAIPTGVFDKLTQLTQLDLNDNH 92

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 166 ETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI--NVLGKLP-LDELNVENNK 220
           + L L+ NQ+T   P  F  L +L++LY  +N+ T +I   V  KL  L +L++ +N 
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNH 92

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 6/121 (4%)

Query: 103 NNLKDSIPYQLPPNLKHLDLSENQFS-GTVPYSISQMSELKYLNLGSNQLNGQLSDMFQK 161
             +   +  + P  ++ L L   + + G +    ++   L++L+L +  L   +S+   K
Sbjct: 12  RRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPK 69

Query: 162 NEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT--GSINVLGKLP-LDELNVEN 218
             KL+ L+LS+N++ G L      L +L  L L  N+     ++  L KL  L  L++ N
Sbjct: 70  LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

Query: 219 N 219
            
Sbjct: 130 C 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 13/115 (11%)

Query: 115 PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQ 174
            NL+ L L       +V  ++ ++ +LK L L  N++ G L  + +K   L  L+LS N+
Sbjct: 49  VNLEFLSLINVGLI-SVS-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106

Query: 175 LT--GELPRSFASLSSLKKLYLQNNQFTGSIN----VLGKLP----LDELNVENN 219
           L     L      L  LK L L N + T   +    V   LP    LD  + E+ 
Sbjct: 107 LKDISTL-EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 36/181 (19%), Positives = 63/181 (34%), Gaps = 27/181 (14%)

Query: 69  SSVTEIKLSGLGLNGQ-LGYQLTNLKSVSYLDVSNNNLKD----SIPYQLP--PNLKHLD 121
             +  + +    L+       L  L+    + + +  L +     I   L   P L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 122 LSENQFSGTVPYSISQM-----SELKYLNLGSNQLNGQ----LSDMFQKNEKLETLDLSK 172
           L  N+      + + Q       +++ L+L +  L G     LS   +    L+ L LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 173 NQLTGELPRSFASL-----SSLKKLYLQNNQFTGS-----INVLGKLP-LDELNVENNKF 221
           N L     +            L+KL L+    + +      +VL   P   EL V NN  
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 222 S 222
           +
Sbjct: 183 N 183

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.5 bits (163), Expect = 7e-12
 Identities = 39/192 (20%), Positives = 74/192 (38%), Gaps = 31/192 (16%)

Query: 62  KGITCSGSSVTEIKLSGLGLNGQ----LGYQLTNLKSVSYLDVSNNNLKDS----IPYQL 113
           +G+      + +++L    L+      L   L        L VSNN++ ++    +   L
Sbjct: 135 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGL 194

Query: 114 PPN---LKHLDLSENQFSGTVPYSISQM----SELKYLNLGSNQLNGQ----LSDMFQK- 161
             +   L+ L L     +      +  +    + L+ L LGSN+L       L       
Sbjct: 195 KDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP 254

Query: 162 NEKLETLDLSKNQLTGE----LPRSFASLSSLKKLYLQNNQFTGS-INVLGKL------P 210
           + +L TL + +  +T +    L R   +  SLK+L L  N+       +L +        
Sbjct: 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314

Query: 211 LDELNVENNKFS 222
           L+ L V++  F+
Sbjct: 315 LESLWVKSCSFT 326

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.1 bits (149), Expect = 4e-10
 Identities = 41/220 (18%), Positives = 69/220 (31%), Gaps = 59/220 (26%)

Query: 62  KGITCSGSSVTEIKLSGLGLNGQ----LGYQLTNLKSVSYLDVSNNNLKDS-----IPYQ 112
           +G+  S   +  +KL   G+       L   + +  S+  L + +N L D       P  
Sbjct: 192 QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGL 251

Query: 113 LPPN------------------------------LKHLDLSENQFSGTVPYSISQM---- 138
           L P+                              LK L L+ N+        + +     
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP 311

Query: 139 -SELKYLNLGSNQLNGQ----LSDMFQKNEKLETLDLSKNQLTGELPRSFA-----SLSS 188
             +L+ L + S           S +  +N  L  L +S N+L     R          S 
Sbjct: 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371

Query: 189 LKKLYLQNNQFTGS-----INVLGKLP-LDELNVENNKFS 222
           L+ L+L +   + S        L     L EL++ NN   
Sbjct: 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 34/160 (21%), Positives = 52/160 (32%), Gaps = 31/160 (19%)

Query: 69  SSVTEIKLSG--LGLNG------QLGYQLTNLKSVSYLDVSNNNLKD------SIPYQLP 114
            S+ E+ L+G  LG  G       L      L+S   L V + +         S      
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLES---LWVKSCSFTAACCSHFSSVLAQN 340

Query: 115 PNLKHLDLSENQFSGTVPYSISQM-----SELKYLNLGSNQLNGQ----LSDMFQKNEKL 165
             L  L +S N+        + Q      S L+ L L    ++      L+     N  L
Sbjct: 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400

Query: 166 ETLDLSKNQLTGELPRSFASL-----SSLKKLYLQNNQFT 200
             LDLS N L                  L++L L +  ++
Sbjct: 401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 20/124 (16%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQL-------PPNLKHLDLSENQFSGTVPYSISQM--- 138
           L   + +  L +SNN L+D+   +L          L+ L L++   S +   S++     
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396

Query: 139 -SELKYLNLGSNQLNGQ----LSDMFQKNE-KLETLDLSKNQLTGELPRSFASL----SS 188
              L+ L+L +N L       L +  ++    LE L L     + E+     +L     S
Sbjct: 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPS 456

Query: 189 LKKL 192
           L+ +
Sbjct: 457 LRVI 460

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 66.3 bits (162), Expect = 5e-12
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 8/90 (8%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
              +G+G  G V+R K+  G+ +AVK   S   +    E+  EI      +RH NI   +
Sbjct: 47  QESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREA--EI-YQTVMLRHENILGFI 102

Query: 470 GFCSEQGHNI----LIYDYYRNGSLHEFLH 495
              ++         L+ DY+ +GSL ++L+
Sbjct: 103 AADNKDNGTWTQLWLVSDYHEHGSLFDYLN 132

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 66.3 bits (162), Expect = 6e-12
 Identities = 30/181 (16%), Positives = 62/181 (34%), Gaps = 27/181 (14%)

Query: 69  SSVTEIKLSG--LGLNG--QLGYQL-TNLKSVSYLDVSNNNLKDSIPYQLPP---NLKHL 120
           SS+ ++ L+G  +       +   L +   ++  +++++  L  +    L P     + L
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL 131

Query: 121 DLSENQFSGTVPYSISQM-----SELKYLNLGSNQLNGQ----LSDMFQKNEKLETLDLS 171
            L  N         +  +      ++  L L +N L       L +    N  +  L L 
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191

Query: 172 KNQLTGE----LPRSFASLSSLKKLYLQNNQFTGS-----INVLGKLP-LDELNVENNKF 221
              L  E    L         L++L +  N    +          + P L+ L++  N+ 
Sbjct: 192 HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251

Query: 222 S 222
           S
Sbjct: 252 S 252

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 17/126 (13%)

Query: 92  LKSVSYLDVSNNNLKDS----IPYQLPPN---LKHLDLSENQFSGTVPYSISQM-SELKY 143
           L S+  L+++   +       +   L      L  ++L+  Q       ++  +    + 
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130

Query: 144 LNLGSNQLNGQ----LSDMFQKNE-KLETLDLSKNQLTGE----LPRSFASLSSLKKLYL 194
           L L  N L  +    L D+   ++ ++ TL LS N LT      L    A  +S+  L L
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL 190

Query: 195 QNNQFT 200
            +    
Sbjct: 191 LHTGLG 196

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 63.2 bits (154), Expect = 8e-12
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 9/146 (6%)

Query: 69  SSVTEIKLSGLGLNG--QLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQ 126
           +   +++L    +    ++   L+ LK+  +L +S NN++         NL+ L L  N 
Sbjct: 23  TEAEKVELH-GMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNL 81

Query: 127 FSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLT--GELPRSFA 184
               +    +    L+ L +  NQ+   LS   +K   L  L +S N++T  GE+    A
Sbjct: 82  IK-KIENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGEI-DKLA 137

Query: 185 SLSSLKKLYLQNNQFTGSINVLGKLP 210
           +L  L+ L L  N             
Sbjct: 138 ALDKLEDLLLAGNPLYNDYKENNATS 163

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 29/163 (17%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQL-------PPNLKHLDLSENQFSGTVPYSISQM--- 138
            +    V+ LD+S NNL      +L       P ++  L+LS N         + Q+   
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 139 --SELKYLNLGSNQLNGQ----LSDMFQK-NEKLETLDLSKNQLTGELPRSFASL----- 186
             + +  LNL  N L+ +    L          +  LDL  N  + +    F        
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 187 SSLKKLYLQNNQFTGS-----INVLGKLP--LDELNVENNKFS 222
           +S+  L L+ N          I +L  +P  ++ LN+  N  +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 31/159 (19%), Positives = 62/159 (38%), Gaps = 28/159 (17%)

Query: 69  SSVTEIKLSG--LGLNG--QLGYQLTNL-KSVSYLDVSNNNLKD-------SIPYQLPPN 116
           +S+T + L G  LG+    +L   L  +  +V+ L++  NNL              +P +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 117 LKHLDLSENQFSGTVPYSISQM-----SELKYLNLGSNQLNGQ----LSDMFQKNEKLET 167
           +  LDLS N         ++ +     + +  LNL  N L+G     L  +    + L+T
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 168 LDLSKNQLTG-------ELPRSFASLSSLKKLYLQNNQF 199
           + L  + +          L  +F ++  +  +     + 
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.6 bits (129), Expect = 6e-08
 Identities = 30/194 (15%), Positives = 62/194 (31%), Gaps = 35/194 (18%)

Query: 62  KGITCSGSSVTEIKLS--GLGLNG--QLGYQLTNL-KSVSYLDVSNNNLKD-------SI 109
           + +    ++V  + L    L      +L   L ++  SV+ LD+S N L          I
Sbjct: 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI 219

Query: 110 PYQLPPNLKHLDLSENQFSGTVPYSISQMSE----LKYLNLGSNQLNGQ-------LSDM 158
              +P ++  L+L  N   G    ++  + +    L+ + L  + +          L   
Sbjct: 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA 279

Query: 159 FQKNEKLETLDLSKNQLTGELPRSFASL-----SSLKKLYLQNNQFT-----GSINVLGK 208
           F   +K+  +D +  ++        ++L            L N          +      
Sbjct: 280 FPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLN 339

Query: 209 LP--LDELNVENNK 220
           +P  L E       
Sbjct: 340 IPDELRESIQTCKP 353

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 8/90 (8%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
            + +G+G  G V+  K+  G+ +AVK   ++       E+  EI Q    +RH NI   +
Sbjct: 42  VKQIGKGRYGEVWMGKW-RGEKVAVKVFFTTEEASWFRET--EIYQ-TVLMRHENILGFI 97

Query: 470 GFCSEQGHNI----LIYDYYRNGSLHEFLH 495
               +   +     LI DY+ NGSL+++L 
Sbjct: 98  AADIKGTGSWTQLYLITDYHENGSLYDYLK 127

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
              +G+G  G V+R  +  G+ +AVK   S   +    E+  E+  N   +RH NI   +
Sbjct: 13  LECVGKGRYGEVWRGSW-QGENVAVKIFSSRDEKSWFRET--EL-YNTVMLRHENILGFI 68

Query: 470 GFCSEQGHNI----LIYDYYRNGSLHEFLH 495
                  H+     LI  Y+  GSL+++L 
Sbjct: 69  ASDMTSRHSSTQLWLITHYHEMGSLYDYLQ 98

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 410 GRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAEL 468
           G +LG+G  G+  +  +   G+V+ +K++    F      +F + V+ +  + H N+ + 
Sbjct: 15  GEVLGKGCFGQAIKVTHRETGEVMVMKELI--RFDEETQRTFLKEVKVMRCLEHPNVLKF 72

Query: 469 VGFCSEQGHNILIYDYYRNGSLHEFLH 495
           +G   +      I +Y + G+L   + 
Sbjct: 73  IGVLYKDKRLNFITEYIKGGTLRGIIK 99

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 58.8 bits (143), Expect = 9e-10
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 410 GRLLGEGTIGRVYRAKYPDG-------KVLAVKKIDSSHFQRANSESFSEIVQNISRIRH 462
           G+ LGEG  G+V +A             V AVK +  +       +  SE    + ++ H
Sbjct: 28  GKTLGEGEFGKVVKATAFHLKGRAGYTTV-AVKMLKENASPSELRDLLSEF-NVLKQVNH 85

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            ++ +L G CS+ G  +LI +Y + GSL  FL
Sbjct: 86  PHVIKLYGACSQDGPLLLIVEYAKYGSLRGFL 117

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 410 GRLLGEGTIGRVYRAKYPD-----GKVL-AVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
            R +GEG  GRV++A+ P         + AVK +         ++   E    ++   + 
Sbjct: 52  VRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREA-ALMAEFDNP 110

Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           NI +L+G C+      L+++Y   G L+EFL
Sbjct: 111 NIVKLLGVCAVGKPMCLLFEYMAYGDLNEFL 141

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 56.8 bits (138), Expect = 3e-09
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
            + +G+G  G V    Y   KV AVK I +     A +++F      ++++RH+N+ +L+
Sbjct: 26  LQTIGKGEFGDVMLGDYRGNKV-AVKCIKND----ATAQAFLAEASVMTQLRHSNLVQLL 80

Query: 470 GFCSEQGHNILI-YDYYRNGSLHEFL 494
           G   E+   + I  +Y   GSL ++L
Sbjct: 81  GVIVEEKGGLYIVTEYMAKGSLVDYL 106

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 57.3 bits (137), Expect = 4e-09
 Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 20/152 (13%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQL----PPNLKHLDL-- 122
            ++  +    +     L        ++  L++ +  L DS+   +     PNL+ L L  
Sbjct: 169 DAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228

Query: 123 -SENQFSGTVPYSIS------QMSELKYLNLGSNQLNGQLSDMF---QKNEKLETLDLSK 172
             E+                 +   LK+L +   +    + +MF       +LET+D+S 
Sbjct: 229 GVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288

Query: 173 NQLTGE----LPRSFASLSSLKKLYLQNNQFT 200
             LT E    L      +  LK + ++ N  +
Sbjct: 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 54.6 bits (130), Expect = 3e-08
 Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 15/113 (13%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQLP--------PNLKHLDLSENQFSGTVPYSISQ-- 137
            L NL+ +       +   D               PNLK L + + +    V     +  
Sbjct: 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD 276

Query: 138 -MSELKYLNLGSNQLNG----QLSDMFQKNEKLETLDLSKNQLTGELPRSFAS 185
            + +L+ +++ +  L       L D   K + L+ +++  N L+ E+ +    
Sbjct: 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 21/134 (15%)

Query: 89  LTNLKSVSYLDVSN-NNLKD----SIPYQLPPN--LKHLDLSENQFSGTVPYSISQM--- 138
             N   +  ++++N  N+      +    L  N  +K   +   + +  V +++++M   
Sbjct: 32  QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV 91

Query: 139 -SELKYLNLGSNQLNGQ----LSDMFQKNEKLETLDLS--KNQLTGELPRSFASL----S 187
            + LK LN+ SN ++G     L +  Q N  L  L +      L   +    A++    +
Sbjct: 92  NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT 151

Query: 188 SLKKLYLQNNQFTG 201
           +L K      Q   
Sbjct: 152 TLLKFGYHFTQQGP 165

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 23/132 (17%)

Query: 69  SSVTEIKLSGLGLNGQLGYQ-----LTNLKSVSYLDVSNNNLKDSIPYQ----LPPN--L 117
             + E+ L+ +        +     L     V    +      D + +     L  N  L
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95

Query: 118 KHLDLSENQFSGTVPYSISQM----SELKYLNLGSNQLNG-------QLSDMFQKNEKLE 166
           K L++  N  SG+   ++ +     + L  L +  NQ          ++++M +KN  L 
Sbjct: 96  KSLNVESNFISGSGILALVEALQSNTSLIELRI-DNQSQPLGNNVEMEIANMLEKNTTLL 154

Query: 167 TLDLSKNQLTGE 178
                  Q    
Sbjct: 155 KFGYHFTQQGPR 166

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 10/95 (10%)

Query: 410 GRLLGEGTIGRVYRAKY--PDGKVL--AVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
           GR+LG+G  G V  A+    DG  +  AVK + +     ++ E F      +    H ++
Sbjct: 28  GRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHV 87

Query: 466 AELVGFCSEQGHNI------LIYDYYRNGSLHEFL 494
           A+LVG               +I  + ++G LH FL
Sbjct: 88  AKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFL 122

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 410 GRLLGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
            R LGEG  G+V   +Y       G+ +AVK +         ++   EI + +  + H N
Sbjct: 26  IRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEI-EILRNLYHEN 84

Query: 465 IAELVGFCSEQGHN--ILIYDYYRNGSLHEFL 494
           I +  G C+E G N   LI ++  +GSL E+L
Sbjct: 85  IVKYKGICTEDGGNGIKLIMEFLPSGSLKEYL 116

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 410 GRLLGEGTIGRVYRAKY-------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRH 462
            R LG+G+ G VY           P+ +V A+K ++ +   R   E  +E    +     
Sbjct: 30  SRELGQGSFGMVYEGVAKGVVKDEPETRV-AIKTVNEAASMRERIEFLNEA-SVMKEFNC 87

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            ++  L+G  S+    ++I +    G L  +L
Sbjct: 88  HHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 119

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 406 NFATGRLLGEGTIGRVYRAK-YPDGKVLAVKKIDSSHFQRANSES--FSEIVQNISRIRH 462
           +F  G LLG+G+   VYRA+    G  +A+K ID     +A       +E+ +   +++H
Sbjct: 12  DFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEV-KIHCQLKH 70

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
            +I EL  +  +  +  L+ +   NG ++ +L 
Sbjct: 71  PSILELYNYFEDSNYVYLVLEMCHNGEMNRYLK 103

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 8/92 (8%)

Query: 410 GRLLGEGTIGRVYRAKY---PDGKVL--AVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
            R LGEG  G+V    Y    DG     AVK + +    +  S    EI   +  + H +
Sbjct: 36  IRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEI-DILRTLYHEH 94

Query: 465 IAELVGFCSEQGHN--ILIYDYYRNGSLHEFL 494
           I +  G C + G     L+ +Y   GSL ++L
Sbjct: 95  IIKYKGCCEDAGAASLQLVMEYVPLGSLRDYL 126

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 10/93 (10%)

Query: 410 GRLLGEGTIGRVYRAKYPDG-------KVLAVKKIDSSHFQRANSESFSEIVQNISRI-R 461
           G+ LG G  G+V  A             V AVK +  S          SE+ + +S +  
Sbjct: 28  GKTLGAGAFGKVVEATAYGLIKSDAAMTV-AVKMLKPSAHLTEREALMSEL-KVLSYLGN 85

Query: 462 HTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           H NI  L+G C+  G  ++I +Y   G L  FL
Sbjct: 86  HMNIVNLLGACTIGGPTLVITEYCCYGDLLNFL 118

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 406 NFATGRLLGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISR 459
               G+ LG G  G+V  A           + +AVK +        +    SE+   I  
Sbjct: 23  RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHI 82

Query: 460 IRHTNIAELVGFCSEQGHNI-LIYDYYRNGSLHEFLH 495
             H N+  L+G C++ G  + +I ++ + G+L  +L 
Sbjct: 83  GHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLR 119

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 9/92 (9%)

Query: 410 GRLLGEGTIGRVYRAKYPDG-------KVLAVKKIDSSHFQRANSESFSEIVQNISRIRH 462
            R LG G  G VY  +           +V AVK +     ++   +   E    IS+  H
Sbjct: 35  IRGLGHGAFGEVYEGQVSGMPNDPSPLQV-AVKTLPEVCSEQDELDFLME-ALIISKFNH 92

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            NI   +G   +     ++ +    G L  FL
Sbjct: 93  QNIVRCIGVSLQSLPRFILMELMAGGDLKSFL 124

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSES--FSEIVQNISRIRH 462
            +  GR LG+G   + +     D  +V A K +  S   + +       EI      + H
Sbjct: 42  RYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEI-SIHRSLAH 100

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            ++    GF  +     ++ +  R  SL E  
Sbjct: 101 QHVVGFHGFFEDNDFVFVVLELCRRRSLLELH 132

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 11/92 (11%)

Query: 410 GRLLGEGTIGRVYRAKY--PDGKVL-AVK--KIDSSHFQRAN--SESFSEIVQNISRIRH 462
             ++GEG  G+V +A+      ++  A+K  K  +S     +   E   E++  +    H
Sbjct: 30  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGEL--EVLCKLGH--H 85

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            NI  L+G C  +G+  L  +Y  +G+L +FL
Sbjct: 86  PNIINLLGACEHRGYLYLAIEYAPHGNLLDFL 117

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 7/91 (7%)

Query: 410 GRLLGEGTIGRVYRAKYPDGK------VLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
            R LG G  G VY  +            +AVK +     ++   +   E    IS+  H 
Sbjct: 76  IRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLME-ALIISKFNHQ 134

Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           NI   +G   +     ++ +    G L  FL
Sbjct: 135 NIVRCIGVSLQSLPRFILLELMAGGDLKSFL 165

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSES--FSEIVQNISRIRH 462
            +  GR LG+G   + +     D  +V A K +  S   + +       EI      + H
Sbjct: 16  RYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEI-SIHRSLAH 74

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            ++    GF  +     ++ +  R  SL E  
Sbjct: 75  QHVVGFHGFFEDNDFVFVVLELCRRRSLLELH 106

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 410 GRLLGEGTIGRVYRAKYPDG-------KVLAVKKIDSSHFQRANSESFSEIVQNISRI-R 461
           G+ LG G  G+V  A            KV AVK + S+          SE+ + +S + +
Sbjct: 51  GKTLGAGAFGKVVEATAFGLGKEDAVLKV-AVKMLKSTAHADEKEALMSEL-KIMSHLGQ 108

Query: 462 HTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           H NI  L+G C+  G  ++I +Y   G L  FL
Sbjct: 109 HENIVNLLGACTHGGPVLVITEYCCYGDLLNFL 141

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 410 GRLLGEGTIGRVYRAKY--PDGKVL--AVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
             ++G G  G VY       DGK +  AVK ++        S+  +E    +    H N+
Sbjct: 30  NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTE-GIIMKDFSHPNV 88

Query: 466 AELVGFCSEQGHNIL-IYDYYRNGSLHEFL 494
             L+G C     + L +  Y ++G L  F+
Sbjct: 89  LSLLGICLRSEGSPLVVLPYMKHGDLRNFI 118

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 11/93 (11%)

Query: 410 GRLLGEGTIGRVYRAKY----PDGKVL--AVK--KIDSSHFQRANSESFSEIVQNISRIR 461
              LGE   G+VY+       P  +    A+K  K  +    R     F       +R++
Sbjct: 14  MEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREE---FRHEAMLRARLQ 70

Query: 462 HTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           H N+  L+G  ++     +I+ Y  +G LHEFL
Sbjct: 71  HPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFL 103

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 12/95 (12%)

Query: 410 GRLLGEGTIGRVYRAKYPDG---------KVLAVKKIDSSHFQRANSESFSEIVQNISRI 460
           G+ LGEG  G+V  A+              V AVK +     ++  S+  SE+ + +  I
Sbjct: 86  GKPLGEGCFGQVVMAEAVGIDKDKPKEAVTV-AVKMLKDDATEKDLSDLVSEM-EMMKMI 143

Query: 461 -RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            +H NI  L+G C++ G   +I +Y   G+L E+L
Sbjct: 144 GKHKNIINLLGACTQDGPLYVIVEYASKGNLREYL 178

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 10/97 (10%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPDGKVL--------AVKKIDSSHFQRANSESFSEIVQNI 457
           +      LG+GT  ++++    +             +K +D +H  R  SESF E    +
Sbjct: 9   DLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAH--RNYSESFFEAASMM 66

Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           S++ H ++    G C     NIL+ ++ + GSL  +L
Sbjct: 67  SKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYL 103

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVL--------AVKKIDSSHFQRANSESFSEIVQNISRIR 461
           G+ LGEG  G+V  A+               AVK +     ++  S+  SE+       +
Sbjct: 40  GKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK 99

Query: 462 HTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           H NI  L+G C++ G   +I +Y   G+L E+L
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYL 132

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 410 GRLLGEGTIGRVYRAKYPD-----GKVL-AVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
            R LGEG  G+V+ A+  +      K+L AVK + D +   R +   F    + ++ ++H
Sbjct: 20  KRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKD---FQREAELLTNLQH 76

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            +I +  G C +    I++++Y ++G L++FL
Sbjct: 77  EHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFL 108

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSES--FSEI-VQNISRIR 461
           +F  GR LG+G  G VY A+      +LA+K +  +  ++A  E     E+ +Q  S +R
Sbjct: 10  DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQ--SHLR 67

Query: 462 HTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           H NI  L G+  +     LI +Y   G+++  L
Sbjct: 68  HPNILRLYGYFHDATRVYLILEYAPLGTVYREL 100

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 410 GRLLGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSE--IVQNISRIR 461
           G+ LG G  G+V  A           + +AVK +        +    SE  I+ +I    
Sbjct: 32  GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG--H 89

Query: 462 HTNIAELVGFCSEQGHNI-LIYDYYRNGSLHEFL 494
           H N+  L+G C++ G  + +I ++ + G+L  +L
Sbjct: 90  HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYL 123

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVK--KIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
            + +G G  G V+   + +   +A+K  +  +      + E F E  + + ++ H  + +
Sbjct: 13  VQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-----SEEDFIEEAEVMMKLSHPKLVQ 67

Query: 468 LVGFCSEQGHNILIYDYYRNGSLHEFL 494
           L G C EQ    L+ ++  +G L ++L
Sbjct: 68  LYGVCLEQAPICLVTEFMEHGCLSDYL 94

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
            + +G+G  G V    Y   KV AVK I +     A +++F      ++++RH+N+ +L+
Sbjct: 198 LQTIGKGEFGDVMLGDYRGNKV-AVKCIKND----ATAQAFLAEASVMTQLRHSNLVQLL 252

Query: 470 GFCSEQGHNI-LIYDYYRNGSLHEFL 494
           G   E+   + ++ +Y   GSL ++L
Sbjct: 253 GVIVEEKGGLYIVTEYMAKGSLVDYL 278

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 12/94 (12%)

Query: 410 GRLLGEGTIGRVYRAKYPDG-------KVLAVKKIDSSHFQRANSESFSE--IVQNISRI 460
           G++LG G  G+V  A            +V AVK +             SE  ++  +   
Sbjct: 50  GKVLGSGAFGKVMNATAYGISKTGVSIQV-AVKMLKEKADSSEREALMSELKMMTQLGS- 107

Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            H NI  L+G C+  G   LI++Y   G L  +L
Sbjct: 108 -HENIVNLLGACTLSGPIYLIFEYCCYGDLLNYL 140

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 10/94 (10%)

Query: 410 GRLLGEGTIGRVYRAKYPDG---------KVLAVKKIDSSHFQRANSESFSEIVQNISRI 460
           G+ LGEG  G+V  A+             KV AVK + S   ++  S+  SE+       
Sbjct: 74  GKPLGEGAFGQVVLAEAIGLDKDKPNRVTKV-AVKMLKSDATEKDLSDLISEMEMMKMIG 132

Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           +H NI  L+G C++ G   +I +Y   G+L E+L
Sbjct: 133 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYL 166

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 53.0 bits (128), Expect = 6e-08
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 8/88 (9%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVL-AVK--KIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
              LG G  G VY   +    +  AVK  K D+        E F +    +  I+H N+ 
Sbjct: 18  KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-----EVEEFLKEAAVMKEIKHPNLV 72

Query: 467 ELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           +L+G C+ +    +I ++   G+L ++L
Sbjct: 73  QLLGVCTREPPFYIITEFMTYGNLLDYL 100

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 410 GRLLGEGTIGRVYRAKYPD-----GKVL-AVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
              LGEG  G+V+ A+  +      K+L AVK + ++S   R + +  +E+   ++ ++H
Sbjct: 46  KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAEL---LTMLQH 102

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            +I    G C+E    +++++Y R+G L+ FL
Sbjct: 103 QHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFL 134

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 410 GRLLGEGTIGRVYRAKY--PDGKVL--AVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
           G++LGEG  G V        DG  L  AVK +   +  +   E F      +    H N+
Sbjct: 39  GKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNV 98

Query: 466 AELVGFCSEQG-----HNILIYDYYRNGSLHEFL 494
             L+G C E         ++I  + + G LH +L
Sbjct: 99  IRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYL 132

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 13/93 (13%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESF-SEIVQNISRIRH-- 462
            ++  + +G G   +V++      ++ A+K ++         +S+ +EI   +++++   
Sbjct: 29  IYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEI-AYLNKLQQHS 87

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             I  L  +     +  ++ +   N  L+ +L 
Sbjct: 88  DKIIRLYDYEITDQYIYMVME-CGNIDLNSWLK 119

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 52.6 bits (127), Expect = 9e-08
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVK--KIDSSHFQRANSESFSEIVQNISRIRHT 463
           +    + LG G  G V   K+     +A+K  K  S      + + F E  + +  + H 
Sbjct: 25  DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-----SEDEFIEEAKVMMNLSHE 79

Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            + +L G C++Q    +I +Y  NG L  +L
Sbjct: 80  KLVQLYGVCTKQRPIFIITEYMANGCLLNYL 110

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVL---AVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
            + LG G  G V +  Y   KV+   AVK + +     A  +        + ++ +  I 
Sbjct: 22  DKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIV 81

Query: 467 ELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            ++G C  +   + + +    G L+++L
Sbjct: 82  RMIGICEAESWML-VMEMAELGPLNKYL 108

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 410 GRLLGEGTIGRVYRAKY--PDGKVL--AVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
             ++G G  G VY       DGK +  AVK ++        S+  +E    +    H N+
Sbjct: 94  NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEG-IIMKDFSHPNV 152

Query: 466 AELVGFCSEQGHNIL-IYDYYRNGSLHEFL 494
             L+G C     + L +  Y ++G L  F+
Sbjct: 153 LSLLGICLRSEGSPLVVLPYMKHGDLRNFI 182

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 410 GRLLGEGTIGRVYRAKY-PDGKVL----AVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
            ++LG G  G VY+  + P+G+ +    A+K++  +   +AN E   E    ++ + + +
Sbjct: 20  IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDE-AYVMASVDNPH 78

Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           +  L+G C      + I      G L +++ 
Sbjct: 79  VCRLLGICLTSTVQL-ITQLMPFGCLLDYVR 108

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 14/93 (15%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESF-SEIVQNISRIRH-- 462
            ++  + +G G   +V++      ++ A+K ++         +S+ +EI   +++++   
Sbjct: 57  IYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEI-AYLNKLQQHS 115

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             I  L  +       I +     N  L+ +L 
Sbjct: 116 DKIIRLYDYE-ITDQYIYMVMECGNIDLNSWLK 147

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 410 GRLLGEGTIGRVYRAKYPDG-----KVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
            R++G+G  G VY  +Y D      +  A+K +      +       E    +  + H N
Sbjct: 26  DRVIGKGHFGVVYHGEYIDQAQNRIQC-AIKSLSRITEMQQVEAFLRE-GLLMRGLNHPN 83

Query: 465 IAELVGFCS-EQGHNILIYDYYRNGSLHEFL 494
           +  L+G     +G   ++  Y  +G L +F+
Sbjct: 84  VLALIGIMLPPEGLPHVLLPYMCHGDLLQFI 114

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 14/93 (15%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESF-SEIVQNISRIRH-- 462
            ++  + +G G   +V++      ++ A+K ++         +S+ +EI   +++++   
Sbjct: 10  IYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEI-AYLNKLQQHS 68

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             I  L  +       I +     N  L+ +L 
Sbjct: 69  DKIIRLYDY-EITDQYIYMVMECGNIDLNSWLK 100

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 406 NFATGRLLGEGTIGRVYRAK-YPDGKVLAVKKID--SSHFQRANSESFSEIVQNISRIRH 462
           NF   + +G G    VYRA    DG  +A+KK+        +A ++   E +  + ++ H
Sbjct: 33  NFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKE-IDLLKQLNH 91

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            N+ +      E     ++ +    G L   +
Sbjct: 92  PNVIKYYASFIEDNELNIVLELADAGDLSRMI 123

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 410 GRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNI---SRIRHTNI 465
             +LG+GT G VY  +       +A+K+I        +S     + + I     ++H NI
Sbjct: 27  RVVLGKGTYGIVYAGRDLSNQVRIAIKEIPER-----DSRYSQPLHEEIALHKHLKHKNI 81

Query: 466 AELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            + +G  SE G   +  +    GSL   L
Sbjct: 82  VQYLGSFSENGFIKIFMEQVPGGSLSALL 110

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 406 NFATGRLLGEGTIGRVYRAK-YPDGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
            +   + +GEG+ G+    K   DG+   +K+I+ S    +   ES  E V  ++ ++H 
Sbjct: 25  KYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRRE-VAVLANMKHP 83

Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           NI +      E G   ++ DY   G L + +
Sbjct: 84  NIVQYRESFEENGSLYIVMDYCEGGDLFKRI 114

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 410 GRLLGEGTIGRVYRAK-YPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAEL 468
              +G G+   VY+         +A  ++      ++  + F E  + +  ++H NI   
Sbjct: 31  DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRF 90

Query: 469 VG----FCSEQGHNILIYDYYRNGSLHEFL 494
                     +   +L+ +   +G+L  +L
Sbjct: 91  YDSWESTVKGKKCIVLVTELMTSGTLKTYL 120

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHF-QRANSESFSEIVQNISRIRHT 463
           ++     +G G+ GR  + +   DGK+L  K++D     +       SE V  +  ++H 
Sbjct: 7   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSE-VNLLRELKHP 65

Query: 464 NIAELVG-FCSEQGHNILIY-DYYRNGSLHEFL 494
           NI              + I  +Y   G L   +
Sbjct: 66  NIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVI 98

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSES--FSEI-VQNISRIR 461
           +F  GR LG+G  G VY A+   +  ++A+K +  S  ++   E     EI +Q  S +R
Sbjct: 15  DFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQ--SHLR 72

Query: 462 HTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           H NI  +  +  ++    L+ ++   G L++ L
Sbjct: 73  HPNILRMYNYFHDRKRIYLMLEFAPRGELYKEL 105

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 410 GRLLGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
            + LG+G  G V   +Y       G+V+AVKK+  S  +  +   F   ++ +  ++H N
Sbjct: 46  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEE--HLRDFEREIEILKSLQHDN 103

Query: 465 IAELVGFCSEQGHN--ILIYDYYRNGSLHEFL 494
           I +  G C   G     LI +Y   GSL ++L
Sbjct: 104 IVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL 135

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 410 GRLLGEGTIGRVYRAKY--PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
              LG G  G VY   +      V AVK +     +    E F +    +  I+H N+ +
Sbjct: 225 KHKLGGGQYGEVYEGVWKKYSLTV-AVKTLKEDTMEV---EEFLKEAAVMKEIKHPNLVQ 280

Query: 468 LVGFCSEQGHNILIYDYYRNGSLHEFL 494
           L+G C+ +    +I ++   G+L ++L
Sbjct: 281 LLGVCTREPPFYIITEFMTYGNLLDYL 307

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 410 GRLLGEGTIGRVYRAKY---PDGKVL--AVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
            + LG+G  G V   +Y    D      AVKK+  S  +  +   F   ++ +  ++H N
Sbjct: 15  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEE--HLRDFEREIEILKSLQHDN 72

Query: 465 IAELVGFCSEQGHN--ILIYDYYRNGSLHEFL 494
           I +  G C   G     LI +Y   GSL ++L
Sbjct: 73  IVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL 104

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVK--KIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
            + LG G  G V   K+     +AVK  K  S      + + F +  Q + ++ H  + +
Sbjct: 13  LKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-----SEDEFFQEAQTMMKLSHPKLVK 67

Query: 468 LVGFCSEQGHNILIYDYYRNGSLHEFL 494
             G CS++    ++ +Y  NG L  +L
Sbjct: 68  FYGVCSKEYPIYIVTEYISNGCLLNYL 94

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 50.0 bits (119), Expect = 5e-07
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 115 PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQ 174
            + + LDL   +        +   +    LN  S  +   L  + +   +L +L+LS N+
Sbjct: 127 GSQQALDLKGLRSDPD----LVAQNIDVVLNRRSC-MAATLRIIEENIPELLSLNLSNNR 181

Query: 175 LTG--ELPRSFASLSSLKKLYLQNNQFT--GSINVLGKLPLDELNVENN 219
           L    ++        +LK L L  N+      ++ +  L L+EL ++ N
Sbjct: 182 LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 230

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 43.8 bits (103), Expect = 5e-05
 Identities = 28/113 (24%), Positives = 37/113 (32%), Gaps = 35/113 (30%)

Query: 91  NLKSVSYLDVSNNNLKD----SIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNL 146
           N+  +  L++SNN L      S   Q  PNLK L+LS N+        +    EL  +  
Sbjct: 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE--------LKSERELDKI-- 217

Query: 147 GSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRS-------FASLSSLKKL 192
                         K  KLE L L  N L                    L +L
Sbjct: 218 --------------KGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRL 256

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 410 GRLLGEGTIGRVYRAKY-PDGKVL----AVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
            ++LG G  G VY+  + P+G+ +    A+K++  +   +AN E   E    ++ + + +
Sbjct: 20  IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDE-AYVMASVDNPH 78

Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           +  L+G C      + I      G L +++ 
Sbjct: 79  VCRLLGICLTSTVQL-ITQLMPFGCLLDYVR 108

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 49.9 bits (120), Expect = 6e-07
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 410 GRLLGEGTIGRVYRAKY--PDGKVL--AVK--KIDSSHFQRANSESFSEIVQNISRIRHT 463
              LG+G+ G V R ++  P GK +  AVK  K D      A  +   E V  +  + H 
Sbjct: 23  LEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIRE-VNAMHSLDHR 81

Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           N+  L G        + + +    GSL + L 
Sbjct: 82  NLIRLYGVVLTPPMKM-VTELAPLGSLLDRLR 112

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 20/106 (18%)

Query: 406 NFATGRLLGEGTIGRVYRAK-YPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
           +F   + LG G  G V+ AK   D    A+K+I   + + A  +   E V+ ++++ H  
Sbjct: 6   DFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMRE-VKALAKLEHPG 64

Query: 465 IAELVGF------------CSEQGHNILIY---DYYRNGSLHEFLH 495
           I   V +                   + +Y      R  +L ++++
Sbjct: 65  I---VRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMN 107

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 410 GRLLGEGTIGRVYRAKY-PDGKVL----AVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
            ++LG G  G V++  + P+G+ +     +K I+    +++        +  I  + H +
Sbjct: 18  LKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDH-MLAIGSLDHAH 76

Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           I  L+G C      + +  Y   GSL + + 
Sbjct: 77  IVRLLGLCPGSSLQL-VTQYLPLGSLLDHVR 106

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 50.5 bits (121), Expect = 8e-07
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
              LG+G  G V+   +     +A+K +          E+F +  Q + ++RH  + +L 
Sbjct: 189 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP---EAFLQEAQVMKKLRHEKLVQLY 245

Query: 470 GFCSEQGHNILIYDYYRNGSLHEFL 494
              SE+   I + +Y   GSL +FL
Sbjct: 246 AVVSEEPIYI-VTEYMSKGSLLDFL 269

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 50.5 bits (121), Expect = 8e-07
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
            + LG G  G V+ A Y     +AVK +          E+F      +  ++H  + +L 
Sbjct: 193 EKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSV---EAFLAEANVMKTLQHDKLVKLH 249

Query: 470 GFCSEQGHNILIYDYYRNGSLHEFL 494
              +++   I I ++   GSL +FL
Sbjct: 250 AVVTKEPIYI-ITEFMAKGSLLDFL 273

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 8/87 (9%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVK--KIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
              LG G  G V+   Y     +AVK  K  S      + ++F      + +++H  +  
Sbjct: 18  VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-----SPDAFLAEANLMKQLQHQRLVR 72

Query: 468 LVGFCSEQGHNILIYDYYRNGSLHEFL 494
           L    +++   I I +Y  NGSL +FL
Sbjct: 73  LYAVVTQEPIYI-ITEYMENGSLVDFL 98

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 4/93 (4%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
            +    +LG+G    V+R ++   G + A+K  ++  F R       E  + + ++ H N
Sbjct: 10  LWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREF-EVLKKLNHKN 68

Query: 465 IAELVGF--CSEQGHNILIYDYYRNGSLHEFLH 495
           I +L      +   H +LI ++   GSL+  L 
Sbjct: 69  IVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLE 101

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 410 GRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAEL 468
              +G G+ G V+R K    G   AVKK+     +    E   E+    + +    I  L
Sbjct: 63  QPRVGRGSFGEVHRMKDKQTGFQCAVKKVR---LEVFRVE---EL-VACAGLSSPRIVPL 115

Query: 469 VGFCSEQGHNILIYDYYRNGSLHEFL 494
            G   E     +  +    GSL + +
Sbjct: 116 YGAVREGPWVNIFMELLEGGSLGQLI 141

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 9/92 (9%)

Query: 410 GRLLGEGTIGRVYRAKY---PDGKVL--AVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
              LG+G  G V   +Y    D      AVK++  S         F   +Q +  +    
Sbjct: 28  ISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPD--QQRDFQREIQILKALHSDF 85

Query: 465 IAELVGFCSEQGHN--ILIYDYYRNGSLHEFL 494
           I +  G     G     L+ +Y  +G L +FL
Sbjct: 86  IVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFL 117

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
              LG+G  G V+   +     +A+K +          E+F +  Q + ++RH  + +L 
Sbjct: 272 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP---EAFLQEAQVMKKLRHEKLVQLY 328

Query: 470 GFCSEQGHNILIYDYYRNGSLHEFL 494
              SE+   I + +Y   GSL +FL
Sbjct: 329 AVVSEEPIYI-VTEYMSKGSLLDFL 352

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 410 GRLLGEGTIGRVYRAKY--PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
           G  +G G  G V+  +    +  V AVK    +      ++   E  + + +  H NI  
Sbjct: 119 GEQIGRGNFGEVFSGRLRADNTLV-AVKSCRETLPPDLKAKFLQEA-RILKQYSHPNIVR 176

Query: 468 LVGFCSEQGHNILIYDYYRNGSLHEFL 494
           L+G C+++    ++ +  + G    FL
Sbjct: 177 LIGVCTQKQPIYIVMELVQGGDFLTFL 203

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 18/164 (10%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSN-NNLKDSIPYQL---PPNLKHLDLS- 123
           S +  + L GL L+  +   L    ++  L++S  +   +     L      L  L+LS 
Sbjct: 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177

Query: 124 -ENQFSGTVPYSISQ-MSELKYLNLGSNQLNGQLSD-----MFQKNEKLETLDLSK-NQL 175
             +     V  +++     +  LNL  +     L       + ++   L  LDLS    L
Sbjct: 178 CFDFTEKHVQVAVAHVSETITQLNL--SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 235

Query: 176 TGELPRSFASLSSLKKLYLQN-NQFT-GSINVLGKLP-LDELNV 216
             +  + F  L+ L+ L L         ++  LG++P L  L V
Sbjct: 236 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 279

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 8/161 (4%)

Query: 44  SQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNN 103
           S  S W+         H        S              Q   +  +   V ++D+SN+
Sbjct: 44  SDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS 103

Query: 104 NLKDSIPYQLP---PNLKHLDLSENQFSGTVPYSISQMSELKYLNL-GSNQL-NGQLSDM 158
            ++ S  + +      L++L L   + S  +  ++++ S L  LNL G +      L  +
Sbjct: 104 VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 163

Query: 159 FQKNEKLETLDLSK-NQLTGELPRSFAS--LSSLKKLYLQN 196
                +L+ L+LS     T +  +   +    ++ +L L  
Sbjct: 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 30/140 (21%), Positives = 62/140 (44%), Gaps = 3/140 (2%)

Query: 60  HWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKH 119
            W  +    S    + L+G  L+  +  +L +   +++    +   +    +  P  ++H
Sbjct: 38  RWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQH 97

Query: 120 LDLSENQFS-GTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSK-NQLTG 177
           +DLS +     T+   +SQ S+L+ L+L   +L+  + +   KN  L  L+LS  +  + 
Sbjct: 98  MDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE 157

Query: 178 ELPRSFAS-LSSLKKLYLQN 196
              ++  S  S L +L L  
Sbjct: 158 FALQTLLSSCSRLDELNLSW 177

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 13/97 (13%)

Query: 406 NFATGRLLGEGTIGRVYRAK-YPDGKVLAVKKI---DSSHFQRANSESFSEIVQNISRIR 461
           ++   + LGEG    V   +   DG   A+K+I   +    + A  E             
Sbjct: 30  HYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQRE-----ADMHRLFN 84

Query: 462 HTNIAELVGFCSEQ---GHNILIY-DYYRNGSLHEFL 494
           H NI  LV +C  +    H   +   +++ G+L   +
Sbjct: 85  HPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEI 121

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
            +    +LG+G    V+R ++   G + A+K  ++  F R       E  + + ++ H N
Sbjct: 10  LWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREF-EVLKKLNHKN 68

Query: 465 IAELVGFCSEQGHN--ILIYDYYRNGSLHEFL 494
           I +L     E      +LI ++   GSL+  L
Sbjct: 69  IVKLFAIEEETTTRHKVLIMEFCPCGSLYTVL 100

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 10/91 (10%)

Query: 410 GRLLGEGTIGRVYRAKY--PDGKVL--AVK--KIDSSHFQRANSESFSEIVQNISRIRHT 463
           GR +GEG  G V++  Y  P+   L  A+K  K  +S   R   E F +    + +  H 
Sbjct: 20  GRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVR---EKFLQEALTMRQFDHP 76

Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           +I +L+G  +E    I I +    G L  FL
Sbjct: 77  HIVKLIGVITENPVWI-IMELCTLGELRSFL 106

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 397 MADLLTA--TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEI 453
           MA +     T  +     LG+G    V R      G+  A   I++      + +     
Sbjct: 1   MATITCTRFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLERE 60

Query: 454 VQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSL 490
            +    ++H NI  L    SE+GH+ LI+D    G L
Sbjct: 61  ARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGEL 97

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 18/119 (15%)

Query: 391 QAAPFSMADLLTATANFAT---------GRLLGEGTIGRVYRAKY--PDGKVL--AVK-- 435
            A P +  +   A  +F            +++G G  G V   +   P  + +  A+K  
Sbjct: 26  YAEPHTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKAL 85

Query: 436 KIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           K   +  QR +   F      + +  H NI  L G  +     +++ +Y  NGSL  FL
Sbjct: 86  KAGYTERQRRD---FLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFL 141

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 47.4 bits (112), Expect = 5e-06
 Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 7/108 (6%)

Query: 390 AQAAPFSMADLLT-ATANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANS 447
            Q A  ++  LL+           L  G    V+  +  +  +  A+K          + 
Sbjct: 46  PQNAETTVDSLLSQGERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSE 105

Query: 448 -ESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            E   E     +R+   +  E      ++   +L  D     S   F 
Sbjct: 106 LERLHEATFAAARLLGESPEEA----RDRRRLLLPSDAVAVQSQPPFA 149

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHT 463
            F     +G G  G V++     DG + A+K+         + ++    V   + + +H+
Sbjct: 12  EFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHS 71

Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           ++       +E  H ++  +Y   GSL + +
Sbjct: 72  HVVRYFSAWAEDDHMLIQNEYCNGGSLADAI 102

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRH 462
           +  +   + LG G  G V   +        A+K I  +    +++    E V  +  + H
Sbjct: 36  SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDH 95

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSL 490
            NI +L  F  ++ +  L+ + Y+ G L
Sbjct: 96  PNIMKLYDFFEDKRNYYLVMECYKGGEL 123

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 410 GRLLGEGTIGRVYRAKY--PDGKVL--AVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
           GR +GEG  G V++  Y  P+   +  A+K   +        +   E    + +  H +I
Sbjct: 395 GRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQE-ALTMRQFDHPHI 453

Query: 466 AELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            +L+G  +E     +I +    G L  FL
Sbjct: 454 VKLIGVITEN-PVWIIMELCTLGELRSFL 481

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 410 GRLLGEGTIGRVYRAKY--PDGKVL--AVK--KIDSSHFQRANSESFSEIVQNISRIRHT 463
            R+LGEG  G VY   Y    G+ +  AVK  K D +   +   E F      +  + H 
Sbjct: 17  NRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNK---EKFMSEAVIMKNLDHP 73

Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           +I +L+G   E+   I I + Y  G L  +L
Sbjct: 74  HIVKLIGIIEEEPTWI-IMELYPYGELGHYL 103

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRH 462
              +    +LG+G+ G V + K     +  AVK I+ +  +  ++ +    V+ + ++ H
Sbjct: 21  AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDH 80

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSL 490
            NI +L     +     ++ + Y  G L
Sbjct: 81  PNIMKLFEILEDSSSFYIVGELYTGGEL 108

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 75/551 (13%), Positives = 151/551 (27%), Gaps = 161/551 (29%)

Query: 18  SCHVLSKTDSQDASALNV----MYTSLHSP-SQLSNWKA----G-GGDPCGEHW-KGITC 66
                   D+Q  +  NV     Y  L     +L   K     G  G   G+ W     C
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG--SGKTWVALDVC 171

Query: 67  SGSSVTEIKLSG------LGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHL 120
               V + K+        L         L  L+ + Y    N   +      +   +  +
Sbjct: 172 LSYKV-QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 121 DLSENQFSGTVPYS--------ISQMSELKYLNLGS------------NQLNGQ------ 154
                +   + PY         +         NL              + L+        
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 155 ---LSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPL 211
               S     +E    L    +    +LPR   + +  +            ++++ +   
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR------------LSIIAESIR 338

Query: 212 DELNVENNKFSGWVPEELKDIAKTGGNSWSSSPAPPPPPGTKPVTKRKA----SPFREGD 267
           D L   +N    W       +     +S +           +P   RK     S F    
Sbjct: 339 DGLATWDN----WKHVNCDKLTTIIESSLNV---------LEPAEYRKMFDRLSVFPPS- 384

Query: 268 ESSSSKIWQWVIIAIAVLLAL-------AIIAIVIALFSR----RRSSPSSHFL------ 310
                       I   +L  +        ++ +V  L       ++   S+  +      
Sbjct: 385 ----------AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 311 -----DEERASQRR---AFTPLASQELTNDMAPESIKPFKGIDDYKGGQDYMGFHDYKSN 362
                + E A  R     +    + + ++D+ P        +D Y     ++G H     
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFD-SDDLIPPY------LDQYF--YSHIGHHLKNIE 485

Query: 363 QDHYKGNLF--VFWHLLEVNQFNNVK---STNAQAAPFSMADLLTATANFATGRLLGEGT 417
               +  LF  VF       +F   K    + A  A  S+ + L         +L     
Sbjct: 486 HPE-RMTLFRMVFLDF----RFLEQKIRHDSTAWNASGSILNTLQ--------QL----- 527

Query: 418 IGRVYRAKYPDGKVLAVKKIDSSHFQRANS-ESFSE-IVQNISRIRHTNIAELVGFCSEQ 475
             + Y+  Y       +   D  + +  N+   F   I +N+   ++T++  +    +E 
Sbjct: 528 --KFYK-PY-------ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI-ALMAE- 575

Query: 476 GHNILIYDYYR 486
               +  + ++
Sbjct: 576 -DEAIFEEAHK 585

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPD------GKVLAVKKIDSSHFQRANSESFSEIVQNISR 459
                 LLGEG   +VY A   D       +   +K    ++       +  ++++ +  
Sbjct: 66  LVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGT--QLMERLKP 123

Query: 460 IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
                  +       Q  ++L+ + Y  G+L   +
Sbjct: 124 SMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAI 158

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 410 GRLLGEGTIGRVYRAKY--PDGKVL--AVK--KIDSSHFQRANSESFSEIVQNISRIRHT 463
            +++G G  G V   +   P  K +  A+K  K+  +  QR     F      + +  H 
Sbjct: 50  DKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR---RDFLGEASIMGQFDHP 106

Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           NI  L G  ++    +++ +Y  NGSL  FL 
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR 138

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
           +F    L+G G  G+V++AK+  DGK   +K++  ++ ++A  E     V+ ++++ H N
Sbjct: 12  DFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN-EKAERE-----VKALAKLDHVN 65

Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           I    G      ++        + S  + L 
Sbjct: 66  IVHYNGCWDGFDYDPETSSKNSSRSKTKCLF 96

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 413 LGEGTIGRVYRAKY--PDGKVL-AVK--KIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
           LG G  G V +  Y     ++  A+K  K  +        E      Q + ++ +  I  
Sbjct: 18  LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADT---EEMMREAQIMHQLDNPYIVR 74

Query: 468 LVGFCSEQGHNILIYDYYRNGSLHEFL 494
           L+G C  +   + + +    G LH+FL
Sbjct: 75  LIGVCQAEALML-VMEMAGGGPLHKFL 100

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 413 LGEGTIGRVYRAKYPDGKVL---AVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
           LG G  G V +  Y   K     A+K +     +    E   E  Q + ++ +  I  L+
Sbjct: 344 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMRE-AQIMHQLDNPYIVRLI 402

Query: 470 GFCSEQGHNILIYDYYRNGSLHEFL 494
           G C  +   + + +    G LH+FL
Sbjct: 403 GVCQAEALML-VMEMAGGGPLHKFL 426

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 8/107 (7%)

Query: 393 APFSMADLLTATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFS 451
            PF    +      +  G  LG G    V + +    G   A K I     + +      
Sbjct: 3   EPFKQQKV---EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSR 59

Query: 452 EIVQN----ISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           E ++     + ++ H N+  L      +   +LI +    G L +FL
Sbjct: 60  EEIEREVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFL 106

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 383 NNVKSTNAQAAPFSMADLLTATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSH 441
           +++ +T       S A     +  +   R+LG+G+ G V   K    G+  AVK I    
Sbjct: 7   DHLHATPGMFVQHSTAIF---SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQ 63

Query: 442 F-QRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSL 490
             Q+ + ES    VQ + ++ H NI +L  F  ++G+  L+ + Y  G L
Sbjct: 64  VKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGEL 113

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 17/104 (16%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
           +F    +LG+G  G+V +A+   D +  A+KKI  +  +   S   SE+   ++ + H  
Sbjct: 7   DFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKL--STILSEV-MLLASLNHQY 63

Query: 465 IAELVGFCSEQGHNIL----------IY---DYYRNGSLHEFLH 495
           +        E+ + +           ++   +Y  NG+L++ +H
Sbjct: 64  VVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIH 107

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 19/139 (13%)

Query: 372 VFWHLLEVNQFNNVKSTNAQAAPFSMADLLTATANFAT---------GRLLGEGTIGRVY 422
            ++H    + ++   + N        +D   A   F T          +++G G  G VY
Sbjct: 2   SYYHHHHHHDYDIPTTENLYFQGAMGSDPNQAVLKFTTEIHPSCVTRQKVIGAGEFGEVY 61

Query: 423 RAKY--PDGKVL---AVK--KIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ 475
           +       GK     A+K  K   +  QR     F      + +  H NI  L G  S+ 
Sbjct: 62  KGMLKTSSGKKEVPVAIKTLKAGYTEKQR---VDFLGEAGIMGQFSHHNIIRLEGVISKY 118

Query: 476 GHNILIYDYYRNGSLHEFL 494
              ++I +Y  NG+L +FL
Sbjct: 119 KPMMIITEYMENGALDKFL 137

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQN----IS 458
              +  G  LG G    V + +    G   A K I     + +      E ++     + 
Sbjct: 11  EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILR 70

Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           ++ H NI  L      +   +LI +    G L +FL
Sbjct: 71  QVLHPNIITLHDVYENRTDVVLILELVSGGELFDFL 106

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
           +F   + +G G  G V+ AK   D    A+K+I   + + A  +   E V+ ++++ H  
Sbjct: 7   DFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMRE-VKALAKLEHPG 65

Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           I        E        +        E   
Sbjct: 66  IVRYFNAWLETPPEKWQEEMDEIWLKDESTD 96

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRH 462
              +    +LG+G+ G V + K     +  AVK I+ +  +  ++ +    V+ + ++ H
Sbjct: 21  AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDH 80

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSL 490
            NI +L     +     ++ + Y  G L
Sbjct: 81  PNIMKLFEILEDSSSFYIVGELYTGGEL 108

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 18/105 (17%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFS-------------- 451
           ++   R L +G   ++   +  D K  A+KK + S  ++    + S              
Sbjct: 32  DYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDF 90

Query: 452 --EIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
             E+ Q I+ I++       G  +      +IY+Y  N S+ +F 
Sbjct: 91  KNEL-QIITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFD 134

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 4/112 (3%)

Query: 383 NNVKSTNAQAAPFSMADLLTATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSH 441
           ++  S+  +   F    LL     +     +G+G+ G V  A       + A+K ++ + 
Sbjct: 4   HHHHSSGRENLYFQGGSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNK 63

Query: 442 FQRANSESFSEI---VQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSL 490
            ++ N +    I   V+ + ++ H NIA L     ++ +  L+ +    G L
Sbjct: 64  IRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHL 115

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 410 GRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNIS---RIRHTNI 465
             ++G+G    V R      G+  AVK +D + F  +   S  ++ +  S    ++H +I
Sbjct: 29  CEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHI 88

Query: 466 AELVGFCSEQGHNILIYDYYRNGSL 490
            EL+   S  G   +++++     L
Sbjct: 89  VELLETYSSDGMLYMVFEFMDGADL 113

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 1/88 (1%)

Query: 404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRH 462
           + N+     LG+G    V R  +   G   A K I++      + +      +   +++H
Sbjct: 28  SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQH 87

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSL 490
            NI  L     E+  + L++D    G L
Sbjct: 88  PNIVRLHDSIQEESFHYLVFDLVTGGEL 115

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 1/88 (1%)

Query: 404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRH 462
           + N+     LG+G    V R  +   G   A K I++      + +      +   +++H
Sbjct: 5   SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQH 64

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSL 490
            NI  L     E+  + L++D    G L
Sbjct: 65  PNIVRLHDSIQEESFHYLVFDLVTGGEL 92

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSES-FSEIVQNISRIRHT 463
           +F     LG G+ G V++ +   DG++ AVK+  S      +     +E+  +    +H 
Sbjct: 58  SFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHP 117

Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
               L     E G   L  +     SL +  
Sbjct: 118 CCVRLEQAWEEGGILYLQTE-LCGPSLQQHC 147

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 44.5 bits (104), Expect = 4e-05
 Identities = 23/125 (18%), Positives = 35/125 (28%), Gaps = 23/125 (18%)

Query: 391 QAAPFSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESF 450
           Q  P   +  L  T        +GEG  G V++       V A+K I        N    
Sbjct: 7   QKGPVPFSHCL-PTEKLQRCEKIGEGVFGEVFQTIADHTPV-AIKIIAIEGPDLVNGSHQ 64

Query: 451 SEIVQNISRI---------------RHTNIAELVGFCSEQG----HNILIYDYYR--NGS 489
               + +  I               R      L      QG      +  +D+Y    GS
Sbjct: 65  KTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGS 124

Query: 490 LHEFL 494
            ++  
Sbjct: 125 ANDRP 129

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
           +F    +LG G  G +      D + +AVK+I    F  A+ E   ++++      H N+
Sbjct: 25  SFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADRE--VQLLRESD--EHPNV 80

Query: 466 AELVGFCSEQGHNILIYDYYRNGSLHEFL 494
                   ++    +  +     +L E++
Sbjct: 81  IRYFCTEKDRQFQYIAIELCA-ATLQEYV 108

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 18/158 (11%)

Query: 55  DPCGEHWKGITCSGSSVTEIKLSGLGLN------GQLGYQLTNLKSVSYLDVSNNNLKDS 108
           D  G        + +S+  + +S L          +L  +  NLKS   L ++     + 
Sbjct: 170 DVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS---LKLNRAVPLEK 226

Query: 109 IPYQLP--PNLKHLDLS------ENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQ 160
           +   L   P L+ L                +  ++S   EL+ L+   + +   L  ++ 
Sbjct: 227 LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS 286

Query: 161 KNEKLETLDLSKNQLTGE-LPRSFASLSSLKKLYLQNN 197
              +L TL+LS   +    L +       L++L++ + 
Sbjct: 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 22/168 (13%)

Query: 44  SQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSGLGLN----GQLGYQLTNLKSVSYLD 99
           +  +    G G       + ++ S + + EI+L  + +       +     N K    L 
Sbjct: 80  ADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKV---LV 136

Query: 100 VSN-NNLKDSIPYQLP---PNLKHLDLSENQFSGTVPYSISQMSE----LKYLNLGSNQL 151
           +S+           +     NLK LDL E+       + +S   +    L  LN+  + L
Sbjct: 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNI--SCL 194

Query: 152 NGQLSD-----MFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYL 194
             ++S      +  +   L++L L++     +L         L++L  
Sbjct: 195 ASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 25/145 (17%), Positives = 52/145 (35%), Gaps = 21/145 (14%)

Query: 78  GLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQ 137
           G   NG +  Q    + V     ++ +++  I      +    +++ N         I  
Sbjct: 4   GTTFNGIM--QSYVPRIVPDEPDNDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRS 61

Query: 138 MSE-------LKYLNLGSNQLNGQ----LSDMFQKNEKLETLDLSKNQLTGE----LPRS 182
           + E       ++  +L +  ++      L ++ + +  L  L++  N LT E    L RS
Sbjct: 62  LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121

Query: 183 FASLSSLKKLYLQNNQFTGSINVLG 207
                S+ +    N       +VLG
Sbjct: 122 TLVTQSIVEFKADNQ----RQSVLG 142

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 17/103 (16%)

Query: 93  KSVSYLDVSNNNLKDSIPYQLP------PNLKHLDLSENQFSGTVPYSISQM-------S 139
           K +    ++N  + DS    L       P+L+ L++  N  +  +   + +         
Sbjct: 70  KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIV 129

Query: 140 ELKYLNLGSNQLNGQ----LSDMFQKNEKLETLDLSKNQLTGE 178
           E K  N   + L  Q    +    ++NE L  + +S   +   
Sbjct: 130 EFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEAR 172

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSES-------FSEIVQNI 457
            ++T   LG G  G V+ A      K + VK I                     EI   +
Sbjct: 25  KYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEI-AIL 83

Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNG 488
           SR+ H NI +++     QG   L+ + + +G
Sbjct: 84  SRVEHANIIKVLDIFENQGFFQLVMEKHGSG 114

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 43.3 bits (103), Expect = 9e-05
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQN----IS 458
             ++  G  LG G    V + +    GK  A K I       +      E ++     + 
Sbjct: 4   EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILR 63

Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            IRH NI  L      +   +LI +    G L +FL
Sbjct: 64  EIRHPNIITLHDIFENKTDVVLILELVSGGELFDFL 99

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 24/161 (14%), Positives = 49/161 (30%), Gaps = 12/161 (7%)

Query: 64  ITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSN-NNLKDSIPYQLPPNLKHLDL 122
           +    +   +I    L     +     +L S   + V +   L+    ++   NL+    
Sbjct: 197 LNFYMTEFAKISPKDLET---IARNCRSLVS---VKVGDFEILELVGFFKAAANLEEFCG 250

Query: 123 SENQFSGTVPYSISQMSELKYLNLGSNQLNGQ--LSDMFQKNEKLETLDLSK-NQLTGEL 179
                   +P     +   + L        G   +  +F    ++  LDL      T + 
Sbjct: 251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH 310

Query: 180 PRSFASLSSLKKLYLQNNQFTGSINVLGKL--PLDELNVEN 218
                   +L+ L  +N      + VL +    L  L +E 
Sbjct: 311 CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
            +     LG G  G V R  +   G+ +A+K+       +       EI Q + ++ H N
Sbjct: 15  PWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEI-QIMKKLNHPN 73

Query: 465 IAELV------GFCSEQGHNILIYDYYRNGSLHEFLH 495
           +             +     +L  +Y   G L ++L+
Sbjct: 74  VVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLN 110

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQN----IS 458
              + TG  LG G    V + +    G   A K I     + +      E ++     + 
Sbjct: 10  DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILK 69

Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
            I+H N+  L      +   ILI +    G L +FL
Sbjct: 70  EIQHPNVITLHEVYENKTDVILILELVAGGELFDFL 105

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNI-SRIR 461
              F   R LG G  G V+  +    G    +K I+    Q    +  +EI   +   + 
Sbjct: 21  DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEI--EVLKSLD 78

Query: 462 HTNIAELVGFCSEQGHNILIYDYYRNGSL 490
           H NI ++     +  +  ++ +    G L
Sbjct: 79  HPNIIKIFEVFEDYHNMYIVMETCEGGEL 107

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 9/96 (9%)

Query: 404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISR--- 459
             N+    +LG G    V R  + P  K  AVK ID +     ++E   E+ +   +   
Sbjct: 16  YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVD 75

Query: 460 I-----RHTNIAELVGFCSEQGHNILIYDYYRNGSL 490
           I      H NI +L           L++D  + G L
Sbjct: 76  ILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGEL 111

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 2/86 (2%)

Query: 410 GRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAEL 468
            + LGEG  G V  A      + +AVK +D             EI      + H N+ + 
Sbjct: 12  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI-CINKMLNHENVVKF 70

Query: 469 VGFCSEQGHNILIYDYYRNGSLHEFL 494
            G   E     L  +Y   G L + +
Sbjct: 71  YGHRREGNIQYLFLEYCSGGELFDRI 96

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 165 LETLDLSKNQLTGELPR-SFASLSSLKKLYLQNNQF 199
              L L+ N LT  LP     +L +L+  +L  N +
Sbjct: 33  TTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW 67

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 101 SNNNLKD-SIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLN 152
               L   S+P   P +   L L+ N  +   P  +  +  L+  +LG+N   
Sbjct: 16  GRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 11/69 (15%)

Query: 407 FATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNIS----RIR 461
           F    L+G GT G+VY+ ++   G++ A+K +D         +   EI Q I+       
Sbjct: 26  FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMD------VTGDEEEEIKQEINMLKKYSH 79

Query: 462 HTNIAELVG 470
           H NIA   G
Sbjct: 80  HRNIATYYG 88

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 410 GRLLGEGTIGRVYRAK-YPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAEL 468
            R+L EG    VY A+    G+  A+K++ S+  ++       E+        H NI + 
Sbjct: 33  RRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNR-AIIQEVCFMKKLSGHPNIVQF 91

Query: 469 VGFCS-------EQGHNILIYDYYRNGSLHEFL 494
               S             L+      G L EFL
Sbjct: 92  CSAASIGKEESDTGQAEFLLLTELCKGQLVEFL 124

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 2/86 (2%)

Query: 410 GRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAEL 468
            + LGEG  G V  A      + +AVK +D             EI      + H N+ + 
Sbjct: 12  VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI-CINKMLNHENVVKF 70

Query: 469 VGFCSEQGHNILIYDYYRNGSLHEFL 494
            G   E     L  +Y   G L + +
Sbjct: 71  YGHRREGNIQYLFLEYCSGGELFDRI 96

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 413 LGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNI---SRIRHTNIAEL 468
           +G+G+ G V++       KV+A+K ID    +    +   +I Q I   S+     + + 
Sbjct: 30  IGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAE----DEIEDIQQEITVLSQCDSPYVTKY 85

Query: 469 VG 470
            G
Sbjct: 86  YG 87

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 404 TANFATGRLLGEGTIGRVYRAK-YPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRH 462
           +  F     LG G    VYR K     K  A+K +     +  + +     +  + R+ H
Sbjct: 52  SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLK----KTVDKKIVRTEIGVLLRLSH 107

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSL 490
            NI +L           L+ +    G L
Sbjct: 108 PNIIKLKEIFETPTEISLVLELVTGGEL 135

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 406 NFATGRLLGEGTIGRVYRAK-YPDGKVLAVKKIDSSHFQRANSES--FSEIVQNISRIRH 462
           ++  G  LG GT G+V   +    G  +AVK ++    +  +       EI QN+   RH
Sbjct: 12  HYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREI-QNLKLFRH 70

Query: 463 TNIAEL 468
            +I +L
Sbjct: 71  PHIIKL 76

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 5/84 (5%)

Query: 408 ATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
              + LGEG+     +  +    +  AVK I          E     ++      H NI 
Sbjct: 14  LKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKE--ITALKLCE--GHPNIV 69

Query: 467 ELVGFCSEQGHNILIYDYYRNGSL 490
           +L     +Q H  L+ +    G L
Sbjct: 70  KLHEVFHDQLHTFLVMELLNGGEL 93

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRH 462
              +     +G G+ G V  A         A KKI     +  + + F + ++ +  + H
Sbjct: 8   NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVE--DVDRFKQEIEIMKSLDH 65

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSL 490
            NI  L     +     L+ +    G L
Sbjct: 66  PNIIRLYETFEDNTDIYLVMELCTGGEL 93

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 407 FATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNI 465
             + ++LG G+ G V       G+ +AVK++       A  E     ++ ++    H N+
Sbjct: 17  VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALME-----IKLLTESDDHPNV 71

Query: 466 AELVGFCSEQGHN 478
                +CSE    
Sbjct: 72  IRY--YCSETTDR 82

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 41.0 bits (97), Expect = 6e-04
 Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRH 462
              F    +LG G    V+  K    GK+ A+K I  S        S    +  + +I+H
Sbjct: 8   RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKS--PAFRDSSLENEIAVLKKIKH 65

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSL 490
            NI  L        H  L+      G L
Sbjct: 66  ENIVTLEDIYESTTHYYLVMQLVSGGEL 93

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 9/62 (14%)

Query: 413 LGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNI---SRIRHTNIAEL 468
           LG+G  G+VY+AK    G + A K I++        E   + +  I   +   H  I +L
Sbjct: 27  LGDGAFGKVYKAKNKETGALAAAKVIETKS-----EEELEDYIVEIEILATCDHPYIVKL 81

Query: 469 VG 470
           +G
Sbjct: 82  LG 83

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 413 LGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNI---SRIRHTNIAEL 468
           +G G+ G VY A+   + +V+A+KK+  S  Q   +E + +I++ +    ++RH N  + 
Sbjct: 62  IGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS--NEKWQDIIKEVRFLQKLRHPNTIQY 119

Query: 469 VG 470
            G
Sbjct: 120 RG 121

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 413 LGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNI---SRIRHTNI 465
           +G G    V  A   P  + +A+K+I+    Q     S  E+++ I   S+  H NI
Sbjct: 23  IGSGATAVVQAAYCAPKKEKVAIKRINLEKCQ----TSMDELLKEIQAMSQCHHPNI 75

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 9/77 (11%)

Query: 413 LGEGTIGRVYRAKYPD---GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
           +G GT G VY+AK  D    K  A+K+I+ +     +  +  EI   +  ++H N+  L 
Sbjct: 29  VGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI---SMSACREI-ALLRELKHPNVISLQ 84

Query: 470 GFCSEQGHNI--LIYDY 484
                       L++DY
Sbjct: 85  KVFLSHADRKVWLLFDY 101

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 9/87 (10%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 116 NLKHLDLSENQFSGTVPYSISQMSELKYLNL-GSNQLN----GQLSDMFQKNEKLETLDL 170
            ++ +D +++         +  +  ++ + L   + +      +LS +    + +  +++
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 171 SKN-QLTGELPRSFASLSSLKKLYLQN 196
                +T +   +     +LK L+L +
Sbjct: 122 ISCGNVTDKGIIALHHFRNLKYLFLSD 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	495
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.86
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.83
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.83
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.82
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.82
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.82
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.81
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.81
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.81
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.81
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.81
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.8
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.8
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.79
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.79
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.79
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.79
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.78
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.78
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.78
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.78
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.78
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.78
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.78
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.78
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.76
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.76
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.75
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.75
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.75
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.75
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.75
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.75
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.74
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.74
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.74
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.74
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.73
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.73
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.73
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.73
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.73
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.72
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.72
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.72
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.72
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.72
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.72
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.7
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.69
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.68
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.68
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.67
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.66
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.66
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.65
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.65
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.65
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.64
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.64
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.64
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.63
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.62
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.62
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.62
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.62
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.61
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.61
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.59
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.59
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.59
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.59
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.59
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.58
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.57
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.57
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.57
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.57
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.56
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.56
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.55
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.55
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.54
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.54
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.54
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.53
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.53
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.52
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.51
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.44
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.43
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.43
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.41
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.41
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.4
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.4
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.4
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.39
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.38
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.37
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.37
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.34
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.32
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.32
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.32
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.31
3uqc_A	286	Probable conserved transmembrane protein; structur	99.31
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.3
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.3
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.3
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.29
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.29
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.29
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.29
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.29
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.28
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.28
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.28
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.27
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.27
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.27
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.26
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.26
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.26
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.25
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.25
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.25
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.25
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.25
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.25
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.25
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.25
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.24
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.24
3niz_A	311	Rhodanese family protein; structural genomics, str	99.24
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.24
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.24
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.23
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.23
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.23
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.23
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.23
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.23
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.23
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.22
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.22
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.22
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.22
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.22
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.22
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.21
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.21
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.21
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.21
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.21
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.21
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.2
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.2
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.2
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.2
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.2
3bhy_A	283	Death-associated protein kinase 3; death associate	99.2
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.2
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.19
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.19
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.19
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.19
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.19
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.19
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.19
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.19
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.19
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.19
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.19
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.19
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.19
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.18
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.18
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.18
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.18
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.18
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.18
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.18
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.18
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.18
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.17
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.17
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.17
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.17
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.17
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.17
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.17
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.17
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.16
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.16
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.16
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.16
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.16
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.15
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.15
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.15
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.15
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.15
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.15
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.15
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.15
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.15
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.15
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.15
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.15
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.15
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.14
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.14
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.13
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.13
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.13
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.13
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.13
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.13
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.13
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.13
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.13
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.13
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.13
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.12
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.12
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.12
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.12
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.12
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.12
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.12
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.12
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.12
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.12
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.12
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.12
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.11
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.11
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.11
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.11
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.11
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.11
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.11
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.1
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.1
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.1
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.1
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.1
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.1
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.1
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.09
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.09
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.09
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.08
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.08
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.08
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.07
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.07
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.07
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.06
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.06
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.05
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.05
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.05
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.05
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.04
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.04
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.04
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.04
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.04
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.04
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.04
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.03
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.03
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.03
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.02
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.02
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.02
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.02
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.02
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.01
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.01
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.01
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.01
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.01
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.01
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	98.99
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	98.99
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	98.98
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	98.98
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	98.98
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	98.97
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	98.97
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	98.96
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	98.96
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	98.96
3aln_A	327	Dual specificity mitogen-activated protein kinase;	98.96
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	98.96
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	98.96
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	98.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.94
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	98.94
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	98.94
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	98.92
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	98.92
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	98.91
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	98.9
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	98.9
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	98.9
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	98.89
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	98.88
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	98.88
2dyl_A	318	Dual specificity mitogen-activated protein kinase	98.88
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	98.87
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	98.87
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	98.86
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	98.84
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	98.82
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	98.82
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	98.82
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	98.82
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	98.81
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.81
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.8
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	98.79
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	98.79
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	98.79
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	98.77
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	98.75
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.73
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	98.72
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	98.71
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	98.7
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	98.68
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	98.64
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.63
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.61
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.56
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.54
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.48
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.42
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.38
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.35
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	98.0
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	98.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	97.9
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.69
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.68
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.55
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.39
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	97.27
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.14
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.98
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.97
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.96
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	96.91
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.73
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.6
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.53
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.41
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.05
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	94.5
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	92.51
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	92.23
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	91.46
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	90.62
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	90.22
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	87.91
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	86.74
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	83.4

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=3.4e-32  Score=267.86  Aligned_cols=209  Identities=27%  Similarity=0.469  Sum_probs=193.3

Q ss_pred             CCChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccEEecC----CCEeEEEcCCCCCcc--ccccccCCCCCCcE
Q 040888           24 KTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSG----SSVTEIKLSGLGLNG--QLGYQLTNLKSVSY   97 (495)
Q Consensus        24 ~~~~~~~~~L~~~~~~~~~~~~l~~w~~~~~~~C~~~w~gv~c~~----~~v~~l~L~~n~l~g--~~~~~~~~l~~L~~   97 (495)
                      .|.++|++||++||+++.++..+.+|.. +.+||.+.|.||.|+.    ++|+.|+|++|+++|  .+|..+.++++|++
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~-~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~   80 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPTTLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCT-TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCCHHHHHHHHHHHHhcCCcccccCCCC-CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence            4788999999999999987767889975 5689955599999985    689999999999999  99999999999999


Q ss_pred             EECcC-CCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCc
Q 040888           98 LDVSN-NNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQ  174 (495)
Q Consensus        98 L~Ls~-N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~  174 (495)
                      |+|++ |.+.+.+|..+.  ++|++|+|++|++++.+|..+.++++|++|+|++|.+++.+|..+..+++|++|+|++|+
T Consensus        81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  160 (313)
T 1ogq_A           81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence            99995 999999998876  899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCcccccCCC-CCCEEeccCCcccccc-cccCCccCcEEEeecCCCcccCchhhhhcc
Q 040888          175 LTGELPRSFASLS-SLKKLYLQNNQFTGSI-NVLGKLPLDELNVENNKFSGWVPEELKDIA  233 (495)
Q Consensus       175 l~g~~p~~~~~l~-~L~~L~l~~N~l~g~~-~~~~~~~L~~l~l~~N~l~g~~p~~l~~l~  233 (495)
                      ++|.+|..+..++ +|+.|+|++|++++.+ ..+..+.|+.|++++|.+++.+|..+..++
T Consensus       161 l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~  221 (313)
T 1ogq_A          161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK  221 (313)
T ss_dssp             CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTS
T ss_pred             ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCC
Confidence            9999999999998 9999999999999877 667777799999999999999998887665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=5.7e-28  Score=265.95  Aligned_cols=208  Identities=25%  Similarity=0.382  Sum_probs=159.8

Q ss_pred             cccCCChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccEEecCCCEeEEEcCCCCCccc---cc-----------
Q 040888           21 VLSKTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSGLGLNGQ---LG-----------   86 (495)
Q Consensus        21 ~~~~~~~~~~~~L~~~~~~~~~~~~l~~w~~~~~~~C~~~w~gv~c~~~~v~~l~L~~n~l~g~---~~-----------   86 (495)
                      +++...++|++||++||+++.++..+++|.. +.+||  .|.||.|+.++|+.|+|+++++.|.   +|           
T Consensus         5 ~~~~~~~~~~~all~~k~~~~~~~~l~~W~~-~~~~C--~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~   81 (768)
T 3rgz_A            5 SPSQSLYREIHQLISFKDVLPDKNLLPDWSS-NKNPC--TFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES   81 (768)
T ss_dssp             ---CCHHHHHHHHHHHHTTCSCTTSSTTCCT-TSCGG--GSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred             ccccCCHHHHHHHHHHHhhCCCcccccCCCC-CCCCc--CCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence            3344467899999999999987767899974 57888  8999999988999999999999997   55           


Q ss_pred             ------------cccCCCCCCcEEECcCCCCCCCCCC--CCC--CCCcEEECcCCcCCCCcchhc-cCCCCCcEEEcccC
Q 040888           87 ------------YQLTNLKSVSYLDVSNNNLKDSIPY--QLP--PNLKHLDLSENQFSGTVPYSI-SQMSELKYLNLGSN  149 (495)
Q Consensus        87 ------------~~~~~l~~L~~L~Ls~N~l~g~~p~--~~~--~~L~~L~Ls~N~l~g~~p~~~-~~l~~L~~L~L~~N  149 (495)
                                  ..++++++|++|||++|.+.|.+|.  .+.  ++|++|||++|.+++.+|..+ .++++|++|+|++|
T Consensus        82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n  161 (768)
T 3rgz_A           82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN  161 (768)
T ss_dssp             EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred             cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence                        4566777788888888887777776  554  677888888887777777665 67777777777777


Q ss_pred             cCCCccchh---hhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcccC
Q 040888          150 QLNGQLSDM---FQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWV  225 (495)
Q Consensus       150 ~l~g~~p~~---~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~~  225 (495)
                      ++++..|..   +.++++|++|++++|.+++.+|.  ..+++|++|+|++|++++.++.++.++ |++|++++|.+++.+
T Consensus       162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~  239 (768)
T 3rgz_A          162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF  239 (768)
T ss_dssp             CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCH
T ss_pred             ccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcc
Confidence            777777766   66777777777777777766553  677778888888888877665566666 888888888888877


Q ss_pred             chhhhhcc
Q 040888          226 PEELKDIA  233 (495)
Q Consensus       226 p~~l~~l~  233 (495)
                      |..+..++
T Consensus       240 ~~~l~~l~  247 (768)
T 3rgz_A          240 SRAISTCT  247 (768)
T ss_dssp             HHHTTTCS
T ss_pred             cHHHhcCC
Confidence            77776655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=5.1e-28  Score=266.37  Aligned_cols=205  Identities=19%  Similarity=0.328  Sum_probs=166.4

Q ss_pred             cCCChHHHHHHHHHHHcCCCCCCCCCCCCCC----CCCCCCCc------------ccEEecC-CCEeEEEcCCCCCcccc
Q 040888           23 SKTDSQDASALNVMYTSLHSPSQLSNWKAGG----GDPCGEHW------------KGITCSG-SSVTEIKLSGLGLNGQL   85 (495)
Q Consensus        23 ~~~~~~~~~~L~~~~~~~~~~~~l~~w~~~~----~~~C~~~w------------~gv~c~~-~~v~~l~L~~n~l~g~~   85 (495)
                      +.+..+|+.||++||+++.++    +|...+    .+||.|.|            .||.|+. ++|+.|+|++++|.|.+
T Consensus       264 ~~~~~~d~~ALl~~k~~l~~~----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i  339 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALDGK----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV  339 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGG----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred             cccchHHHHHHHHHHHHcCCC----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC
Confidence            345567999999999999876    786543    46744599            9999984 79999999999999999


Q ss_pred             ccccCCCCCCcEEEC-cCCCCCCC--------------------------------------------------------
Q 040888           86 GYQLTNLKSVSYLDV-SNNNLKDS--------------------------------------------------------  108 (495)
Q Consensus        86 ~~~~~~l~~L~~L~L-s~N~l~g~--------------------------------------------------------  108 (495)
                      |+.+++|++|+.||| ++|.+.|.                                                        
T Consensus       340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~  419 (876)
T 4ecn_A          340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK  419 (876)
T ss_dssp             CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred             chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence            999999999999999 88876554                                                        


Q ss_pred             --------------------CCCCCC--CCCcEEECcCCcCCC-----------------Ccchhcc--CCCCCcEEEcc
Q 040888          109 --------------------IPYQLP--PNLKHLDLSENQFSG-----------------TVPYSIS--QMSELKYLNLG  147 (495)
Q Consensus       109 --------------------~p~~~~--~~L~~L~Ls~N~l~g-----------------~~p~~~~--~l~~L~~L~L~  147 (495)
                                          +|..+.  ++|++|+|++|+|+|                 .+|..++  ++++|++|+|+
T Consensus       420 ~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls  499 (876)
T 4ecn_A          420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY  499 (876)
T ss_dssp             CCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred             ccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc
Confidence                                555444  789999999999998                 3888877  99999999999


Q ss_pred             cCcCCCccchhhhCCCCCcEEEccCCc-CCC-cCcccccCCC-------CCCEEeccCCccccccc--ccCCcc-CcEEE
Q 040888          148 SNQLNGQLSDMFQKNEKLETLDLSKNQ-LTG-ELPRSFASLS-------SLKKLYLQNNQFTGSIN--VLGKLP-LDELN  215 (495)
Q Consensus       148 ~N~l~g~~p~~~~~l~~L~~L~ls~N~-l~g-~~p~~~~~l~-------~L~~L~l~~N~l~g~~~--~~~~~~-L~~l~  215 (495)
                      +|++.|.+|..+.++++|+.|+|++|+ ++| .+|..+++++       +|+.|+|++|+++..+.  .+..++ |+.|+
T Consensus       500 ~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~  579 (876)
T 4ecn_A          500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLD  579 (876)
T ss_dssp             SCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEE
T ss_pred             CCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEE
Confidence            999999999999999999999999998 888 7787666554       88888888888883334  566666 78888


Q ss_pred             eecCCCcccCchhhhhcc
Q 040888          216 VENNKFSGWVPEELKDIA  233 (495)
Q Consensus       216 l~~N~l~g~~p~~l~~l~  233 (495)
                      +++|.++ .+| .+..++
T Consensus       580 Ls~N~l~-~lp-~~~~L~  595 (876)
T 4ecn_A          580 CVHNKVR-HLE-AFGTNV  595 (876)
T ss_dssp             CTTSCCC-BCC-CCCTTS
T ss_pred             CCCCCcc-cch-hhcCCC
Confidence            8888777 676 555444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=7.9e-28  Score=259.19  Aligned_cols=205  Identities=16%  Similarity=0.314  Sum_probs=176.3

Q ss_pred             CCChHHHHHHHHHHHcCCCCCC---------CCCCCCCCCCCCCCCc---ccEEecC-CCEeEEEcCCCCCccccccccC
Q 040888           24 KTDSQDASALNVMYTSLHSPSQ---------LSNWKAGGGDPCGEHW---KGITCSG-SSVTEIKLSGLGLNGQLGYQLT   90 (495)
Q Consensus        24 ~~~~~~~~~L~~~~~~~~~~~~---------l~~w~~~~~~~C~~~w---~gv~c~~-~~v~~l~L~~n~l~g~~~~~~~   90 (495)
                      .....|+.||.+++.+++.+.+         ..+|.. +.++|  .|   .||.|+. ++|+.|+|++++++|.+|+.++
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-~~~~c--~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~  102 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-NKELD--MWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG  102 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC-SSCGG--GTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGG
T ss_pred             hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC-CCCcc--cccCCCCeEEcCCCCEEEEEecCcccCCcCChHHh
Confidence            3445799999999999866531         237975 56788  89   9999975 5999999999999999999999


Q ss_pred             CCCCCcEEECcCCCC-----------------------------------------------------------------
Q 040888           91 NLKSVSYLDVSNNNL-----------------------------------------------------------------  105 (495)
Q Consensus        91 ~l~~L~~L~Ls~N~l-----------------------------------------------------------------  105 (495)
                      +|++|++|||++|.+                                                                 
T Consensus       103 ~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  182 (636)
T 4eco_A          103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT  182 (636)
T ss_dssp             GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCC
T ss_pred             cCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccc
Confidence            999999999999944                                                                 


Q ss_pred             -------------CCCCCCCCC--CCCcEEECcCCcCCCC-----------------cchhcc--CCCCCcEEEcccCcC
Q 040888          106 -------------KDSIPYQLP--PNLKHLDLSENQFSGT-----------------VPYSIS--QMSELKYLNLGSNQL  151 (495)
Q Consensus       106 -------------~g~~p~~~~--~~L~~L~Ls~N~l~g~-----------------~p~~~~--~l~~L~~L~L~~N~l  151 (495)
                                   +| +|..+.  ++|++|+|++|+|+|.                 +|..++  ++++|++|+|++|++
T Consensus       183 l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l  261 (636)
T 4eco_A          183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN  261 (636)
T ss_dssp             CCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT
T ss_pred             hhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC
Confidence                         34 666665  8999999999999986                 999999  999999999999999


Q ss_pred             CCccchhhhCCCCCcEEEccCCc-CCC-cCcccccCC------CCCCEEeccCCccccccc--ccCCcc-CcEEEeecCC
Q 040888          152 NGQLSDMFQKNEKLETLDLSKNQ-LTG-ELPRSFASL------SSLKKLYLQNNQFTGSIN--VLGKLP-LDELNVENNK  220 (495)
Q Consensus       152 ~g~~p~~~~~l~~L~~L~ls~N~-l~g-~~p~~~~~l------~~L~~L~l~~N~l~g~~~--~~~~~~-L~~l~l~~N~  220 (495)
                      .|.+|..++++++|++|+|++|+ ++| .+|..++++      ++|++|+|++|+++..+.  .++.++ |+.|++++|.
T Consensus       262 ~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~  341 (636)
T 4eco_A          262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ  341 (636)
T ss_dssp             CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCC
T ss_pred             CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCc
Confidence            99999999999999999999998 998 899888876      899999999999994445  678877 9999999999


Q ss_pred             CcccCchhhhhcc
Q 040888          221 FSGWVPEELKDIA  233 (495)
Q Consensus       221 l~g~~p~~l~~l~  233 (495)
                      ++|.+| .+..++
T Consensus       342 l~g~ip-~~~~l~  353 (636)
T 4eco_A          342 LEGKLP-AFGSEI  353 (636)
T ss_dssp             CEEECC-CCEEEE
T ss_pred             Cccchh-hhCCCC
Confidence            998888 665544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=1.4e-26  Score=229.19  Aligned_cols=204  Identities=20%  Similarity=0.269  Sum_probs=178.6

Q ss_pred             CCChHHHHHHHHHHHcCC-CC-CCCCCCC---CCCCCCCCCCcccEEecC----------CCEeEEEcCCCCCccccccc
Q 040888           24 KTDSQDASALNVMYTSLH-SP-SQLSNWK---AGGGDPCGEHWKGITCSG----------SSVTEIKLSGLGLNGQLGYQ   88 (495)
Q Consensus        24 ~~~~~~~~~L~~~~~~~~-~~-~~l~~w~---~~~~~~C~~~w~gv~c~~----------~~v~~l~L~~n~l~g~~~~~   88 (495)
                      ....++..||++||.++. ++ ..+.+|.   ....++|  .|.|+.|..          .+|+.|+|++|+++ .+|..
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~--~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~   99 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE--TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ   99 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSC--CSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred             ccCchHHHHHHHHHHhccCCchhhhhhhccccccccccc--ccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh
Confidence            345678899999999873 33 3456784   2345677  899999952          68999999999998 78888


Q ss_pred             cCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhC-----
Q 040888           89 LTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQK-----  161 (495)
Q Consensus        89 ~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~-----  161 (495)
                      ++++++|++|+|++|.++ .+|..+.  ++|++|+|++|+++ .+|..++++++|++|+|++|++.+.+|..+..     
T Consensus       100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~  177 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG  177 (328)
T ss_dssp             GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred             hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence            999999999999999999 8898776  89999999999999 88999999999999999999999999987764     


Q ss_pred             ----CCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcccCchhhhhcc
Q 040888          162 ----NEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVPEELKDIA  233 (495)
Q Consensus       162 ----l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~~p~~l~~l~  233 (495)
                          +++|++|+|++|+++ .+|..+.++++|+.|+|++|++++.++.+..++ |+.|++++|.+.+.+|..+..++
T Consensus       178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~  253 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA  253 (328)
T ss_dssp             CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC
T ss_pred             hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCC
Confidence                999999999999999 889999999999999999999998777777777 99999999999999998887766

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.6e-23  Score=193.30  Aligned_cols=174  Identities=25%  Similarity=0.304  Sum_probs=151.9

Q ss_pred             CCCCCCcccEEecC-----------CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEE
Q 040888           55 DPCGEHWKGITCSG-----------SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLD  121 (495)
Q Consensus        55 ~~C~~~w~gv~c~~-----------~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~  121 (495)
                      +.|.|.|.+|.|+.           .+++.|+|++|++++..+..|.++++|++|+|++|++++..+..+.  ++|++|+
T Consensus         3 ~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   82 (208)
T 2o6s_A            3 SRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN   82 (208)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence            56777999999974           2589999999999987777899999999999999999965554444  8999999


Q ss_pred             CcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccc
Q 040888          122 LSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG  201 (495)
Q Consensus       122 Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g  201 (495)
                      |++|++++..+..+..+++|++|+|++|+|++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+.+
T Consensus        83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A           83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence            99999998777778999999999999999998888889999999999999999998777778999999999999998876


Q ss_pred             cccccCCccCcEEEeecCCCcccCchhhhhcc
Q 040888          202 SINVLGKLPLDELNVENNKFSGWVPEELKDIA  233 (495)
Q Consensus       202 ~~~~~~~~~L~~l~l~~N~l~g~~p~~l~~l~  233 (495)
                      ..+     .|+.|+++.|.++|.+|.+++++.
T Consensus       163 ~~~-----~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          163 TCP-----GIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             CTT-----TTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             CCC-----CHHHHHHHHHhCCceeeccCcccc
Confidence            432     278889999999999999888765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=2.6e-23  Score=228.85  Aligned_cols=70  Identities=33%  Similarity=0.591  Sum_probs=35.4

Q ss_pred             CCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcccCchhhhhcc
Q 040888          164 KLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVPEELKDIA  233 (495)
Q Consensus       164 ~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~~p~~l~~l~  233 (495)
                      +|+.|||++|+++|.+|..++++++|+.|+|++|+++|.+ ..++.++ |+.|||++|+++|.+|..+.+++
T Consensus       633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~  704 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT  704 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred             cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence            3444555555555555555555555555555555555544 3444444 55555555555555555554443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=2e-22  Score=193.62  Aligned_cols=163  Identities=25%  Similarity=0.296  Sum_probs=103.5

Q ss_pred             CEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcc
Q 040888           70 SVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLG  147 (495)
Q Consensus        70 ~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~  147 (495)
                      .++.|+|++|++++..+..|.++++|++|+|++|.++...+..+.  ++|++|+|++|++++..+..+..+++|++|+|+
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            356666666666665555666777777777777766633322222  667777777777766555566667777777777


Q ss_pred             cCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcccC
Q 040888          148 SNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWV  225 (495)
Q Consensus       148 ~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~~  225 (495)
                      +|++++..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|++++.. ..+..++ |+.|++++|.+++..
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence            77776666666666777777777777776555555666677777777777766655 3345554 677777777766544


Q ss_pred             chhhhhc
Q 040888          226 PEELKDI  232 (495)
Q Consensus       226 p~~l~~l  232 (495)
                      +..+..+
T Consensus       198 ~~~~~~l  204 (270)
T 2o6q_A          198 EGAFDSL  204 (270)
T ss_dssp             TTTTTTC
T ss_pred             HHHhccc
Confidence            4444433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=2e-23  Score=205.16  Aligned_cols=165  Identities=27%  Similarity=0.481  Sum_probs=110.0

Q ss_pred             CCEeEEEcCC-CCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEE
Q 040888           69 SSVTEIKLSG-LGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLN  145 (495)
Q Consensus        69 ~~v~~l~L~~-n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  145 (495)
                      .+++.|+|++ |.+.+.+|..|+++++|++|+|++|.+++.+|..+.  ++|++|+|++|.+++.+|..+..+++|++|+
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  155 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence            4677777774 777777777777777777777777777777776554  6777777777777777777777777777777


Q ss_pred             cccCcCCCccchhhhCCC-CCcEEEccCCcCCCcCccc-----------------------ccCCCCCCEEeccCCcccc
Q 040888          146 LGSNQLNGQLSDMFQKNE-KLETLDLSKNQLTGELPRS-----------------------FASLSSLKKLYLQNNQFTG  201 (495)
Q Consensus       146 L~~N~l~g~~p~~~~~l~-~L~~L~ls~N~l~g~~p~~-----------------------~~~l~~L~~L~l~~N~l~g  201 (495)
                      |++|+++|.+|..+..+. +|+.|+|++|++++.+|..                       +..+++|+.|+|++|++++
T Consensus       156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  235 (313)
T 1ogq_A          156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence            777777666666666665 6666666666666555544                       4455555555555555555


Q ss_pred             cccccCCcc-CcEEEeecCCCcccCchhhhhcc
Q 040888          202 SINVLGKLP-LDELNVENNKFSGWVPEELKDIA  233 (495)
Q Consensus       202 ~~~~~~~~~-L~~l~l~~N~l~g~~p~~l~~l~  233 (495)
                      .++.+..++ |+.|++++|.++|.+|..+..++
T Consensus       236 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  268 (313)
T 1ogq_A          236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK  268 (313)
T ss_dssp             BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred             ecCcccccCCCCEEECcCCcccCcCChHHhcCc
Confidence            554444444 67777777777777776666554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=5.7e-22  Score=188.40  Aligned_cols=168  Identities=24%  Similarity=0.325  Sum_probs=88.9

Q ss_pred             CcccEEecCCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccC
Q 040888           60 HWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQ  137 (495)
Q Consensus        60 ~w~gv~c~~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~  137 (495)
                      .|.|..|. ...+.+++++++++ .+|..+.  ++|+.|+|++|.+.+..|..+.  ++|++|+|++|+|++..|..|..
T Consensus         6 ~~~gC~C~-~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   81 (251)
T 3m19_A            6 TVTGCTCN-EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD   81 (251)
T ss_dssp             HHHSSEEE-GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             CCCceEcC-CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc
Confidence            56666663 23344555555554 2333332  3555555555555554444443  55555555555555555555555


Q ss_pred             CCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCccccccc-ccCCcc-CcEEE
Q 040888          138 MSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSIN-VLGKLP-LDELN  215 (495)
Q Consensus       138 l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~-~~~~~~-L~~l~  215 (495)
                      +++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++++.++ .+..++ |+.|+
T Consensus        82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  161 (251)
T 3m19_A           82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS  161 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence            5555555555555555555555555555555555555554444445555555555555555554442 344444 55555


Q ss_pred             eecCCCcccCchhhhh
Q 040888          216 VENNKFSGWVPEELKD  231 (495)
Q Consensus       216 l~~N~l~g~~p~~l~~  231 (495)
                      +++|.+++..|..+..
T Consensus       162 L~~N~l~~~~~~~~~~  177 (251)
T 3m19_A          162 LSTNQLQSVPHGAFDR  177 (251)
T ss_dssp             CCSSCCSCCCTTTTTT
T ss_pred             CCCCcCCccCHHHHhC
Confidence            5555555544444433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=9.1e-22  Score=186.98  Aligned_cols=166  Identities=25%  Similarity=0.374  Sum_probs=150.0

Q ss_pred             CcccEEecC-----------CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCc
Q 040888           60 HWKGITCSG-----------SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQ  126 (495)
Q Consensus        60 ~w~gv~c~~-----------~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~  126 (495)
                      .|..+.|..           ..++.|+|++|++++..+..|.++++|++|+|++|.+++..|..+.  ++|++|+|++|+
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   94 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ   94 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence            466677753           3689999999999999999999999999999999999987776665  899999999999


Q ss_pred             CCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cc
Q 040888          127 FSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NV  205 (495)
Q Consensus       127 l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~  205 (495)
                      +++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++++.+ ..
T Consensus        95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  174 (251)
T 3m19_A           95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA  174 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence            99888888999999999999999999888888999999999999999999877778999999999999999999877 46


Q ss_pred             cCCcc-CcEEEeecCCCcccC
Q 040888          206 LGKLP-LDELNVENNKFSGWV  225 (495)
Q Consensus       206 ~~~~~-L~~l~l~~N~l~g~~  225 (495)
                      +..++ |+.|++++|++++..
T Consensus       175 ~~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          175 FDRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             TTTCTTCCEEECCSCCBCTTS
T ss_pred             HhCCCCCCEEEeeCCceeCCc
Confidence            77776 999999999999873

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=5.9e-22  Score=195.95  Aligned_cols=161  Identities=17%  Similarity=0.297  Sum_probs=93.1

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccC---------
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQ---------  137 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~---------  137 (495)
                      .+++.|+|++|.++ .+|..++++++|++|+|++|.++ .+|..+.  ++|++|+|++|++.+.+|..+..         
T Consensus       104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~  181 (328)
T 4fcg_A          104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG  181 (328)
T ss_dssp             TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred             CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence            35666666666666 55666666666666666666665 4554443  55666666666655555555443         


Q ss_pred             CCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEE
Q 040888          138 MSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELN  215 (495)
Q Consensus       138 l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~  215 (495)
                      +++|++|+|++|+|+ .+|..+..+++|++|+|++|.+++ +|..+..+++|+.|+|++|++.+.+ ..+..++ |+.|+
T Consensus       182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  259 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI  259 (328)
T ss_dssp             STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred             CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence            556666666666665 555555556666666666666653 4445555666666666665555555 3344444 56666


Q ss_pred             eecCCCcccCchhhhhcc
Q 040888          216 VENNKFSGWVPEELKDIA  233 (495)
Q Consensus       216 l~~N~l~g~~p~~l~~l~  233 (495)
                      +++|.+.+.+|..+.+++
T Consensus       260 L~~n~~~~~~p~~~~~l~  277 (328)
T 4fcg_A          260 LKDCSNLLTLPLDIHRLT  277 (328)
T ss_dssp             CTTCTTCCBCCTTGGGCT
T ss_pred             CCCCCchhhcchhhhcCC
Confidence            666555555655555444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.86  E-value=4.7e-21  Score=185.49  Aligned_cols=165  Identities=22%  Similarity=0.303  Sum_probs=147.9

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCc-CCCCcchhccCCCCCcEEE
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQ-FSGTVPYSISQMSELKYLN  145 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~L~  145 (495)
                      .+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..+.  ++|++|+|++|. ++...|..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            3689999999999998888899999999999999999987777776  899999999997 8777788999999999999


Q ss_pred             cccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcc
Q 040888          146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSG  223 (495)
Q Consensus       146 L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g  223 (495)
                      |++|.+++..|..+..+++|++|++++|++++..+..|..+++|+.|+|++|++++.. ..+..++ |+.|++++|.+++
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            9999999988999999999999999999999877778999999999999999999776 4577776 9999999999999


Q ss_pred             cCchhhhhcc
Q 040888          224 WVPEELKDIA  233 (495)
Q Consensus       224 ~~p~~l~~l~  233 (495)
                      ..|..+..++
T Consensus       192 ~~~~~~~~l~  201 (285)
T 1ozn_A          192 VHPHAFRDLG  201 (285)
T ss_dssp             ECTTTTTTCT
T ss_pred             cCHhHccCcc
Confidence            9888887665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.85  E-value=9.6e-21  Score=183.28  Aligned_cols=165  Identities=25%  Similarity=0.294  Sum_probs=149.4

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCC-CCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEE
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNN-LKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLN  145 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~-l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  145 (495)
                      .+++.|+|++|.+++..|..|.++++|++|+|++|. +....|..+.  ++|++|+|++|.+++..|..+.++++|++|+
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  135 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY  135 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence            689999999999999989999999999999999998 7665566665  8999999999999998899999999999999


Q ss_pred             cccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcc
Q 040888          146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSG  223 (495)
Q Consensus       146 L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g  223 (495)
                      |++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+++.. ..+..++ |+.|++++|.+++
T Consensus       136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  215 (285)
T 1ozn_A          136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA  215 (285)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence            9999999888888999999999999999999777778999999999999999999886 6677776 9999999999998


Q ss_pred             cCchhhhhcc
Q 040888          224 WVPEELKDIA  233 (495)
Q Consensus       224 ~~p~~l~~l~  233 (495)
                      ..+..+..++
T Consensus       216 ~~~~~~~~l~  225 (285)
T 1ozn_A          216 LPTEALAPLR  225 (285)
T ss_dssp             CCHHHHTTCT
T ss_pred             CCHHHcccCc
Confidence            7777777655

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=9.1e-21  Score=184.04  Aligned_cols=162  Identities=25%  Similarity=0.252  Sum_probs=144.5

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      ..++.|+|++|.+++..+..|.++++|+.|+|++|.+++..+....++|++|+|++|+|+ .+|..+..+++|++|+|++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~  109 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF  109 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCS
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCC
Confidence            468999999999999999999999999999999999997555444489999999999998 7888899999999999999


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcccCc
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVP  226 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~~p  226 (495)
                      |+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++.+ ..+..++ |+.|++++|.|+ .+|
T Consensus       110 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip  188 (290)
T 1p9a_G          110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP  188 (290)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred             CcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccC
Confidence            9999888899999999999999999999887888899999999999999999877 4556676 999999999998 567


Q ss_pred             hhhhhc
Q 040888          227 EELKDI  232 (495)
Q Consensus       227 ~~l~~l  232 (495)
                      ..+...
T Consensus       189 ~~~~~~  194 (290)
T 1p9a_G          189 KGFFGS  194 (290)
T ss_dssp             TTTTTT
T ss_pred             hhhccc
Confidence            665543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=3.1e-21  Score=188.73  Aligned_cols=178  Identities=23%  Similarity=0.309  Sum_probs=143.1

Q ss_pred             CCCCCCcccEEecC-----------CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCC--CCCCC--CCCCcE
Q 040888           55 DPCGEHWKGITCSG-----------SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDS--IPYQL--PPNLKH  119 (495)
Q Consensus        55 ~~C~~~w~gv~c~~-----------~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~--~p~~~--~~~L~~  119 (495)
                      +.|.|.|+++.|+.           .+++.|+|++|+++...+..|.++++|++|+|++|.++..  +|..+  .++|++
T Consensus         3 ~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~   82 (306)
T 2z66_A            3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY   82 (306)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred             CCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence            56777999999975           3689999999999965555689999999999999999832  23222  278999


Q ss_pred             EECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccc-hhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCc
Q 040888          120 LDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLS-DMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQ  198 (495)
Q Consensus       120 L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~  198 (495)
                      |+|++|.++ .+|..+..+++|++|+|++|++++..+ ..+..+++|++|++++|.+++..|..+..+++|++|+|++|.
T Consensus        83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  161 (306)
T 2z66_A           83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS  161 (306)
T ss_dssp             EECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred             EECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence            999999888 577778888888888888888887655 578888888888888888888888888888888888888888


Q ss_pred             cccc-c-cccCCcc-CcEEEeecCCCcccCchhhhhcc
Q 040888          199 FTGS-I-NVLGKLP-LDELNVENNKFSGWVPEELKDIA  233 (495)
Q Consensus       199 l~g~-~-~~~~~~~-L~~l~l~~N~l~g~~p~~l~~l~  233 (495)
                      +++. + ..+..++ |+.|++++|.+++..|..+..++
T Consensus       162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  199 (306)
T 2z66_A          162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS  199 (306)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence            8872 2 5566666 88888888888887777776655

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=2.4e-20  Score=173.53  Aligned_cols=157  Identities=22%  Similarity=0.343  Sum_probs=110.9

Q ss_pred             CCCCCCCcccEEecCCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCc
Q 040888           54 GDPCGEHWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTV  131 (495)
Q Consensus        54 ~~~C~~~w~gv~c~~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~  131 (495)
                      +..|.|.|..+.|..          ++++ .+|..+.  ++|+.|+|++|.+++..+..+.  ++|++|+|++|++++..
T Consensus         6 P~~C~C~~~~v~c~~----------~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~   72 (220)
T 2v9t_B            6 PAACTCSNNIVDCRG----------KGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA   72 (220)
T ss_dssp             CTTSEEETTEEECTT----------SCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCCEECCCEEEcCC----------CCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC
Confidence            456766777777754          3333 2344333  5677777777777755544444  67777888888777777


Q ss_pred             chhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc
Q 040888          132 PYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP  210 (495)
Q Consensus       132 p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~  210 (495)
                      |..|.++++|++|+|++|+|+...+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++.. ..+..++
T Consensus        73 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  152 (220)
T 2v9t_B           73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR  152 (220)
T ss_dssp             TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC
Confidence            777777788888888888877666666777777888888888887777777777778888888888777766 4455555


Q ss_pred             -CcEEEeecCCCcc
Q 040888          211 -LDELNVENNKFSG  223 (495)
Q Consensus       211 -L~~l~l~~N~l~g  223 (495)
                       |+.|++++|++..
T Consensus       153 ~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          153 AIQTMHLAQNPFIC  166 (220)
T ss_dssp             TCCEEECCSSCEEC
T ss_pred             CCCEEEeCCCCcCC
Confidence             7778888887765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.84  E-value=5e-20  Score=177.08  Aligned_cols=156  Identities=31%  Similarity=0.400  Sum_probs=126.1

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNL  146 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  146 (495)
                      .+++.|+|++|.+++.  +.+.++++|++|+|++|.+++..|..+.  ++|++|+|++|++++..|..+..+++|++|+|
T Consensus        63 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  140 (272)
T 3rfs_A           63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL  140 (272)
T ss_dssp             TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence            6788888888888873  4688888888888888888866665443  78888888888888777777888888888888


Q ss_pred             ccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCccc
Q 040888          147 GSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGW  224 (495)
Q Consensus       147 ~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~  224 (495)
                      ++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|+|++|++++.+ ..+..++ |+.|++++|.+.+.
T Consensus       141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence            888888777777888888888888888888777777788888888888888888776 4456666 88888888888877


Q ss_pred             Cc
Q 040888          225 VP  226 (495)
Q Consensus       225 ~p  226 (495)
                      .|
T Consensus       221 ~~  222 (272)
T 3rfs_A          221 CP  222 (272)
T ss_dssp             TT
T ss_pred             Cc
Confidence            66

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=1.8e-20  Score=174.32  Aligned_cols=151  Identities=26%  Similarity=0.303  Sum_probs=124.6

Q ss_pred             EEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCC-CC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccC
Q 040888           73 EIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQ-LP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSN  149 (495)
Q Consensus        73 ~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~-~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N  149 (495)
                      .+++++|.++. +|..+.  ..+++|+|++|.+++..|.. +.  ++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus        15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            45566677764 565553  34689999999998776643 32  88999999999999877778999999999999999


Q ss_pred             cCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcccCc
Q 040888          150 QLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVP  226 (495)
Q Consensus       150 ~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~~p  226 (495)
                      +|++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++.. ..+..++ |+.|++++|.+++..+
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            999888888999999999999999999888888999999999999999999875 5677776 8999999999987655

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.83  E-value=2e-20  Score=180.18  Aligned_cols=161  Identities=21%  Similarity=0.221  Sum_probs=138.2

Q ss_pred             CEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcc
Q 040888           70 SVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLG  147 (495)
Q Consensus        70 ~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~  147 (495)
                      +++.|+|++|.+++..+..|.++++|++|+|++|.+.+..+..+.  ++|++|+|++|.+++..|..+.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            589999999999988888999999999999999999876665555  899999999999998888899999999999999


Q ss_pred             cCcCCCccchhhhCCCCCcEEEccCCcCCCc-CcccccCCCCCCEEeccCCcccccc-cccCCcc-Cc----EEEeecCC
Q 040888          148 SNQLNGQLSDMFQKNEKLETLDLSKNQLTGE-LPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LD----ELNVENNK  220 (495)
Q Consensus       148 ~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~-~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~----~l~l~~N~  220 (495)
                      +|++++..+..+..+++|++|++++|.+++. +|..+.++++|+.|+|++|++++.. ..+..+. |+    .|++++|.
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~  188 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence            9999988777899999999999999999874 6899999999999999999998765 3444333 44    78999999


Q ss_pred             CcccCchhhh
Q 040888          221 FSGWVPEELK  230 (495)
Q Consensus       221 l~g~~p~~l~  230 (495)
                      +++..+..+.
T Consensus       189 l~~~~~~~~~  198 (276)
T 2z62_A          189 MNFIQPGAFK  198 (276)
T ss_dssp             CCEECTTSSC
T ss_pred             ccccCccccC
Confidence            9876665444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.83  E-value=4.8e-20  Score=172.57  Aligned_cols=158  Identities=25%  Similarity=0.328  Sum_probs=118.8

Q ss_pred             CCCCCCCCcccEEecCCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCC
Q 040888           53 GGDPCGEHWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGT  130 (495)
Q Consensus        53 ~~~~C~~~w~gv~c~~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~  130 (495)
                      +...|  +|++|.|+..+++           .+|..+.  ++|++|+|++|.+++..|..+.  ++|++|+|++|+|++.
T Consensus        15 ~~~~C--s~~~v~c~~~~l~-----------~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i   79 (229)
T 3e6j_A           15 SQCSC--SGTTVDCRSKRHA-----------SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL   79 (229)
T ss_dssp             TTCEE--ETTEEECTTSCCS-----------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCCEE--eCCEeEccCCCcC-----------ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc
Confidence            44566  8999999754332           3344332  6788888888888877676654  7888888888888766


Q ss_pred             cchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCc
Q 040888          131 VPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKL  209 (495)
Q Consensus       131 ~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~  209 (495)
                      .+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|++.. ..+..+
T Consensus        80 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  158 (229)
T 3e6j_A           80 PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL  158 (229)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred             ChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCC
Confidence            5566788888888888888888777777788888888888888887 67777888888888888888888766 456666


Q ss_pred             c-CcEEEeecCCCcccCc
Q 040888          210 P-LDELNVENNKFSGWVP  226 (495)
Q Consensus       210 ~-L~~l~l~~N~l~g~~p  226 (495)
                      + |+.|++++|.+.+..+
T Consensus       159 ~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          159 SSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TTCCEEECTTSCBCTTBG
T ss_pred             CCCCEEEeeCCCccCCcc
Confidence            5 8888888888877654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.83  E-value=1.2e-19  Score=174.35  Aligned_cols=171  Identities=26%  Similarity=0.331  Sum_probs=146.8

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      .+++.|++.+|.+...  +.+..+++|++|+|++|.+.+.-...-.++|++|+|++|.+++..+..+.++++|++|+|++
T Consensus        41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  118 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE  118 (272)
T ss_dssp             TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence            5799999999998743  35889999999999999999742112228999999999999988888899999999999999


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcccCc
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVP  226 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~~p  226 (495)
                      |++++..+..|..+++|++|+|++|++++..|..+..+++|+.|++++|++++.+ ..+..++ |+.|++++|.+++..|
T Consensus       119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            9999988888999999999999999999888888899999999999999999877 4467776 9999999999999888


Q ss_pred             hhhhhcc-----cCCCCcCC
Q 040888          227 EELKDIA-----KTGGNSWS  241 (495)
Q Consensus       227 ~~l~~l~-----~~~~n~~~  241 (495)
                      ..+..++     .+.+|++.
T Consensus       199 ~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          199 GVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCBC
T ss_pred             HHHhCCcCCCEEEccCCCcc
Confidence            7776655     34455544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.82  E-value=5e-20  Score=191.49  Aligned_cols=174  Identities=20%  Similarity=0.248  Sum_probs=152.3

Q ss_pred             CcccEEecC-----------CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCc
Q 040888           60 HWKGITCSG-----------SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQ  126 (495)
Q Consensus        60 ~w~gv~c~~-----------~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~  126 (495)
                      .|..|.|..           ..++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..+.  ++|++|+|++|+
T Consensus        12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            577888864           3688999999999999899999999999999999999988787776  899999999999


Q ss_pred             CCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cc
Q 040888          127 FSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NV  205 (495)
Q Consensus       127 l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~  205 (495)
                      +++..+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|.+++..|..|.++++|+.|+|++|++++.. ..
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  171 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA  171 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence            99766677899999999999999999999999999999999999999999888889999999999999999998876 45


Q ss_pred             cCCcc-CcEEEeecCCCcccCchhhhhcc
Q 040888          206 LGKLP-LDELNVENNKFSGWVPEELKDIA  233 (495)
Q Consensus       206 ~~~~~-L~~l~l~~N~l~g~~p~~l~~l~  233 (495)
                      +..++ |+.|++++|.+++..+..+..+.
T Consensus       172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~  200 (477)
T 2id5_A          172 LSHLHGLIVLRLRHLNINAIRDYSFKRLY  200 (477)
T ss_dssp             HTTCTTCCEEEEESCCCCEECTTCSCSCT
T ss_pred             hcccCCCcEEeCCCCcCcEeChhhcccCc
Confidence            66666 88999999988887766665543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.82  E-value=2.6e-20  Score=192.28  Aligned_cols=178  Identities=21%  Similarity=0.257  Sum_probs=148.6

Q ss_pred             CCCCCCCcccEEecC----------CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCC-CC--CCCcEE
Q 040888           54 GDPCGEHWKGITCSG----------SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQ-LP--PNLKHL  120 (495)
Q Consensus        54 ~~~C~~~w~gv~c~~----------~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~-~~--~~L~~L  120 (495)
                      .+.|.+.+..+.|+.          .+++.|+|++|.+++..|..|+++++|++|+|++|.+.+.+|.. +.  ++|++|
T Consensus         5 ~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L   84 (455)
T 3v47_A            5 TSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL   84 (455)
T ss_dssp             --CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEE
T ss_pred             cceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEE
Confidence            345533344488874          35899999999999999999999999999999999998877643 44  899999


Q ss_pred             ECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchh--hhCCCCCcEEEccCCcCCCcCccc-ccCCCCCCEEeccCC
Q 040888          121 DLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDM--FQKNEKLETLDLSKNQLTGELPRS-FASLSSLKKLYLQNN  197 (495)
Q Consensus       121 ~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~--~~~l~~L~~L~ls~N~l~g~~p~~-~~~l~~L~~L~l~~N  197 (495)
                      +|++|++++..|..|+++++|++|+|++|++++.+|..  +..+++|++|+|++|++++..|.. +.++++|++|++++|
T Consensus        85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  164 (455)
T 3v47_A           85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN  164 (455)
T ss_dssp             ECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred             eCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence            99999999989999999999999999999999876665  999999999999999999888876 899999999999999


Q ss_pred             cccccc-cccCCc----------------------------------c-CcEEEeecCCCcccCchhhhh
Q 040888          198 QFTGSI-NVLGKL----------------------------------P-LDELNVENNKFSGWVPEELKD  231 (495)
Q Consensus       198 ~l~g~~-~~~~~~----------------------------------~-L~~l~l~~N~l~g~~p~~l~~  231 (495)
                      ++++.. ..+..+                                  + |+.|++++|.+++.+|..+..
T Consensus       165 ~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  234 (455)
T 3v47_A          165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD  234 (455)
T ss_dssp             CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred             cccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence            998765 333222                                  2 777888888887777776654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.82  E-value=7.3e-20  Score=176.21  Aligned_cols=174  Identities=20%  Similarity=0.267  Sum_probs=149.6

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNL  146 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  146 (495)
                      .+++.|+|++|.+++..+..|.++++|++|+|++|.+.+..|..+.  ++|++|+|++|++++..+..+..+++|++|+|
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  131 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  131 (276)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred             cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence            6899999999999988888999999999999999999987766665  89999999999999888778999999999999


Q ss_pred             ccCcCCC-ccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCC----EEeccCCccccccc-ccCCccCcEEEeecCC
Q 040888          147 GSNQLNG-QLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLK----KLYLQNNQFTGSIN-VLGKLPLDELNVENNK  220 (495)
Q Consensus       147 ~~N~l~g-~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~----~L~l~~N~l~g~~~-~~~~~~L~~l~l~~N~  220 (495)
                      ++|++++ .+|..+..+++|+.|+|++|++++..+..+..+.+|+    .|++++|.+++... .+....|+.|++++|.
T Consensus       132 ~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~  211 (276)
T 2z62_A          132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ  211 (276)
T ss_dssp             CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC
T ss_pred             cCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCc
Confidence            9999987 4699999999999999999999988888887777777    89999999998773 4444459999999999


Q ss_pred             CcccCchhhhhcc-----cCCCCcCCC
Q 040888          221 FSGWVPEELKDIA-----KTGGNSWSS  242 (495)
Q Consensus       221 l~g~~p~~l~~l~-----~~~~n~~~~  242 (495)
                      +++..+..+..++     .+.+|++.|
T Consensus       212 l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          212 LKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             eeecCHhHhcccccccEEEccCCcccc
Confidence            9977666666554     345666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=1.7e-19  Score=167.71  Aligned_cols=150  Identities=23%  Similarity=0.287  Sum_probs=135.9

Q ss_pred             CCCCCCCcccEEecC-----------CCEeEEEcCCCCCccccc-cccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcE
Q 040888           54 GDPCGEHWKGITCSG-----------SSVTEIKLSGLGLNGQLG-YQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKH  119 (495)
Q Consensus        54 ~~~C~~~w~gv~c~~-----------~~v~~l~L~~n~l~g~~~-~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~  119 (495)
                      +..|.|.|..+.|+.           ..++.|+|++|.+++..+ ..|.++++|+.|+|++|.+++..|..+.  ++|++
T Consensus         6 P~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~   85 (220)
T 2v70_A            6 PEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE   85 (220)
T ss_dssp             CTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence            456778999999974           247899999999999865 4589999999999999999987775665  89999


Q ss_pred             EECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcc
Q 040888          120 LDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF  199 (495)
Q Consensus       120 L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l  199 (495)
                      |+|++|+|++..|..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|.+
T Consensus        86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            99999999998888899999999999999999999999999999999999999999999899999999999999999999


Q ss_pred             cccc
Q 040888          200 TGSI  203 (495)
Q Consensus       200 ~g~~  203 (495)
                      ++..
T Consensus       166 ~c~c  169 (220)
T 2v70_A          166 NCNC  169 (220)
T ss_dssp             ECSG
T ss_pred             cCCC
Confidence            8654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.82  E-value=1.5e-19  Score=186.63  Aligned_cols=179  Identities=20%  Similarity=0.266  Sum_probs=148.2

Q ss_pred             CCCCCC--CcccEEecC-----------CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCc
Q 040888           54 GDPCGE--HWKGITCSG-----------SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLK  118 (495)
Q Consensus        54 ~~~C~~--~w~gv~c~~-----------~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~  118 (495)
                      ...|.|  .|..|.|..           .+++.|+|++|++++..+..|.++++|+.|+|++|.+++..|..+.  ++|+
T Consensus        47 p~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  126 (452)
T 3zyi_A           47 PSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLN  126 (452)
T ss_dssp             CTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCC
Confidence            344544  467888864           3689999999999999999999999999999999999987777766  8999


Q ss_pred             EEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCc-ccccCCCCCCEEeccCC
Q 040888          119 HLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELP-RSFASLSSLKKLYLQNN  197 (495)
Q Consensus       119 ~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p-~~~~~l~~L~~L~l~~N  197 (495)
                      +|+|++|++++..+..|..+++|++|+|++|+|+...+..|..+++|+.|+|++|+..+.+| ..|.++++|+.|+|++|
T Consensus       127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  206 (452)
T 3zyi_A          127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC  206 (452)
T ss_dssp             EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence            99999999998777789999999999999999997777788889999999999854444444 46888888999999998


Q ss_pred             cccccccccCCcc-CcEEEeecCCCcccCchhhhhcc
Q 040888          198 QFTGSINVLGKLP-LDELNVENNKFSGWVPEELKDIA  233 (495)
Q Consensus       198 ~l~g~~~~~~~~~-L~~l~l~~N~l~g~~p~~l~~l~  233 (495)
                      ++++.. .+..++ |+.|++++|.+++..|..|..++
T Consensus       207 ~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  242 (452)
T 3zyi_A          207 NIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS  242 (452)
T ss_dssp             CCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCT
T ss_pred             cccccc-cccccccccEEECcCCcCcccCcccccCcc
Confidence            888653 445555 88888888888888888777665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.81  E-value=1.1e-19  Score=186.98  Aligned_cols=180  Identities=19%  Similarity=0.256  Sum_probs=120.7

Q ss_pred             CcccEEecC-----------CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCc
Q 040888           60 HWKGITCSG-----------SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQ  126 (495)
Q Consensus        60 ~w~gv~c~~-----------~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~  126 (495)
                      .|..|.|..           ..++.|+|++|++++..+..|.++++|++|+|++|.+.+..+..+.  ++|++|+|++|+
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            356777754           2467777777777777777777777777777777777654444443  667777777777


Q ss_pred             CCCCcchhccCCCCCcEEEcccCcCCCccch-------------------------hhhCCCCCcEEEccCCcCCCcCcc
Q 040888          127 FSGTVPYSISQMSELKYLNLGSNQLNGQLSD-------------------------MFQKNEKLETLDLSKNQLTGELPR  181 (495)
Q Consensus       127 l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~-------------------------~~~~l~~L~~L~ls~N~l~g~~p~  181 (495)
                      |++..+..|..+++|++|+|++|+|+...+.                         .|.++++|++|+|++|+++ .+| 
T Consensus       124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-  201 (440)
T 3zyj_A          124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-  201 (440)
T ss_dssp             CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-
T ss_pred             CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-
Confidence            7655555566666666666666666544333                         4555666666666666666 344 


Q ss_pred             cccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcccCchhhhhcc-----cCCCCcCC
Q 040888          182 SFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVPEELKDIA-----KTGGNSWS  241 (495)
Q Consensus       182 ~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~~p~~l~~l~-----~~~~n~~~  241 (495)
                      .+..+++|+.|+|++|++++.. ..+..++ |+.|++++|.+++..|..|.+++     .+.+|.+.
T Consensus       202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  268 (440)
T 3zyj_A          202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT  268 (440)
T ss_dssp             CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred             ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence            3666777777888888877765 5566666 89999999999988887776655     34455544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.81  E-value=4.5e-20  Score=180.43  Aligned_cols=161  Identities=24%  Similarity=0.316  Sum_probs=77.3

Q ss_pred             CCEeEEEcCCCCCcc--ccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcc-hhccCCCCCcE
Q 040888           69 SSVTEIKLSGLGLNG--QLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVP-YSISQMSELKY  143 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g--~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~  143 (495)
                      .+++.|+|++|.++.  ..+..+..+++|++|+|++|.+.+ +|..+.  ++|++|+|++|++++..+ ..+..+++|++
T Consensus        52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  130 (306)
T 2z66_A           52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  130 (306)
T ss_dssp             TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCE
T ss_pred             ccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCE
Confidence            345555555555542  223444445555555555555442 222221  455555555555543333 34445555555


Q ss_pred             EEcccCcCCCccchhhhCCCCCcEEEccCCcCCC-cCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCC
Q 040888          144 LNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTG-ELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNK  220 (495)
Q Consensus       144 L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~  220 (495)
                      |+|++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|+.|+|++|++++.. ..+..++ |+.|++++|.
T Consensus       131 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  210 (306)
T 2z66_A          131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN  210 (306)
T ss_dssp             EECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence            5555555554444445555555555555555544 34444555555555555555555443 3333333 5555555555


Q ss_pred             CcccCchhhh
Q 040888          221 FSGWVPEELK  230 (495)
Q Consensus       221 l~g~~p~~l~  230 (495)
                      +++..+..+.
T Consensus       211 l~~~~~~~~~  220 (306)
T 2z66_A          211 FFSLDTFPYK  220 (306)
T ss_dssp             CSBCCSGGGT
T ss_pred             cCccChhhcc
Confidence            5544443333

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.81  E-value=2.4e-19  Score=177.40  Aligned_cols=177  Identities=20%  Similarity=0.284  Sum_probs=111.1

Q ss_pred             CCCCCCCcccEEecC-----------CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEE
Q 040888           54 GDPCGEHWKGITCSG-----------SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHL  120 (495)
Q Consensus        54 ~~~C~~~w~gv~c~~-----------~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L  120 (495)
                      +..|.|.|..+.|+.           .+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..+.  ++|++|
T Consensus        28 p~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           28 PFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL  107 (332)
T ss_dssp             CSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred             CCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence            345656899999863           2577888888888877777777777788888877777766565554  666666


Q ss_pred             ECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCC--CcCcccccCC------------
Q 040888          121 DLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLT--GELPRSFASL------------  186 (495)
Q Consensus       121 ~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~--g~~p~~~~~l------------  186 (495)
                      +|++|+++ .+|..+.  ++|++|+|++|++++..+..|..+++|+.|++++|.++  +..|..+..+            
T Consensus       108 ~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l  184 (332)
T 2ft3_A          108 YISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL  184 (332)
T ss_dssp             ECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBC
T ss_pred             ECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCC
Confidence            66666666 4444433  55666666666666555555555666666666666553  2333333322            


Q ss_pred             --------CCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcccCchhhhhcc
Q 040888          187 --------SSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVPEELKDIA  233 (495)
Q Consensus       187 --------~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~~p~~l~~l~  233 (495)
                              ++|+.|++++|.+++.. ..+..++ |+.|++++|.+++..|..+..++
T Consensus       185 ~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~  241 (332)
T 2ft3_A          185 TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP  241 (332)
T ss_dssp             SSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT
T ss_pred             CccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC
Confidence                    35556666666666555 4455555 77777777777766665665544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.81  E-value=4.6e-19  Score=175.14  Aligned_cols=184  Identities=20%  Similarity=0.276  Sum_probs=150.0

Q ss_pred             CCCCCCCCCCCCCCCcccEEecC-----------CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC
Q 040888           46 LSNWKAGGGDPCGEHWKGITCSG-----------SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP  114 (495)
Q Consensus        46 l~~w~~~~~~~C~~~w~gv~c~~-----------~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~  114 (495)
                      +..|.......|.|.|+.+.|+.           ..++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..+.
T Consensus        18 i~~~~~~cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (330)
T 1xku_A           18 IEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA   97 (330)
T ss_dssp             ----CCCCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT
T ss_pred             cccccCCCCCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc
Confidence            34565444456767899999974           3688999999999998888999999999999999999988787776


Q ss_pred             --CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCC--cCcccccCCCCCC
Q 040888          115 --PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTG--ELPRSFASLSSLK  190 (495)
Q Consensus       115 --~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g--~~p~~~~~l~~L~  190 (495)
                        ++|++|+|++|+++ .+|..+.  ++|++|++++|++++..+..+..+++|+.|++++|.++.  ..+..+.++++|+
T Consensus        98 ~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  174 (330)
T 1xku_A           98 PLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  174 (330)
T ss_dssp             TCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             CCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence              89999999999998 6676654  789999999999998888889999999999999999863  6778888999999


Q ss_pred             EEeccCCcccccccccCCccCcEEEeecCCCcccCchhhhhcc
Q 040888          191 KLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDIA  233 (495)
Q Consensus       191 ~L~l~~N~l~g~~~~~~~~~L~~l~l~~N~l~g~~p~~l~~l~  233 (495)
                      .|++++|.++.....+. ..|+.|++++|.+++..|..+..++
T Consensus       175 ~L~l~~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~  216 (330)
T 1xku_A          175 YIRIADTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLN  216 (330)
T ss_dssp             EEECCSSCCCSCCSSCC-TTCSEEECTTSCCCEECTGGGTTCT
T ss_pred             EEECCCCccccCCcccc-ccCCEEECCCCcCCccCHHHhcCCC
Confidence            99999999886553332 2388899999998888887777655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.81  E-value=8e-20  Score=166.23  Aligned_cols=129  Identities=29%  Similarity=0.445  Sum_probs=102.9

Q ss_pred             eEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCC-CC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           72 TEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQ-LP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        72 ~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~-~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      +.+++++|++ +.+|..+..  +|++|+|++|.+++..+.. +.  ++|++|+|++|+|++..|..|.++++|++|+|++
T Consensus        11 ~~l~~s~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGL-KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCC-SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCc-CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            3455566666 356655543  7888899998888665543 33  7888888888888888888888888888888888


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI  203 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~  203 (495)
                      |+|++..|..|..+++|++|+|++|+|++.+|..|..+++|++|+|++|.+++..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            8888888888888888888888888888888888888888888888888888654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=7.4e-20  Score=183.34  Aligned_cols=165  Identities=28%  Similarity=0.353  Sum_probs=88.9

Q ss_pred             CCCCCCCcccEEecCCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC---CCCcEEECcCCcCCCC
Q 040888           54 GDPCGEHWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP---PNLKHLDLSENQFSGT  130 (495)
Q Consensus        54 ~~~C~~~w~gv~c~~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~---~~L~~L~Ls~N~l~g~  130 (495)
                      +..|.|.+..+.|          ++++|+. +|..+.  +.++.|+|++|+|++..+..+.   ++|++|+|++|+|++.
T Consensus        13 p~~C~C~~~~l~c----------~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i   79 (361)
T 2xot_A           13 PANCLCASNILSC----------SKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI   79 (361)
T ss_dssp             CTTCEEETTEEEC----------CSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE
T ss_pred             CCCCEECCCEEEe----------CCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc
Confidence            3446555555555          4444443 333332  2355666666666544443331   5566666666666655


Q ss_pred             cchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCccccccc-cc---
Q 040888          131 VPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSIN-VL---  206 (495)
Q Consensus       131 ~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~-~~---  206 (495)
                      .|..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++... .+   
T Consensus        80 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~  159 (361)
T 2xot_A           80 SSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG  159 (361)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC--
T ss_pred             ChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCc
Confidence            55556666666666666666665555555666666666666666665555556666666666666666655442 22   


Q ss_pred             CCcc-CcEEEeecCCCcccCchhhhh
Q 040888          207 GKLP-LDELNVENNKFSGWVPEELKD  231 (495)
Q Consensus       207 ~~~~-L~~l~l~~N~l~g~~p~~l~~  231 (495)
                      ..++ |+.|+|++|.|++..+..+..
T Consensus       160 ~~l~~L~~L~L~~N~l~~l~~~~~~~  185 (361)
T 2xot_A          160 NKLPKLMLLDLSSNKLKKLPLTDLQK  185 (361)
T ss_dssp             --CTTCCEEECCSSCCCCCCHHHHHH
T ss_pred             ccCCcCCEEECCCCCCCccCHHHhhh
Confidence            2233 566666666665544444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.81  E-value=5.9e-19  Score=169.41  Aligned_cols=158  Identities=27%  Similarity=0.331  Sum_probs=141.5

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNL  146 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  146 (495)
                      .+++.|+|++|.++...+..|.++++|++|+|++|.+.+..+..+.  ++|++|+|++|++++..|..|..+++|++|+|
T Consensus        61 ~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  140 (270)
T 2o6q_A           61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL  140 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEEC
Confidence            6899999999999977777789999999999999999965554444  89999999999999988888999999999999


Q ss_pred             ccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCccc
Q 040888          147 GSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGW  224 (495)
Q Consensus       147 ~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~  224 (495)
                      ++|.|++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++.. ..+..++ |+.|++++|++...
T Consensus       141 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            999999888888999999999999999999887778999999999999999999877 4566666 99999999999765


Q ss_pred             Cc
Q 040888          225 VP  226 (495)
Q Consensus       225 ~p  226 (495)
                      .+
T Consensus       221 c~  222 (270)
T 2o6q_A          221 CN  222 (270)
T ss_dssp             SS
T ss_pred             Cc
Confidence            43

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.80  E-value=3.5e-19  Score=183.77  Aligned_cols=103  Identities=21%  Similarity=0.280  Sum_probs=85.8

Q ss_pred             CCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEe
Q 040888          139 SELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNV  216 (495)
Q Consensus       139 ~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l  216 (495)
                      ++|+.|+|++|++++.+|..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|.+++.. ..+..++ |+.|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            46777777888888888889999999999999999999888889999999999999999998776 5667776 999999


Q ss_pred             ecCCCcccCchhhhhcc-----cCCCCcCC
Q 040888          217 ENNKFSGWVPEELKDIA-----KTGGNSWS  241 (495)
Q Consensus       217 ~~N~l~g~~p~~l~~l~-----~~~~n~~~  241 (495)
                      ++|.+++..|..+..++     .+.+|.+.
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  384 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLK  384 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCcccccChhhccccccccEEECCCCccc
Confidence            99999988888887765     34455554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.80  E-value=1.6e-19  Score=180.26  Aligned_cols=168  Identities=22%  Similarity=0.271  Sum_probs=144.9

Q ss_pred             CCcccEEecC-------------CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECc
Q 040888           59 EHWKGITCSG-------------SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLS  123 (495)
Q Consensus        59 ~~w~gv~c~~-------------~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls  123 (495)
                      |.|.|+ |+.             .+++.|+|++|++++..+..|.++++|++|+|++|.+++..|..+.  ++|++|+|+
T Consensus        30 C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (353)
T 2z80_A           30 CDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS  108 (353)
T ss_dssp             ECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence            378887 653             3699999999999988777899999999999999999987776665  899999999


Q ss_pred             CCcCCCCcchhccCCCCCcEEEcccCcCCCccc-hhhhCCCCCcEEEccCCc-CCCcCcccccCCCCCCEEeccCCcccc
Q 040888          124 ENQFSGTVPYSISQMSELKYLNLGSNQLNGQLS-DMFQKNEKLETLDLSKNQ-LTGELPRSFASLSSLKKLYLQNNQFTG  201 (495)
Q Consensus       124 ~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p-~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~l~~L~~L~l~~N~l~g  201 (495)
                      +|++++..+..+.++++|++|+|++|++++..+ ..+..+++|++|++++|+ +++..|..+.++++|+.|++++|++++
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence            999997666669999999999999999996544 478999999999999994 776677889999999999999999998


Q ss_pred             cc-cccCCcc-CcEEEeecCCCcccCchh
Q 040888          202 SI-NVLGKLP-LDELNVENNKFSGWVPEE  228 (495)
Q Consensus       202 ~~-~~~~~~~-L~~l~l~~N~l~g~~p~~  228 (495)
                      .. ..+..++ |+.|++++|.++. +|..
T Consensus       189 ~~~~~l~~l~~L~~L~l~~n~l~~-~~~~  216 (353)
T 2z80_A          189 YEPKSLKSIQNVSHLILHMKQHIL-LLEI  216 (353)
T ss_dssp             ECTTTTTTCSEEEEEEEECSCSTT-HHHH
T ss_pred             cCHHHHhccccCCeecCCCCcccc-chhh
Confidence            76 6777777 9999999999864 4443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=1.4e-19  Score=170.35  Aligned_cols=176  Identities=22%  Similarity=0.324  Sum_probs=146.5

Q ss_pred             CCCCCCc-cc--EEecC--------CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCC-CCCCCCCCCC--CCCcEE
Q 040888           55 DPCGEHW-KG--ITCSG--------SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNN-LKDSIPYQLP--PNLKHL  120 (495)
Q Consensus        55 ~~C~~~w-~g--v~c~~--------~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~-l~g~~p~~~~--~~L~~L  120 (495)
                      +.|.|.+ .+  |.|..        ..++.|+|++|++++..+..|.++++|++|+|++|. +++..+..+.  ++|++|
T Consensus         6 ~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L   85 (239)
T 2xwt_C            6 PPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHI   85 (239)
T ss_dssp             SSCSEEECSTTEEEECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEE
T ss_pred             CCCeeCCCCcceeEccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEE
Confidence            4565543 44  45853        479999999999999888899999999999999997 7754444443  899999


Q ss_pred             ECcC-CcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCc---EEEccCC-cCCCcCcccccCCCCCC-EEec
Q 040888          121 DLSE-NQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLE---TLDLSKN-QLTGELPRSFASLSSLK-KLYL  194 (495)
Q Consensus       121 ~Ls~-N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~---~L~ls~N-~l~g~~p~~~~~l~~L~-~L~l  194 (495)
                      +|++ |++++..+..|.++++|++|+|++|++++ +|. +..+++|+   +|++++| ++++..+..|..+++|+ .|++
T Consensus        86 ~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l  163 (239)
T 2xwt_C           86 EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL  163 (239)
T ss_dssp             EEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred             ECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence            9999 99997777889999999999999999997 676 88888888   9999999 99977777899999999 9999


Q ss_pred             cCCccccccc-ccCCccCcEEEeecCC-CcccCchhhhhc
Q 040888          195 QNNQFTGSIN-VLGKLPLDELNVENNK-FSGWVPEELKDI  232 (495)
Q Consensus       195 ~~N~l~g~~~-~~~~~~L~~l~l~~N~-l~g~~p~~l~~l  232 (495)
                      ++|+++.... .+....|+.|++++|. +++..+..+..+
T Consensus       164 ~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l  203 (239)
T 2xwt_C          164 YNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV  203 (239)
T ss_dssp             CSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTC
T ss_pred             CCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhcc
Confidence            9999985443 3444349999999995 987777777766

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=3.2e-19  Score=190.67  Aligned_cols=131  Identities=21%  Similarity=0.292  Sum_probs=70.9

Q ss_pred             EeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           71 VTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        71 v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      ++.+++++|.+....+..+.++++|++|+|++|.+.+..|..+.  ++|++|+|++|.+++..|..|+++++|++|+|++
T Consensus        53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  132 (597)
T 3oja_B           53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER  132 (597)
T ss_dssp             CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC
Confidence            45555555555544444455555555555555555544443433  4555555555555555555555555555555555


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccc
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG  201 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g  201 (495)
                      |.|++..+..|.++++|++|+|++|.+++..|..|..+++|+.|+|++|.+++
T Consensus       133 n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            55554444444555555555555555555555555555555555555555543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.80  E-value=2.7e-19  Score=194.22  Aligned_cols=177  Identities=26%  Similarity=0.335  Sum_probs=153.9

Q ss_pred             CCCCcccEEecC-----------CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECc
Q 040888           57 CGEHWKGITCSG-----------SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLS  123 (495)
Q Consensus        57 C~~~w~gv~c~~-----------~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls  123 (495)
                      |.+.+.-+.|+.           .+++.|+|++|.+++..+..|.++++|++|||++|.+++..|..+.  ++|++|+|+
T Consensus         2 C~~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~   81 (680)
T 1ziw_A            2 CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ   81 (680)
T ss_dssp             --CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred             ceeECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC
Confidence            444566666753           4799999999999998888999999999999999999988887665  899999999


Q ss_pred             CCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc
Q 040888          124 ENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI  203 (495)
Q Consensus       124 ~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~  203 (495)
                      +|++++..+..|+++++|++|+|++|++++..|..|.++++|++|+|++|.+++..|..+.++++|++|++++|.+++..
T Consensus        82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  161 (680)
T 1ziw_A           82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK  161 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred             CCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC
Confidence            99999766668999999999999999999888889999999999999999999999999999999999999999999877


Q ss_pred             -cccC--Cc-cCcEEEeecCCCcccCchhhhhcc
Q 040888          204 -NVLG--KL-PLDELNVENNKFSGWVPEELKDIA  233 (495)
Q Consensus       204 -~~~~--~~-~L~~l~l~~N~l~g~~p~~l~~l~  233 (495)
                       ..+.  .. .|+.|++++|.+++..|..+..+.
T Consensus       162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  195 (680)
T 1ziw_A          162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG  195 (680)
T ss_dssp             HHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSS
T ss_pred             HHHhhccccccccEEECCCCcccccChhhhhhhh
Confidence             3332  22 399999999999999888776543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.80  E-value=7.5e-20  Score=179.51  Aligned_cols=171  Identities=20%  Similarity=0.224  Sum_probs=123.7

Q ss_pred             CCEeEEEcCCCCCcccccccc--CCCCCCcEEECcCCCCCCCCCCCCC-------CCCcEEECcCCcCCCCcchhccCCC
Q 040888           69 SSVTEIKLSGLGLNGQLGYQL--TNLKSVSYLDVSNNNLKDSIPYQLP-------PNLKHLDLSENQFSGTVPYSISQMS  139 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~--~~l~~L~~L~Ls~N~l~g~~p~~~~-------~~L~~L~Ls~N~l~g~~p~~~~~l~  139 (495)
                      .+++.|+|++|.++|.+|..+  ..+++|++|+|++|.+++. |..+.       ++|++|+|++|++++..|..++.++
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            568888888888888888776  7888888888888888875 54332       6788888888888877778888888


Q ss_pred             CCcEEEcccCcCCCc--cchhh--hCCCCCcEEEccCCcCCC--cCc-ccccCCCCCCEEeccCCcccccc--cccCCcc
Q 040888          140 ELKYLNLGSNQLNGQ--LSDMF--QKNEKLETLDLSKNQLTG--ELP-RSFASLSSLKKLYLQNNQFTGSI--NVLGKLP  210 (495)
Q Consensus       140 ~L~~L~L~~N~l~g~--~p~~~--~~l~~L~~L~ls~N~l~g--~~p-~~~~~l~~L~~L~l~~N~l~g~~--~~~~~~~  210 (495)
                      +|++|+|++|++.|.  +|..+  ..+++|++|+|++|++++  .++ ..+.++++|+.|+|++|++++.+  ..+..++
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  253 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS  253 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence            888888888888765  33344  777888888888888873  222 33457788888888888888765  3444444


Q ss_pred             -CcEEEeecCCCcccCchhhh-hcc--cCCCCcCC
Q 040888          211 -LDELNVENNKFSGWVPEELK-DIA--KTGGNSWS  241 (495)
Q Consensus       211 -L~~l~l~~N~l~g~~p~~l~-~l~--~~~~n~~~  241 (495)
                       |+.|++++|.++ .+|..+. ++.  .+.+|.+.
T Consensus       254 ~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~l~  287 (312)
T 1wwl_A          254 QLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRLD  287 (312)
T ss_dssp             TCCEEECTTSCCS-SCCSSCCSEEEEEECCSSCCC
T ss_pred             CCCEEECCCCccC-hhhhhccCCceEEECCCCCCC
Confidence             888888888887 6666554 333  44555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=5.4e-19  Score=164.34  Aligned_cols=133  Identities=24%  Similarity=0.311  Sum_probs=96.4

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNL  146 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  146 (495)
                      ..++.|+|++|++++..+..|..+++|+.|+|++|.+++..|..+.  ++|++|+|++|+|+...+..|..+++|++|+|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            4577777777777776666777777777777777777766666555  67777777777777555555677777777777


Q ss_pred             ccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccc
Q 040888          147 GSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG  201 (495)
Q Consensus       147 ~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g  201 (495)
                      ++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|.+..
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            7777777777777777777777777777776666667777777777777777653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.80  E-value=4e-20  Score=199.05  Aligned_cols=152  Identities=20%  Similarity=0.329  Sum_probs=137.9

Q ss_pred             CCccccccccCCCCCCcEEECcCCCCCCC-----------------CCCCCC----CCCcEEECcCCcCCCCcchhccCC
Q 040888           80 GLNGQLGYQLTNLKSVSYLDVSNNNLKDS-----------------IPYQLP----PNLKHLDLSENQFSGTVPYSISQM  138 (495)
Q Consensus        80 ~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~-----------------~p~~~~----~~L~~L~Ls~N~l~g~~p~~~~~l  138 (495)
                      +++| +|..++++++|++|+|++|.++|.                 +|..+.    ++|++|+|++|++.|.+|..++++
T Consensus       194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  272 (636)
T 4eco_A          194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL  272 (636)
T ss_dssp             EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred             CCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence            4446 889999999999999999999996                 888876    899999999999999999999999


Q ss_pred             CCCcEEEcccCc-CCC-ccchhhhCC------CCCcEEEccCCcCCCcCcc--cccCCCCCCEEeccCCcccccccccCC
Q 040888          139 SELKYLNLGSNQ-LNG-QLSDMFQKN------EKLETLDLSKNQLTGELPR--SFASLSSLKKLYLQNNQFTGSINVLGK  208 (495)
Q Consensus       139 ~~L~~L~L~~N~-l~g-~~p~~~~~l------~~L~~L~ls~N~l~g~~p~--~~~~l~~L~~L~l~~N~l~g~~~~~~~  208 (495)
                      ++|++|+|++|+ ++| .+|..++.+      ++|++|+|++|+++ .+|.  .++++++|+.|+|++|+++|.++.+..
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~  351 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS  351 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEE
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCC
Confidence            999999999998 999 999998887      99999999999999 8998  999999999999999999988876666


Q ss_pred             cc-CcEEEeecCCCcccCchhhhhccc
Q 040888          209 LP-LDELNVENNKFSGWVPEELKDIAK  234 (495)
Q Consensus       209 ~~-L~~l~l~~N~l~g~~p~~l~~l~~  234 (495)
                      ++ |+.|++++|.++ .+|..+..+..
T Consensus       352 l~~L~~L~L~~N~l~-~lp~~l~~l~~  377 (636)
T 4eco_A          352 EIKLASLNLAYNQIT-EIPANFCGFTE  377 (636)
T ss_dssp             EEEESEEECCSSEEE-ECCTTSEEECT
T ss_pred             CCCCCEEECCCCccc-cccHhhhhhcc
Confidence            66 999999999999 88887776553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=1.1e-18  Score=163.26  Aligned_cols=134  Identities=23%  Similarity=0.227  Sum_probs=114.8

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNL  146 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  146 (495)
                      .+++.|+|++|.+++..|..|.++++|++|+|++|.|.+..+..+.  ++|++|+|++|+|++..+..|..+++|++|+|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            5789999999999998888899999999999999999754444343  88999999999999777777889999999999


Q ss_pred             ccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc
Q 040888          147 GSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI  203 (495)
Q Consensus       147 ~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~  203 (495)
                      ++|+|+ .+|..+..+++|+.|+|++|+|++..+..|..+++|+.|+|++|.+++..
T Consensus       120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            999998 77888889999999999999999777777888999999999999988654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.79  E-value=2.9e-19  Score=191.25  Aligned_cols=159  Identities=23%  Similarity=0.214  Sum_probs=136.2

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNL  146 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  146 (495)
                      .+++.|+|++|.+++..+..|.++++|++|||++|.+++..|..+.  ++|++|+|++|.+++..|..|+++++|++|+|
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            4689999999999999998999999999999999999987787775  89999999999999988999999999999999


Q ss_pred             ccCcCCCccchhhhCCCCCcEEEccCCcCCC-cCcccccCCCCCCEEeccCCcccccc-cccCCcc-----CcEEEeecC
Q 040888          147 GSNQLNGQLSDMFQKNEKLETLDLSKNQLTG-ELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-----LDELNVENN  219 (495)
Q Consensus       147 ~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-----L~~l~l~~N  219 (495)
                      ++|++++..+..++++++|++|+|++|.+++ .+|..++++++|++|+|++|++++.. ..+..+.     +..+++++|
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n  191 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN  191 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence            9999998888889999999999999999986 67999999999999999999998765 3333322     235666666


Q ss_pred             CCcccCch
Q 040888          220 KFSGWVPE  227 (495)
Q Consensus       220 ~l~g~~p~  227 (495)
                      .+++..+.
T Consensus       192 ~l~~~~~~  199 (606)
T 3vq2_A          192 PIDFIQDQ  199 (606)
T ss_dssp             CCCEECTT
T ss_pred             CcceeCcc
Confidence            65544433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.79  E-value=2.6e-19  Score=189.33  Aligned_cols=162  Identities=22%  Similarity=0.303  Sum_probs=142.0

Q ss_pred             CcccEEecC-------------CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcC
Q 040888           60 HWKGITCSG-------------SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSE  124 (495)
Q Consensus        60 ~w~gv~c~~-------------~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~  124 (495)
                      .|.|+ |+.             .+++.|+|++|.+++..|..|.++++|++|+|++|++++..|..+.  ++|++|+|++
T Consensus         5 ~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~   83 (549)
T 2z81_A            5 DASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD   83 (549)
T ss_dssp             CTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence            78888 864             2699999999999999999999999999999999999987777776  8999999999


Q ss_pred             CcCCCCcchhccCCCCCcEEEcccCcCCC-ccchhhhCCCCCcEEEccCCcCCCcCc-ccccCCCCCCEEeccCCccccc
Q 040888          125 NQFSGTVPYSISQMSELKYLNLGSNQLNG-QLSDMFQKNEKLETLDLSKNQLTGELP-RSFASLSSLKKLYLQNNQFTGS  202 (495)
Q Consensus       125 N~l~g~~p~~~~~l~~L~~L~L~~N~l~g-~~p~~~~~l~~L~~L~ls~N~l~g~~p-~~~~~l~~L~~L~l~~N~l~g~  202 (495)
                      |++++..|..++++++|++|+|++|++++ .+|..+.++++|++|++++|.+.+.+| ..+.++++|++|++++|.+++.
T Consensus        84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  163 (549)
T 2z81_A           84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY  163 (549)
T ss_dssp             SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence            99998888889999999999999999987 467889999999999999999655665 6899999999999999999986


Q ss_pred             c-cccCCcc-CcEEEeecCCCc
Q 040888          203 I-NVLGKLP-LDELNVENNKFS  222 (495)
Q Consensus       203 ~-~~~~~~~-L~~l~l~~N~l~  222 (495)
                      + ..+..++ |+.|+++.|.+.
T Consensus       164 ~~~~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          164 QSQSLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             CTTTTTTCSEEEEEEEECSBST
T ss_pred             ChhhhhccccCceEecccCccc
Confidence            6 5666666 777888777764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.79  E-value=7e-19  Score=188.29  Aligned_cols=164  Identities=22%  Similarity=0.283  Sum_probs=85.9

Q ss_pred             CEeEEEcCCCCCcccc--ccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchh-ccCCCCCcEE
Q 040888           70 SVTEIKLSGLGLNGQL--GYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYS-ISQMSELKYL  144 (495)
Q Consensus        70 ~v~~l~L~~n~l~g~~--~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L  144 (495)
                      +++.|+|++|.+++..  +..+.++++|++|+|++|.+.+..|..+.  ++|++|+|++|.+++..|.. +..+++|++|
T Consensus       351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  430 (606)
T 3t6q_A          351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL  430 (606)
T ss_dssp             TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred             cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence            4555555555555544  44555555555555555555544444443  45555555555555444332 4555555555


Q ss_pred             EcccCcCCCccchhhhCCCCCcEEEccCCcCCCc---CcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecC
Q 040888          145 NLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGE---LPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENN  219 (495)
Q Consensus       145 ~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~---~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N  219 (495)
                      +|++|.+++..|..+..+++|+.|++++|++++.   .+..+..+++|+.|+|++|++++.+ ..+..++ |+.|++++|
T Consensus       431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN  510 (606)
T ss_dssp             ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence            5555555555555555555555555555555541   2234555555555555555555443 3344444 555555555


Q ss_pred             CCcccCchhhhhcc
Q 040888          220 KFSGWVPEELKDIA  233 (495)
Q Consensus       220 ~l~g~~p~~l~~l~  233 (495)
                      ++++..|..+..+.
T Consensus       511 ~l~~~~~~~l~~l~  524 (606)
T 3t6q_A          511 RLTSSSIEALSHLK  524 (606)
T ss_dssp             CCCGGGGGGGTTCC
T ss_pred             ccCcCChhHhCccc
Confidence            55555555554443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.79  E-value=2.5e-19  Score=175.81  Aligned_cols=170  Identities=21%  Similarity=0.264  Sum_probs=140.5

Q ss_pred             CCCEeEEEcCCCCCccccccccCCC-----CCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCC--cchhc--c
Q 040888           68 GSSVTEIKLSGLGLNGQLGYQLTNL-----KSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGT--VPYSI--S  136 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~g~~~~~~~~l-----~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~--~p~~~--~  136 (495)
                      ..+++.|+|++|.+++. |..++.+     ++|++|+|++|++.+..|..+.  ++|++|+|++|++.|.  +|..+  .
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  198 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL  198 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred             CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence            46899999999999998 8778777     9999999999999988777776  8999999999999876  34555  8


Q ss_pred             CCCCCcEEEcccCcCCC--ccc-hhhhCCCCCcEEEccCCcCCCcCc-ccccCCCCCCEEeccCCcccccccccCCccCc
Q 040888          137 QMSELKYLNLGSNQLNG--QLS-DMFQKNEKLETLDLSKNQLTGELP-RSFASLSSLKKLYLQNNQFTGSINVLGKLPLD  212 (495)
Q Consensus       137 ~l~~L~~L~L~~N~l~g--~~p-~~~~~l~~L~~L~ls~N~l~g~~p-~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~L~  212 (495)
                      .+++|++|+|++|+|++  .++ ..+..+++|+.|+|++|++++.+| ..+..+++|++|+|++|+++..+..+. ..|+
T Consensus       199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~  277 (312)
T 1wwl_A          199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLS  277 (312)
T ss_dssp             SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEE
T ss_pred             cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-CCce
Confidence            99999999999999994  233 455788999999999999998876 566778999999999999995445444 3499


Q ss_pred             EEEeecCCCcccCchhhhhcc-----cCCCCcCC
Q 040888          213 ELNVENNKFSGWVPEELKDIA-----KTGGNSWS  241 (495)
Q Consensus       213 ~l~l~~N~l~g~~p~~l~~l~-----~~~~n~~~  241 (495)
                      .|++++|++++. |. +..++     .+.+|.+.
T Consensus       278 ~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          278 VLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             EEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             EEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence            999999999987 65 65554     44555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.78  E-value=3.9e-19  Score=190.25  Aligned_cols=164  Identities=21%  Similarity=0.265  Sum_probs=120.0

Q ss_pred             CCEeEEEcCCCCCccc--cccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcc-hhccCCCCCcE
Q 040888           69 SSVTEIKLSGLGLNGQ--LGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVP-YSISQMSELKY  143 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~--~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~  143 (495)
                      .+++.|+|++|.+++.  +|..+..+++|++|+|++|.+.+ +|..+.  ++|+.|+|++|++++..| ..+..+++|++
T Consensus       350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  428 (606)
T 3vq2_A          350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY  428 (606)
T ss_dssp             TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred             CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence            5678888888888766  36777777788888888777764 444443  677777777777777666 56777777777


Q ss_pred             EEcccCcCCCccchhhhCCCCCcEEEccCCcCCC-cCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCC
Q 040888          144 LNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTG-ELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNK  220 (495)
Q Consensus       144 L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~  220 (495)
                      |++++|.+++.+|..+..+++|++|++++|.+++ .+|..+..+++|+.|+|++|++++.+ ..+..++ |+.|++++|.
T Consensus       429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  508 (606)
T 3vq2_A          429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN  508 (606)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence            7777777777777777777777777777777776 36777777777777777777777765 4456665 7777777777


Q ss_pred             CcccCchhhhhcc
Q 040888          221 FSGWVPEELKDIA  233 (495)
Q Consensus       221 l~g~~p~~l~~l~  233 (495)
                      +++.+|..+..++
T Consensus       509 l~~~~~~~~~~l~  521 (606)
T 3vq2_A          509 LLFLDSSHYNQLY  521 (606)
T ss_dssp             CSCEEGGGTTTCT
T ss_pred             CCCcCHHHccCCC
Confidence            7777777766654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.78  E-value=5.5e-19  Score=189.59  Aligned_cols=159  Identities=21%  Similarity=0.220  Sum_probs=133.7

Q ss_pred             CEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcc
Q 040888           70 SVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLG  147 (495)
Q Consensus        70 ~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~  147 (495)
                      .++.|+|++|.|++..+..|.++++|++|||++|+|++..|..+.  ++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            689999999999988888999999999999999999976666665  899999999999998777889999999999999


Q ss_pred             cCcCCCccchhhhCCCCCcEEEccCCcCCC-cCcccccCCCCCCEEeccCCcccccc-cccCC---cc--CcEEEeecCC
Q 040888          148 SNQLNGQLSDMFQKNEKLETLDLSKNQLTG-ELPRSFASLSSLKKLYLQNNQFTGSI-NVLGK---LP--LDELNVENNK  220 (495)
Q Consensus       148 ~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~---~~--L~~l~l~~N~  220 (495)
                      +|+|++..+..|+++++|++|+|++|.+++ .+|..++.+++|++|+|++|++++.. ..+..   +.  ...++++.|.
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~  212 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  212 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred             CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence            999998878889999999999999999976 46888899999999999999998765 33322   22  4567777777


Q ss_pred             CcccCchh
Q 040888          221 FSGWVPEE  228 (495)
Q Consensus       221 l~g~~p~~  228 (495)
                      ++...|..
T Consensus       213 l~~i~~~~  220 (635)
T 4g8a_A          213 MNFIQPGA  220 (635)
T ss_dssp             CCEECTTT
T ss_pred             ccccCccc
Confidence            76544443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.78  E-value=1.1e-18  Score=180.17  Aligned_cols=171  Identities=20%  Similarity=0.235  Sum_probs=139.5

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNL  146 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  146 (495)
                      .+++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..+.  ++|++|+|++|+++...+..|.++++|+.|+|
T Consensus        99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  178 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL  178 (452)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeC
Confidence            6799999999999999999999999999999999999965555454  89999999999999777778889999999999


Q ss_pred             ccCcCCCccc-hhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcc
Q 040888          147 GSNQLNGQLS-DMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSG  223 (495)
Q Consensus       147 ~~N~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g  223 (495)
                      ++|+..+.++ ..|..+++|++|+|++|++++. | .+..+++|+.|+|++|++++.. ..+..++ |+.|++++|.+++
T Consensus       179 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~  256 (452)
T 3zyi_A          179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL  256 (452)
T ss_dssp             CCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE
T ss_pred             CCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce
Confidence            9855444444 4688888999999999998853 4 4788888999999999888876 5667776 8888998888888


Q ss_pred             cCchhhhhcc-----cCCCCcCC
Q 040888          224 WVPEELKDIA-----KTGGNSWS  241 (495)
Q Consensus       224 ~~p~~l~~l~-----~~~~n~~~  241 (495)
                      ..|..|..++     .+.+|.+.
T Consensus       257 ~~~~~~~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          257 IERNAFDGLASLVELNLAHNNLS  279 (452)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECHHHhcCCCCCCEEECCCCcCC
Confidence            8887776655     34455543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.78  E-value=3.4e-18  Score=165.85  Aligned_cols=154  Identities=25%  Similarity=0.247  Sum_probs=136.3

Q ss_pred             CCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEE
Q 040888           68 GSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLN  145 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  145 (495)
                      ..+++.|+|++|.+++..+.  +.+++|++|+|++|.+. .+|..+.  ++|++|+|++|+|++..|..|..+++|++|+
T Consensus        54 l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~  130 (290)
T 1p9a_G           54 YTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY  130 (290)
T ss_dssp             CTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence            36899999999999976543  89999999999999998 6776655  8999999999999988888999999999999


Q ss_pred             cccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCccc
Q 040888          146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGW  224 (495)
Q Consensus       146 L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~  224 (495)
                      |++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+++..+..+.... |+.+++++|++...
T Consensus       131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence            99999998888889999999999999999997766678899999999999999997665554444 99999999998753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=3.2e-19  Score=185.85  Aligned_cols=163  Identities=22%  Similarity=0.230  Sum_probs=123.3

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      .+++.|+|++|.+++..|  ++.+++|++|||++|.+++..+.   ++|++|+|++|.|++..+.   .+++|+.|+|++
T Consensus        58 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~---~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~  129 (487)
T 3oja_A           58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG---PSIETLHAANNNISRVSCS---RGQGKKNIYLAN  129 (487)
T ss_dssp             TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC---TTCCEEECCSSCCCCEEEC---CCSSCEEEECCS
T ss_pred             CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC---CCcCEEECcCCcCCCCCcc---ccCCCCEEECCC
Confidence            456666666666666554  66666666666666666543221   6777777777777765553   467899999999


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCccccc-CCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcccCc
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFA-SLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVP  226 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~-~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~~p  226 (495)
                      |.|++..|..+..+++|+.|+|++|.+++.+|..+. .+++|+.|+|++|.|++..... .++ |+.|+|++|.+++..|
T Consensus       130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~~~~  208 (487)
T 3oja_A          130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGP  208 (487)
T ss_dssp             SCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEECG
T ss_pred             CCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc-cCCCCCEEECCCCCCCCCCH
Confidence            999999999999999999999999999998888886 7999999999999999875433 344 9999999999998655


Q ss_pred             hhhhhcc-----cCCCCcCC
Q 040888          227 EELKDIA-----KTGGNSWS  241 (495)
Q Consensus       227 ~~l~~l~-----~~~~n~~~  241 (495)
                      . +..++     .+.+|.+.
T Consensus       209 ~-~~~l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          209 E-FQSAAGVTWISLRNNKLV  227 (487)
T ss_dssp             G-GGGGTTCSEEECTTSCCC
T ss_pred             h-HcCCCCccEEEecCCcCc
Confidence            4 66554     44555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.78  E-value=2.3e-19  Score=197.61  Aligned_cols=147  Identities=19%  Similarity=0.326  Sum_probs=134.5

Q ss_pred             cccccCCCCCCcEEECcCCCCCC-----------------CCCCCCC----CCCcEEECcCCcCCCCcchhccCCCCCcE
Q 040888           85 LGYQLTNLKSVSYLDVSNNNLKD-----------------SIPYQLP----PNLKHLDLSENQFSGTVPYSISQMSELKY  143 (495)
Q Consensus        85 ~~~~~~~l~~L~~L~Ls~N~l~g-----------------~~p~~~~----~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~  143 (495)
                      +|..|+++++|+.|+|++|.|+|                 .+|..+.    ++|++|+|++|++.|.+|..++++++|+.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            88899999999999999999999                 3888874    89999999999999999999999999999


Q ss_pred             EEcccCc-CCC-ccchhhhCCC-------CCcEEEccCCcCCCcCcc--cccCCCCCCEEeccCCcccccccccCCcc-C
Q 040888          144 LNLGSNQ-LNG-QLSDMFQKNE-------KLETLDLSKNQLTGELPR--SFASLSSLKKLYLQNNQFTGSINVLGKLP-L  211 (495)
Q Consensus       144 L~L~~N~-l~g-~~p~~~~~l~-------~L~~L~ls~N~l~g~~p~--~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L  211 (495)
                      |+|++|+ |+| .+|..++.++       +|+.|+|++|+++ .+|.  .++++++|+.|+|++|+++ .++.++.++ |
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L  597 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKL  597 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEE
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcc
Confidence            9999998 999 8998887766       9999999999999 8998  9999999999999999999 556777777 9


Q ss_pred             cEEEeecCCCcccCchhhhhccc
Q 040888          212 DELNVENNKFSGWVPEELKDIAK  234 (495)
Q Consensus       212 ~~l~l~~N~l~g~~p~~l~~l~~  234 (495)
                      +.|++++|.++ .+|..+..+..
T Consensus       598 ~~L~Ls~N~l~-~lp~~l~~l~~  619 (876)
T 4ecn_A          598 TDLKLDYNQIE-EIPEDFCAFTD  619 (876)
T ss_dssp             SEEECCSSCCS-CCCTTSCEECT
T ss_pred             eEEECcCCccc-cchHHHhhccc
Confidence            99999999999 88987776553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.78  E-value=1.1e-18  Score=176.59  Aligned_cols=132  Identities=20%  Similarity=0.292  Sum_probs=91.8

Q ss_pred             CEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcc
Q 040888           70 SVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLG  147 (495)
Q Consensus        70 ~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~  147 (495)
                      .++.|+++++.++...+..+.++++|++|+|++|.+.+..|..+.  ++|++|+|++|.+++..|..+.++++|++|+|+
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  125 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  125 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence            466677777776655444566777777777777777655554444  677777777777777666667777777777777


Q ss_pred             cCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccc
Q 040888          148 SNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG  201 (495)
Q Consensus       148 ~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g  201 (495)
                      +|+++...+..|..+++|++|++++|.+++..|..+..+++|+.|++++|++++
T Consensus       126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            777775444556677777777777777776666667777777777777777664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.78  E-value=5.3e-18  Score=167.53  Aligned_cols=162  Identities=22%  Similarity=0.310  Sum_probs=144.4

Q ss_pred             CCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcc
Q 040888           68 GSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLG  147 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~  147 (495)
                      ..+++.|+|++|.+++..|..|.++++|++|+|++|.++ .+|..+.++|++|+|++|.+++..+..+.++++|+.|+|+
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  153 (330)
T 1xku_A           75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG  153 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred             CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECC
Confidence            368999999999999999999999999999999999998 6888888999999999999998888889999999999999


Q ss_pred             cCcCCC--ccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcc
Q 040888          148 SNQLNG--QLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSG  223 (495)
Q Consensus       148 ~N~l~g--~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g  223 (495)
                      +|.++.  ..+..+..+++|+.|++++|.++ .+|..+.  ++|+.|++++|++++.. ..+..++ |+.|++++|.+++
T Consensus       154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  230 (330)
T 1xku_A          154 TNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA  230 (330)
T ss_dssp             SSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred             CCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence            999964  77888999999999999999998 4666554  78999999999999876 5677776 9999999999998


Q ss_pred             cCchhhhhcc
Q 040888          224 WVPEELKDIA  233 (495)
Q Consensus       224 ~~p~~l~~l~  233 (495)
                      ..|..+..++
T Consensus       231 ~~~~~~~~l~  240 (330)
T 1xku_A          231 VDNGSLANTP  240 (330)
T ss_dssp             ECTTTGGGST
T ss_pred             eChhhccCCC
Confidence            8887777665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.78  E-value=9.4e-19  Score=187.30  Aligned_cols=171  Identities=19%  Similarity=0.160  Sum_probs=150.8

Q ss_pred             cccEEecC-----------CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcC
Q 040888           61 WKGITCSG-----------SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQF  127 (495)
Q Consensus        61 w~gv~c~~-----------~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l  127 (495)
                      +..+.|..           ..++.|+|++|.+++..|..|+++++|++|+|++|.+.+..|..+.  ++|++|+|++|++
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   93 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL   93 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence            55677853           3689999999999999999999999999999999999988887776  8999999999999


Q ss_pred             CCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-ccc
Q 040888          128 SGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVL  206 (495)
Q Consensus       128 ~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~  206 (495)
                      ++..|..|+++++|++|+|++|++++..|..+.++++|++|+|++|.+++..++.+..+++|+.|++++|.+++.. ..+
T Consensus        94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  173 (606)
T 3t6q_A           94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM  173 (606)
T ss_dssp             SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH
T ss_pred             cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhh
Confidence            9999999999999999999999999887888999999999999999999854445556999999999999999876 556


Q ss_pred             CCcc-Cc--EEEeecCCCcccCchhhhh
Q 040888          207 GKLP-LD--ELNVENNKFSGWVPEELKD  231 (495)
Q Consensus       207 ~~~~-L~--~l~l~~N~l~g~~p~~l~~  231 (495)
                      ..++ |+  .|++++|.+++..|..+..
T Consensus       174 ~~l~~L~~l~L~l~~n~l~~~~~~~~~~  201 (606)
T 3t6q_A          174 SSLQQATNLSLNLNGNDIAGIEPGAFDS  201 (606)
T ss_dssp             HTTTTCCSEEEECTTCCCCEECTTTTTT
T ss_pred             hhhcccceeEEecCCCccCccChhHhhh
Confidence            6665 77  8999999999988876643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=1.9e-18  Score=172.98  Aligned_cols=156  Identities=26%  Similarity=0.241  Sum_probs=135.7

Q ss_pred             CCEeEEEcCCCCCccccccccC-CCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEE
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLT-NLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLN  145 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~-~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  145 (495)
                      ..++.|+|++|+|++..+..+. ++++|+.|+|++|+|++..|..+.  ++|++|+|++|+|++..+..|.++++|++|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            4588999999999998888888 999999999999999977666665  8999999999999987788899999999999


Q ss_pred             cccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccc---cCCCCCCEEeccCCcccccc-cccCCcc---CcEEEeec
Q 040888          146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSF---ASLSSLKKLYLQNNQFTGSI-NVLGKLP---LDELNVEN  218 (495)
Q Consensus       146 L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~---~~l~~L~~L~l~~N~l~g~~-~~~~~~~---L~~l~l~~  218 (495)
                      |++|+|++..|..|..+++|+.|+|++|+|++..+..|   ..+++|+.|+|++|+|++.. ..+..++   ++.|++++
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence            99999999999999999999999999999996544445   67999999999999999766 4455554   58899999


Q ss_pred             CCCccc
Q 040888          219 NKFSGW  224 (495)
Q Consensus       219 N~l~g~  224 (495)
                      |++...
T Consensus       199 N~~~C~  204 (361)
T 2xot_A          199 NPLECD  204 (361)
T ss_dssp             SCEECC
T ss_pred             CCccCC
Confidence            999854

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=4.2e-18  Score=182.03  Aligned_cols=108  Identities=25%  Similarity=0.307  Sum_probs=69.4

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNL  146 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  146 (495)
                      .+++.|+|++|.+++..|..|+++++|++|+|++|.+++..|..+.  ++|++|+|++|.|++..+..|+++++|++|+|
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            3577777777777777666777777777777777777765554443  56666666666666444444566666666666


Q ss_pred             ccCcCCCccchhhhCCCCCcEEEccCCcCC
Q 040888          147 GSNQLNGQLSDMFQKNEKLETLDLSKNQLT  176 (495)
Q Consensus       147 ~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~  176 (495)
                      ++|.|++..|..|..+++|+.|+|++|.++
T Consensus       155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          155 SNNNLERIEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             eCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence            666666655555555555555555555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=1.1e-18  Score=159.19  Aligned_cols=151  Identities=19%  Similarity=0.285  Sum_probs=128.1

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      .+++.|+|++|.++ .+| .+..+++|++|+|++|.+...-+..-.++|++|+|++|++++..|..++.+++|++|+|++
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~  121 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH  121 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred             CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence            57999999999998 555 6999999999999999776432222238999999999999998899999999999999999


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcc
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSG  223 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g  223 (495)
                      |++++..|..+..+++|++|++++|.+.+.+| .+..+++|+.|++++|++++.. .+..++ |+.|++++|++.+
T Consensus       122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred             CccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence            99999899999999999999999999434666 6899999999999999998754 555666 9999999999864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=7.9e-18  Score=154.89  Aligned_cols=152  Identities=27%  Similarity=0.360  Sum_probs=132.0

Q ss_pred             eEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccC
Q 040888           72 TEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSN  149 (495)
Q Consensus        72 ~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N  149 (495)
                      +.++.++++++.. |..+  .++|++|+|++|++++..+..+.  ++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus        10 ~~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            5788889888754 4333  46899999999999966555454  89999999999999777777899999999999999


Q ss_pred             cCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcccCc
Q 040888          150 QLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVP  226 (495)
Q Consensus       150 ~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~~p  226 (495)
                      +|++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++.+ ..+..++ |+.|++++|.+.+..|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence            999888888999999999999999999887778899999999999999999877 4467676 9999999999998876

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.77  E-value=3e-18  Score=155.76  Aligned_cols=130  Identities=26%  Similarity=0.399  Sum_probs=120.6

Q ss_pred             cEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcch-hccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCc
Q 040888           96 SYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPY-SISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQ  174 (495)
Q Consensus        96 ~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~  174 (495)
                      +.|++++|.++ .+|..++.+|++|+|++|+|++..+. .+..+++|++|+|++|+|++..|..|..+++|++|+|++|+
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCCCCcC-cCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            78999999995 78988889999999999999977665 48999999999999999999999999999999999999999


Q ss_pred             CCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcccCc
Q 040888          175 LTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVP  226 (495)
Q Consensus       175 l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~~p  226 (495)
                      |++..|..|..+++|++|+|++|++++.+ ..+..++ |+.|++++|.+++..+
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99999988999999999999999999987 6677777 9999999999998776

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.76  E-value=1.4e-18  Score=183.08  Aligned_cols=167  Identities=26%  Similarity=0.415  Sum_probs=99.1

Q ss_pred             CCCCCCCCCCCCC---CcccE-EecCCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEEC
Q 040888           47 SNWKAGGGDPCGE---HWKGI-TCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDL  122 (495)
Q Consensus        47 ~~w~~~~~~~C~~---~w~gv-~c~~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~L  122 (495)
                      .+|.. +.++|..   .|.|+ .|...+++.|+|++|+|++ +|..+.  ++|++|+|++|+|+ .+| .+.++|++|+|
T Consensus        34 ~~W~~-~~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip-~~l~~L~~L~L  107 (571)
T 3cvr_A           34 DKWEK-QALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP-ELPASLEYLDA  107 (571)
T ss_dssp             HHHHT-TCCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC-CCCTTCCEEEC
T ss_pred             HHHhc-cCCccccccchhhhccccccCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc-cccCCCCEEEc
Confidence            35654 4567753   58999 7887789999999999887 666553  66777777777776 566 45566777777


Q ss_pred             cCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCC-------------------cCcccc
Q 040888          123 SENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTG-------------------ELPRSF  183 (495)
Q Consensus       123 s~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g-------------------~~p~~~  183 (495)
                      ++|+|++ +|. +..  +|++|+|++|+|++ +|.   .+++|+.|+|++|.|++                   .+|. |
T Consensus       108 s~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l  178 (571)
T 3cvr_A          108 CDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPE-L  178 (571)
T ss_dssp             CSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-C
T ss_pred             cCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCCcch-h
Confidence            7776665 555 443  55566666655554 343   34445555555555443                   1333 3


Q ss_pred             cCCCCCCEEeccCCcccccccccCCccC-------cEEEeecCCCcccCchhhhhcc
Q 040888          184 ASLSSLKKLYLQNNQFTGSINVLGKLPL-------DELNVENNKFSGWVPEELKDIA  233 (495)
Q Consensus       184 ~~l~~L~~L~l~~N~l~g~~~~~~~~~L-------~~l~l~~N~l~g~~p~~l~~l~  233 (495)
                      .  ++|+.|+|++|+|+..+. +.. .|       +.|+|++|.|+ .+|..+..++
T Consensus       179 ~--~~L~~L~Ls~N~L~~lp~-~~~-~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~  230 (571)
T 3cvr_A          179 P--ESLEALDVSTNLLESLPA-VPV-RNHHSEETEIFFRCRENRIT-HIPENILSLD  230 (571)
T ss_dssp             C--TTCCEEECCSSCCSSCCC-CC---------CCEEEECCSSCCC-CCCGGGGGSC
T ss_pred             h--CCCCEEECcCCCCCchhh-HHH-hhhcccccceEEecCCCcce-ecCHHHhcCC
Confidence            3  455555555555553223 222 34       66666666666 3566555444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.76  E-value=5e-20  Score=200.66  Aligned_cols=200  Identities=21%  Similarity=0.194  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHHHcCCCC--CCCCCCCCCCCCCCCCCcccEEecCCCEeEEEcCCCCCccc--------------------
Q 040888           27 SQDASALNVMYTSLHSP--SQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSGLGLNGQ--------------------   84 (495)
Q Consensus        27 ~~~~~~L~~~~~~~~~~--~~l~~w~~~~~~~C~~~w~gv~c~~~~v~~l~L~~n~l~g~--------------------   84 (495)
                      ..+..+|+.++.+....  ..-..|.......+  .|.+..++.++++.|+|.+|++...                    
T Consensus       131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~  208 (727)
T 4b8c_D          131 DCTKQALMEMADTLTDSKTAKKQQPTGDSTPSG--TATNSAVSTPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDD  208 (727)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred             ccchhhhhhhhhhcccccCcccCCCcCCCCccc--cCCCceecCCccceEEeeCCCCCcchhhHhhcCccCcccccCccc
Confidence            45567788887664221  11235643323333  6888888777777777666555432                    


Q ss_pred             -------cccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCcc
Q 040888           85 -------LGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQL  155 (495)
Q Consensus        85 -------~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~  155 (495)
                             .+..+..++.|+.|+|++|.+. .+|..+.  ++|++|+|++|.|+ .+|..|++|++|++|+|++|.|+ .+
T Consensus       209 ~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~l  285 (727)
T 4b8c_D          209 IENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SL  285 (727)
T ss_dssp             -------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SC
T ss_pred             cccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-cc
Confidence                   2344555666666666666665 4444433  56666666666666 55666666666666666666666 55


Q ss_pred             chhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc--CcEEEeecCCCcccCchhhhhc
Q 040888          156 SDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP--LDELNVENNKFSGWVPEELKDI  232 (495)
Q Consensus       156 p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~--L~~l~l~~N~l~g~~p~~l~~l  232 (495)
                      |..|+.+++|++|+|++|.|+ .+|..|+++++|+.|+|++|.|++.+ ..+..+.  +..++|++|.++|.+|..+..+
T Consensus       286 p~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l  364 (727)
T 4b8c_D          286 PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFI  364 (727)
T ss_dssp             CSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----
T ss_pred             ChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccccee
Confidence            666666666666666666665 55555666666666666666666555 2222222  2234556666666666555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.76  E-value=1.1e-18  Score=193.78  Aligned_cols=169  Identities=22%  Similarity=0.214  Sum_probs=137.8

Q ss_pred             CcccEEecCCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCC-CCCCC--CCCcEEECcCCcCCCCcchhcc
Q 040888           60 HWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSI-PYQLP--PNLKHLDLSENQFSGTVPYSIS  136 (495)
Q Consensus        60 ~w~gv~c~~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~-p~~~~--~~L~~L~Ls~N~l~g~~p~~~~  136 (495)
                      .|+.|.+-..+++.|+|++|.+++..|..|.++++|++|||++|.+.+.+ |..+.  ++|++|+|++|.+++..|..|.
T Consensus        15 ~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~   94 (844)
T 3j0a_A           15 NLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ   94 (844)
T ss_dssp             CSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred             CCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence            56666664468999999999999999999999999999999999887777 44554  8999999999999988899999


Q ss_pred             CCCCCcEEEcccCcCCCccchh--hhCCCCCcEEEccCCcCCCcCc-ccccCCCCCCEEeccCCcccccc-cccCCc---
Q 040888          137 QMSELKYLNLGSNQLNGQLSDM--FQKNEKLETLDLSKNQLTGELP-RSFASLSSLKKLYLQNNQFTGSI-NVLGKL---  209 (495)
Q Consensus       137 ~l~~L~~L~L~~N~l~g~~p~~--~~~l~~L~~L~ls~N~l~g~~p-~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~---  209 (495)
                      ++++|++|+|++|.+++.+|..  +.++++|++|+|++|.+++..| ..|+++++|++|+|++|.+++.. ..+..+   
T Consensus        95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~  174 (844)
T 3j0a_A           95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK  174 (844)
T ss_dssp             SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred             CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence            9999999999999999877765  8899999999999999988755 57899999999999999988755 333332   


Q ss_pred             cCcEEEeecCCCcccCchh
Q 040888          210 PLDELNVENNKFSGWVPEE  228 (495)
Q Consensus       210 ~L~~l~l~~N~l~g~~p~~  228 (495)
                      .|+.|++++|.+++.+|..
T Consensus       175 ~L~~L~L~~n~l~~~~~~~  193 (844)
T 3j0a_A          175 TLSFFSLAANSLYSRVSVD  193 (844)
T ss_dssp             SSCCCEECCSBSCCCCCCC
T ss_pred             ccceEECCCCccccccccc
Confidence            2566666666666555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.75  E-value=4.7e-18  Score=180.35  Aligned_cols=162  Identities=25%  Similarity=0.362  Sum_probs=116.0

Q ss_pred             CEeEEEcCCCCCcccccccc-----CCCCC--------------------------CcEEECcCCCCCCCCCCCCCCCCc
Q 040888           70 SVTEIKLSGLGLNGQLGYQL-----TNLKS--------------------------VSYLDVSNNNLKDSIPYQLPPNLK  118 (495)
Q Consensus        70 ~v~~l~L~~n~l~g~~~~~~-----~~l~~--------------------------L~~L~Ls~N~l~g~~p~~~~~~L~  118 (495)
                      +++.|++++|.++|.+|..+     .+++.                          |+.|++++|.+.........++|+
T Consensus       277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~  356 (562)
T 3a79_B          277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT  356 (562)
T ss_dssp             SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCC
T ss_pred             cccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCce
Confidence            78999999999999888776     44433                          555555555554222112337888


Q ss_pred             EEECcCCcCCCCcchhccCCCCCcEEEcccCcCCC--ccchhhhCCCCCcEEEccCCcCCCcCcc-cccCCCCCCEEecc
Q 040888          119 HLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNG--QLSDMFQKNEKLETLDLSKNQLTGELPR-SFASLSSLKKLYLQ  195 (495)
Q Consensus       119 ~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g--~~p~~~~~l~~L~~L~ls~N~l~g~~p~-~~~~l~~L~~L~l~  195 (495)
                      +|+|++|++++.+|..+.++++|++|+|++|++++  .+|..+..+++|+.|++++|++++.+|. .+..+++|+.|+|+
T Consensus       357 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~  436 (562)
T 3a79_B          357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS  436 (562)
T ss_dssp             EEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECC
T ss_pred             EEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECC
Confidence            88888888888788888888888888888888886  4456677888888888888888875554 47778888888888


Q ss_pred             CCcccccc-cccCCccCcEEEeecCCCcccCchhhhhcc
Q 040888          196 NNQFTGSI-NVLGKLPLDELNVENNKFSGWVPEELKDIA  233 (495)
Q Consensus       196 ~N~l~g~~-~~~~~~~L~~l~l~~N~l~g~~p~~l~~l~  233 (495)
                      +|++++.+ ..+. ..|+.|++++|.++ .+|..+..++
T Consensus       437 ~n~l~~~~~~~l~-~~L~~L~L~~N~l~-~ip~~~~~l~  473 (562)
T 3a79_B          437 SNMLTGSVFRCLP-PKVKVLDLHNNRIM-SIPKDVTHLQ  473 (562)
T ss_dssp             SSCCCGGGGSSCC-TTCSEEECCSSCCC-CCCTTTTSSC
T ss_pred             CCCCCcchhhhhc-CcCCEEECCCCcCc-ccChhhcCCC
Confidence            88887655 2222 23788888888887 5676655544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.75  E-value=1.5e-17  Score=168.15  Aligned_cols=106  Identities=25%  Similarity=0.306  Sum_probs=46.1

Q ss_pred             CEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcc
Q 040888           70 SVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLG  147 (495)
Q Consensus        70 ~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~  147 (495)
                      +++.|+|++|.+++..+..|.++++|++|+|++|.+.+..|..+.  ++|++|+|++|.++...+..|.++++|++|+|+
T Consensus        70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  149 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  149 (390)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence            444455555554444444444444444444444444443333332  444444444444442222223444444444444


Q ss_pred             cCcCCCccchhhhCCCCCcEEEccCCcC
Q 040888          148 SNQLNGQLSDMFQKNEKLETLDLSKNQL  175 (495)
Q Consensus       148 ~N~l~g~~p~~~~~l~~L~~L~ls~N~l  175 (495)
                      +|.+++..|..+..+++|+.|++++|.+
T Consensus       150 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l  177 (390)
T 3o6n_A          150 NNNLERIEDDTFQATTSLQNLQLSSNRL  177 (390)
T ss_dssp             SSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred             CCccCccChhhccCCCCCCEEECCCCcC
Confidence            4444444343444444444444444433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.75  E-value=1.1e-18  Score=170.96  Aligned_cols=171  Identities=19%  Similarity=0.216  Sum_probs=130.2

Q ss_pred             CCEeEEEcCCCCCcccccccc--CCCCCCcEEECcCCCCCCCCCC------CCCCCCcEEECcCCcCCCCcchhccCCCC
Q 040888           69 SSVTEIKLSGLGLNGQLGYQL--TNLKSVSYLDVSNNNLKDSIPY------QLPPNLKHLDLSENQFSGTVPYSISQMSE  140 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~--~~l~~L~~L~Ls~N~l~g~~p~------~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~  140 (495)
                      .+++.|+|++|.+++..|..+  ..+++|++|+|++|.+++..|.      ...++|++|+|++|++++..|..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            469999999999999999888  8999999999999999876552      12379999999999999888889999999


Q ss_pred             CcEEEcccCcCCCc--cc--hhhhCCCCCcEEEccCCcCCCcCcc----cccCCCCCCEEeccCCcccccc-cccCCc--
Q 040888          141 LKYLNLGSNQLNGQ--LS--DMFQKNEKLETLDLSKNQLTGELPR----SFASLSSLKKLYLQNNQFTGSI-NVLGKL--  209 (495)
Q Consensus       141 L~~L~L~~N~l~g~--~p--~~~~~l~~L~~L~ls~N~l~g~~p~----~~~~l~~L~~L~l~~N~l~g~~-~~~~~~--  209 (495)
                      |++|+|++|++.+.  ++  ..+..+++|++|+|++|+++. +|.    .+.++++|++|+|++|++++.. ..+..+  
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            99999999998763  22  234678888888888888873 232    2467788888888888888774 444443  


Q ss_pred             -c-CcEEEeecCCCcccCchhhh-hcc--cCCCCcCC
Q 040888          210 -P-LDELNVENNKFSGWVPEELK-DIA--KTGGNSWS  241 (495)
Q Consensus       210 -~-L~~l~l~~N~l~g~~p~~l~-~l~--~~~~n~~~  241 (495)
                       + |+.|++++|.++ .+|..+. ++.  .+..|.+.
T Consensus       250 ~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          250 SSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLN  285 (310)
T ss_dssp             CTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCCC
T ss_pred             cCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcCC
Confidence             3 888888888888 5666543 222  44555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.75  E-value=1.2e-17  Score=181.34  Aligned_cols=175  Identities=19%  Similarity=0.216  Sum_probs=110.2

Q ss_pred             CCEeEEEcCCCCCccccc-cccCCCCCCcEEECcCCCCCCC--------------------------CCCCCC--CCCcE
Q 040888           69 SSVTEIKLSGLGLNGQLG-YQLTNLKSVSYLDVSNNNLKDS--------------------------IPYQLP--PNLKH  119 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~-~~~~~l~~L~~L~Ls~N~l~g~--------------------------~p~~~~--~~L~~  119 (495)
                      .+++.|+|++|.+++.+| ..+.++++|++|+|++|.+.+.                          +|..+.  ++|+.
T Consensus       405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~  484 (680)
T 1ziw_A          405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI  484 (680)
T ss_dssp             TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred             CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence            467788888888877665 5677777777777777765543                          333333  56666


Q ss_pred             EECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccc--------hhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCE
Q 040888          120 LDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLS--------DMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKK  191 (495)
Q Consensus       120 L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p--------~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~  191 (495)
                      |+|++|++++..|..+.++++|++|+|++|++++..+        ..|.++++|+.|+|++|+++...+..|.++++|+.
T Consensus       485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~  564 (680)
T 1ziw_A          485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI  564 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence            6666666666555566666666666666666654321        12566666777777777776333345677777777


Q ss_pred             EeccCCcccccc-cccCCcc-CcEEEeecCCCcccCchhhh-hcc-----cCCCCcCCCC
Q 040888          192 LYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVPEELK-DIA-----KTGGNSWSSS  243 (495)
Q Consensus       192 L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~~p~~l~-~l~-----~~~~n~~~~~  243 (495)
                      |+|++|++++.+ ..+..++ |+.|++++|.+++..|..+. .++     .+.+|+|.|.
T Consensus       565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred             eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence            777777777655 3344554 77777777777776666444 222     4456666553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.75  E-value=4.1e-18  Score=178.93  Aligned_cols=169  Identities=26%  Similarity=0.383  Sum_probs=139.7

Q ss_pred             CCEeEEEcCCCCCcccccccc-----CCCCCCcEEECcCCCCCCCCCC----------------------------CCCC
Q 040888           69 SSVTEIKLSGLGLNGQLGYQL-----TNLKSVSYLDVSNNNLKDSIPY----------------------------QLPP  115 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~-----~~l~~L~~L~Ls~N~l~g~~p~----------------------------~~~~  115 (495)
                      .+++.|+|++|.++|.+|..+     +++++|+.+++++|.+  .+|.                            .-.+
T Consensus       247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~  324 (520)
T 2z7x_B          247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS  324 (520)
T ss_dssp             SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred             CcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCC
Confidence            378899999999999999888     7787777777777766  3331                            2337


Q ss_pred             CCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCC--ccchhhhCCCCCcEEEccCCcCCCcCccc-ccCCCCCCEE
Q 040888          116 NLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNG--QLSDMFQKNEKLETLDLSKNQLTGELPRS-FASLSSLKKL  192 (495)
Q Consensus       116 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g--~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~~~l~~L~~L  192 (495)
                      +|++|+|++|++++.+|..+..+++|++|+|++|++++  .+|..+..+++|++|++++|.+++.+|.. +..+++|+.|
T Consensus       325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L  404 (520)
T 2z7x_B          325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL  404 (520)
T ss_dssp             CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred             cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE
Confidence            99999999999999999999999999999999999997  67788999999999999999999867764 8889999999


Q ss_pred             eccCCcccccc-cccCCccCcEEEeecCCCcccCchhhhhcc-----cCCCCcCC
Q 040888          193 YLQNNQFTGSI-NVLGKLPLDELNVENNKFSGWVPEELKDIA-----KTGGNSWS  241 (495)
Q Consensus       193 ~l~~N~l~g~~-~~~~~~~L~~l~l~~N~l~g~~p~~l~~l~-----~~~~n~~~  241 (495)
                      ++++|++++.+ ..+. ..|+.|++++|.++ .+|..+..++     .+.+|.+.
T Consensus       405 ~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~  457 (520)
T 2z7x_B          405 NMSSNILTDTIFRCLP-PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK  457 (520)
T ss_dssp             ECCSSCCCGGGGGSCC-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ECcCCCCCcchhhhhc-ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence            99999998876 3332 34999999999999 7888777665     34555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.75  E-value=5.8e-18  Score=175.90  Aligned_cols=152  Identities=24%  Similarity=0.246  Sum_probs=119.6

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNL  146 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  146 (495)
                      .+++.|+|++|.+++..|..|.++++|++|+|++|.+++..+..+.  ++|++|+|++|++++..|..|..+++|+.|+|
T Consensus        56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l  135 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV  135 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred             CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence            5789999999999988888999999999999999998854444443  78999999999998888888888889999999


Q ss_pred             ccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCC
Q 040888          147 GSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNK  220 (495)
Q Consensus       147 ~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~  220 (495)
                      ++|.+++..|..|..+++|+.|+|++|++++..+..+.++++|+.|+|++|.+++.. ..+..++ |+.|++++|.
T Consensus       136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~  211 (477)
T 2id5_A          136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP  211 (477)
T ss_dssp             CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred             CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence            988888888888888888888888888888766667788888888888888777654 2333333 4444444433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.75  E-value=4.7e-18  Score=188.82  Aligned_cols=83  Identities=22%  Similarity=0.263  Sum_probs=51.7

Q ss_pred             hCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCccCcEEEeecCCCcccCchhhhhcc--cCCC
Q 040888          160 QKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEELKDIA--KTGG  237 (495)
Q Consensus       160 ~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~L~~l~l~~N~l~g~~p~~l~~l~--~~~~  237 (495)
                      ..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++.++......|+.|++++|+|++.+|..+.++.  .+.+
T Consensus       477 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~  556 (844)
T 3j0a_A          477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITH  556 (844)
T ss_dssp             SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEE
T ss_pred             cCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecC
Confidence            34445555555555555555555666677777777777776655322223377777888888877777766655  4566


Q ss_pred             CcCCC
Q 040888          238 NSWSS  242 (495)
Q Consensus       238 n~~~~  242 (495)
                      |+|.|
T Consensus       557 Np~~C  561 (844)
T 3j0a_A          557 NKFIC  561 (844)
T ss_dssp             ECCCC
T ss_pred             CCccc
Confidence            77765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.74  E-value=1.6e-17  Score=148.74  Aligned_cols=135  Identities=26%  Similarity=0.368  Sum_probs=82.1

Q ss_pred             CCCCCCcccEEecCCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcc
Q 040888           55 DPCGEHWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVP  132 (495)
Q Consensus        55 ~~C~~~w~gv~c~~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p  132 (495)
                      +.|.|.|.++.|+..+          ++. +|..+  .++|+.|+|++|++++..+..+.  ++|++|+|++|++++..+
T Consensus         3 ~~C~C~~~~l~~~~~~----------l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~   69 (177)
T 2o6r_A            3 SRCSCSGTEIRCNSKG----------LTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD   69 (177)
T ss_dssp             TTCEEETTEEECCSSC----------CSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred             CCCEeCCCEEEecCCC----------Ccc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh
Confidence            4566678877776433          322 23222  24667777777777654443333  566667776666665555


Q ss_pred             hhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCccccc
Q 040888          133 YSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGS  202 (495)
Q Consensus       133 ~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~  202 (495)
                      ..+..+++|++|+|++|+|++..+..+..+++|++|+|++|++++..+..+..+++|+.|+|++|.+++.
T Consensus        70 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            5566666666666666666666555666666666666666666654444456666666666666666544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.74  E-value=1.2e-17  Score=179.10  Aligned_cols=152  Identities=23%  Similarity=0.269  Sum_probs=132.0

Q ss_pred             CCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccc
Q 040888           79 LGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLS  156 (495)
Q Consensus        79 n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p  156 (495)
                      .+|+ .+|..+.  +++++|||++|+|++..|..+.  ++|++|||++|+|++..|..|.++++|++|+|++|+|++..+
T Consensus        41 ~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~  117 (635)
T 4g8a_A           41 LNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL  117 (635)
T ss_dssp             SCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred             CCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence            3444 3555442  4799999999999976666665  899999999999998888889999999999999999998888


Q ss_pred             hhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc--cccCCcc-CcEEEeecCCCcccCchhhhhcc
Q 040888          157 DMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI--NVLGKLP-LDELNVENNKFSGWVPEELKDIA  233 (495)
Q Consensus       157 ~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~--~~~~~~~-L~~l~l~~N~l~g~~p~~l~~l~  233 (495)
                      ..|.++++|++|+|++|+|++..+..|+++++|++|+|++|.+++..  ..+..++ |+.|++++|.+++..|..+..+.
T Consensus       118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~  197 (635)
T 4g8a_A          118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH  197 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred             HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence            89999999999999999999887788999999999999999998643  5566666 99999999999999998887654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.74  E-value=9.2e-18  Score=178.07  Aligned_cols=163  Identities=21%  Similarity=0.222  Sum_probs=142.0

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNL  146 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  146 (495)
                      .+++.|+|++|.+++..+..|.++++|++|||++|++++..|..+.  ++|++|+|++|++++..|..|.++++|++|+|
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            3689999999999998888999999999999999999976666665  89999999999999888889999999999999


Q ss_pred             ccCcCCCccchhhhCCCCCcEEEccCCcCCC-cCcccccCCCCCCEEeccCCcccccc-cccCCcc-C----cEEEeecC
Q 040888          147 GSNQLNGQLSDMFQKNEKLETLDLSKNQLTG-ELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-L----DELNVENN  219 (495)
Q Consensus       147 ~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L----~~l~l~~N  219 (495)
                      ++|++++..+..++++++|++|++++|.+++ .+|..|+++++|+.|++++|++++.. ..+..+. |    ..+++++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            9999997766679999999999999999987 57999999999999999999998765 3444443 4    78999999


Q ss_pred             CCcccCchhhhh
Q 040888          220 KFSGWVPEELKD  231 (495)
Q Consensus       220 ~l~g~~p~~l~~  231 (495)
                      .+++..|..+..
T Consensus       188 ~l~~~~~~~~~~  199 (570)
T 2z63_A          188 PMNFIQPGAFKE  199 (570)
T ss_dssp             CCCEECTTTTTT
T ss_pred             CceecCHHHhcc
Confidence            998877766553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.74  E-value=2.3e-18  Score=171.87  Aligned_cols=159  Identities=19%  Similarity=0.258  Sum_probs=136.0

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcc-hhccCCCCCcEEE
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVP-YSISQMSELKYLN  145 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~  145 (495)
                      .+++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..+.  ++|++|+|++|++++..+ ..+..+++|++|+
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~  155 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR  155 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred             CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence            6899999999999998889999999999999999999964433233  899999999999995444 4789999999999


Q ss_pred             cccCc-CCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCccccccc-ccCCcc-CcEEEeecCCCc
Q 040888          146 LGSNQ-LNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSIN-VLGKLP-LDELNVENNKFS  222 (495)
Q Consensus       146 L~~N~-l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~-~~~~~~-L~~l~l~~N~l~  222 (495)
                      +++|+ +++..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|+++.... .+..++ |+.|++++|.++
T Consensus       156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  235 (353)
T 2z80_A          156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD  235 (353)
T ss_dssp             EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred             CCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence            99994 777777889999999999999999999999999999999999999999876553 333344 899999999998


Q ss_pred             ccCch
Q 040888          223 GWVPE  227 (495)
Q Consensus       223 g~~p~  227 (495)
                      +..+.
T Consensus       236 ~~~~~  240 (353)
T 2z80_A          236 TFHFS  240 (353)
T ss_dssp             TCCCC
T ss_pred             ccccc
Confidence            75443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.73  E-value=7.1e-18  Score=177.13  Aligned_cols=149  Identities=26%  Similarity=0.318  Sum_probs=74.0

Q ss_pred             CEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCC--CcchhccCCCCCcEEE
Q 040888           70 SVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSG--TVPYSISQMSELKYLN  145 (495)
Q Consensus        70 ~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~  145 (495)
                      +++.|++++|++.+...  +..+++|++|+|++|.+++.+|..+.  ++|++|+|++|++++  .+|..+..+++|++|+
T Consensus       303 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~  380 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD  380 (520)
T ss_dssp             CCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEE
T ss_pred             ceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEE
Confidence            35555555555443221  13455555555555555554554443  455555555555554  3444455555555555


Q ss_pred             cccCcCCCccchh-hhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCc
Q 040888          146 LGSNQLNGQLSDM-FQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFS  222 (495)
Q Consensus       146 L~~N~l~g~~p~~-~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~  222 (495)
                      |++|++++.+|.. +..+++|+.|++++|++++.+|..+.  ++|+.|+|++|+++..+..+..++ |+.|++++|+++
T Consensus       381 Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~  457 (520)
T 2z7x_B          381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK  457 (520)
T ss_dssp             CCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC
Confidence            5555555534432 44455555555555555555444433  455555555555553333333333 555555555555

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.73  E-value=7e-18  Score=178.98  Aligned_cols=173  Identities=22%  Similarity=0.295  Sum_probs=116.0

Q ss_pred             CCEeEEEcCCCCCcccc--ccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcc-hhccCCCCCcE
Q 040888           69 SSVTEIKLSGLGLNGQL--GYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVP-YSISQMSELKY  143 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~--~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~  143 (495)
                      .+++.|+|++|.+++..  +..+.++++|++|+|++|.+.+..+. +.  ++|++|+|++|.+++..| ..+.++++|++
T Consensus       347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  425 (570)
T 2z63_A          347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  425 (570)
T ss_dssp             TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred             CCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence            56777788777777654  56677777777777777776643332 32  677777777777766555 45667777777


Q ss_pred             EEcccCcCCCccchhhhCCCCCcEEEccCCcCC-CcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCC
Q 040888          144 LNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLT-GELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNK  220 (495)
Q Consensus       144 L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~-g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~  220 (495)
                      |+|++|.+++.+|..+..+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|++++.+ ..+..++ |+.|++++|.
T Consensus       426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  505 (570)
T 2z63_A          426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ  505 (570)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence            777777777777777777777777777777776 466777777777777777777777664 4555555 7777777777


Q ss_pred             CcccCchhhhhcc-----cCCCCcCCC
Q 040888          221 FSGWVPEELKDIA-----KTGGNSWSS  242 (495)
Q Consensus       221 l~g~~p~~l~~l~-----~~~~n~~~~  242 (495)
                      +++..|..+..++     .+.+|++.|
T Consensus       506 l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          506 LKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCCHHHhhcccCCcEEEecCCcccC
Confidence            7776666555544     344555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.73  E-value=2.4e-17  Score=163.01  Aligned_cols=158  Identities=22%  Similarity=0.306  Sum_probs=105.6

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCC--CCCCCCC-CCCcEEECcCCcCCCCcchhccCCCCCcEEE
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKD--SIPYQLP-PNLKHLDLSENQFSGTVPYSISQMSELKYLN  145 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g--~~p~~~~-~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  145 (495)
                      .+++.|+|++|.+++..+..|.++++|+.|+|++|.++.  ..|..+. .+|++|++++|++++ +|..+.  ++|+.|+
T Consensus       123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~~--~~L~~L~  199 (332)
T 2ft3_A          123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLP--ETLNELH  199 (332)
T ss_dssp             TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSSC--SSCSCCB
T ss_pred             ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCcccc--CCCCEEE
Confidence            478899999999987777778999999999999998853  4444443 366666777666664 444433  5666666


Q ss_pred             cccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCccc
Q 040888          146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGW  224 (495)
Q Consensus       146 L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~  224 (495)
                      |++|.+++..+..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|+++..+..+..++ |+.|++++|.+++.
T Consensus       200 l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~  279 (332)
T 2ft3_A          200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV  279 (332)
T ss_dssp             CCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCcc
Confidence            66666666666666666666666666666666655566666666666666666664434444444 66666666666655


Q ss_pred             Cchhh
Q 040888          225 VPEEL  229 (495)
Q Consensus       225 ~p~~l  229 (495)
                      .+..+
T Consensus       280 ~~~~~  284 (332)
T 2ft3_A          280 GVNDF  284 (332)
T ss_dssp             CTTSS
T ss_pred             ChhHc
Confidence            44444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.73  E-value=3.9e-18  Score=167.62  Aligned_cols=164  Identities=22%  Similarity=0.223  Sum_probs=125.9

Q ss_pred             CCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcc
Q 040888           68 GSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLG  147 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~  147 (495)
                      ..+++.|+|++|.+++..+  +..+++|++|+|++|.+++..+   .++|++|+|++|++++..+.   .+++|+.|+|+
T Consensus        57 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~---~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~  128 (317)
T 3o53_A           57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV---GPSIETLHAANNNISRVSCS---RGQGKKNIYLA  128 (317)
T ss_dssp             CTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE---CTTCCEEECCSSCCSEEEEC---CCSSCEEEECC
T ss_pred             CCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC---CCCcCEEECCCCccCCcCcc---ccCCCCEEECC
Confidence            3578888888888887665  8888888888888888875332   27888888888888865544   36789999999


Q ss_pred             cCcCCCccchhhhCCCCCcEEEccCCcCCCcCccccc-CCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcccC
Q 040888          148 SNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFA-SLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWV  225 (495)
Q Consensus       148 ~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~-~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~~  225 (495)
                      +|++++..+..+..+++|++|+|++|.+++..|..+. .+++|++|+|++|.+++..... .++ |+.|++++|.+++..
T Consensus       129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~l~  207 (317)
T 3o53_A          129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMG  207 (317)
T ss_dssp             SSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEEC
T ss_pred             CCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCcch
Confidence            9999988888888899999999999999987777764 7889999999999988764333 344 899999999998654


Q ss_pred             chhhhhcc-----cCCCCcCC
Q 040888          226 PEELKDIA-----KTGGNSWS  241 (495)
Q Consensus       226 p~~l~~l~-----~~~~n~~~  241 (495)
                      | .+..++     .+.+|.+.
T Consensus       208 ~-~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          208 P-EFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             G-GGGGGTTCSEEECTTSCCC
T ss_pred             h-hhcccCcccEEECcCCccc
Confidence            4 466554     34455544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.73  E-value=5.8e-18  Score=159.29  Aligned_cols=162  Identities=21%  Similarity=0.247  Sum_probs=137.1

Q ss_pred             CCEeEEEcCCCC-CccccccccCCCCCCcEEECcC-CCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCc--
Q 040888           69 SSVTEIKLSGLG-LNGQLGYQLTNLKSVSYLDVSN-NNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELK--  142 (495)
Q Consensus        69 ~~v~~l~L~~n~-l~g~~~~~~~~l~~L~~L~Ls~-N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~--  142 (495)
                      .+++.|+|++|. +++..+..|.++++|++|+|++ |.+++..+..+.  ++|++|+|++|.+++ +|. +..+++|+  
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L  132 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF  132 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence            689999999997 8877777899999999999999 999865555543  899999999999997 776 88999998  


Q ss_pred             -EEEcccC-cCCCccchhhhCCCCCc-EEEccCCcCCCcCcccccCCCCCCEEeccCCc-ccccc-cccCCc-c-CcEEE
Q 040888          143 -YLNLGSN-QLNGQLSDMFQKNEKLE-TLDLSKNQLTGELPRSFASLSSLKKLYLQNNQ-FTGSI-NVLGKL-P-LDELN  215 (495)
Q Consensus       143 -~L~L~~N-~l~g~~p~~~~~l~~L~-~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~-l~g~~-~~~~~~-~-L~~l~  215 (495)
                       +|++++| ++++..+..|..+++|+ .|++++|+++ .+|......++|+.|+|++|+ +++.. ..+..+ + |+.|+
T Consensus       133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~  211 (239)
T 2xwt_C          133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD  211 (239)
T ss_dssp             EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred             cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence             9999999 99988888899999999 9999999999 666554444899999999995 98766 567777 5 99999


Q ss_pred             eecCCCcccCchhhhhcc
Q 040888          216 VENNKFSGWVPEELKDIA  233 (495)
Q Consensus       216 l~~N~l~g~~p~~l~~l~  233 (495)
                      +++|.+++..+..+.++.
T Consensus       212 l~~N~l~~l~~~~~~~L~  229 (239)
T 2xwt_C          212 VSQTSVTALPSKGLEHLK  229 (239)
T ss_dssp             CTTCCCCCCCCTTCTTCS
T ss_pred             CCCCccccCChhHhccCc
Confidence            999999965555455444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.72  E-value=6.7e-18  Score=165.38  Aligned_cols=173  Identities=20%  Similarity=0.252  Sum_probs=135.4

Q ss_pred             CCCEeEEEcCCCCCccccc----cccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCC--cc--hhccC
Q 040888           68 GSSVTEIKLSGLGLNGQLG----YQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGT--VP--YSISQ  137 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~g~~~----~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~--~p--~~~~~  137 (495)
                      ..+++.|+|++|.+++..+    ..+..+++|++|+|++|.+.+..|..+.  ++|++|||++|++.+.  ++  ..+..
T Consensus       116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  195 (310)
T 4glp_A          116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK  195 (310)
T ss_dssp             CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred             CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence            4679999999999998655    4566899999999999999887777665  8999999999998763  32  23478


Q ss_pred             CCCCcEEEcccCcCCCc--cch-hhhCCCCCcEEEccCCcCCCcCcccccCC---CCCCEEeccCCcccccccccCCccC
Q 040888          138 MSELKYLNLGSNQLNGQ--LSD-MFQKNEKLETLDLSKNQLTGELPRSFASL---SSLKKLYLQNNQFTGSINVLGKLPL  211 (495)
Q Consensus       138 l~~L~~L~L~~N~l~g~--~p~-~~~~l~~L~~L~ls~N~l~g~~p~~~~~l---~~L~~L~l~~N~l~g~~~~~~~~~L  211 (495)
                      +++|++|+|++|+++..  .+. .+..+++|++|+|++|++++.+|..+..+   ++|++|+|++|+|+..+..+. ..|
T Consensus       196 l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L  274 (310)
T 4glp_A          196 FPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKL  274 (310)
T ss_dssp             SCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCC
T ss_pred             CCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc-CCC
Confidence            99999999999999732  222 35788999999999999998888888877   699999999999995544443 349


Q ss_pred             cEEEeecCCCcc-cCchhhhhcc--cCCCCcCC
Q 040888          212 DELNVENNKFSG-WVPEELKDIA--KTGGNSWS  241 (495)
Q Consensus       212 ~~l~l~~N~l~g-~~p~~l~~l~--~~~~n~~~  241 (495)
                      +.|++++|++++ .++..+.++.  .+.+|.+.
T Consensus       275 ~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          275 RVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             SCEECCSCCCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred             CEEECCCCcCCCCchhhhCCCccEEECcCCCCC
Confidence            999999999998 4554444444  44555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.72  E-value=4.6e-17  Score=148.01  Aligned_cols=124  Identities=31%  Similarity=0.446  Sum_probs=68.2

Q ss_pred             EECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCC
Q 040888           98 LDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTG  177 (495)
Q Consensus        98 L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g  177 (495)
                      +++++|.++ .+|..++++|+.|+|++|+|+ .+|..|.++++|+.|+|++|+|++..+..|.++++|+.|+|++|+|++
T Consensus        15 l~~~~~~l~-~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~   92 (193)
T 2wfh_A           15 VRCSNKGLK-VLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC   92 (193)
T ss_dssp             EECTTSCCS-SCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             EEcCCCCCC-cCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence            333444433 344444455555555555555 455555555666666666666655555555555666666666666655


Q ss_pred             cCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcc
Q 040888          178 ELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSG  223 (495)
Q Consensus       178 ~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g  223 (495)
                      ..|..|..+++|+.|+|++|+|++.. ..+..++ |+.|++++|++.+
T Consensus        93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            55555555666666666666655544 2344444 5666666665553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.72  E-value=6.6e-18  Score=175.85  Aligned_cols=166  Identities=19%  Similarity=0.186  Sum_probs=141.0

Q ss_pred             CCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcc
Q 040888           68 GSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLG  147 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~  147 (495)
                      ..+++.|+|++|.+++..+     .++|+.|+|++|.+++..+.. .++|+.|+|++|.+++..|..++.+++|++|+|+
T Consensus        79 l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  152 (487)
T 3oja_A           79 LSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK  152 (487)
T ss_dssp             CTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCCEEECC-CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT
T ss_pred             CCCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCCCCccc-cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC
Confidence            3689999999999987553     389999999999999766654 4789999999999999999999999999999999


Q ss_pred             cCcCCCccchhhh-CCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcccC
Q 040888          148 SNQLNGQLSDMFQ-KNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWV  225 (495)
Q Consensus       148 ~N~l~g~~p~~~~-~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~~  225 (495)
                      +|.|++.+|..+. .+++|+.|+|++|.|++. |. +..+++|+.|+|++|.+++.++.+..++ |+.|++++|.|++ +
T Consensus       153 ~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-l  229 (487)
T 3oja_A          153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-I  229 (487)
T ss_dssp             TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-E
T ss_pred             CCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-c
Confidence            9999999888886 799999999999999976 32 4469999999999999999877677776 9999999999997 6


Q ss_pred             chhhhhcc-----cCCCCcCCC
Q 040888          226 PEELKDIA-----KTGGNSWSS  242 (495)
Q Consensus       226 p~~l~~l~-----~~~~n~~~~  242 (495)
                      |..+..++     .+.+|.+.|
T Consensus       230 p~~l~~l~~L~~L~l~~N~l~c  251 (487)
T 3oja_A          230 EKALRFSQNLEHFDLRGNGFHC  251 (487)
T ss_dssp             CTTCCCCTTCCEEECTTCCBCH
T ss_pred             chhhccCCCCCEEEcCCCCCcC
Confidence            76665544     455666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.72  E-value=6.2e-17  Score=158.39  Aligned_cols=148  Identities=26%  Similarity=0.358  Sum_probs=85.7

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      .+++.|+|++|.+++..+  +..+++|++|+|++|.+.+.-...-.++|++|+|++|++++. |. +..+++|++|+|++
T Consensus        63 ~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~  138 (308)
T 1h6u_A           63 NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDL  138 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCS
T ss_pred             CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCC
Confidence            456666666666665443  666666666666666665431111115666666666666643 22 66666666666666


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcccC
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWV  225 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~~  225 (495)
                      |++++..+  +..+++|+.|+|++|.+++..+  +..+++|+.|+|++|++++..+ +..++ |+.|++++|.+++..
T Consensus       139 n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~  211 (308)
T 1h6u_A          139 NQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS  211 (308)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG
T ss_pred             CccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc
Confidence            66665433  5566666666666666664322  5666666666666666665433 33333 666666666666543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.72  E-value=1.3e-17  Score=176.98  Aligned_cols=155  Identities=23%  Similarity=0.332  Sum_probs=85.6

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCC--CCCCCCC--CCCcEEECcCCcCCCCcch-hccCCCCCcE
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKD--SIPYQLP--PNLKHLDLSENQFSGTVPY-SISQMSELKY  143 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g--~~p~~~~--~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~  143 (495)
                      .+++.|+|++|.+++.+|..+.++++|++|+|++|++++  .+|..+.  ++|++|+|++|++++.+|. .+..+++|++
T Consensus       353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~  432 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV  432 (562)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred             CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence            355566666666666555556666666666666666554  2222222  5566666666666553443 2555566666


Q ss_pred             EEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccc-cCCcc-CcEEEeecCCC
Q 040888          144 LNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINV-LGKLP-LDELNVENNKF  221 (495)
Q Consensus       144 L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~-~~~~~-L~~l~l~~N~l  221 (495)
                      |+|++|++++.+|..+.  ++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++.+.. +..++ |+.|++++|++
T Consensus       433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             EECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred             EECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence            66666666555544332  45666666666665 4555555666666666666666543332 44444 56666666666


Q ss_pred             cccCc
Q 040888          222 SGWVP  226 (495)
Q Consensus       222 ~g~~p  226 (495)
                      ++..|
T Consensus       510 ~c~c~  514 (562)
T 3a79_B          510 DCTCP  514 (562)
T ss_dssp             CCCHH
T ss_pred             CCCcc
Confidence            55444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.72  E-value=1.9e-17  Score=174.50  Aligned_cols=147  Identities=29%  Similarity=0.340  Sum_probs=114.0

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      .+++.|+|++|.|++ +|. +.+  +|+.|+|++|.|++ +|. ..++|+.|+|++|+|++ +|.   .+++|++|+|++
T Consensus       100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~  169 (571)
T 3cvr_A          100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE-LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRN  169 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred             CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC-cCccccEEeCCCCccCc-CCC---cCCCcCEEECCC
Confidence            456667777777766 555 544  67777777777776 555 45778888888888875 555   567899999999


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCC-------CEEeccCCcccccccccCCcc-CcEEEeecCC
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSL-------KKLYLQNNQFTGSINVLGKLP-LDELNVENNK  220 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L-------~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~  220 (495)
                      |+|++ +|. |.  ++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|+..+..+..++ |+.|+|++|+
T Consensus       170 N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          170 NQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             SCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             CCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence            99987 666 55  89999999999999 7777 655  77       999999999997666566676 9999999999


Q ss_pred             CcccCchhhhhcc
Q 040888          221 FSGWVPEELKDIA  233 (495)
Q Consensus       221 l~g~~p~~l~~l~  233 (495)
                      |++.+|..+..+.
T Consensus       242 l~~~~p~~l~~l~  254 (571)
T 3cvr_A          242 LSSRIRESLSQQT  254 (571)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHhh
Confidence            9999999998865

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.72  E-value=3.3e-17  Score=168.43  Aligned_cols=173  Identities=25%  Similarity=0.365  Sum_probs=147.6

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcch-hccCCCCCcEEE
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPY-SISQMSELKYLN  145 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~  145 (495)
                      .+++.|+|++|.+++..+..|..+++|++|+|++|.+.+..+..+.  ++|++|+|++|+..+.++. .|.++++|++|+
T Consensus       112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~  191 (440)
T 3zyj_A          112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN  191 (440)
T ss_dssp             SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred             ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence            5899999999999988888899999999999999999865554554  8999999999655545554 789999999999


Q ss_pred             cccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcc
Q 040888          146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSG  223 (495)
Q Consensus       146 L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g  223 (495)
                      |++|+++ .+| .+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++.. ..+..++ |+.|+|++|++++
T Consensus       192 L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  269 (440)
T 3zyj_A          192 LAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL  269 (440)
T ss_dssp             CTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred             CCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence            9999998 455 3788999999999999999998999999999999999999999877 5677777 9999999999998


Q ss_pred             cCchhhhhcc-----cCCCCcCCCC
Q 040888          224 WVPEELKDIA-----KTGGNSWSSS  243 (495)
Q Consensus       224 ~~p~~l~~l~-----~~~~n~~~~~  243 (495)
                      ..+..+..+.     .+.+|+|.|.
T Consensus       270 ~~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          270 LPHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             CCTTTTSSCTTCCEEECCSSCEECS
T ss_pred             cChhHhccccCCCEEEcCCCCccCC
Confidence            7777666554     5677877653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.72  E-value=6.2e-17  Score=144.94  Aligned_cols=131  Identities=24%  Similarity=0.391  Sum_probs=118.7

Q ss_pred             CcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCc
Q 040888           95 VSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQ  174 (495)
Q Consensus        95 L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~  174 (495)
                      .+.+++++|.++ .+|..++++|+.|+|++|++++..+..+..+++|++|+|++|+|++..+..|..+++|+.|+|++|+
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEecCCCCc-cCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            578999999998 6788888999999999999998777788999999999999999998888888999999999999999


Q ss_pred             CCCcCcccccCCCCCCEEeccCCccccccc-ccCCcc-CcEEEeecCCCcccCc
Q 040888          175 LTGELPRSFASLSSLKKLYLQNNQFTGSIN-VLGKLP-LDELNVENNKFSGWVP  226 (495)
Q Consensus       175 l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~-~~~~~~-L~~l~l~~N~l~g~~p  226 (495)
                      +++..+..+..+++|+.|+|++|++++.+. .+..++ |+.|++++|++++..|
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            998877788999999999999999998774 456666 9999999999998776

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.72  E-value=4.1e-17  Score=172.37  Aligned_cols=164  Identities=23%  Similarity=0.285  Sum_probs=143.4

Q ss_pred             EecCCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCc
Q 040888           65 TCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELK  142 (495)
Q Consensus        65 ~c~~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~  142 (495)
                      .|....+  .++++++++ .+|..+.  ++|++|||++|++++..|..+.  ++|++|+|++|++++..|..|.++++|+
T Consensus         3 ~C~~~~~--c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   77 (549)
T 2z81_A            3 SCDASGV--CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE   77 (549)
T ss_dssp             EECTTSE--EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             cCCCCce--EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCC
Confidence            5765454  788999998 4666554  7899999999999988787776  8999999999999998889999999999


Q ss_pred             EEEcccCcCCCccchhhhCCCCCcEEEccCCcCCC-cCcccccCCCCCCEEeccCCcccccc--cccCCcc-CcEEEeec
Q 040888          143 YLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTG-ELPRSFASLSSLKKLYLQNNQFTGSI--NVLGKLP-LDELNVEN  218 (495)
Q Consensus       143 ~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~~L~l~~N~l~g~~--~~~~~~~-L~~l~l~~  218 (495)
                      +|+|++|++++..|..|+++++|++|+|++|.+++ .+|..++++++|++|++++|.+.+.+  ..+..++ |+.|++++
T Consensus        78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A           78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence            99999999999988889999999999999999997 46788999999999999999965555  4677777 99999999


Q ss_pred             CCCcccCchhhhhcc
Q 040888          219 NKFSGWVPEELKDIA  233 (495)
Q Consensus       219 N~l~g~~p~~l~~l~  233 (495)
                      |.+++.+|..+..+.
T Consensus       158 n~l~~~~~~~l~~l~  172 (549)
T 2z81_A          158 LSLRNYQSQSLKSIR  172 (549)
T ss_dssp             TTCCEECTTTTTTCS
T ss_pred             CcccccChhhhhccc
Confidence            999999998876543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.71  E-value=8e-17  Score=156.24  Aligned_cols=146  Identities=30%  Similarity=0.446  Sum_probs=74.8

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      .+++.|+|++|.+++..+  +.++++|++|+|++|.+++.-+..-.++|++|+|++|++++.  +.+..+++|+.|+|++
T Consensus        68 ~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~  143 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGN  143 (291)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCS
T ss_pred             CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccC
Confidence            445555555555554433  555555555555555555421111115555555555555542  2355555555555555


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcc
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSG  223 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g  223 (495)
                      |++++.  +.+..+++|+.|+|++|++++..|  +..+++|+.|+|++|.+++.. .+..++ |+.|++++|+++.
T Consensus       144 n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          144 NKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             SCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCcccC
Confidence            555543  345555555555555555554333  555555555555555555432 233443 5555555555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.71  E-value=2.5e-17  Score=143.12  Aligned_cols=126  Identities=29%  Similarity=0.356  Sum_probs=104.5

Q ss_pred             CCEeEEEcCCCCCc-cccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEE
Q 040888           69 SSVTEIKLSGLGLN-GQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLN  145 (495)
Q Consensus        69 ~~v~~l~L~~n~l~-g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  145 (495)
                      .+++.|+|++|.++ +.+|..+..+++|++|+|++|.+++.  ..+.  ++|++|+|++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            46889999999998 78888888999999999999998876  3333  7889999999999887888888888999999


Q ss_pred             cccCcCCCc-cchhhhCCCCCcEEEccCCcCCCcCc---ccccCCCCCCEEeccC
Q 040888          146 LGSNQLNGQ-LSDMFQKNEKLETLDLSKNQLTGELP---RSFASLSSLKKLYLQN  196 (495)
Q Consensus       146 L~~N~l~g~-~p~~~~~l~~L~~L~ls~N~l~g~~p---~~~~~l~~L~~L~l~~  196 (495)
                      |++|++++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999998874 45778888889999999998887655   4688888888888763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.71  E-value=3.5e-17  Score=145.22  Aligned_cols=131  Identities=27%  Similarity=0.342  Sum_probs=83.6

Q ss_pred             CCEeEEEcCCCCCc-cccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEE
Q 040888           69 SSVTEIKLSGLGLN-GQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLN  145 (495)
Q Consensus        69 ~~v~~l~L~~n~l~-g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  145 (495)
                      .+++.|+|++|.++ +.+|..+..+++|++|+|++|.+++.  ..+.  ++|++|+|++|++++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            35677777777776 66666667777777777777776654  2222  5666666666666666666666666666666


Q ss_pred             cccCcCCCcc-chhhhCCCCCcEEEccCCcCCCcCc---ccccCCCCCCEEeccCCcccc
Q 040888          146 LGSNQLNGQL-SDMFQKNEKLETLDLSKNQLTGELP---RSFASLSSLKKLYLQNNQFTG  201 (495)
Q Consensus       146 L~~N~l~g~~-p~~~~~l~~L~~L~ls~N~l~g~~p---~~~~~l~~L~~L~l~~N~l~g  201 (495)
                      |++|+|++.. +..+..+++|+.|++++|.+++..+   ..+..+++|++|++++|.+..
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            6666666532 2556666666666666666664433   356666666666666666543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.70  E-value=1.5e-16  Score=155.73  Aligned_cols=147  Identities=28%  Similarity=0.426  Sum_probs=128.0

Q ss_pred             CCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcc
Q 040888           68 GSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLG  147 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~  147 (495)
                      ..+++.|+|++|.+++.  +.+..+++|++|+|++|.+++..+..-.++|++|+|++|.+++..+  +..+++|+.|+|+
T Consensus        84 l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~  159 (308)
T 1h6u_A           84 LTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIG  159 (308)
T ss_dssp             CCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECC
T ss_pred             CCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEcc
Confidence            36899999999999875  3699999999999999999975443333899999999999997654  8999999999999


Q ss_pred             cCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcc
Q 040888          148 SNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSG  223 (495)
Q Consensus       148 ~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g  223 (495)
                      +|++++..+  +..+++|+.|++++|++++..+  +..+++|+.|+|++|++++..+ +..++ |+.|++++|++++
T Consensus       160 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          160 NAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             SSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred             CCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence            999997544  8999999999999999996544  8899999999999999998764 66666 9999999999986

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.70  E-value=2.9e-17  Score=161.39  Aligned_cols=156  Identities=19%  Similarity=0.171  Sum_probs=102.1

Q ss_pred             CCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcc
Q 040888           68 GSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLG  147 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~  147 (495)
                      ..+++.|+|++|.+++..+     +++|++|+|++|.+++..+.. .++|++|+|++|++++..|..+..+++|++|+|+
T Consensus        79 l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls  152 (317)
T 3o53_A           79 LSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK  152 (317)
T ss_dssp             CTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCSEEEECC-CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred             cCCCCEEECcCCccccccC-----CCCcCEEECCCCccCCcCccc-cCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence            3577888888888775432     367777777777776544333 3567777777777776666667777777777777


Q ss_pred             cCcCCCccchhh-hCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcccC
Q 040888          148 SNQLNGQLSDMF-QKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWV  225 (495)
Q Consensus       148 ~N~l~g~~p~~~-~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~~  225 (495)
                      +|.+++..+..+ ..+++|++|+|++|.+++. |. ...+++|+.|+|++|++++.++.+..++ |+.|++++|.+++ +
T Consensus       153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~-l  229 (317)
T 3o53_A          153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-I  229 (317)
T ss_dssp             TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-E
T ss_pred             CCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc-h
Confidence            777776666555 3567777777777777644 32 2346677777777777776554455555 7777777777763 4


Q ss_pred             chhhhhc
Q 040888          226 PEELKDI  232 (495)
Q Consensus       226 p~~l~~l  232 (495)
                      |..+..+
T Consensus       230 ~~~~~~l  236 (317)
T 3o53_A          230 EKALRFS  236 (317)
T ss_dssp             CTTCCCC
T ss_pred             hhHhhcC
Confidence            5544433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.70  E-value=9.1e-17  Score=142.50  Aligned_cols=132  Identities=26%  Similarity=0.261  Sum_probs=117.5

Q ss_pred             CCCCCCcEEECcCCCCC-CCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCc
Q 040888           90 TNLKSVSYLDVSNNNLK-DSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLE  166 (495)
Q Consensus        90 ~~l~~L~~L~Ls~N~l~-g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~  166 (495)
                      ...++|+.|+|++|.++ +.+|..+.  ++|++|+|++|.+++.  ..+..+++|++|+|++|++++.+|..+..+++|+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            34478999999999998 78887765  8999999999999976  7899999999999999999998999999999999


Q ss_pred             EEEccCCcCCCcC-cccccCCCCCCEEeccCCccccccc----ccCCcc-CcEEEeecCCCcc
Q 040888          167 TLDLSKNQLTGEL-PRSFASLSSLKKLYLQNNQFTGSIN----VLGKLP-LDELNVENNKFSG  223 (495)
Q Consensus       167 ~L~ls~N~l~g~~-p~~~~~l~~L~~L~l~~N~l~g~~~----~~~~~~-L~~l~l~~N~l~g  223 (495)
                      +|+|++|++++.. +..+..+++|+.|++++|.+++...    .+..++ |+.|++++|.+..
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            9999999999642 3789999999999999999998775    677777 9999999998763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.69  E-value=1e-16  Score=145.74  Aligned_cols=125  Identities=27%  Similarity=0.333  Sum_probs=109.7

Q ss_pred             EEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCc
Q 040888           73 EIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQ  150 (495)
Q Consensus        73 ~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~  150 (495)
                      .+++++|+++ .+|..+.  ++|++|+|++|.++ .+|..+.  ++|++|+|++|+|++..+..|.++++|++|+|++|+
T Consensus        14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            4555666666 4555443  58999999999998 6776665  899999999999999888899999999999999999


Q ss_pred             CCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccc
Q 040888          151 LNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG  201 (495)
Q Consensus       151 l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g  201 (495)
                      |++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|.+..
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            999999999999999999999999997777789999999999999999975

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.69  E-value=1.7e-16  Score=168.85  Aligned_cols=148  Identities=31%  Similarity=0.447  Sum_probs=129.0

Q ss_pred             CCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEE
Q 040888           68 GSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLN  145 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  145 (495)
                      ..+++.|+|++|.+++..+  +..+++|+.|+|++|.|.+. | .+.  ++|+.|+|++|+|++.  +.+..+++|+.|+
T Consensus        64 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~  137 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLY  137 (605)
T ss_dssp             CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEE
T ss_pred             CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEE
Confidence            4689999999999998766  89999999999999999863 3 333  8999999999999963  4589999999999


Q ss_pred             cccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCccc
Q 040888          146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGW  224 (495)
Q Consensus       146 L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~  224 (495)
                      |++|.|++.  ..+..+++|+.|+|++|.|++..|  +..+++|+.|+|++|+|++. +.+..++ |+.|+|++|.+++.
T Consensus       138 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          138 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEECC
T ss_pred             CCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCcCC
Confidence            999999976  678999999999999999998766  89999999999999999875 5566676 99999999999875


Q ss_pred             Cc
Q 040888          225 VP  226 (495)
Q Consensus       225 ~p  226 (495)
                      ..
T Consensus       213 p~  214 (605)
T 1m9s_A          213 PI  214 (605)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=3.4e-16  Score=151.85  Aligned_cols=154  Identities=26%  Similarity=0.353  Sum_probs=131.3

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      .+++.|++++|.+...  +.+..+++|++|+|++|.+++..|..-.++|++|+|++|++++ +| .+..+++|++|+|++
T Consensus        46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEH  121 (291)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTT
T ss_pred             CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCC
Confidence            5799999999999865  3589999999999999999986663333899999999999986 44 499999999999999


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcccCch
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVPE  227 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~~p~  227 (495)
                      |++++.  +.+..+++|+.|++++|++++.  ..+..+++|+.|+|++|++++..+ +..++ |+.|++++|.+++. |.
T Consensus       122 n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l-~~  195 (291)
T 1h6t_A          122 NGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-RA  195 (291)
T ss_dssp             SCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-GG
T ss_pred             CcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC-hh
Confidence            999974  4688999999999999999975  578999999999999999998766 66666 99999999999863 32


Q ss_pred             hhhhcc
Q 040888          228 ELKDIA  233 (495)
Q Consensus       228 ~l~~l~  233 (495)
                       +..++
T Consensus       196 -l~~l~  200 (291)
T 1h6t_A          196 -LAGLK  200 (291)
T ss_dssp             -GTTCT
T ss_pred             -hccCC
Confidence             44443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.68  E-value=3e-16  Score=162.52  Aligned_cols=146  Identities=29%  Similarity=0.361  Sum_probs=79.9

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      .+++.|+|++|.+.+..|  ++.+++|+.|+|++|.+.+.-...-.++|+.|+|++|.+++..|  +..+++|+.|+|++
T Consensus       199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~  274 (466)
T 1o6v_A          199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA  274 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred             CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCC
Confidence            456677777776666544  55566666666666666542111111556666666666655443  55556666666666


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcc
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSG  223 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g  223 (495)
                      |.+++..+  +..+++|+.|++++|++++..|  +..+++|+.|+|++|++++..+ +..++ |+.|++++|.+++
T Consensus       275 n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          275 NQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD  345 (466)
T ss_dssp             SCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred             CccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCC
Confidence            66554433  5555556666666665554333  4555555555555555555443 22333 5555555555554

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.68  E-value=3.1e-17  Score=159.25  Aligned_cols=89  Identities=28%  Similarity=0.572  Sum_probs=75.5

Q ss_pred             cCCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  478 (495)
                      ++|...+.||+|+||+||+|++.      +++.||||+++....  ...++|.+|+++|++++|||||+++|+|.+++..
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~--~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~   90 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASD--NARKDFHREAELLTNLQHEHIVKFYGVCVEGDPL   90 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCH--HHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCCh--HHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEE
Confidence            45667789999999999999863      477899999976432  3357899999999999999999999999999999


Q ss_pred             EEEEEecCCCCHhhhhC
Q 040888          479 ILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L~  495 (495)
                      ++|||||++|+|.++|+
T Consensus        91 ~lV~Ey~~~G~L~~~l~  107 (299)
T 4asz_A           91 IMVFEYMKHGDLNKFLR  107 (299)
T ss_dssp             EEEEECCTTCBHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHH
Confidence            99999999999999873

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.68  E-value=4.1e-17  Score=160.60  Aligned_cols=89  Identities=26%  Similarity=0.561  Sum_probs=77.2

Q ss_pred             cCCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  478 (495)
                      ++|...+.||+|+||+||+|++.      +++.||||+++....  ...++|.+|+++|++++|||||+++|+|.+.+..
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~--~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~  118 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASE--SARQDFQREAELLTMLQHQHIVRFFGVCTEGRPL  118 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSH--HHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCH--HHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEE
Confidence            45666789999999999999864      478999999975432  3357899999999999999999999999999999


Q ss_pred             EEEEEecCCCCHhhhhC
Q 040888          479 ILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L~  495 (495)
                      ++|||||++|+|.++|+
T Consensus       119 ~lV~Ey~~~G~L~~~l~  135 (329)
T 4aoj_A          119 LMVFEYMRHGDLNRFLR  135 (329)
T ss_dssp             EEEEECCTTCBHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHH
Confidence            99999999999999863

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.67  E-value=8.6e-17  Score=139.65  Aligned_cols=124  Identities=24%  Similarity=0.282  Sum_probs=106.3

Q ss_pred             CCCCcEEECcCCCCC-CCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEE
Q 040888           92 LKSVSYLDVSNNNLK-DSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETL  168 (495)
Q Consensus        92 l~~L~~L~Ls~N~l~-g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L  168 (495)
                      .++|+.|+|++|.++ +.+|..+.  ++|++|+|++|.+++.  ..+..+++|++|+|++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            467999999999998 78887665  8999999999999976  778999999999999999998889888889999999


Q ss_pred             EccCCcCCCc-CcccccCCCCCCEEeccCCccccccc----ccCCcc-CcEEEee
Q 040888          169 DLSKNQLTGE-LPRSFASLSSLKKLYLQNNQFTGSIN----VLGKLP-LDELNVE  217 (495)
Q Consensus       169 ~ls~N~l~g~-~p~~~~~l~~L~~L~l~~N~l~g~~~----~~~~~~-L~~l~l~  217 (495)
                      ++++|.+++. .|..+..+++|++|++++|.+++...    .+..++ |+.||++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            9999999874 45789999999999999999987664    455555 7887765

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.67  E-value=4.4e-17  Score=158.83  Aligned_cols=87  Identities=26%  Similarity=0.453  Sum_probs=74.5

Q ss_pred             CcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEE
Q 040888          407 FATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~l  480 (495)
                      +...+.||+|+||+||+|++.      +++.||||+++.... ....++|.+|+.++++++|||||+++|+|.+++..++
T Consensus        28 ~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~-~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l  106 (308)
T 4gt4_A           28 VRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAE-GPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM  106 (308)
T ss_dssp             EEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CC-C-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             CeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccC-hHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEE
Confidence            445678999999999999873      467899999975432 2346789999999999999999999999999999999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      |||||++|+|.++|
T Consensus       107 V~Ey~~~G~L~~~L  120 (308)
T 4gt4_A          107 IFSYCSHGDLHEFL  120 (308)
T ss_dssp             EEECCSSCBHHHHH
T ss_pred             EEEcCCCCcHHHHH
Confidence            99999999999987

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=4.2e-16  Score=148.88  Aligned_cols=147  Identities=21%  Similarity=0.277  Sum_probs=125.0

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      .+++.|+|++|+++. ++ .+..+++|+.|+|++|.+++..|..-.++|++|+|++|++++ +|.. .. ++|+.|+|++
T Consensus        41 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~  115 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDN  115 (263)
T ss_dssp             TTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCS
T ss_pred             CcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccC
Confidence            689999999999985 44 789999999999999999976652223899999999999996 4433 33 9999999999


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcccC
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWV  225 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~~  225 (495)
                      |++++. + .+..+++|+.|+|++|++++. | .+..+++|+.|+|++|++++. ..+..++ |+.|++++|.+++..
T Consensus       116 N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          116 NELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             SCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             CccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCc
Confidence            999974 3 588999999999999999965 4 689999999999999999987 6666666 999999999998763

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.67  E-value=3.4e-16  Score=162.12  Aligned_cols=163  Identities=26%  Similarity=0.450  Sum_probs=137.3

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      .+++.|+|++|.+++.  +.+..+++|+.|+|++|.+.+..|..-.++|+.|+|++|.+++..|  +..+++|+.|+|++
T Consensus       221 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~  296 (466)
T 1o6v_A          221 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNE  296 (466)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred             CCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCC
Confidence            6799999999999874  4688999999999999999987764444899999999999997655  88999999999999


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcccCch
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVPE  227 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~~p~  227 (495)
                      |++++..+  +..+++|+.|+|++|++++..|  +..+++|+.|++++|++++. +.+..++ |+.|++++|.+++..| 
T Consensus       297 n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-  370 (466)
T 1o6v_A          297 NQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP-  370 (466)
T ss_dssp             SCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG-
T ss_pred             CcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccch-
Confidence            99998655  7889999999999999998766  78999999999999999886 4566666 9999999999999887 


Q ss_pred             hhhhcc-----cCCCCcCCC
Q 040888          228 ELKDIA-----KTGGNSWSS  242 (495)
Q Consensus       228 ~l~~l~-----~~~~n~~~~  242 (495)
                       +..++     .+.+|.+..
T Consensus       371 -~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          371 -LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             -GTTCTTCCEEECCCEEEEC
T ss_pred             -hhcCCCCCEEeccCCcccC
Confidence             55554     344555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.66  E-value=4.8e-16  Score=165.40  Aligned_cols=154  Identities=26%  Similarity=0.357  Sum_probs=132.9

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      .+|+.|+|++|.+... + .+..|++|+.|+|++|.|.+..|..-.++|+.|+|++|+|++ +| .+..+++|+.|+|++
T Consensus        43 ~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEH  118 (605)
T ss_dssp             TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTT
T ss_pred             CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecC
Confidence            5789999999999864 3 589999999999999999987663334899999999999996 34 799999999999999


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcccCch
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVPE  227 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~~p~  227 (495)
                      |.|++.  +.+..+++|+.|+|++|.|++.  ..+..+++|+.|+|++|.|++.++ +..++ |+.|+|++|.|++. | 
T Consensus       119 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l-~-  191 (605)
T 1m9s_A          119 NGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-R-  191 (605)
T ss_dssp             SCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-G-
T ss_pred             CCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC-h-
Confidence            999974  4588999999999999999975  679999999999999999998777 66666 99999999999974 3 


Q ss_pred             hhhhcc
Q 040888          228 ELKDIA  233 (495)
Q Consensus       228 ~l~~l~  233 (495)
                      .+..++
T Consensus       192 ~l~~l~  197 (605)
T 1m9s_A          192 ALAGLK  197 (605)
T ss_dssp             GGTTCT
T ss_pred             HHccCC
Confidence            455544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.66  E-value=9.7e-16  Score=152.17  Aligned_cols=156  Identities=21%  Similarity=0.341  Sum_probs=116.0

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      .+++.|++++|.+.+..+  +..+++|+.|+|++|.+.+..+..-.++|+.|++++|.+++..+  +..+++|+.|+|++
T Consensus       155 ~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~  230 (347)
T 4fmz_A          155 TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGN  230 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             CCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccC
Confidence            578888888888876654  77888888888888888765443333788888888888876544  77788888888888


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcccCch
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVPE  227 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~~p~  227 (495)
                      |++++..+  +..+++|+.|++++|.+++.  +.+..+++|+.|++++|++++. +.+..++ |+.|++++|.+++..|.
T Consensus       231 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~  305 (347)
T 4fmz_A          231 NKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDME  305 (347)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred             CccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChh
Confidence            88876544  77778888888888888753  3577788888888888887764 3444454 78888888888877777


Q ss_pred             hhhhcc
Q 040888          228 ELKDIA  233 (495)
Q Consensus       228 ~l~~l~  233 (495)
                      .+..++
T Consensus       306 ~l~~l~  311 (347)
T 4fmz_A          306 VIGGLT  311 (347)
T ss_dssp             HHHTCT
T ss_pred             Hhhccc
Confidence            776655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.65  E-value=1.4e-15  Score=156.89  Aligned_cols=158  Identities=28%  Similarity=0.431  Sum_probs=114.7

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      .+++.|+|++|.+++ +| .++++++|++|+|++|++++ +|.. .++|++|+|++|++++ +| .++++++|++|++++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~-~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL-PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADN  204 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC-CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC-cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCC
Confidence            467788888888876 66 58888888888888888885 5543 3588888888888886 56 588888888888888


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCccCcEEEeecCCCcccCchh
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEE  228 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~L~~l~l~~N~l~g~~p~~  228 (495)
                      |++++ +|...   .+|+.|++++|.++ .+|. +..+++|+.|++++|++++.....  ..|+.|++++|.+++ +|..
T Consensus       205 N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l~~N~l~~-l~~~  275 (454)
T 1jl5_A          205 NSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDLP--PSLEALNVRDNYLTD-LPEL  275 (454)
T ss_dssp             SCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSCC--TTCCEEECCSSCCSC-CCCC
T ss_pred             CcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCcccccc--cccCEEECCCCcccc-cCcc
Confidence            88886 44332   47888888888888 6674 788888888888888888644321  237888888888876 5554


Q ss_pred             hhhcc--cCCCCcCC
Q 040888          229 LKDIA--KTGGNSWS  241 (495)
Q Consensus       229 l~~l~--~~~~n~~~  241 (495)
                      +.++.  .+.+|.+.
T Consensus       276 ~~~L~~L~ls~N~l~  290 (454)
T 1jl5_A          276 PQSLTFLDVSENIFS  290 (454)
T ss_dssp             CTTCCEEECCSSCCS
T ss_pred             cCcCCEEECcCCccC
Confidence            44443  34445443

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.65  E-value=1.9e-16  Score=156.25  Aligned_cols=90  Identities=23%  Similarity=0.428  Sum_probs=75.1

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||+||+|+. .+|+.||||++..........+.|.+|+++|++++|||||++++++.+++..|+|||
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE  103 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD  103 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence            5788899999999999999997 469999999997665443445789999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      ||++|+|.++|
T Consensus       104 y~~gg~L~~~i  114 (350)
T 4b9d_A          104 YCEGGDLFKRI  114 (350)
T ss_dssp             CCTTCBHHHHH
T ss_pred             CCCCCcHHHHH
Confidence            99999999987

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.65  E-value=6.9e-16  Score=153.23  Aligned_cols=156  Identities=25%  Similarity=0.425  Sum_probs=133.5

Q ss_pred             CCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcc
Q 040888           68 GSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLG  147 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~  147 (495)
                      ..+++.|+|++|.+.+..+  +..+++|+.|++++|.+.+..+..-.++|++|+|++|.+++..+  +..+++|++|+|+
T Consensus       176 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~  251 (347)
T 4fmz_A          176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIG  251 (347)
T ss_dssp             CTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             CCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECC
Confidence            3689999999999987654  88999999999999999976664344899999999999996554  8999999999999


Q ss_pred             cCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcccC
Q 040888          148 SNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWV  225 (495)
Q Consensus       148 ~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~~  225 (495)
                      +|.+++.  +.+..+++|+.|++++|++++.  +.+..+++|+.|++++|++++.. ..+..++ |+.|++++|.+++..
T Consensus       252 ~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  327 (347)
T 4fmz_A          252 TNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR  327 (347)
T ss_dssp             SSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred             CCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence            9999874  4688999999999999999864  45889999999999999999877 5566776 999999999999877


Q ss_pred             chhhhhcc
Q 040888          226 PEELKDIA  233 (495)
Q Consensus       226 p~~l~~l~  233 (495)
                      |  +..++
T Consensus       328 ~--~~~l~  333 (347)
T 4fmz_A          328 P--LASLS  333 (347)
T ss_dssp             G--GGGCT
T ss_pred             C--hhhhh
Confidence            7  44444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.64  E-value=2.8e-15  Score=154.73  Aligned_cols=141  Identities=22%  Similarity=0.290  Sum_probs=66.2

Q ss_pred             CEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcccC
Q 040888           70 SVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSN  149 (495)
Q Consensus        70 ~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N  149 (495)
                      +++.|+|++|.+++. |  ++.+++|++|+|++|.+++. |..-.++|++|+|++|++++ +|  ++.+++|++|+|++|
T Consensus        65 ~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A           65 GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARN  137 (457)
T ss_dssp             TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTS
T ss_pred             CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCC
Confidence            444444444444442 1  44444444444444444432 21112445555555555443 22  444455555555555


Q ss_pred             cCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCccc
Q 040888          150 QLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGW  224 (495)
Q Consensus       150 ~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~  224 (495)
                      +|++. +  ++.+++|++|++++|+..+.+  .+..+++|+.|++++|++++..  +..++ |+.|++++|.+++.
T Consensus       138 ~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~  206 (457)
T 3bz5_A          138 TLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL  206 (457)
T ss_dssp             CCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC
T ss_pred             cccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee
Confidence            55442 2  444445555555555433333  2445555555555555555532  33333 55666666665553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.64  E-value=1.2e-15  Score=135.71  Aligned_cols=107  Identities=30%  Similarity=0.440  Sum_probs=92.3

Q ss_pred             cEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcC
Q 040888           96 SYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQL  175 (495)
Q Consensus        96 ~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  175 (495)
                      +.|++++|.++ .+|..++++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+|
T Consensus        12 ~~l~~s~n~l~-~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l   90 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL   90 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCcC-ccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence            45666677766 47777778899999999999988888999999999999999999988888889999999999999999


Q ss_pred             CCcCcccccCCCCCCEEeccCCcccccc
Q 040888          176 TGELPRSFASLSSLKKLYLQNNQFTGSI  203 (495)
Q Consensus       176 ~g~~p~~~~~l~~L~~L~l~~N~l~g~~  203 (495)
                      ++..+..|..+++|+.|+|++|.++...
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           91 KSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            9877777999999999999999887653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.64  E-value=3.1e-15  Score=154.32  Aligned_cols=142  Identities=24%  Similarity=0.296  Sum_probs=103.9

Q ss_pred             CCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcc
Q 040888           68 GSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLG  147 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~  147 (495)
                      ..+++.|+|++|.+++. +  ++++++|++|+|++|++++ +|..-.++|++|+|++|++++. +  ++.+++|++|+++
T Consensus        84 l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~  156 (457)
T 3bz5_A           84 NTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LDVSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCH  156 (457)
T ss_dssp             CTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CCCTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECT
T ss_pred             CCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ecCCCCCcCCEEECCCCcccee-c--cccCCcCCEEECC
Confidence            35789999999999885 3  8899999999999999987 4533348899999999998873 3  6777778888888


Q ss_pred             cCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcc
Q 040888          148 SNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSG  223 (495)
Q Consensus       148 ~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g  223 (495)
                      +|+..+.++  +..+++|+.|++++|++++ +|  +..+++|+.|++++|++++.  .+..++ |+.|++++|++++
T Consensus       157 ~n~~~~~~~--~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          157 LNKKITKLD--VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             TCSCCCCCC--CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC
T ss_pred             CCCcccccc--cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc
Confidence            776655553  5667777777777777775 34  66667777777777776664  244444 6666777666666

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.63  E-value=6.9e-16  Score=153.70  Aligned_cols=177  Identities=18%  Similarity=0.207  Sum_probs=130.3

Q ss_pred             CCCCcccEEecC-----------CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC---CCCc-EEE
Q 040888           57 CGEHWKGITCSG-----------SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP---PNLK-HLD  121 (495)
Q Consensus        57 C~~~w~gv~c~~-----------~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~---~~L~-~L~  121 (495)
                      |.|.|..|.|+.           .+++.|+|++|+|+...+..|.++++|++|||++|++.+.+|....   ++|+ .++
T Consensus         7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X            7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            777899999974           2589999999999976667899999999999999999888886543   4544 577


Q ss_pred             CcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccC-CcCCCcCcccccCCC-CCCEEeccCCcc
Q 040888          122 LSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSK-NQLTGELPRSFASLS-SLKKLYLQNNQF  199 (495)
Q Consensus       122 Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~-N~l~g~~p~~~~~l~-~L~~L~l~~N~l  199 (495)
                      ++.|+++...|..|..+++|++|++++|+|++..+..+....++..|++++ |+++...+..|..+. .++.|+|++|+|
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            888999988888999999999999999999877776666666777777765 456544444555554 467777888777


Q ss_pred             ccccc-ccCCccCcEEEeecCCCcccCch-hhhhcc
Q 040888          200 TGSIN-VLGKLPLDELNVENNKFSGWVPE-ELKDIA  233 (495)
Q Consensus       200 ~g~~~-~~~~~~L~~l~l~~N~l~g~~p~-~l~~l~  233 (495)
                      +.... .+....++.+++++|+..+.+|. .|..++
T Consensus       167 ~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~  202 (350)
T 4ay9_X          167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS  202 (350)
T ss_dssp             CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred             cCCChhhccccchhHHhhccCCcccCCCHHHhccCc
Confidence            75543 33333477777765443344443 344444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.62  E-value=3.3e-17  Score=165.50  Aligned_cols=161  Identities=19%  Similarity=0.264  Sum_probs=106.8

Q ss_pred             CCEeEEEcCCCCCcc----ccccccCCCCCCcEEECcCCCCCCCCCCCCC---------------CCCcEEECcCCcCC-
Q 040888           69 SSVTEIKLSGLGLNG----QLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP---------------PNLKHLDLSENQFS-  128 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g----~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~---------------~~L~~L~Ls~N~l~-  128 (495)
                      .+++.|+|++|.+++    .+|..+.++++|++|+|++|.+++..+..+.               ++|++|+|++|+++ 
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~  173 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  173 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence            567777777777776    4666677777777777777776533222221               47777777777776 


Q ss_pred             CCcc---hhccCCCCCcEEEcccCcCC--C---ccchhhhCCCCCcEEEccCCcCC----CcCcccccCCCCCCEEeccC
Q 040888          129 GTVP---YSISQMSELKYLNLGSNQLN--G---QLSDMFQKNEKLETLDLSKNQLT----GELPRSFASLSSLKKLYLQN  196 (495)
Q Consensus       129 g~~p---~~~~~l~~L~~L~L~~N~l~--g---~~p~~~~~l~~L~~L~ls~N~l~----g~~p~~~~~l~~L~~L~l~~  196 (495)
                      +.+|   ..+..+++|+.|+|++|+++  |   .+|..+..+++|+.|+|++|.++    +.+|..+..+++|+.|+|++
T Consensus       174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~  253 (386)
T 2ca6_A          174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  253 (386)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence            4444   35666777777777777776  3   34446677777777777777775    55677777777777777777


Q ss_pred             Cccccc----c-ccc--CCcc-CcEEEeecCCCcc----cCchhh
Q 040888          197 NQFTGS----I-NVL--GKLP-LDELNVENNKFSG----WVPEEL  229 (495)
Q Consensus       197 N~l~g~----~-~~~--~~~~-L~~l~l~~N~l~g----~~p~~l  229 (495)
                      |.+++.    + ..+  +.++ |+.|+|++|.+++    .+|..+
T Consensus       254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l  298 (386)
T 2ca6_A          254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI  298 (386)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence            777654    2 222  2234 7777777777776    466655

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.62  E-value=1.3e-15  Score=138.91  Aligned_cols=128  Identities=13%  Similarity=0.265  Sum_probs=110.9

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNL  146 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  146 (495)
                      .+++.|+|++|.++  .++.+..+++|++|+|++|.+++..|..+.  ++|++|+|++|++++..|..+..+++|++|+|
T Consensus        66 ~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A           66 HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence            68999999999665  345799999999999999999987777776  89999999999999989999999999999999


Q ss_pred             ccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccc
Q 040888          147 GSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG  201 (495)
Q Consensus       147 ~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g  201 (495)
                      ++|.+.+.+| .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++.+
T Consensus       144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          144 SYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             cCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            9999444566 68999999999999999996 44 78999999999999999864

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.62  E-value=4.3e-16  Score=151.40  Aligned_cols=89  Identities=22%  Similarity=0.423  Sum_probs=75.2

Q ss_pred             ccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      .+++...+.||+|+||+||+|++.+  .||||+++.........+.|.+|+++|++++|||||+++|+|.+ +..++|||
T Consensus        35 ~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmE  111 (307)
T 3omv_A           35 ASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ  111 (307)
T ss_dssp             TTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred             HHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEE
Confidence            4566778999999999999999854  58999997654433345789999999999999999999999865 55799999


Q ss_pred             ecCCCCHhhhhC
Q 040888          484 YYRNGSLHEFLH  495 (495)
Q Consensus       484 y~~~GsL~~~L~  495 (495)
                      ||++|+|.++|+
T Consensus       112 y~~gGsL~~~l~  123 (307)
T 3omv_A          112 WCEGSSLYKHLH  123 (307)
T ss_dssp             CCSSCBHHHHHH
T ss_pred             cCCCCCHHHHHh
Confidence            999999999873

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.62  E-value=3e-15  Score=133.59  Aligned_cols=107  Identities=29%  Similarity=0.442  Sum_probs=91.3

Q ss_pred             cEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcC
Q 040888           96 SYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQL  175 (495)
Q Consensus        96 ~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  175 (495)
                      +.+++++|.+. .+|..++++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cEEEeCCCCCC-ccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence            46677777774 67777778899999999999988888999999999999999999987777788999999999999999


Q ss_pred             CCcCcccccCCCCCCEEeccCCcccccc
Q 040888          176 TGELPRSFASLSSLKKLYLQNNQFTGSI  203 (495)
Q Consensus       176 ~g~~p~~~~~l~~L~~L~l~~N~l~g~~  203 (495)
                      ++..+..|..+++|+.|+|++|.|....
T Consensus        94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           94 KSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             ceeCHHHhccccCCCEEEeCCCCccccc
Confidence            9766666899999999999999887544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.61  E-value=1.3e-16  Score=157.59  Aligned_cols=164  Identities=19%  Similarity=0.262  Sum_probs=121.0

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCC-CCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEE
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDS-IPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLN  145 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~-~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  145 (495)
                      ..++.|++++|.+.+..+. +..+++|++|+|++|.+++. +|..+.  ++|++|+|++|.+++..|..++.+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            4677888888888777655 55788888888888887754 543333  7888888888888877888888888888888


Q ss_pred             cccC-cCCCc-cchhhhCCCCCcEEEccCC-cCCCc-CcccccCCC-CCCEEeccCC--ccc-ccc-cccCCcc-CcEEE
Q 040888          146 LGSN-QLNGQ-LSDMFQKNEKLETLDLSKN-QLTGE-LPRSFASLS-SLKKLYLQNN--QFT-GSI-NVLGKLP-LDELN  215 (495)
Q Consensus       146 L~~N-~l~g~-~p~~~~~l~~L~~L~ls~N-~l~g~-~p~~~~~l~-~L~~L~l~~N--~l~-g~~-~~~~~~~-L~~l~  215 (495)
                      |++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|+|++|  .++ +.+ ..+..++ |+.|+
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            8888 67763 6777778888888888888 88764 567777888 8888888888  444 222 3444455 88888


Q ss_pred             eecCC-CcccCchhhhhcc
Q 040888          216 VENNK-FSGWVPEELKDIA  233 (495)
Q Consensus       216 l~~N~-l~g~~p~~l~~l~  233 (495)
                      +++|. +++..+..+..++
T Consensus       229 l~~~~~l~~~~~~~l~~l~  247 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLN  247 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCT
T ss_pred             CCCCCcCCHHHHHHHhCCC
Confidence            88888 6766676666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.61  E-value=9.1e-16  Score=137.21  Aligned_cols=131  Identities=25%  Similarity=0.268  Sum_probs=83.4

Q ss_pred             ccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCC
Q 040888           88 QLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKL  165 (495)
Q Consensus        88 ~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L  165 (495)
                      .+.++++|+.|+|++|.++. +|....  ++|++|+|++|.|++.  ..+..+++|++|+|++|+|++..+..+..+++|
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            34556667777777776663 332111  3677777777777653  456677777777777777775555555677777


Q ss_pred             cEEEccCCcCCCcCcc--cccCCCCCCEEeccCCcccccccc----cCCcc-CcEEEeecCCCc
Q 040888          166 ETLDLSKNQLTGELPR--SFASLSSLKKLYLQNNQFTGSINV----LGKLP-LDELNVENNKFS  222 (495)
Q Consensus       166 ~~L~ls~N~l~g~~p~--~~~~l~~L~~L~l~~N~l~g~~~~----~~~~~-L~~l~l~~N~l~  222 (495)
                      ++|+|++|+++ .+|.  .+..+++|+.|++++|.++.....    +..++ |+.||+++|.+.
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            77777777774 4454  666777777777777777654432    44444 777777777654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.59  E-value=1.6e-16  Score=157.03  Aligned_cols=152  Identities=22%  Similarity=0.232  Sum_probs=129.1

Q ss_pred             CCEeEEEcCCCCCccc-cccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCC-cCCCC-cchhccCCCCCcE
Q 040888           69 SSVTEIKLSGLGLNGQ-LGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSEN-QFSGT-VPYSISQMSELKY  143 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~-~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N-~l~g~-~p~~~~~l~~L~~  143 (495)
                      .+++.|+|++|.+++. ++..+..+++|++|+|++|.+++..|..+.  ++|++|+|++| .+++. +|..+.++++|++
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            6799999999999877 888899999999999999998876665544  89999999999 68763 7777889999999


Q ss_pred             EEcccC-cCCCc-cchhhhCCC-CCcEEEccCC--cCC-CcCcccccCCCCCCEEeccCCc-ccccc-cccCCcc-CcEE
Q 040888          144 LNLGSN-QLNGQ-LSDMFQKNE-KLETLDLSKN--QLT-GELPRSFASLSSLKKLYLQNNQ-FTGSI-NVLGKLP-LDEL  214 (495)
Q Consensus       144 L~L~~N-~l~g~-~p~~~~~l~-~L~~L~ls~N--~l~-g~~p~~~~~l~~L~~L~l~~N~-l~g~~-~~~~~~~-L~~l  214 (495)
                      |+|++| .+++. ++..+..++ +|++|++++|  .++ +.+|..+.++++|+.|++++|. +++.. ..+..++ |+.|
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L  252 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  252 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence            999999 99875 678888999 9999999999  566 5678888889999999999999 66544 5666666 9999


Q ss_pred             EeecCC
Q 040888          215 NVENNK  220 (495)
Q Consensus       215 ~l~~N~  220 (495)
                      ++++|.
T Consensus       253 ~l~~~~  258 (336)
T 2ast_B          253 SLSRCY  258 (336)
T ss_dssp             ECTTCT
T ss_pred             eCCCCC
Confidence            999996

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.59  E-value=1.3e-14  Score=149.65  Aligned_cols=147  Identities=31%  Similarity=0.438  Sum_probs=112.3

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      .+++.|+|++|.+++ +|..   +++|++|+|++|.+++ +|. ++++|++|+|++|++++ +| .++++++|++|++++
T Consensus        91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~-~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~  162 (454)
T 1jl5_A           91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD-LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDN  162 (454)
T ss_dssp             TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS-CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred             CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccC-CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCC
Confidence            578888888888887 6643   3788899999998885 332 33789999999999986 77 589999999999999


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCccCcEEEeecCCCcccCchh
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVPEE  228 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~L~~l~l~~N~l~g~~p~~  228 (495)
                      |++++ +|..+   .+|++|++++|++++ +| .++++++|+.|++++|++++.....  ..|+.|++++|.++ .+|. 
T Consensus       163 N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l~~n~l~-~lp~-  232 (454)
T 1jl5_A          163 NSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLP--LSLESIVAGNNILE-ELPE-  232 (454)
T ss_dssp             SCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCC--TTCCEEECCSSCCS-SCCC-
T ss_pred             CcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCc--CcccEEECcCCcCC-cccc-
Confidence            99986 56543   588999999999986 56 5888999999999999888743221  13778888888777 5663 


Q ss_pred             hhhcc
Q 040888          229 LKDIA  233 (495)
Q Consensus       229 l~~l~  233 (495)
                      +..++
T Consensus       233 ~~~l~  237 (454)
T 1jl5_A          233 LQNLP  237 (454)
T ss_dssp             CTTCT
T ss_pred             cCCCC
Confidence            54443

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.59  E-value=1.6e-15  Score=146.26  Aligned_cols=86  Identities=16%  Similarity=0.324  Sum_probs=73.4

Q ss_pred             ccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe----CCEEEEEEE
Q 040888          409 TGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE----QGHNILIYD  483 (495)
Q Consensus       409 ~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~----~~~~~lv~e  483 (495)
                      ..+.||+|+||+||+|... ++..||||++..........+.|.+|+++|++++|||||+++++|..    ++..++|||
T Consensus        30 ~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmE  109 (290)
T 3fpq_A           30 FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTE  109 (290)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred             eeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEe
Confidence            3567999999999999974 58999999997654433445779999999999999999999999975    245789999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      ||++|+|.++|
T Consensus       110 y~~gg~L~~~l  120 (290)
T 3fpq_A          110 LMTSGTLKTYL  120 (290)
T ss_dssp             CCCSCBHHHHH
T ss_pred             CCCCCCHHHHH
Confidence            99999999987

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.59  E-value=2.1e-16  Score=159.57  Aligned_cols=165  Identities=27%  Similarity=0.356  Sum_probs=116.7

Q ss_pred             CCEeEEEcCCCCCcccc----ccccCCCCCCcEEECcCC---CCCCCCCCCC---------CCCCcEEECcCCcCCC---
Q 040888           69 SSVTEIKLSGLGLNGQL----GYQLTNLKSVSYLDVSNN---NLKDSIPYQL---------PPNLKHLDLSENQFSG---  129 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~----~~~~~~l~~L~~L~Ls~N---~l~g~~p~~~---------~~~L~~L~Ls~N~l~g---  129 (495)
                      .+++.|+|++|.+++..    +..+..+++|++|+|++|   ++++.+|..+         .++|++|+|++|.+++   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            56888888888887763    345778888888888885   4445555433         2788888888888887   


Q ss_pred             -CcchhccCCCCCcEEEcccCcCCCccchh----hhCC---------CCCcEEEccCCcCC-CcCc---ccccCCCCCCE
Q 040888          130 -TVPYSISQMSELKYLNLGSNQLNGQLSDM----FQKN---------EKLETLDLSKNQLT-GELP---RSFASLSSLKK  191 (495)
Q Consensus       130 -~~p~~~~~l~~L~~L~L~~N~l~g~~p~~----~~~l---------~~L~~L~ls~N~l~-g~~p---~~~~~l~~L~~  191 (495)
                       .+|..+..+++|++|+|++|.|++..+..    +..+         ++|++|+|++|+++ +.+|   ..+..+++|+.
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence             47777888888888888888886543333    3333         78888888888887 4455   45667788888


Q ss_pred             EeccCCccc--c---ccc-ccCCcc-CcEEEeecCCCc----ccCchhhhhcc
Q 040888          192 LYLQNNQFT--G---SIN-VLGKLP-LDELNVENNKFS----GWVPEELKDIA  233 (495)
Q Consensus       192 L~l~~N~l~--g---~~~-~~~~~~-L~~l~l~~N~l~----g~~p~~l~~l~  233 (495)
                      |+|++|+++  |   .++ .+..++ |+.|+|++|.++    +.+|..+..++
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~  244 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP  244 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence            888888887  3   223 555555 888888888886    55666665544

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.59  E-value=1.4e-15  Score=149.79  Aligned_cols=88  Identities=23%  Similarity=0.319  Sum_probs=78.1

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      +.|+..+.||+|+||+||+|+.. +|+.||||++.....  ...+.+.+|+++|++++|||||++++++.+++..|+|||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~--~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmE  151 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQ--QRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME  151 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGC--SSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCch--hHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            45888899999999999999984 699999999975433  224568899999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      ||++|+|.+++
T Consensus       152 y~~gg~L~~~l  162 (346)
T 4fih_A          152 FLEGGALTDIV  162 (346)
T ss_dssp             CCTTEEHHHHH
T ss_pred             CCCCCcHHHHH
Confidence            99999999876

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.58  E-value=1.1e-15  Score=148.39  Aligned_cols=90  Identities=21%  Similarity=0.359  Sum_probs=79.7

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||+||+|+. .+|+.||||++.+.... ....+.+.+|+++|++++|||||++++++.+++..++||
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm  111 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL  111 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            5688899999999999999997 56999999999764321 223567999999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      |||++|+|.++|
T Consensus       112 Ey~~gG~L~~~i  123 (311)
T 4aw0_A          112 SYAKNGELLKYI  123 (311)
T ss_dssp             CCCTTEEHHHHH
T ss_pred             ecCCCCCHHHHH
Confidence            999999999986

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.57  E-value=1.2e-17  Score=152.54  Aligned_cols=130  Identities=28%  Similarity=0.334  Sum_probs=103.9

Q ss_pred             CCEeEEEcCCCCCcccccc------ccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCC
Q 040888           69 SSVTEIKLSGLGLNGQLGY------QLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSE  140 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~------~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~  140 (495)
                      ..++.++|+.+.+.|.+|.      .+..+++|++|+|++|.+++ +| .+.  ++|++|+|++|.++ .+|..+..+++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            4566667777777777776      88889999999999999886 66 444  88999999999888 67777777888


Q ss_pred             CcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCc-ccccCCCCCCEEeccCCcccccc
Q 040888          141 LKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELP-RSFASLSSLKKLYLQNNQFTGSI  203 (495)
Q Consensus       141 L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p-~~~~~l~~L~~L~l~~N~l~g~~  203 (495)
                      |++|+|++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+++.+
T Consensus        95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  156 (198)
T 1ds9_A           95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred             CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence            9999999999886 44 57788889999999998885332 46788888899999888887764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.57  E-value=1.5e-14  Score=138.02  Aligned_cols=127  Identities=24%  Similarity=0.313  Sum_probs=112.4

Q ss_pred             CCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcc
Q 040888           68 GSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLG  147 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~  147 (495)
                      ..+++.|+|++|.+++..+  +.++++|+.|+|++|++++ +|....++|++|+|++|++++. + .+..+++|+.|+|+
T Consensus        62 l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls  136 (263)
T 1xeu_A           62 FTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPSACLSRLFLDNNELRDT-D-SLIHLKNLEILSIR  136 (263)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCCSSCCEEECCSSCCSBS-G-GGTTCTTCCEEECT
T ss_pred             CCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCccccCcccEEEccCCccCCC-h-hhcCcccccEEECC
Confidence            3689999999999998765  9999999999999999997 3433338999999999999964 4 59999999999999


Q ss_pred             cCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc
Q 040888          148 SNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI  203 (495)
Q Consensus       148 ~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~  203 (495)
                      +|+|++. + .+..+++|+.|+|++|++++.  ..+..+++|+.|++++|.+++..
T Consensus       137 ~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          137 NNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             TSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             CCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            9999975 4 688999999999999999976  67899999999999999998764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.57  E-value=2.4e-15  Score=163.79  Aligned_cols=138  Identities=27%  Similarity=0.261  Sum_probs=107.3

Q ss_pred             CCCCcEEECcCCCCCCCC---------CCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhh
Q 040888           92 LKSVSYLDVSNNNLKDSI---------PYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQ  160 (495)
Q Consensus        92 l~~L~~L~Ls~N~l~g~~---------p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~  160 (495)
                      ...|+.++|+.|.+.+..         |..+.  +.|+.|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..|.
T Consensus       190 ~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  267 (727)
T 4b8c_D          190 QALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK  267 (727)
T ss_dssp             --------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG
T ss_pred             hhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh
Confidence            345677888888776532         33333  78999999999999 78888889999999999999999 8999999


Q ss_pred             CCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcccCchhhhhc
Q 040888          161 KNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVPEELKDI  232 (495)
Q Consensus       161 ~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~~p~~l~~l  232 (495)
                      .+++|++|+|++|.|+ .+|..|++|++|++|+|++|.|+..+..++.++ |+.|+|++|.|+|.+|..+..+
T Consensus       268 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~  339 (727)
T 4b8c_D          268 NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK  339 (727)
T ss_dssp             GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred             CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence            9999999999999999 889999999999999999999986666688887 9999999999999999988654

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.57  E-value=3.3e-15  Score=150.88  Aligned_cols=89  Identities=22%  Similarity=0.319  Sum_probs=78.8

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .+.|...+.||+|+||.||+|+. .+|+.||||++.....  ...+.+.+|+++|++++|||||++++++..++..|+||
T Consensus       150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~--~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVm  227 (423)
T 4fie_A          150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQ--QRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVM  227 (423)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTC--SSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccch--hHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEE
Confidence            35688889999999999999998 4699999999976533  22456899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      |||++|+|.+++
T Consensus       228 Ey~~gG~L~~~i  239 (423)
T 4fie_A          228 EFLEGGALTDIV  239 (423)
T ss_dssp             ECCTTEEHHHHH
T ss_pred             eCCCCCcHHHHH
Confidence            999999999876

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.56  E-value=1.4e-14  Score=154.43  Aligned_cols=87  Identities=33%  Similarity=0.352  Sum_probs=65.3

Q ss_pred             CCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEee
Q 040888          139 SELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVE  217 (495)
Q Consensus       139 ~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~  217 (495)
                      ++|+.|+|++|+|++ +|   ..+++|+.|+|++|+|+ .+|.   .+++|+.|+|++|+|+..+..+..++ |+.|+|+
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence            667778888887775 44   34577888888888887 4555   56778888888888885545566666 8888888


Q ss_pred             cCCCcccCchhhhhcc
Q 040888          218 NNKFSGWVPEELKDIA  233 (495)
Q Consensus       218 ~N~l~g~~p~~l~~l~  233 (495)
                      +|++++.+|..+..+.
T Consensus       293 ~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          293 GNPLSERTLQALREIT  308 (622)
T ss_dssp             SCCCCHHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHhcc
Confidence            8888888888777665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.56  E-value=3.4e-14  Score=151.45  Aligned_cols=71  Identities=34%  Similarity=0.409  Sum_probs=41.5

Q ss_pred             CCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcccCchhhhhcc-----cCC
Q 040888          163 EKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVPEELKDIA-----KTG  236 (495)
Q Consensus       163 ~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~~p~~l~~l~-----~~~  236 (495)
                      ++|+.|+|++|+|++ +|   ..+++|+.|+|++|+|+....   .++ |+.|++++|.|+ .+|..+.+++     .+.
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence            345555555555553 33   334556666666666664333   223 778888888887 6777777665     345


Q ss_pred             CCcCC
Q 040888          237 GNSWS  241 (495)
Q Consensus       237 ~n~~~  241 (495)
                      +|.+.
T Consensus       293 ~N~l~  297 (622)
T 3g06_A          293 GNPLS  297 (622)
T ss_dssp             SCCCC
T ss_pred             CCCCC
Confidence            55544

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.56  E-value=2.8e-15  Score=146.05  Aligned_cols=86  Identities=27%  Similarity=0.417  Sum_probs=69.3

Q ss_pred             CCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC----EEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG----HNILI  481 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~----~~~lv  481 (495)
                      ++...+.||+|+||+||+|++ +|+.||||++.....   ....+.+|+..+.+++|||||+++|+|..++    ..++|
T Consensus         4 ~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~---~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV   79 (303)
T 3hmm_A            4 TIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE---RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLV   79 (303)
T ss_dssp             GEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             EEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch---hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEE
Confidence            355678999999999999998 588999999965321   1223445666667899999999999998754    57999


Q ss_pred             EEecCCCCHhhhhC
Q 040888          482 YDYYRNGSLHEFLH  495 (495)
Q Consensus       482 ~ey~~~GsL~~~L~  495 (495)
                      ||||++|+|.++|+
T Consensus        80 ~Ey~~~gsL~~~l~   93 (303)
T 3hmm_A           80 SDYHEHGSLFDYLN   93 (303)
T ss_dssp             EECCTTCBHHHHHH
T ss_pred             ecCCCCCcHHHHHH
Confidence            99999999999874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.55  E-value=1.7e-14  Score=152.48  Aligned_cols=141  Identities=23%  Similarity=0.261  Sum_probs=114.3

Q ss_pred             CccccccccCCCCCCcEEE-CcCCCCCCCCCC---------CC-CCCCcEEECcCCcCCCCcchhccCCCCCcEEEcccC
Q 040888           81 LNGQLGYQLTNLKSVSYLD-VSNNNLKDSIPY---------QL-PPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSN  149 (495)
Q Consensus        81 l~g~~~~~~~~l~~L~~L~-Ls~N~l~g~~p~---------~~-~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N  149 (495)
                      +.|.+|..++++++|+.|| ++.|.+.. ++.         .+ ...|+.|+|++|+|++ +|. ++.+++|+.|+|++|
T Consensus       397 ~~~~~~~~l~~l~~L~~L~~l~~n~~~~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N  473 (567)
T 1dce_A          397 PLLYEKETLQYFSTLKAVDPMRAAYLDD-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHN  473 (567)
T ss_dssp             TGGGHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSS
T ss_pred             cccCCHHHHHHHHhcccCcchhhcccch-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcc
Confidence            3455566778888888888 56654321 110         01 1468999999999996 676 999999999999999


Q ss_pred             cCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCccccc--ccccCCcc-CcEEEeecCCCcccCc
Q 040888          150 QLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGS--INVLGKLP-LDELNVENNKFSGWVP  226 (495)
Q Consensus       150 ~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~--~~~~~~~~-L~~l~l~~N~l~g~~p  226 (495)
                      +|+ .+|..++.+++|+.|+|++|+|++ +| .++++++|+.|+|++|+|++.  +..++.++ |+.|+|++|.|++.+|
T Consensus       474 ~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          474 RLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             ccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            999 889999999999999999999996 67 899999999999999999988  56777777 9999999999998766


Q ss_pred             h
Q 040888          227 E  227 (495)
Q Consensus       227 ~  227 (495)
                      .
T Consensus       551 ~  551 (567)
T 1dce_A          551 I  551 (567)
T ss_dssp             C
T ss_pred             H
Confidence            3

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.55  E-value=1e-14  Score=154.16  Aligned_cols=118  Identities=24%  Similarity=0.336  Sum_probs=97.0

Q ss_pred             CCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEcc
Q 040888           94 SVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLS  171 (495)
Q Consensus        94 ~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls  171 (495)
                      .|+.|+|++|.|++ +|. +.  ++|+.|+|++|+|+ .+|..++++++|+.|+|++|+|++ +| .++.+++|+.|+|+
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            48889999998886 665 54  78999999999998 788889999999999999999987 66 78889999999999


Q ss_pred             CCcCCCcC-cccccCCCCCCEEeccCCcccccccccCC----cc-CcEEEe
Q 040888          172 KNQLTGEL-PRSFASLSSLKKLYLQNNQFTGSINVLGK----LP-LDELNV  216 (495)
Q Consensus       172 ~N~l~g~~-p~~~~~l~~L~~L~l~~N~l~g~~~~~~~----~~-L~~l~l  216 (495)
                      +|+|++.+ |..++.+++|+.|+|++|+|++.++....    ++ |+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99998876 88899999999999999999887643322    34 677653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.55  E-value=8.2e-15  Score=130.93  Aligned_cols=128  Identities=20%  Similarity=0.224  Sum_probs=108.7

Q ss_pred             CCEeEEEcCCCCCccccccccCCCC-CCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEE
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLK-SVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLN  145 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~-~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  145 (495)
                      .+++.|+|++|+++. ++. +..+. +|++|||++|.+++.  ..+.  ++|++|+|++|+|++..|..+..+++|++|+
T Consensus        19 ~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           19 VRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            579999999999995 454 55555 999999999999975  3343  8999999999999965555569999999999


Q ss_pred             cccCcCCCccch--hhhCCCCCcEEEccCCcCCCcCccc----ccCCCCCCEEeccCCccccc
Q 040888          146 LGSNQLNGQLSD--MFQKNEKLETLDLSKNQLTGELPRS----FASLSSLKKLYLQNNQFTGS  202 (495)
Q Consensus       146 L~~N~l~g~~p~--~~~~l~~L~~L~ls~N~l~g~~p~~----~~~l~~L~~L~l~~N~l~g~  202 (495)
                      |++|+|+ .+|.  .+..+++|+.|++++|.++ .+|..    +..+++|+.||+++|.+...
T Consensus        95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A           95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence            9999996 4665  7899999999999999998 56764    89999999999999987643

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.54  E-value=1.5e-15  Score=147.26  Aligned_cols=90  Identities=22%  Similarity=0.355  Sum_probs=73.1

Q ss_pred             cCCcccceeccCCceEEEEEEc----CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY----PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~----~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~l  480 (495)
                      ++|...+.||+|+||+||+|+.    ..++.||||+++...........+.+|+++|++++|||||++++++.+++..++
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i  103 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL  103 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence            4688899999999999999986    247899999998654433334578899999999999999999999999999999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      |||||++|+|.++|
T Consensus       104 vmEy~~gg~L~~~l  117 (304)
T 3ubd_A          104 ILDFLRGGDLFTRL  117 (304)
T ss_dssp             EECCCTTCEEHHHH
T ss_pred             EEEcCCCCCHHHHH
Confidence            99999999999886

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.54  E-value=6.5e-15  Score=143.00  Aligned_cols=89  Identities=21%  Similarity=0.336  Sum_probs=73.6

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC-------
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG-------  476 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~-------  476 (495)
                      ++|+..+.||+|+||+||+|+. .+|+.||||+++.... ....+.+.+|+++|++++|||||++++++...+       
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~-~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~   83 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNR-ELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP   83 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSS-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCC-HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence            4688889999999999999997 4699999999975432 223567999999999999999999999997644       


Q ss_pred             -----EEEEEEEecCCCCHhhhh
Q 040888          477 -----HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 -----~~~lv~ey~~~GsL~~~L  494 (495)
                           ..++|||||++|+|.+++
T Consensus        84 ~~~~~~l~ivmE~~~gg~L~~~l  106 (299)
T 4g31_A           84 SSPKVYLYIQMQLCRKENLKDWM  106 (299)
T ss_dssp             ---CEEEEEEEECCCSCCHHHHH
T ss_pred             cCCCcEEEEEEecCCCCcHHHHH
Confidence                 368999999999999886

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.54  E-value=1.2e-15  Score=152.56  Aligned_cols=154  Identities=24%  Similarity=0.306  Sum_probs=93.2

Q ss_pred             CEeEEEcCCCCCccccc----cccCCCC-CCcEEECcCCCCCCCCCCCC-------CCCCcEEECcCCcCCCCcchhcc-
Q 040888           70 SVTEIKLSGLGLNGQLG----YQLTNLK-SVSYLDVSNNNLKDSIPYQL-------PPNLKHLDLSENQFSGTVPYSIS-  136 (495)
Q Consensus        70 ~v~~l~L~~n~l~g~~~----~~~~~l~-~L~~L~Ls~N~l~g~~p~~~-------~~~L~~L~Ls~N~l~g~~p~~~~-  136 (495)
                      +++.|+|++|.+++..+    ..+.+++ +|++|+|++|.+++..+..+       .++|++|+|++|.+++..+..+. 
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            47777777777766555    5566666 67777777777765444222       15677777777777666555433 


Q ss_pred             ---CC-CCCcEEEcccCcCCCccchhhh----C-CCCCcEEEccCCcCCCcC----cccccCCC-CCCEEeccCCccccc
Q 040888          137 ---QM-SELKYLNLGSNQLNGQLSDMFQ----K-NEKLETLDLSKNQLTGEL----PRSFASLS-SLKKLYLQNNQFTGS  202 (495)
Q Consensus       137 ---~l-~~L~~L~L~~N~l~g~~p~~~~----~-l~~L~~L~ls~N~l~g~~----p~~~~~l~-~L~~L~l~~N~l~g~  202 (495)
                         .+ ++|++|+|++|+|++..+..+.    . .++|++|+|++|.+++..    +..+..++ +|++|+|++|++++.
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~  182 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK  182 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence               33 6777777777777665554433    2 256777777777776432    33334444 677777777777654


Q ss_pred             c-c----ccCCc--cCcEEEeecCCCcc
Q 040888          203 I-N----VLGKL--PLDELNVENNKFSG  223 (495)
Q Consensus       203 ~-~----~~~~~--~L~~l~l~~N~l~g  223 (495)
                      . .    .+...  .|+.|++++|.+++
T Consensus       183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          183 NCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             hHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            4 1    12222  36777777777665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.53  E-value=1.4e-15  Score=152.28  Aligned_cols=159  Identities=23%  Similarity=0.254  Sum_probs=130.0

Q ss_pred             EEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCC----CCCC--C-CCcEEECcCCcCCCCcchhccCC-----CC
Q 040888           73 EIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIP----YQLP--P-NLKHLDLSENQFSGTVPYSISQM-----SE  140 (495)
Q Consensus        73 ~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p----~~~~--~-~L~~L~Ls~N~l~g~~p~~~~~l-----~~  140 (495)
                      ..+|+.|+++|.+|..+...++|++|||++|.+++..+    ..+.  + +|++|+|++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46889999999999988888889999999999987554    2222  4 89999999999998888887775     99


Q ss_pred             CcEEEcccCcCCCccchhhh----CC-CCCcEEEccCCcCCCcCccccc----C-CCCCCEEeccCCcccccc-----cc
Q 040888          141 LKYLNLGSNQLNGQLSDMFQ----KN-EKLETLDLSKNQLTGELPRSFA----S-LSSLKKLYLQNNQFTGSI-----NV  205 (495)
Q Consensus       141 L~~L~L~~N~l~g~~p~~~~----~l-~~L~~L~ls~N~l~g~~p~~~~----~-l~~L~~L~l~~N~l~g~~-----~~  205 (495)
                      |++|+|++|.+++..+..+.    .+ ++|+.|+|++|.+++..+..+.    . .++|++|+|++|.+++..     ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            99999999999988776544    44 8999999999999987665543    3 369999999999998533     22


Q ss_pred             cCCc--cCcEEEeecCCCcccCchhhhh
Q 040888          206 LGKL--PLDELNVENNKFSGWVPEELKD  231 (495)
Q Consensus       206 ~~~~--~L~~l~l~~N~l~g~~p~~l~~  231 (495)
                      +...  .|+.|++++|.+++..+..+..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  189 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAK  189 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHH
Confidence            3333  3999999999999988876654

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.53  E-value=1.7e-14  Score=137.84  Aligned_cols=89  Identities=21%  Similarity=0.415  Sum_probs=72.9

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||+||+|.. .+|+.||||+++...... ...+.+.+|++++++++|||||++++++.+++..++||
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm   92 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI   92 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence            5788899999999999999997 469999999997654322 23567999999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+ +|+|.++|
T Consensus        93 Ey~-~g~L~~~l  103 (275)
T 3hyh_A           93 EYA-GNELFDYI  103 (275)
T ss_dssp             ECC-CEEHHHHH
T ss_pred             eCC-CCCHHHHH
Confidence            999 68998876

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.52  E-value=7e-15  Score=145.89  Aligned_cols=100  Identities=21%  Similarity=0.429  Sum_probs=82.1

Q ss_pred             ccHHHHHHhccCCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCC-CCcce
Q 040888          395 FSMADLLTATANFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRH-TNIAE  467 (495)
Q Consensus       395 ~~~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H-~niv~  467 (495)
                      +...+++...++|...+.||+|+||+||+|.+.      .++.||||++...... ...++|.+|+++|.+++| ||||+
T Consensus        54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~-~~~~~~~~E~~il~~l~hhpnIV~  132 (353)
T 4ase_A           54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATH-SEHRALMSELKILIHIGHHLNVVN  132 (353)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCH-HHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccCh-HHHHHHHHHHHHHHHcCCCCcEEE
Confidence            344566667788999999999999999999863      2458999999765432 235689999999999966 89999


Q ss_pred             EEEEEEeC-CEEEEEEEecCCCCHhhhhC
Q 040888          468 LVGFCSEQ-GHNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       468 l~g~~~~~-~~~~lv~ey~~~GsL~~~L~  495 (495)
                      ++|+|.+. +..++|||||++|+|.++|+
T Consensus       133 l~g~~~~~~~~~~iV~Ey~~~G~L~~~L~  161 (353)
T 4ase_A          133 LLGACTKPGGPLMVIVEFCKFGNLSTYLR  161 (353)
T ss_dssp             EEEEECCTTSCCEEEEECCTTEEHHHHHH
T ss_pred             EEEEEEecCCEEEEEEEcCCCCCHHHHHH
Confidence            99999764 56899999999999999873

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.52  E-value=9.2e-15  Score=143.53  Aligned_cols=85  Identities=24%  Similarity=0.284  Sum_probs=74.5

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .+.|...+.||+|+||+||+|+. .+|+.||||+++....       +.+|++++++++|||||++++++.+++..++||
T Consensus        57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-------~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivm  129 (336)
T 4g3f_A           57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-------RVEELVACAGLSSPRIVPLYGAVREGPWVNIFM  129 (336)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-------CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-------HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            34577788999999999999997 4699999999975432       246999999999999999999999999999999


Q ss_pred             EecCCCCHhhhhC
Q 040888          483 DYYRNGSLHEFLH  495 (495)
Q Consensus       483 ey~~~GsL~~~L~  495 (495)
                      |||++|+|.++|+
T Consensus       130 Ey~~gg~L~~~l~  142 (336)
T 4g3f_A          130 ELLEGGSLGQLIK  142 (336)
T ss_dssp             CCCTTCBHHHHHH
T ss_pred             eccCCCcHHHHHH
Confidence            9999999999873

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.51  E-value=1e-13  Score=123.11  Aligned_cols=106  Identities=22%  Similarity=0.264  Sum_probs=92.0

Q ss_pred             eEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccC
Q 040888           72 TEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSN  149 (495)
Q Consensus        72 ~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N  149 (495)
                      +.|++++|+|+. +|..+.  ++|++|+|++|+|++..|..+.  ++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus        12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            456667777775 565553  8899999999999988887775  89999999999999887778899999999999999


Q ss_pred             cCCCccchhhhCCCCCcEEEccCCcCCCcCc
Q 040888          150 QLNGQLSDMFQKNEKLETLDLSKNQLTGELP  180 (495)
Q Consensus       150 ~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p  180 (495)
                      +|++..+..|..+++|+.|+|++|.++...+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9998888889999999999999999986543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.48  E-value=2e-13  Score=121.65  Aligned_cols=104  Identities=19%  Similarity=0.252  Sum_probs=92.4

Q ss_pred             eEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccC
Q 040888           72 TEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSN  149 (495)
Q Consensus        72 ~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N  149 (495)
                      +.+++++|+|+ .+|..+.  ++|++|+|++|+|++..|..+.  ++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            67889999985 5676664  8999999999999988887775  89999999999999877777899999999999999


Q ss_pred             cCCCccchhhhCCCCCcEEEccCCcCCCc
Q 040888          150 QLNGQLSDMFQKNEKLETLDLSKNQLTGE  178 (495)
Q Consensus       150 ~l~g~~p~~~~~l~~L~~L~ls~N~l~g~  178 (495)
                      +|++..+..|..+++|++|+|++|.+...
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            99987777799999999999999999854

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=2.1e-16  Score=144.20  Aligned_cols=134  Identities=31%  Similarity=0.419  Sum_probs=117.4

Q ss_pred             cCCCCCCcEEECcCCCCCCCCCC------CCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhh
Q 040888           89 LTNLKSVSYLDVSNNNLKDSIPY------QLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQ  160 (495)
Q Consensus        89 ~~~l~~L~~L~Ls~N~l~g~~p~------~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~  160 (495)
                      +.....++.++|+.|.++|.+|.      .+.  ++|++|+|++|.+++ +| .+..+++|++|+|++|.++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            45567889999999999998886      443  799999999999997 77 8999999999999999999 6788888


Q ss_pred             CCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc--cccCCcc-CcEEEeecCCCcccCch
Q 040888          161 KNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI--NVLGKLP-LDELNVENNKFSGWVPE  227 (495)
Q Consensus       161 ~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~--~~~~~~~-L~~l~l~~N~l~g~~p~  227 (495)
                      .+++|+.|+|++|++++ +| .+..+++|+.|+|++|++++..  ..+..++ |+.|++++|.+++.+|.
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            88999999999999996 55 6889999999999999999744  4677777 99999999999988775

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.44  E-value=1e-14  Score=150.44  Aligned_cols=87  Identities=21%  Similarity=0.247  Sum_probs=39.9

Q ss_pred             CCCcEEECcCCcCCCC----cchhccCCCCCcEEEcccCcCCCccchhhhC-----CCCCcEEEccCCcCCCc----Ccc
Q 040888          115 PNLKHLDLSENQFSGT----VPYSISQMSELKYLNLGSNQLNGQLSDMFQK-----NEKLETLDLSKNQLTGE----LPR  181 (495)
Q Consensus       115 ~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~-----l~~L~~L~ls~N~l~g~----~p~  181 (495)
                      ++|++|+|++|.+++.    ++..+..+++|+.|+|++|.+++..+..+..     .++|+.|+|++|.+++.    +|.
T Consensus       256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  335 (461)
T 1z7x_W          256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS  335 (461)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence            3455555555544432    3444444455555555555544332222221     13455555555555433    334


Q ss_pred             cccCCCCCCEEeccCCcccc
Q 040888          182 SFASLSSLKKLYLQNNQFTG  201 (495)
Q Consensus       182 ~~~~l~~L~~L~l~~N~l~g  201 (495)
                      .+..+++|+.|+|++|.+++
T Consensus       336 ~l~~~~~L~~L~Ls~n~i~~  355 (461)
T 1z7x_W          336 VLAQNRFLLELQISNNRLED  355 (461)
T ss_dssp             HHHHCSSCCEEECCSSBCHH
T ss_pred             HHhhCCCccEEEccCCcccc
Confidence            44445555555555555543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.43  E-value=1.4e-14  Score=149.52  Aligned_cols=164  Identities=23%  Similarity=0.227  Sum_probs=128.8

Q ss_pred             CEeEEEcCCCCCcc----ccccccCCCCCCcEEECcCCCCCCCCCCCC-------CCCCcEEECcCCcCCCC----cchh
Q 040888           70 SVTEIKLSGLGLNG----QLGYQLTNLKSVSYLDVSNNNLKDSIPYQL-------PPNLKHLDLSENQFSGT----VPYS  134 (495)
Q Consensus        70 ~v~~l~L~~n~l~g----~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~-------~~~L~~L~Ls~N~l~g~----~p~~  134 (495)
                      +++.|+|++|.++.    .++..+..+++|++|+|++|.+++..+..+       .++|++|+|++|++++.    ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            69999999999984    678899999999999999999875433221       24799999999999874    4666


Q ss_pred             ccCCCCCcEEEcccCcCCCccchhhh-----CCCCCcEEEccCCcCCCc----CcccccCCCCCCEEeccCCcccccc--
Q 040888          135 ISQMSELKYLNLGSNQLNGQLSDMFQ-----KNEKLETLDLSKNQLTGE----LPRSFASLSSLKKLYLQNNQFTGSI--  203 (495)
Q Consensus       135 ~~~l~~L~~L~L~~N~l~g~~p~~~~-----~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~g~~--  203 (495)
                      +..+++|+.|+|++|.++...+..+.     ..++|+.|+|++|.+++.    ++..+..+++|+.|+|++|.+++..  
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            77889999999999999866554443     366899999999999874    6778888999999999999987642  


Q ss_pred             ---cc-cCCcc-CcEEEeecCCCccc----Cchhhhhcc
Q 040888          204 ---NV-LGKLP-LDELNVENNKFSGW----VPEELKDIA  233 (495)
Q Consensus       204 ---~~-~~~~~-L~~l~l~~N~l~g~----~p~~l~~l~  233 (495)
                         +. ....+ |+.|++++|.+++.    +|..+..++
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  284 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE  284 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence               11 22344 99999999999875    566655544

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.43  E-value=1.4e-13  Score=138.78  Aligned_cols=90  Identities=20%  Similarity=0.333  Sum_probs=75.7

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC------CE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ------GH  477 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~------~~  477 (495)
                      ++|...+.||+|+||+||+|.. .+|+.||||+++.........+.+.+|+++|++++|||||++++++...      +.
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence            4688899999999999999997 5699999999976543333356789999999999999999999998643      56


Q ss_pred             EEEEEEecCCCCHhhhhC
Q 040888          478 NILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L~  495 (495)
                      .++|||||+ |+|.++++
T Consensus       134 ~~ivmE~~~-g~L~~~i~  150 (398)
T 4b99_A          134 VYVVLDLME-SDLHQIIH  150 (398)
T ss_dssp             EEEEEECCS-EEHHHHHT
T ss_pred             EEEEEeCCC-CCHHHHHH
Confidence            899999996 78988763

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.41  E-value=3.3e-13  Score=142.75  Aligned_cols=89  Identities=24%  Similarity=0.429  Sum_probs=79.2

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .++|...+.||+|+||.||+|.. .+|+.||+|.+.....  ...+.+.+|+++|++++|||||++++++.+++..++||
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~--~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~  233 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHE--SDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIY  233 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH--HHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccch--hhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEE
Confidence            46788899999999999999998 4699999999976432  23567889999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      |||++|+|.++|
T Consensus       234 E~~~gg~L~~~i  245 (573)
T 3uto_A          234 EFMSGGELFEKV  245 (573)
T ss_dssp             ECCCCCBHHHHH
T ss_pred             eecCCCcHHHHH
Confidence            999999999876

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.41  E-value=1.5e-13  Score=134.99  Aligned_cols=102  Identities=34%  Similarity=0.626  Sum_probs=89.1

Q ss_pred             CCcccHHHHHHhccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEE
Q 040888          392 AAPFSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF  471 (495)
Q Consensus       392 ~~~~~~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~  471 (495)
                      ...+++.++..++++|...+.||+|+||.||+|...+|+.||||++....... ....|.+|++++.+++||||++++++
T Consensus        17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~e~~~l~~l~h~~iv~~~~~   95 (326)
T 3uim_A           17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQG-GELQFQTEVEMISMAVHRNLLRLRGF   95 (326)
T ss_dssp             CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC------CCCHHHHHHHGGGTCCCTTBCCCCEE
T ss_pred             cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCch-HHHHHHHHHHHHHhccCCCccceEEE
Confidence            34688899999999999999999999999999998889999999997654321 23468999999999999999999999


Q ss_pred             EEeCCEEEEEEEecCCCCHhhhh
Q 040888          472 CSEQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       472 ~~~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      |...+..++||||+++|+|.+++
T Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~l  118 (326)
T 3uim_A           96 CMTPTERLLVYPYMANGSVASCL  118 (326)
T ss_dssp             ECCSSCCEEEEECCTTCBHHHHH
T ss_pred             EecCCceEEEEEeccCCCHHHHH
Confidence            99999999999999999999876

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.40  E-value=4e-13  Score=133.62  Aligned_cols=165  Identities=17%  Similarity=0.131  Sum_probs=131.3

Q ss_pred             CCCEeEEEcCCCCCcccccc-ccCCCCCCcE-EECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcE
Q 040888           68 GSSVTEIKLSGLGLNGQLGY-QLTNLKSVSY-LDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKY  143 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~g~~~~-~~~~l~~L~~-L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~  143 (495)
                      ..+++.|+|++|.+.+.+|. .|.++++|.. ++++.|++....|..+.  ++|++|++++|++++..+..+....++..
T Consensus        53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~  132 (350)
T 4ay9_X           53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL  132 (350)
T ss_dssp             CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEE
T ss_pred             CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhh
Confidence            36899999999999887765 6889998775 67778999976666665  89999999999999877777888888999


Q ss_pred             EEccc-CcCCCccchhhhCCC-CCcEEEccCCcCCCcCcccccCCCCCCEEeccC-Ccccccc-cccCCcc-CcEEEeec
Q 040888          144 LNLGS-NQLNGQLSDMFQKNE-KLETLDLSKNQLTGELPRSFASLSSLKKLYLQN-NQFTGSI-NVLGKLP-LDELNVEN  218 (495)
Q Consensus       144 L~L~~-N~l~g~~p~~~~~l~-~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~-N~l~g~~-~~~~~~~-L~~l~l~~  218 (495)
                      |++.+ |++....+..|..+. .|+.|+|++|+|+ .+|.......+|+.|++++ |.++... ..+..++ |+.||+++
T Consensus       133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~  211 (350)
T 4ay9_X          133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR  211 (350)
T ss_dssp             EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred             hhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence            99976 567665556676664 6899999999999 5566555677899999986 5565544 4567777 99999999


Q ss_pred             CCCcccCchhhhhcc
Q 040888          219 NKFSGWVPEELKDIA  233 (495)
Q Consensus       219 N~l~g~~p~~l~~l~  233 (495)
                      |+|+...+..+.++.
T Consensus       212 N~l~~lp~~~~~~L~  226 (350)
T 4ay9_X          212 TRIHSLPSYGLENLK  226 (350)
T ss_dssp             SCCCCCCSSSCTTCC
T ss_pred             CCcCccChhhhccch
Confidence            999966555566655

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.40  E-value=1.9e-13  Score=134.13  Aligned_cols=98  Identities=36%  Similarity=0.650  Sum_probs=86.6

Q ss_pred             ccHHHHHHhccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe
Q 040888          395 FSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE  474 (495)
Q Consensus       395 ~~~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~  474 (495)
                      +.+.++..++++|...+.||+|+||.||+|+.++++.||||++.....  ...+.|.+|++++++++||||++++++|..
T Consensus        29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~  106 (321)
T 2qkw_B           29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESS--QGIEEFETEIETLSFCRHPHLVSLIGFCDE  106 (321)
T ss_dssp             -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCS--SHHHHHHHHHHGGGSCCCTTBCCEEEECCC
T ss_pred             ecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccCh--HHHHHHHHHHHHHHhCCCCCEeeEEEEEcC
Confidence            455666778899999999999999999999998899999999876432  235789999999999999999999999999


Q ss_pred             CCEEEEEEEecCCCCHhhhh
Q 040888          475 QGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       475 ~~~~~lv~ey~~~GsL~~~L  494 (495)
                      .+..++||||+++|+|.+++
T Consensus       107 ~~~~~lv~e~~~~~~L~~~l  126 (321)
T 2qkw_B          107 RNEMILIYKYMENGNLKRHL  126 (321)
T ss_dssp             TTCCEEEEECCTTCBTGGGS
T ss_pred             CCeEEEEEEcCCCCcHHHHH
Confidence            99999999999999999876

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.40  E-value=8.5e-13  Score=130.97  Aligned_cols=85  Identities=25%  Similarity=0.294  Sum_probs=55.9

Q ss_pred             CCcEEECcC-CcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEec
Q 040888          116 NLKHLDLSE-NQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYL  194 (495)
Q Consensus       116 ~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  194 (495)
                      +|+.|+|++ |+|++..|..|.+|++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..++ |+.|+|
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l  110 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL  110 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence            344444443 455545556677777777777777777777777777777777777777777755555555554 777777


Q ss_pred             cCCcccc
Q 040888          195 QNNQFTG  201 (495)
Q Consensus       195 ~~N~l~g  201 (495)
                      ++|.|..
T Consensus       111 ~~N~~~c  117 (347)
T 2ifg_A          111 SGNPLHC  117 (347)
T ss_dssp             CSSCCCC
T ss_pred             eCCCccC
Confidence            7777653

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.39  E-value=1e-12  Score=129.02  Aligned_cols=101  Identities=19%  Similarity=0.248  Sum_probs=86.5

Q ss_pred             CcccHHHHHHhccC----------CcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCC
Q 040888          393 APFSMADLLTATAN----------FATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR  461 (495)
Q Consensus       393 ~~~~~~~~~~~t~~----------f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~  461 (495)
                      ..++++++..+++.          |...+.||+|+||.||+|... +|+.||||++.....  ...+.+.+|++++.+++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~  100 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQ--QRRELLFNEVVIMRDYQ  100 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC--CSHHHHHHHHHHHTTCC
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccch--hHHHHHHHHHHHHHhCC
Confidence            45788998888865          566678999999999999985 699999999975432  23567999999999999


Q ss_pred             CCCcceEEEEEEeCCEEEEEEEecCCCCHhhhhC
Q 040888          462 HTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       462 H~niv~l~g~~~~~~~~~lv~ey~~~GsL~~~L~  495 (495)
                      ||||++++++|...+..++||||+++|+|.++++
T Consensus       101 h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~  134 (321)
T 2c30_A          101 HFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVS  134 (321)
T ss_dssp             CTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHT
T ss_pred             CCCcceEEEEEEECCEEEEEEecCCCCCHHHHHH
Confidence            9999999999999999999999999999998763

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.38  E-value=7.9e-13  Score=131.76  Aligned_cols=92  Identities=17%  Similarity=0.270  Sum_probs=78.6

Q ss_pred             HHHhccCCcccceeccCCceEEEEEEcC----CCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEe
Q 040888          400 LLTATANFATGRLLGEGTIGRVYRAKYP----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSE  474 (495)
Q Consensus       400 ~~~~t~~f~~~~~iG~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~  474 (495)
                      +....+.|...+.||+|+||+||+|+.+    .++.||||++....    ....+.+|+++|.++ +|||||++++++..
T Consensus        16 ~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~----~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~   91 (361)
T 4f9c_A           16 VPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS----HPIRIAAELQCLTVAGGQDNVMGVKYCFRK   91 (361)
T ss_dssp             SGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS----CHHHHHHHHHHHHHTCSBTTBCCCSEEEEE
T ss_pred             cCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc----CHHHHHHHHHHHHHhcCCCCCceEEEEEEE
Confidence            3345678999999999999999999752    46789999986542    245688999999998 69999999999999


Q ss_pred             CCEEEEEEEecCCCCHhhhhC
Q 040888          475 QGHNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       475 ~~~~~lv~ey~~~GsL~~~L~  495 (495)
                      .+..++|||||++|+|.++++
T Consensus        92 ~~~~~lvmE~~~g~~L~~~~~  112 (361)
T 4f9c_A           92 NDHVVIAMPYLEHESFLDILN  112 (361)
T ss_dssp             TTEEEEEEECCCCCCHHHHHT
T ss_pred             CCEEEEEEeCCCcccHHHHHc
Confidence            999999999999999998763

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.37  E-value=1.7e-12  Score=126.36  Aligned_cols=102  Identities=31%  Similarity=0.512  Sum_probs=89.0

Q ss_pred             CCcccHHHHHHhccCCccc------ceeccCCceEEEEEEcCCCCEEEEEEecCccc--ccccHHHHHHHHHHHhcCCCC
Q 040888          392 AAPFSMADLLTATANFATG------RLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHF--QRANSESFSEIVQNISRIRHT  463 (495)
Q Consensus       392 ~~~~~~~~~~~~t~~f~~~------~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~--~~~~~~~f~~e~~~l~~l~H~  463 (495)
                      ...|++.++..++++|+..      +.||+|+||.||+|.. +++.||||++.....  .....+.|.+|++++.+++||
T Consensus        12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~   90 (307)
T 2nru_A           12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHE   90 (307)
T ss_dssp             CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCT
T ss_pred             CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCC
Confidence            3568999999999999987      8999999999999998 688999999875421  122356799999999999999


Q ss_pred             CcceEEEEEEeCCEEEEEEEecCCCCHhhhh
Q 040888          464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       464 niv~l~g~~~~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      ||+++++++...+..++||||+++|+|.+++
T Consensus        91 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l  121 (307)
T 2nru_A           91 NLVELLGFSSDGDDLCLVYVYMPNGSLLDRL  121 (307)
T ss_dssp             TBCCEEEEECSSSSCEEEEECCTTCBHHHHH
T ss_pred             CeEEEEEEEecCCceEEEEEecCCCcHHHHH
Confidence            9999999999988999999999999998875

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.37  E-value=1.2e-12  Score=129.86  Aligned_cols=105  Identities=18%  Similarity=0.198  Sum_probs=94.0

Q ss_pred             EEECcCC-cCCCCcchhccCCCCCcEEEccc-CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccC
Q 040888          119 HLDLSEN-QFSGTVPYSISQMSELKYLNLGS-NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQN  196 (495)
Q Consensus       119 ~L~Ls~N-~l~g~~p~~~~~l~~L~~L~L~~-N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~  196 (495)
                      .++++++ +|+ .+|. +..+++|+.|+|++ |+|++..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4677777 787 4787 99999999999996 999999889999999999999999999999999999999999999999


Q ss_pred             Ccccccc-cccCCccCcEEEeecCCCcccC
Q 040888          197 NQFTGSI-NVLGKLPLDELNVENNKFSGWV  225 (495)
Q Consensus       197 N~l~g~~-~~~~~~~L~~l~l~~N~l~g~~  225 (495)
                      |+|++.+ ..+..++|+.|+|++|.|...-
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLHCSC  119 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred             CccceeCHHHcccCCceEEEeeCCCccCCC
Confidence            9999887 4556667999999999998643

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.35  E-value=1.3e-12  Score=128.78  Aligned_cols=92  Identities=22%  Similarity=0.393  Sum_probs=81.1

Q ss_pred             hccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      ..++|...+.||+|+||.||+|.. .+|+.||||++..........+.+.+|++++++++||||+++++++...+..++|
T Consensus        13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv   92 (328)
T 3fe3_A           13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI   92 (328)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence            356788899999999999999997 5799999999976543333456789999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+++|+|.+++
T Consensus        93 ~e~~~~~~L~~~l  105 (328)
T 3fe3_A           93 MEYASGGEVFDYL  105 (328)
T ss_dssp             ECCCTTCBHHHHH
T ss_pred             EECCCCCcHHHHH
Confidence            9999999999876

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.34  E-value=3.4e-14  Score=142.34  Aligned_cols=163  Identities=18%  Similarity=0.216  Sum_probs=124.0

Q ss_pred             CCEeEEEcCCCCCcccccccc----C-CCCCCcEEECcCCCCCCCCCCCCC---CCCcEEECcCCcCCCCcchhc-----
Q 040888           69 SSVTEIKLSGLGLNGQLGYQL----T-NLKSVSYLDVSNNNLKDSIPYQLP---PNLKHLDLSENQFSGTVPYSI-----  135 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~----~-~l~~L~~L~Ls~N~l~g~~p~~~~---~~L~~L~Ls~N~l~g~~p~~~-----  135 (495)
                      ..++.|+|++|.++......+    . +.++|+.|||++|.++......+.   ++|+.|+|++|.|+......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            579999999999987544333    3 237999999999998753332232   689999999999986544444     


Q ss_pred             cCCCCCcEEEcccCcCCC----ccchhhhCCCCCcEEEccCCcCCCc----CcccccCCCCCCEEeccCCcccccc----
Q 040888          136 SQMSELKYLNLGSNQLNG----QLSDMFQKNEKLETLDLSKNQLTGE----LPRSFASLSSLKKLYLQNNQFTGSI----  203 (495)
Q Consensus       136 ~~l~~L~~L~L~~N~l~g----~~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~g~~----  203 (495)
                      ...++|+.|+|++|.|+.    .++..+..+++|++|+|++|.|+..    ++..+...++|+.|+|++|.++...    
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            357899999999999975    3556668899999999999999853    3566778889999999999998532    


Q ss_pred             -cccCCcc-CcEEEeecCCCcccCchhhhh
Q 040888          204 -NVLGKLP-LDELNVENNKFSGWVPEELKD  231 (495)
Q Consensus       204 -~~~~~~~-L~~l~l~~N~l~g~~p~~l~~  231 (495)
                       ..+...+ |+.|+|++|.++..-...+..
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             HHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence             2232233 999999999998655555544

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.32  E-value=1.9e-12  Score=137.00  Aligned_cols=91  Identities=22%  Similarity=0.318  Sum_probs=75.1

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHH---HHHHHHHhcCCCCCcceEEEEEEeCCEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESF---SEIVQNISRIRHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f---~~e~~~l~~l~H~niv~l~g~~~~~~~~  478 (495)
                      .++|...++||+|+||+||+|+.. +|+.||||++.+..... ......   ..++++++.++|||||++++++.+.+..
T Consensus       188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l  267 (689)
T 3v5w_A          188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL  267 (689)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence            467999999999999999999984 69999999997543211 112223   3446778889999999999999999999


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      |+|||||++|+|.++|
T Consensus       268 ylVmEy~~GGdL~~~l  283 (689)
T 3v5w_A          268 SFILDLMNGGDLHYHL  283 (689)
T ss_dssp             EEEECCCCSCBHHHHH
T ss_pred             EEEEecCCCCcHHHHH
Confidence            9999999999999886

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.32  E-value=1.1e-12  Score=128.01  Aligned_cols=92  Identities=26%  Similarity=0.448  Sum_probs=80.1

Q ss_pred             HhccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          402 TATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       402 ~~t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      ...++|...+.||+|+||.||+|+. .|+.||||++..........++|.+|++++.+++||||+++++++...+..++|
T Consensus        34 i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  112 (309)
T 3p86_A           34 IPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIV  112 (309)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEE
T ss_pred             CChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEE
Confidence            3456788889999999999999987 678899999976544333456799999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+++|+|.+++
T Consensus       113 ~e~~~~~~L~~~l  125 (309)
T 3p86_A          113 TEYLSRGSLYRLL  125 (309)
T ss_dssp             EECCTTCBHHHHH
T ss_pred             EecCCCCcHHHHH
Confidence            9999999999876

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.32  E-value=3.9e-12  Score=124.00  Aligned_cols=88  Identities=19%  Similarity=0.448  Sum_probs=77.6

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||+|... ++..||+|++....  ....+.|.+|++++.+++||||++++++|..++..++|||
T Consensus        10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   87 (310)
T 3s95_A           10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFD--EETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITE   87 (310)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCC--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCC--HHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEE
Confidence            45777899999999999999984 68999999986532  2335789999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        88 ~~~~~~L~~~l   98 (310)
T 3s95_A           88 YIKGGTLRGII   98 (310)
T ss_dssp             CCTTCBHHHHH
T ss_pred             ecCCCcHHHHH
Confidence            99999999876

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.31  E-value=9.9e-13  Score=134.56  Aligned_cols=99  Identities=23%  Similarity=0.342  Sum_probs=84.2

Q ss_pred             cHHHHHHhccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEE
Q 040888          396 SMADLLTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCS  473 (495)
Q Consensus       396 ~~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~  473 (495)
                      .+.++...+++|...++||+|+||+||+|+.. +++.||||++...... ....+.+.+|+.++..++|||||+++++|.
T Consensus        65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  144 (437)
T 4aw2_A           65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ  144 (437)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence            45666677889999999999999999999985 4889999999753221 112334889999999999999999999999


Q ss_pred             eCCEEEEEEEecCCCCHhhhh
Q 040888          474 EQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       474 ~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      +.+..++|||||++|+|.++|
T Consensus       145 ~~~~~~lV~Ey~~gg~L~~~l  165 (437)
T 4aw2_A          145 DDNNLYLVMDYYVGGDLLTLL  165 (437)
T ss_dssp             CSSEEEEEECCCTTCBHHHHH
T ss_pred             eCCEEEEEEecCCCCcHHHHH
Confidence            999999999999999999886

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.31  E-value=3.8e-12  Score=122.81  Aligned_cols=91  Identities=14%  Similarity=0.189  Sum_probs=79.0

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      +.|...+.||+|+||.||+|... +++.||||.+...... ....+.|.+|++.+.+++||||+++++++..++..++||
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  110 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA  110 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence            45777899999999999999985 4899999999765332 123467999999999999999999999999999999999


Q ss_pred             EecCCCCHhhhhC
Q 040888          483 DYYRNGSLHEFLH  495 (495)
Q Consensus       483 ey~~~GsL~~~L~  495 (495)
                      ||+++|+|.++++
T Consensus       111 e~~~g~~L~~~l~  123 (286)
T 3uqc_A          111 EWIRGGSLQEVAD  123 (286)
T ss_dssp             ECCCEEEHHHHHT
T ss_pred             EecCCCCHHHHHh
Confidence            9999999998863

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.30  E-value=7.9e-12  Score=121.20  Aligned_cols=89  Identities=17%  Similarity=0.316  Sum_probs=78.6

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .++|...+.||+|+||.||+|.. .+++.||||++.....  ...+.+.+|+.++.+++|||||++++++...+..++||
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   96 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ--PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM   96 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGC--SCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccc--cHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEE
Confidence            35688889999999999999997 5689999999875432  23567899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        97 e~~~~~~L~~~~  108 (297)
T 3fxz_A           97 EYLAGGSLTDVV  108 (297)
T ss_dssp             ECCTTCBHHHHH
T ss_pred             ECCCCCCHHHHH
Confidence            999999999875

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.30  E-value=1.9e-12  Score=129.93  Aligned_cols=89  Identities=22%  Similarity=0.435  Sum_probs=77.0

Q ss_pred             cCCcccceeccCCceEEEEEEcC----CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~l  480 (495)
                      ++|...+.||+|+||.||+|+..    ++..||||+++.... ....++|.+|++++++++|||||+++++|...+..++
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  123 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYT-EKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI  123 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCC-HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccC-HHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence            46888899999999999999874    477899999976432 2235689999999999999999999999999889999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+++|+|.+++
T Consensus       124 v~e~~~~~sL~~~l  137 (373)
T 2qol_A          124 VTEYMENGSLDSFL  137 (373)
T ss_dssp             EEECCTTCBHHHHH
T ss_pred             EEeCCCCCcHHHHH
Confidence            99999999999886

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.30  E-value=4.6e-12  Score=120.79  Aligned_cols=87  Identities=23%  Similarity=0.489  Sum_probs=78.1

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      ++|...+.||+|+||.||+|...+++.||+|++.....   ..+++.+|++++.+++||||+++++++...+..++||||
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   86 (269)
T 4hcu_A           10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM---SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEF   86 (269)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB---CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred             hhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc---CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEe
Confidence            45677899999999999999998888999999976532   246799999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        87 ~~~~~L~~~l   96 (269)
T 4hcu_A           87 MEHGCLSDYL   96 (269)
T ss_dssp             CTTCBHHHHH
T ss_pred             CCCCcHHHHH
Confidence            9999999876

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.29  E-value=4.7e-12  Score=124.28  Aligned_cols=71  Identities=23%  Similarity=0.336  Sum_probs=59.1

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG  476 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~  476 (495)
                      ++|...+.||+|+||.||+|+.. +|+.||||++..... ....+.+.+|++++++++|||||+++++|.+.+
T Consensus         6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~   77 (332)
T 3qd2_B            6 TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNR-ELAREKVMREVKALAKLEHPGIVRYFNAWLETP   77 (332)
T ss_dssp             HHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCST-TTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECC
T ss_pred             hcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCc-hhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEec
Confidence            46778899999999999999985 799999999975432 223578999999999999999999999986643

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.29  E-value=1.6e-12  Score=131.94  Aligned_cols=98  Identities=18%  Similarity=0.305  Sum_probs=83.1

Q ss_pred             HHHHHHhccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccc-ccccHHHHHHHHHHHhcCCCCCcceEEEEEEe
Q 040888          397 MADLLTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHF-QRANSESFSEIVQNISRIRHTNIAELVGFCSE  474 (495)
Q Consensus       397 ~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~  474 (495)
                      +.++....++|...+.||+|+||+||+|+.. +++.||+|++..... .....+.+.+|++++..++|||||+++++|.+
T Consensus        61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~  140 (410)
T 3v8s_A           61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  140 (410)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence            3555666788999999999999999999985 589999999975322 11223458899999999999999999999999


Q ss_pred             CCEEEEEEEecCCCCHhhhh
Q 040888          475 QGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       475 ~~~~~lv~ey~~~GsL~~~L  494 (495)
                      .+..++|||||++|+|.+++
T Consensus       141 ~~~~~lV~E~~~gg~L~~~l  160 (410)
T 3v8s_A          141 DRYLYMVMEYMPGGDLVNLM  160 (410)
T ss_dssp             SSEEEEEECCCTTEEHHHHH
T ss_pred             CCEEEEEEeCCCCCcHHHHH
Confidence            99999999999999999876

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.29  E-value=4.1e-12  Score=126.90  Aligned_cols=91  Identities=22%  Similarity=0.359  Sum_probs=79.7

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .++|...+.||+|+||.||+|... +|+.||+|.+..........+.+.+|++++.+++|||||++++++...+..++||
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~  107 (362)
T 2bdw_A           28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF  107 (362)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            456888899999999999999974 6899999999765433333567899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus       108 e~~~gg~L~~~l  119 (362)
T 2bdw_A          108 DLVTGGELFEDI  119 (362)
T ss_dssp             CCCCSCBHHHHH
T ss_pred             ecCCCCCHHHHH
Confidence            999999998876

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.29  E-value=1.6e-12  Score=123.85  Aligned_cols=89  Identities=22%  Similarity=0.418  Sum_probs=77.5

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--CEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ--GHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|+.+ ++.||||++..........+.|.+|++++.+++||||++++++|...  +..++||
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (271)
T 3kmu_A           10 KQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT   88 (271)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred             HHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence            45777899999999999999985 88899999986544333456799999999999999999999999876  6789999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        89 e~~~~~~L~~~l  100 (271)
T 3kmu_A           89 HWMPYGSLYNVL  100 (271)
T ss_dssp             ECCTTCBHHHHH
T ss_pred             cccCCCcHHHHH
Confidence            999999999886

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.28  E-value=8.1e-12  Score=124.67  Aligned_cols=91  Identities=23%  Similarity=0.339  Sum_probs=79.0

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc----ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR----ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~----~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  478 (495)
                      .+.|...+.||+|+||.||+|... +|+.||||.+.......    ...+.+.+|++++.+++|||||++++++...+..
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~   90 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV   90 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence            356788899999999999999985 68999999997643211    1256799999999999999999999999999999


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++||||+++|+|.+++
T Consensus        91 ~lv~e~~~gg~L~~~l  106 (361)
T 2yab_A           91 VLILELVSGGELFDFL  106 (361)
T ss_dssp             EEEEECCCSCBHHHHH
T ss_pred             EEEEEcCCCCcHHHHH
Confidence            9999999999999886

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.28  E-value=3e-12  Score=131.91  Aligned_cols=93  Identities=22%  Similarity=0.402  Sum_probs=80.5

Q ss_pred             HHHHhccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEE
Q 040888          399 DLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       399 ~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  478 (495)
                      +++...++|...+.||+|+||.||+|.+.++..||||+++....   ..+.|.+|+++|.+++|||||+++++|. .+..
T Consensus       182 ~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~  257 (454)
T 1qcf_A          182 AWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSM---SVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPI  257 (454)
T ss_dssp             CSBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSB---CHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSC
T ss_pred             ceeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCc---cHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCcc
Confidence            34445677888999999999999999998888999999976432   3678999999999999999999999986 5678


Q ss_pred             EEEEEecCCCCHhhhhC
Q 040888          479 ILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L~  495 (495)
                      ++|||||++|+|.++|+
T Consensus       258 ~lv~e~~~~g~L~~~l~  274 (454)
T 1qcf_A          258 YIITEFMAKGSLLDFLK  274 (454)
T ss_dssp             EEEECCCTTCBHHHHHH
T ss_pred             EEEEeecCCCcHHHHHH
Confidence            99999999999999863

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.28  E-value=2.2e-12  Score=130.94  Aligned_cols=100  Identities=20%  Similarity=0.318  Sum_probs=84.8

Q ss_pred             ccHHHHHHhccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccc-ccccHHHHHHHHHHHhcCCCCCcceEEEEE
Q 040888          395 FSMADLLTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHF-QRANSESFSEIVQNISRIRHTNIAELVGFC  472 (495)
Q Consensus       395 ~~~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~  472 (495)
                      +.++++....++|...+.||+|+||+||+++.. +|+.||||++..... .....+.+.+|.+++.+++|||||++++++
T Consensus        51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~  130 (412)
T 2vd5_A           51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF  130 (412)
T ss_dssp             HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred             hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE
Confidence            345566667889999999999999999999984 699999999975322 112234588999999999999999999999


Q ss_pred             EeCCEEEEEEEecCCCCHhhhh
Q 040888          473 SEQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       473 ~~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      .+.+..++|||||++|+|.+++
T Consensus       131 ~~~~~~~lVmE~~~gg~L~~~l  152 (412)
T 2vd5_A          131 QDENYLYLVMEYYVGGDLLTLL  152 (412)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHH
T ss_pred             eeCCEEEEEEcCCCCCcHHHHH
Confidence            9999999999999999999886

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.27  E-value=7.8e-12  Score=126.05  Aligned_cols=90  Identities=14%  Similarity=0.247  Sum_probs=79.5

Q ss_pred             cCCcccceeccC--CceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          405 ANFATGRLLGEG--TIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       405 ~~f~~~~~iG~G--~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      ++|...+.||+|  +||.||+|+.. +|+.||||++..........+.+.+|++++++++|||||++++++...+..++|
T Consensus        25 ~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv  104 (389)
T 3gni_B           25 GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVV  104 (389)
T ss_dssp             GGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEEE
Confidence            467778999999  99999999985 699999999976544333456788999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      ||||++|+|.+++
T Consensus       105 ~e~~~~~~L~~~l  117 (389)
T 3gni_B          105 TSFMAYGSAKDLI  117 (389)
T ss_dssp             EECCTTCBHHHHH
T ss_pred             EEccCCCCHHHHH
Confidence            9999999999876

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.27  E-value=6.4e-12  Score=124.93  Aligned_cols=90  Identities=20%  Similarity=0.356  Sum_probs=77.1

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccc---cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQ---RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~l  480 (495)
                      +.|...+.||+|+||.||+|.. .+|+.||||++......   ....+.+.+|++++.+++|||||++++++..++..++
T Consensus        24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l  103 (351)
T 3c0i_A           24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM  103 (351)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence            3577889999999999999987 46899999998643221   1135679999999999999999999999999999999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+++|+|.+++
T Consensus       104 v~e~~~g~~L~~~l  117 (351)
T 3c0i_A          104 VFEFMDGADLCFEI  117 (351)
T ss_dssp             EEECCSSCBHHHHH
T ss_pred             EEeCCCCCCHHHHH
Confidence            99999999997764

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.27  E-value=5.9e-12  Score=124.57  Aligned_cols=94  Identities=20%  Similarity=0.310  Sum_probs=80.5

Q ss_pred             HHhccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccc---ccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC
Q 040888          401 LTATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHF---QRANSESFSEIVQNISRIRHTNIAELVGFCSEQG  476 (495)
Q Consensus       401 ~~~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~  476 (495)
                      ....++|...+.||+|+||.||+|.. .++..||+|++.....   .....+.+.+|++++.+++|||||+++++|...+
T Consensus        22 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~  101 (345)
T 3hko_A           22 LELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQ  101 (345)
T ss_dssp             HHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred             hhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCC
Confidence            44566788999999999999999997 4688999999865422   1233578999999999999999999999999999


Q ss_pred             EEEEEEEecCCCCHhhhh
Q 040888          477 HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L  494 (495)
                      ..++||||+++|+|.+++
T Consensus       102 ~~~lv~e~~~gg~L~~~l  119 (345)
T 3hko_A          102 YICLVMELCHGGHLLDKL  119 (345)
T ss_dssp             EEEEEEECCCSCBHHHHE
T ss_pred             eEEEEEeCCCCCcHHHHH
Confidence            999999999999999876

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.26  E-value=2.5e-12  Score=129.25  Aligned_cols=90  Identities=21%  Similarity=0.462  Sum_probs=78.0

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .++|...+.||+|+||.||+|... +++.||||.+..... ....++|.+|++++.+++|||||+++++|...+..++||
T Consensus       113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  191 (377)
T 3cbl_A          113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLP-PDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVM  191 (377)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSC-HHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCC-HHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEE
Confidence            456778899999999999999985 689999999875421 222456899999999999999999999999888999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      |||++|+|.+++
T Consensus       192 e~~~~g~L~~~l  203 (377)
T 3cbl_A          192 ELVQGGDFLTFL  203 (377)
T ss_dssp             ECCTTCBHHHHH
T ss_pred             EcCCCCCHHHHH
Confidence            999999999876

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.26  E-value=4.4e-12  Score=127.07  Aligned_cols=90  Identities=28%  Similarity=0.517  Sum_probs=77.0

Q ss_pred             ccCCcccceeccCCceEEEEEEc--------CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEe
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY--------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSE  474 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~--------~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~  474 (495)
                      .++|...+.||+|+||.||+|+.        .++..||||++..... ....+.+.+|++++.++ +|||||+++++|..
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~  158 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDAT-EKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ  158 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCB-HHHHHHHHHHHHHHHHSCCCTTBCCEEEEECS
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcC-HHHHHHHHHHHHHHHHhcCCCCEeeEEEEEcc
Confidence            35677889999999999999985        2356799999976532 22356799999999999 89999999999999


Q ss_pred             CCEEEEEEEecCCCCHhhhh
Q 040888          475 QGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       475 ~~~~~lv~ey~~~GsL~~~L  494 (495)
                      .+..++||||+++|+|.+++
T Consensus       159 ~~~~~lv~e~~~~g~L~~~l  178 (370)
T 2psq_A          159 DGPLYVIVEYASKGNLREYL  178 (370)
T ss_dssp             SSSCEEEEECCTTCBHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHH
Confidence            99999999999999999886

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.26  E-value=1.3e-11  Score=121.37  Aligned_cols=91  Identities=25%  Similarity=0.379  Sum_probs=78.4

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc----ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR----ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~----~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      +.|...+.||+|+||.||+|... +|+.||||.+.......    ...+.+.+|++++.+++|||||++++++...+..+
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   90 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   90 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            35777899999999999999984 68999999997543211    13567999999999999999999999999999999


Q ss_pred             EEEEecCCCCHhhhhC
Q 040888          480 LIYDYYRNGSLHEFLH  495 (495)
Q Consensus       480 lv~ey~~~GsL~~~L~  495 (495)
                      +||||+++|+|.++++
T Consensus        91 lv~e~~~~~~L~~~l~  106 (326)
T 2y0a_A           91 LILELVAGGELFDFLA  106 (326)
T ss_dssp             EEEECCCSCBHHHHHT
T ss_pred             EEEEcCCCCCHHHHHH
Confidence            9999999999998863

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.25  E-value=4.5e-12  Score=130.56  Aligned_cols=91  Identities=23%  Similarity=0.442  Sum_probs=78.9

Q ss_pred             HHhccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEE
Q 040888          401 LTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       401 ~~~t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~l  480 (495)
                      +...++|...+.||+|+||.||+|.+.++..||||++.....   ..++|.+|+++|.+++|||||+++++|.. +..++
T Consensus       180 ~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~i  255 (452)
T 1fmk_A          180 EIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYI  255 (452)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS---CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEE
T ss_pred             ccChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC---CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEE
Confidence            344567888899999999999999998888899999976432   25689999999999999999999999876 66899


Q ss_pred             EEEecCCCCHhhhhC
Q 040888          481 IYDYYRNGSLHEFLH  495 (495)
Q Consensus       481 v~ey~~~GsL~~~L~  495 (495)
                      |||||++|+|.++|+
T Consensus       256 v~e~~~~gsL~~~l~  270 (452)
T 1fmk_A          256 VTEYMSKGSLLDFLK  270 (452)
T ss_dssp             EECCCTTCBHHHHHS
T ss_pred             EehhhcCCCHHHHHH
Confidence            999999999999874

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.25  E-value=8.6e-12  Score=118.75  Aligned_cols=88  Identities=24%  Similarity=0.439  Sum_probs=78.3

Q ss_pred             ccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      .++|...+.||+|+||.||+|...++..||||++.....   ..+++.+|++++.+++||||++++++|...+..++|||
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   83 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM---SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTE   83 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB---CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred             hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC---cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEE
Confidence            346777899999999999999998888999999976432   25679999999999999999999999999889999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        84 ~~~~~~L~~~l   94 (268)
T 3sxs_A           84 YISNGCLLNYL   94 (268)
T ss_dssp             CCTTCBHHHHH
T ss_pred             ccCCCcHHHHH
Confidence            99999999876

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.25  E-value=1.4e-11  Score=120.93  Aligned_cols=89  Identities=17%  Similarity=0.237  Sum_probs=78.0

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .++|...+.||+|+||.||+|... +++.||+|.+....   ...+.+.+|++++.+++||||+++++++...+..++||
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~---~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~   80 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG---TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIF   80 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT---HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc---ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEE
Confidence            356788899999999999999985 58899999987542   23457889999999999999999999999999999999


Q ss_pred             EecCCCCHhhhhC
Q 040888          483 DYYRNGSLHEFLH  495 (495)
Q Consensus       483 ey~~~GsL~~~L~  495 (495)
                      ||+++|+|.++++
T Consensus        81 e~~~g~~L~~~l~   93 (321)
T 1tki_A           81 EFISGLDIFERIN   93 (321)
T ss_dssp             CCCCCCBHHHHHT
T ss_pred             EeCCCCCHHHHHH
Confidence            9999999998763

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.25  E-value=1.2e-11  Score=118.67  Aligned_cols=91  Identities=20%  Similarity=0.366  Sum_probs=79.6

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv  481 (495)
                      .++|...+.||+|+||.||+|... +++.||||++...........++.+|+..+.++ +||||+++++++...+..++|
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv   89 (289)
T 1x8b_A           10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ   89 (289)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred             cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence            456888899999999999999985 699999999976533333456788999999999 999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+++|+|.+++
T Consensus        90 ~e~~~~~~L~~~l  102 (289)
T 1x8b_A           90 NEYCNGGSLADAI  102 (289)
T ss_dssp             EECCTTCBHHHHH
T ss_pred             EEecCCCcHHHHH
Confidence            9999999999876

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.25  E-value=1.1e-11  Score=122.51  Aligned_cols=90  Identities=20%  Similarity=0.301  Sum_probs=78.3

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccc-ccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHF-QRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||+||+|... +|+.||+|+++.... .....+.+.+|++++.+++||||+++++++...+..++||
T Consensus         5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~   84 (337)
T 1o6l_A            5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM   84 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence            56888899999999999999984 699999999975422 1223567899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        85 E~~~gg~L~~~l   96 (337)
T 1o6l_A           85 EYANGGELFFHL   96 (337)
T ss_dssp             ECCTTCBHHHHH
T ss_pred             eCCCCCcHHHHH
Confidence            999999998875

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.25  E-value=9.6e-12  Score=119.42  Aligned_cols=88  Identities=25%  Similarity=0.460  Sum_probs=75.8

Q ss_pred             ccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      .++|...+.||+|+||.||+|...++..||||++.....   ..+++.+|++++.+++||||++++++|...+..++|||
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   99 (283)
T 3gen_A           23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM---SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITE   99 (283)
T ss_dssp             GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB---CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEC
T ss_pred             HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC---CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEe
Confidence            456777899999999999999998888999999976543   25679999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus       100 ~~~~~~L~~~l  110 (283)
T 3gen_A          100 YMANGCLLNYL  110 (283)
T ss_dssp             CCTTCBHHHHH
T ss_pred             ccCCCcHHHHH
Confidence            99999999876

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.25  E-value=6.4e-12  Score=123.53  Aligned_cols=89  Identities=21%  Similarity=0.408  Sum_probs=76.5

Q ss_pred             cCCcccceeccCCceEEEEEEcC----CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~l  480 (495)
                      ++|...+.||+|+||.||+|...    .+..||||++..... ....+.|.+|++++.+++||||++++++|...+..++
T Consensus        49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  127 (325)
T 3kul_A           49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYT-ERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI  127 (325)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCC-HHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred             hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCC-HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence            45777899999999999999984    345699999976432 2235679999999999999999999999998888999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+++|+|.+++
T Consensus       128 v~e~~~~~~L~~~l  141 (325)
T 3kul_A          128 VTEYMENGSLDTFL  141 (325)
T ss_dssp             EEECCTTCBHHHHH
T ss_pred             EeeCCCCCcHHHHH
Confidence            99999999999886

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.25  E-value=7.4e-12  Score=122.99  Aligned_cols=89  Identities=22%  Similarity=0.325  Sum_probs=75.5

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||+|... +++.||||++...... ...+.+.+|+.++.+++|||||++++++...+..++|||
T Consensus         7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e   85 (323)
T 3tki_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV-DCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (323)
T ss_dssp             TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC--------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEccccc-chHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence            56888899999999999999975 6899999998654321 224568899999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        86 ~~~~~~L~~~l   96 (323)
T 3tki_A           86 YCSGGELFDRI   96 (323)
T ss_dssp             CCTTEEGGGGS
T ss_pred             cCCCCcHHHHH
Confidence            99999998876

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.24  E-value=1.6e-11  Score=118.83  Aligned_cols=90  Identities=23%  Similarity=0.338  Sum_probs=77.6

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|.. .+++.||+|++...... ....+.|.+|++.+.+++||||+++++++...+..++||
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   90 (294)
T 4eqm_A           11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVM   90 (294)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEE
Confidence            4577789999999999999997 46899999998654322 223467999999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        91 e~~~g~~L~~~l  102 (294)
T 4eqm_A           91 EYIEGPTLSEYI  102 (294)
T ss_dssp             ECCCSCBHHHHH
T ss_pred             eCCCCCCHHHHH
Confidence            999999999875

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.24  E-value=5.2e-12  Score=124.79  Aligned_cols=95  Identities=28%  Similarity=0.480  Sum_probs=81.1

Q ss_pred             HHHHhccCCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEE
Q 040888          399 DLLTATANFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC  472 (495)
Q Consensus       399 ~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~  472 (495)
                      .+....++|...+.||+|+||.||+|...      +++.||||.+..... ....+.|.+|++++.+++||||++++++|
T Consensus        41 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~~  119 (343)
T 1luf_A           41 SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS-ADMQADFQREAALMAEFDNPNIVKLLGVC  119 (343)
T ss_dssp             HTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCC-HHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             eeEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccC-HHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence            33445678899999999999999999874      347899999976432 22356799999999999999999999999


Q ss_pred             EeCCEEEEEEEecCCCCHhhhh
Q 040888          473 SEQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       473 ~~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      ...+..++||||+++|+|.+++
T Consensus       120 ~~~~~~~lv~e~~~~~~L~~~l  141 (343)
T 1luf_A          120 AVGKPMCLLFEYMAYGDLNEFL  141 (343)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHH
T ss_pred             ccCCceEEEEecCCCCcHHHHH
Confidence            9999999999999999999886

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.24  E-value=9.1e-12  Score=121.63  Aligned_cols=90  Identities=22%  Similarity=0.420  Sum_probs=74.6

Q ss_pred             ccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      .++|...+.||+|+||.||+|...+|+.||||++..........+.+.+|++++.+++|||||++++++..++..++|||
T Consensus        20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   99 (311)
T 3niz_A           20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE   99 (311)
T ss_dssp             SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred             HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence            35677889999999999999999889999999997654333335678999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++ +|.+++
T Consensus       100 ~~~~-~l~~~~  109 (311)
T 3niz_A          100 FMEK-DLKKVL  109 (311)
T ss_dssp             CCSE-EHHHHH
T ss_pred             CCCC-CHHHHH
Confidence            9984 776654

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.24  E-value=3.9e-12  Score=126.62  Aligned_cols=100  Identities=21%  Similarity=0.446  Sum_probs=82.9

Q ss_pred             ccHHHHHHhccCCcccceeccCCceEEEEEEc------CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcce
Q 040888          395 FSMADLLTATANFATGRLLGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAE  467 (495)
Q Consensus       395 ~~~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~  467 (495)
                      +...++....++|...+.||+|+||.||+|.+      .+++.||||++..... ....+.|.+|++++.++ +|||||+
T Consensus        12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~~hpniv~   90 (359)
T 3vhe_A           12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT-HSEHRALMSELKILIHIGHHLNVVN   90 (359)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC-HHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCC-HHHHHHHHHHHHHHHhhcCCcceee
Confidence            44566667788899999999999999999973      3467999999976432 22346799999999999 8999999


Q ss_pred             EEEEEEeCC-EEEEEEEecCCCCHhhhhC
Q 040888          468 LVGFCSEQG-HNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       468 l~g~~~~~~-~~~lv~ey~~~GsL~~~L~  495 (495)
                      ++++|...+ ..++||||+++|+|.++++
T Consensus        91 ~~~~~~~~~~~~~iv~e~~~~g~L~~~l~  119 (359)
T 3vhe_A           91 LLGACTKPGGPLMVIVEFCKFGNLSTYLR  119 (359)
T ss_dssp             EEEEECSTTSCCEEEEECCTTEEHHHHHH
T ss_pred             eeeeeecCCCceEEEEEecCCCcHHHHHH
Confidence            999998755 4889999999999998863

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.24  E-value=1.6e-11  Score=117.83  Aligned_cols=91  Identities=22%  Similarity=0.359  Sum_probs=79.1

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .++|...+.||+|+||.||+|... +++.||+|++..........+.+.+|++++.+++||||+++++++...+..++||
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   84 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   84 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence            357888899999999999999974 5899999999765443333567889999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        85 e~~~~~~l~~~~   96 (284)
T 3kk8_A           85 DLVTGGELFEDI   96 (284)
T ss_dssp             CCCCSCBHHHHH
T ss_pred             ecCCCCCHHHHH
Confidence            999999997764

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.23  E-value=5.2e-12  Score=131.54  Aligned_cols=89  Identities=24%  Similarity=0.506  Sum_probs=78.9

Q ss_pred             hccCCcccceeccCCceEEEEEEcCC-CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      ...+|...+.||+|+||.||+|.+.. +..||||.+.....   ..++|.+|+++|.+++|||||+++++|...+..++|
T Consensus       218 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv  294 (495)
T 1opk_A          218 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM---EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII  294 (495)
T ss_dssp             CGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS---CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred             CHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc---chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEE
Confidence            34567788999999999999999864 88999999976432   357899999999999999999999999998899999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      ||||++|+|.++|
T Consensus       295 ~E~~~~g~L~~~l  307 (495)
T 1opk_A          295 TEFMTYGNLLDYL  307 (495)
T ss_dssp             EECCTTCBHHHHH
T ss_pred             EEccCCCCHHHHH
Confidence            9999999999886

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.23  E-value=8.4e-12  Score=128.00  Aligned_cols=91  Identities=25%  Similarity=0.368  Sum_probs=77.6

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .++|...+.||+|+||.||+|.. .+|+.+|+|++..........+.+.+|++++++++|||||++++++..++..++||
T Consensus        10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~   89 (444)
T 3soa_A           10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIF   89 (444)
T ss_dssp             HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEE
Confidence            45688889999999999999987 46899999999765443333567899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        90 E~~~gg~L~~~i  101 (444)
T 3soa_A           90 DLVTGGELFEDI  101 (444)
T ss_dssp             CCCBCCBHHHHH
T ss_pred             EeCCCCCHHHHH
Confidence            999999998765

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.23  E-value=2e-11  Score=119.43  Aligned_cols=89  Identities=24%  Similarity=0.441  Sum_probs=76.1

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC--EEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG--HNILI  481 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~--~~~lv  481 (495)
                      +.|...+.||+|+||.||+|... +++.||||++...... ...+.+.+|++++.+++||||+++++++...+  ..++|
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv   87 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFL-RPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI   87 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGG-SCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEecccccc-chHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence            35677899999999999999985 5899999999754332 23567889999999999999999999998765  67999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+++|+|.+++
T Consensus        88 ~e~~~~~~L~~~l  100 (319)
T 4euu_A           88 MEFCPCGSLYTVL  100 (319)
T ss_dssp             EECCTTCBHHHHH
T ss_pred             EeCCCCCCHHHHH
Confidence            9999999999876

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.23  E-value=1.3e-11  Score=126.92  Aligned_cols=87  Identities=25%  Similarity=0.491  Sum_probs=76.5

Q ss_pred             hccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC-EEEEE
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG-HNILI  481 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~-~~~lv  481 (495)
                      ..++|...+.||+|+||.||+|.+. |+.||||+++...    ..+.|.+|+++|.+++|||||+++++|...+ ..++|
T Consensus       191 ~~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv  265 (450)
T 1k9a_A          191 NMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV  265 (450)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT----TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEE
T ss_pred             ChHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch----HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEE
Confidence            3456778899999999999999985 7799999997643    2568999999999999999999999998765 78999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      ||||++|+|.+++
T Consensus       266 ~e~~~~g~L~~~l  278 (450)
T 1k9a_A          266 TEYMAKGSLVDYL  278 (450)
T ss_dssp             EECCTTCBHHHHH
T ss_pred             EEecCCCcHHHHH
Confidence            9999999999886

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.23  E-value=6e-12  Score=132.35  Aligned_cols=92  Identities=23%  Similarity=0.435  Sum_probs=79.3

Q ss_pred             HHHhccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          400 LLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       400 ~~~~t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      ++...++|...+.||+|+||.||+|.+.++..||||++.....   ..++|.+|+++|.+++|||||+++++|.. +..+
T Consensus       262 ~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~  337 (535)
T 2h8h_A          262 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIY  337 (535)
T ss_dssp             SBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS---CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE
T ss_pred             eecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC---CHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccce
Confidence            3344567788899999999999999998888899999976532   25689999999999999999999999876 6689


Q ss_pred             EEEEecCCCCHhhhhC
Q 040888          480 LIYDYYRNGSLHEFLH  495 (495)
Q Consensus       480 lv~ey~~~GsL~~~L~  495 (495)
                      +|||||++|+|.++|+
T Consensus       338 lv~e~~~~gsL~~~l~  353 (535)
T 2h8h_A          338 IVTEYMSKGSLLDFLK  353 (535)
T ss_dssp             EEECCCTTEEHHHHHS
T ss_pred             EeeehhcCCcHHHHHh
Confidence            9999999999999874

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.23  E-value=1.9e-11  Score=117.63  Aligned_cols=89  Identities=19%  Similarity=0.300  Sum_probs=77.8

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      +.|...+.||+|+||.||+|.. .++..||+|++..... ....+.+.+|++++.+++||||+++++++...+..++|||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  100 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRS-QVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVME  100 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGC-CSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeecccc-chhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEE
Confidence            3577789999999999999997 4688999999976542 2235789999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus       101 ~~~~~~L~~~l  111 (285)
T 3is5_A          101 TCEGGELLERI  111 (285)
T ss_dssp             CCSCCBHHHHH
T ss_pred             eCCCCcHHHHH
Confidence            99999998875

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.23  E-value=1.3e-11  Score=123.73  Aligned_cols=85  Identities=21%  Similarity=0.421  Sum_probs=69.4

Q ss_pred             cccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecC
Q 040888          408 ATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYR  486 (495)
Q Consensus       408 ~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~  486 (495)
                      ...+.||+|+||.||+|.. .+|+.||+|++.....  ...+.|.+|++++.+++|||||+++++|...+..++||||++
T Consensus        92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~  169 (373)
T 2x4f_A           92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGM--KDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVD  169 (373)
T ss_dssp             EEEEECC-----CEEEEEETTTCCEEEEEEEECCSH--HHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred             ecceEEecCcCEEEEEEEEcCCCcEEEEEEEccccc--ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCC
Confidence            3357899999999999987 4699999999976432  235689999999999999999999999999999999999999


Q ss_pred             CCCHhhhh
Q 040888          487 NGSLHEFL  494 (495)
Q Consensus       487 ~GsL~~~L  494 (495)
                      +|+|.+++
T Consensus       170 ~~~L~~~l  177 (373)
T 2x4f_A          170 GGELFDRI  177 (373)
T ss_dssp             TCEEHHHH
T ss_pred             CCcHHHHH
Confidence            99998765

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.22  E-value=1.6e-11  Score=119.50  Aligned_cols=90  Identities=20%  Similarity=0.389  Sum_probs=77.6

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||+|... +|+.||||++..........+.+.+|++++.+++||||+++++++...+..++|||
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE   82 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence            46778899999999999999985 59999999987654333335678899999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        83 ~~~~~~l~~~~   93 (311)
T 4agu_A           83 YCDHTVLHELD   93 (311)
T ss_dssp             CCSEEHHHHHH
T ss_pred             eCCCchHHHHH
Confidence            99999887764

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.22  E-value=2.2e-11  Score=121.58  Aligned_cols=88  Identities=22%  Similarity=0.303  Sum_probs=77.7

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .++|...+.||+|+||.||++... +++.||||++.....   ..+.+.+|+.++++++|||||++++++...+..++||
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~   95 (361)
T 3uc3_A           19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA---IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIM   95 (361)
T ss_dssp             TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT---SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc---ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEE
Confidence            346778899999999999999985 689999999975432   2467889999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        96 e~~~~~~L~~~l  107 (361)
T 3uc3_A           96 EYASGGELYERI  107 (361)
T ss_dssp             ECCCSCBHHHHH
T ss_pred             EeCCCCCHHHHH
Confidence            999999998875

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.22  E-value=1.5e-11  Score=122.16  Aligned_cols=88  Identities=22%  Similarity=0.309  Sum_probs=71.7

Q ss_pred             hccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      ..+.|...+.||+|+||.||+|... +++.||||++....    ..+.+.+|++++.+++||||++++++|...+..++|
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv  126 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV----DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLV  126 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC--------------CHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch----hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEE
Confidence            3467888899999999999999985 58899999997542    245688999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+++|+|.+++
T Consensus       127 ~e~~~~~~L~~~l  139 (349)
T 2w4o_A          127 LELVTGGELFDRI  139 (349)
T ss_dssp             ECCCCSCBHHHHH
T ss_pred             EEeCCCCCHHHHH
Confidence            9999999998876

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.22  E-value=2.1e-11  Score=116.72  Aligned_cols=91  Identities=20%  Similarity=0.395  Sum_probs=77.8

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe--CCEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE--QGHNIL  480 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~--~~~~~l  480 (495)
                      .++|...+.||+|+||.||+|... +++.||+|.+..........+.+.+|++++.+++||||+++++++..  .+..++
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   84 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   84 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence            356778899999999999999984 68999999997654333345679999999999999999999999865  567899


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+++|+|.+++
T Consensus        85 v~e~~~~~~L~~~l   98 (279)
T 2w5a_A           85 VMEYCEGGDLASVI   98 (279)
T ss_dssp             EEECCTTEEHHHHH
T ss_pred             EEeCCCCCCHHHHH
Confidence            99999999999876

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.22  E-value=1.5e-11  Score=118.52  Aligned_cols=89  Identities=22%  Similarity=0.392  Sum_probs=76.9

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      ++|...+.||+|+||.||+|...+|+.||||++..........+.+.+|++++.+++||||+++++++...+..++||||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence            45777899999999999999998899999999976543333357789999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++ +|.+++
T Consensus        82 ~~~-~l~~~~   90 (288)
T 1ob3_A           82 LDQ-DLKKLL   90 (288)
T ss_dssp             CSE-EHHHHH
T ss_pred             cCC-CHHHHH
Confidence            985 887764

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.22  E-value=1.6e-11  Score=120.33  Aligned_cols=90  Identities=24%  Similarity=0.366  Sum_probs=78.2

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|+.. +|+.||+|++...... ....+.+.+|+.++..++|||||++++++.+.+..++||
T Consensus         6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~   85 (318)
T 1fot_A            6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   85 (318)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEE
Confidence            56788899999999999999984 6999999999754321 123567889999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        86 e~~~gg~L~~~l   97 (318)
T 1fot_A           86 DYIEGGELFSLL   97 (318)
T ss_dssp             CCCCSCBHHHHH
T ss_pred             eCCCCCCHHHHH
Confidence            999999999876

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.21  E-value=2.6e-11  Score=122.16  Aligned_cols=90  Identities=18%  Similarity=0.303  Sum_probs=78.6

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .+.|...+.||+|+||.||+|... +|+.||+|.+.....  .....+.+|++++.+++|||||++++++...+..++||
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~--~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~  127 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYP--LDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLIL  127 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH--HHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccch--hhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEE
Confidence            457888999999999999999984 689999999875432  22457899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhhC
Q 040888          483 DYYRNGSLHEFLH  495 (495)
Q Consensus       483 ey~~~GsL~~~L~  495 (495)
                      ||+++|+|.++++
T Consensus       128 E~~~gg~L~~~l~  140 (387)
T 1kob_A          128 EFLSGGELFDRIA  140 (387)
T ss_dssp             ECCCCCBHHHHTT
T ss_pred             EcCCCCcHHHHHH
Confidence            9999999998763

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.21  E-value=2.1e-11  Score=126.99  Aligned_cols=90  Identities=21%  Similarity=0.358  Sum_probs=73.8

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      +.|...+.||+|+||.||+|... ++..||||++..........+.+.+|++++++++|||||+++++|...+..++|||
T Consensus        37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  116 (494)
T 3lij_A           37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVME  116 (494)
T ss_dssp             HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence            45778899999999999999985 68899999997654333345789999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus       117 ~~~~g~L~~~~  127 (494)
T 3lij_A          117 CYKGGELFDEI  127 (494)
T ss_dssp             CCCSCBHHHHH
T ss_pred             cCCCCcHHHHH
Confidence            99999998765

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.21  E-value=1.5e-11  Score=121.04  Aligned_cols=90  Identities=23%  Similarity=0.404  Sum_probs=71.8

Q ss_pred             cCCcccceeccCCceEEEEEEc----CCCCEEEEEEecCcccc--cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY----PDGKVLAVKKIDSSHFQ--RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~----~~g~~vavK~l~~~~~~--~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  478 (495)
                      ++|...+.||+|+||.||++..    .+++.||+|++......  ......+.+|++++.+++|||||++++++...+..
T Consensus        17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~   96 (327)
T 3a62_A           17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKL   96 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCE
T ss_pred             HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEE
Confidence            4678889999999999999987    46899999999765321  12245688999999999999999999999999999


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++||||+++|+|.+++
T Consensus        97 ~lv~e~~~~~~L~~~l  112 (327)
T 3a62_A           97 YLILEYLSGGELFMQL  112 (327)
T ss_dssp             EEEEECCTTEEHHHHH
T ss_pred             EEEEeCCCCCcHHHHH
Confidence            9999999999998875

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.21  E-value=1.4e-11  Score=117.06  Aligned_cols=87  Identities=23%  Similarity=0.463  Sum_probs=77.9

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      ++|...+.||+|+||.||+|...+++.||+|.+.....   ..+.+.+|++++.+++||||+++++++..++..++||||
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (267)
T 3t9t_A            8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM---SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEF   84 (267)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB---CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECC
T ss_pred             hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC---CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeC
Confidence            45677899999999999999998888999999976532   246899999999999999999999999998899999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        85 ~~~~~L~~~~   94 (267)
T 3t9t_A           85 MEHGCLSDYL   94 (267)
T ss_dssp             CTTCBHHHHH
T ss_pred             CCCCcHHHHH
Confidence            9999999876

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.21  E-value=8.8e-12  Score=124.74  Aligned_cols=90  Identities=24%  Similarity=0.362  Sum_probs=76.8

Q ss_pred             ccCCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGH  477 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  477 (495)
                      .++|...+.||+|+||.||+|++.      ++..||||++..... ......|.+|+.++.+++|||||++++++...+.
T Consensus        70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~  148 (367)
T 3l9p_A           70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS-EQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP  148 (367)
T ss_dssp             GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccC-hhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCC
Confidence            356778899999999999999953      466899999975432 2235679999999999999999999999999888


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++||||+++|+|.+++
T Consensus       149 ~~lv~e~~~~g~L~~~l  165 (367)
T 3l9p_A          149 RFILLELMAGGDLKSFL  165 (367)
T ss_dssp             CEEEEECCTTEEHHHHH
T ss_pred             CEEEEEeCCCCCHHHHH
Confidence            99999999999999876

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.21  E-value=1.3e-11  Score=124.04  Aligned_cols=90  Identities=19%  Similarity=0.305  Sum_probs=78.1

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccc-ccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHF-QRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||++... +++.||+|.+..... .....+.+.+|++++.+++|||||+++++|...+..++||
T Consensus        15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~   94 (384)
T 4fr4_A           15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV   94 (384)
T ss_dssp             GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            46778899999999999999974 588999999975432 1223567899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        95 e~~~gg~L~~~l  106 (384)
T 4fr4_A           95 DLLLGGDLRYHL  106 (384)
T ss_dssp             CCCTTEEHHHHH
T ss_pred             ecCCCCcHHHHH
Confidence            999999998876

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.20  E-value=1.4e-11  Score=120.78  Aligned_cols=87  Identities=23%  Similarity=0.296  Sum_probs=73.4

Q ss_pred             ccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC----EEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG----HNI  479 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~----~~~  479 (495)
                      .++|...+.||+|+||.||+|+.. ++.||||++.....   ....+.+|+.++.+++|||||++++++....    ..+
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   98 (322)
T 3soc_A           23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDK---QSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLW   98 (322)
T ss_dssp             TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred             hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCch---HHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEE
Confidence            356778899999999999999885 78999999965432   2345677999999999999999999998744    468


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +||||+++|+|.+++
T Consensus        99 lv~e~~~~g~L~~~l  113 (322)
T 3soc_A           99 LITAFHEKGSLSDFL  113 (322)
T ss_dssp             EEEECCTTCBHHHHH
T ss_pred             EEEecCCCCCHHHHH
Confidence            999999999999886

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.20  E-value=2.8e-11  Score=118.41  Aligned_cols=89  Identities=18%  Similarity=0.381  Sum_probs=63.8

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .++|...+.||+|+||.||+|... +|+.||||++..... ....+.+.+|++++.+++|||||++++++..++..++||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   82 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSE-EGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVF   82 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCST-TCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccc-cccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEE
Confidence            456888899999999999999984 589999999975432 223467899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||++ |+|.+++
T Consensus        83 e~~~-~~L~~~l   93 (317)
T 2pmi_A           83 EFMD-NDLKKYM   93 (317)
T ss_dssp             ECCC-CBHHHHH
T ss_pred             EecC-CCHHHHH
Confidence            9998 6888765

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.20  E-value=1.1e-11  Score=121.43  Aligned_cols=94  Identities=28%  Similarity=0.517  Sum_probs=70.6

Q ss_pred             HHhccCCcccceeccCCceEEEEEEcCC-C---CEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC
Q 040888          401 LTATANFATGRLLGEGTIGRVYRAKYPD-G---KVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG  476 (495)
Q Consensus       401 ~~~t~~f~~~~~iG~G~~g~Vy~~~~~~-g---~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~  476 (495)
                      ....++|...+.||+|+||.||+|.... +   ..||||.+..........+.|.+|++++.+++||||+++++++...+
T Consensus        19 ~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   98 (323)
T 3qup_A           19 LIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSR   98 (323)
T ss_dssp             BCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-
T ss_pred             ccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccc
Confidence            3445678889999999999999999854 3   27999999765433334678999999999999999999999998876


Q ss_pred             EE------EEEEEecCCCCHhhhh
Q 040888          477 HN------ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~------~lv~ey~~~GsL~~~L  494 (495)
                      ..      ++|+||+++|+|.+++
T Consensus        99 ~~~~~~~~~~v~e~~~~~~L~~~l  122 (323)
T 3qup_A           99 AKGRLPIPMVILPFMKHGDLHAFL  122 (323)
T ss_dssp             ------CEEEEEECCTTCBHHHHH
T ss_pred             cccCCCccEEEEEeccCCcHHHHH
Confidence            55      8999999999999876

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.20  E-value=2.7e-11  Score=120.34  Aligned_cols=90  Identities=19%  Similarity=0.279  Sum_probs=78.5

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|+.. +|+.||||++...... ....+.+.+|++++.+++||||+++++++...+..++||
T Consensus        41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  120 (350)
T 1rdq_E           41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence            56888899999999999999985 6999999999754321 123567899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus       121 e~~~gg~L~~~l  132 (350)
T 1rdq_E          121 EYVAGGEMFSHL  132 (350)
T ss_dssp             ECCTTCBHHHHH
T ss_pred             cCCCCCcHHHHH
Confidence            999999999876

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.20  E-value=4e-11  Score=125.18  Aligned_cols=91  Identities=24%  Similarity=0.376  Sum_probs=75.3

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc-----------ccHHHHHHHHHHHhcCCCCCcceEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-----------ANSESFSEIVQNISRIRHTNIAELVGF  471 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-----------~~~~~f~~e~~~l~~l~H~niv~l~g~  471 (495)
                      .+.|...+.||+|+||.||+|... +++.||||++.......           ...+.+.+|++++.+++|||||+++++
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~  114 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV  114 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            467888999999999999999984 58899999997543211           234678999999999999999999999


Q ss_pred             EEeCCEEEEEEEecCCCCHhhhh
Q 040888          472 CSEQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       472 ~~~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      |...+..++||||+++|+|.+++
T Consensus       115 ~~~~~~~~lv~e~~~gg~L~~~l  137 (504)
T 3q5i_A          115 FEDKKYFYLVTEFYEGGELFEQI  137 (504)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHH
T ss_pred             EEcCCEEEEEEecCCCCcHHHHH
Confidence            99999999999999999998765

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.20  E-value=3.8e-11  Score=115.15  Aligned_cols=90  Identities=27%  Similarity=0.436  Sum_probs=77.9

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc----ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR----ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~----~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      ++|...+.||+|+||.||+|... +++.||||.+.......    ...+.|.+|++++.+++||||+++++++...+..+
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            35777899999999999999985 68999999987543211    13578999999999999999999999999999999


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +||||+++|+|.+++
T Consensus        85 lv~e~~~~~~L~~~l   99 (283)
T 3bhy_A           85 LILELVSGGELFDFL   99 (283)
T ss_dssp             EEEECCCSCBHHHHH
T ss_pred             EEEeecCCCcHHHHH
Confidence            999999999999876

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.20  E-value=3.4e-11  Score=115.18  Aligned_cols=88  Identities=20%  Similarity=0.287  Sum_probs=77.2

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      +.|...+.||+|+||.||+|... ++..||+|++.....  ...+.+.+|++++.+++||||++++++|...+..++|||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   86 (277)
T 3f3z_A            9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFV--EDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVME   86 (277)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGC--SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhcc--chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEe
Confidence            45777899999999999999985 478999999976432  235789999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        87 ~~~~~~L~~~~   97 (277)
T 3f3z_A           87 LCTGGELFERV   97 (277)
T ss_dssp             CCCSCBHHHHH
T ss_pred             ccCCCcHHHHH
Confidence            99999998765

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.19  E-value=1.6e-11  Score=117.64  Aligned_cols=88  Identities=23%  Similarity=0.433  Sum_probs=76.4

Q ss_pred             ccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      .++|...+.||+|+||.||+|...++..||||.+.....   ..+.|.+|++++.+++||||+++++++.. +..++|||
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e   87 (279)
T 1qpc_A           12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM---SPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITE   87 (279)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS---CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred             HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc---cHHHHHHHHHHHHhCCCcCcceEEEEEcC-CCcEEEEe
Confidence            456788899999999999999998888999999976432   25689999999999999999999999864 55789999


Q ss_pred             ecCCCCHhhhhC
Q 040888          484 YYRNGSLHEFLH  495 (495)
Q Consensus       484 y~~~GsL~~~L~  495 (495)
                      |+++|+|.++++
T Consensus        88 ~~~~~~L~~~l~   99 (279)
T 1qpc_A           88 YMENGSLVDFLK   99 (279)
T ss_dssp             CCTTCBHHHHTT
T ss_pred             cCCCCCHHHHHh
Confidence            999999998863

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.19  E-value=3.2e-11  Score=119.59  Aligned_cols=90  Identities=13%  Similarity=0.275  Sum_probs=77.2

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv  481 (495)
                      ++|...+.||+|+||.||+|+.. +++.||+|++....... ...+.+.+|..++.++ +|||||++++++...+..++|
T Consensus         9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv   88 (345)
T 3a8x_A            9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV   88 (345)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence            46778899999999999999985 58899999997653322 2345688999999987 899999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+++|+|.+++
T Consensus        89 ~e~~~gg~L~~~l  101 (345)
T 3a8x_A           89 IEYVNGGDLMFHM  101 (345)
T ss_dssp             ECCCCSCBHHHHH
T ss_pred             EeCCCCCcHHHHH
Confidence            9999999998875

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.19  E-value=2.8e-11  Score=122.40  Aligned_cols=90  Identities=23%  Similarity=0.438  Sum_probs=76.6

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC--EEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG--HNILI  481 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~--~~~lv  481 (495)
                      +.|...+.||+|+||.||+|... +|+.||||++...... ...+.+.+|++++.+++|||||++++++...+  ..++|
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv   87 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFL-RPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI   87 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGG-SCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEecccccc-chHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence            35677899999999999999985 5899999999754332 23567889999999999999999999998765  67999


Q ss_pred             EEecCCCCHhhhhC
Q 040888          482 YDYYRNGSLHEFLH  495 (495)
Q Consensus       482 ~ey~~~GsL~~~L~  495 (495)
                      |||+++|+|.++++
T Consensus        88 ~e~~~~g~L~~~l~  101 (396)
T 4eut_A           88 MEFCPCGSLYTVLE  101 (396)
T ss_dssp             ECCCTTEEHHHHTT
T ss_pred             EecCCCCCHHHHHH
Confidence            99999999998864

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.19  E-value=3.8e-11  Score=115.87  Aligned_cols=88  Identities=19%  Similarity=0.377  Sum_probs=75.0

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||+|... +++.||||++..........+.+.+|++++.+++||||+++++++..++..++|||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   81 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence            46778899999999999999984 68999999997654433345778999999999999999999999999999999999


Q ss_pred             ecCCCCHhhh
Q 040888          484 YYRNGSLHEF  493 (495)
Q Consensus       484 y~~~GsL~~~  493 (495)
                      |+++ ++.++
T Consensus        82 ~~~~-~l~~~   90 (292)
T 3o0g_A           82 FCDQ-DLKKY   90 (292)
T ss_dssp             CCSE-EHHHH
T ss_pred             cCCC-CHHHH
Confidence            9985 55443

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.19  E-value=2.4e-11  Score=117.69  Aligned_cols=91  Identities=19%  Similarity=0.345  Sum_probs=71.6

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc------------------------ccHHHHHHHHHHHh
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR------------------------ANSESFSEIVQNIS  458 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~------------------------~~~~~f~~e~~~l~  458 (495)
                      .++|...+.||+|+||.||+|.. .+++.||||++.......                        ...+.+.+|++++.
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   91 (298)
T 2zv2_A           12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK   91 (298)
T ss_dssp             ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred             ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence            35678889999999999999987 468899999986543211                        11346899999999


Q ss_pred             cCCCCCcceEEEEEEe--CCEEEEEEEecCCCCHhhhh
Q 040888          459 RIRHTNIAELVGFCSE--QGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       459 ~l~H~niv~l~g~~~~--~~~~~lv~ey~~~GsL~~~L  494 (495)
                      +++||||+++++++..  .+..++||||+++|+|.+++
T Consensus        92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~  129 (298)
T 2zv2_A           92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVP  129 (298)
T ss_dssp             TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSS
T ss_pred             hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHh
Confidence            9999999999999987  56789999999999987653

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.19  E-value=2.4e-11  Score=120.88  Aligned_cols=91  Identities=22%  Similarity=0.336  Sum_probs=77.7

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccc-ccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHF-QRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~l  480 (495)
                      .++|...+.||+|+||.||+|+.. +|+.||||++..... .....+.+.+|.+++..+ +|||||++++++...+..++
T Consensus        22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  101 (353)
T 3txo_A           22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF  101 (353)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence            467888999999999999999974 589999999976422 122356688999999988 79999999999999999999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+++|+|.+++
T Consensus       102 v~E~~~gg~L~~~l  115 (353)
T 3txo_A          102 VMEFVNGGDLMFHI  115 (353)
T ss_dssp             EEECCCSCBHHHHH
T ss_pred             EEeCCCCCcHHHHH
Confidence            99999999998876

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.19  E-value=2.4e-11  Score=126.31  Aligned_cols=90  Identities=20%  Similarity=0.378  Sum_probs=78.8

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      +.|...+.||+|+||.||+|... +++.||||++..........+.+.+|++++.+++|||||++++++...+..++|+|
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  101 (486)
T 3mwu_A           22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGE  101 (486)
T ss_dssp             HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEE
Confidence            45778899999999999999984 68999999997543333346789999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus       102 ~~~~~~L~~~~  112 (486)
T 3mwu_A          102 LYTGGELFDEI  112 (486)
T ss_dssp             CCCSCBHHHHH
T ss_pred             cCCCCcHHHHH
Confidence            99999998765

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.19  E-value=2.4e-11  Score=121.00  Aligned_cols=89  Identities=22%  Similarity=0.254  Sum_probs=78.3

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||+|... ++..||+|++..... ....+.+.+|++++.+++||||+++++++..++..++|||
T Consensus        33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  111 (360)
T 3eqc_A           33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIK-PAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME  111 (360)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCC-HHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccC-HHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence            46778899999999999999985 689999999976422 2235679999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus       112 ~~~~~~L~~~l  122 (360)
T 3eqc_A          112 HMDGGSLDQVL  122 (360)
T ss_dssp             CCTTCBHHHHH
T ss_pred             CCCCCCHHHHH
Confidence            99999999876

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.19  E-value=7.3e-12  Score=122.65  Aligned_cols=96  Identities=19%  Similarity=0.348  Sum_probs=81.0

Q ss_pred             HHHHHhccCCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEE
Q 040888          398 ADLLTATANFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF  471 (495)
Q Consensus       398 ~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~  471 (495)
                      +++....++|...+.||+|+||.||+|+..      .++.||||.+..... ......|.+|++++.+++||||++++++
T Consensus        18 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~   96 (322)
T 1p4o_A           18 DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAAS-MRERIEFLNEASVMKEFNCHHVVRLLGV   96 (322)
T ss_dssp             CTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSC-HHHHHHHHHHHHHGGGCCCTTBCCEEEE
T ss_pred             hhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccC-HHHHHHHHHHHHHHHhcCCCCEeeeEEE
Confidence            344555678888999999999999999864      367899999975432 1234579999999999999999999999


Q ss_pred             EEeCCEEEEEEEecCCCCHhhhh
Q 040888          472 CSEQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       472 ~~~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      +...+..++||||+++|+|.+++
T Consensus        97 ~~~~~~~~lv~e~~~~~~L~~~l  119 (322)
T 1p4o_A           97 VSQGQPTLVIMELMTRGDLKSYL  119 (322)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHH
T ss_pred             EccCCccEEEEEeCCCCcHHHHH
Confidence            99988999999999999999886

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.19  E-value=5.9e-11  Score=115.53  Aligned_cols=91  Identities=21%  Similarity=0.362  Sum_probs=76.7

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccc-ccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHF-QRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      .++|...+.||+|+||.||+|.. .+|+.||||++..... .....+.+.+|++++.+++||||+++++++...+..++|
T Consensus        31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv  110 (310)
T 2wqm_A           31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV  110 (310)
T ss_dssp             GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence            34688889999999999999997 5789999999975322 122356789999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+++|+|.+++
T Consensus       111 ~e~~~~~~L~~~l  123 (310)
T 2wqm_A          111 LELADAGDLSRMI  123 (310)
T ss_dssp             EECCCSCBHHHHH
T ss_pred             EecCCCCCHHHHH
Confidence            9999999998875

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.19  E-value=1.8e-11  Score=117.79  Aligned_cols=88  Identities=27%  Similarity=0.508  Sum_probs=76.0

Q ss_pred             cCCcccceeccCCceEEEEEEcCC-C-------CEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPD-G-------KVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG  476 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~-g-------~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~  476 (495)
                      ++|...+.||+|+||.||+|.... +       ..||+|.+.....  ...+.|.+|++++.+++||||++++++|..++
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   85 (289)
T 4fvq_A            8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHR--NYSESFFEAASMMSKLSHKHLVLNYGVCVCGD   85 (289)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGG--GGHHHHHHHHHHHHTSCCTTBCCEEEEECCTT
T ss_pred             hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccH--HHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCC
Confidence            457778999999999999998743 3       4799999965432  33578999999999999999999999999999


Q ss_pred             EEEEEEEecCCCCHhhhh
Q 040888          477 HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L  494 (495)
                      ..++||||+++|+|.+++
T Consensus        86 ~~~lv~e~~~~~~L~~~l  103 (289)
T 4fvq_A           86 ENILVQEFVKFGSLDTYL  103 (289)
T ss_dssp             CCEEEEECCTTCBHHHHH
T ss_pred             CCEEEEECCCCCCHHHHH
Confidence            999999999999999886

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.19  E-value=8.5e-11  Score=114.66  Aligned_cols=87  Identities=24%  Similarity=0.323  Sum_probs=74.6

Q ss_pred             CCcc-cceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhc-CCCCCcceEEEEEEeCCEEEEEE
Q 040888          406 NFAT-GRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISR-IRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       406 ~f~~-~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~-l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .|.. .+.||+|+||.||+|.. .+++.||||++.....  ...+.+.+|++++.+ .+||||+++++++...+..++||
T Consensus        13 ~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~   90 (316)
T 2ac3_A           13 VYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPG--HIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVF   90 (316)
T ss_dssp             SCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSS--CCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             eEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcc--hhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEE
Confidence            4554 47899999999999997 4689999999975432  235689999999998 47999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        91 e~~~~~~L~~~l  102 (316)
T 2ac3_A           91 EKMRGGSILSHI  102 (316)
T ss_dssp             ECCTTCBHHHHH
T ss_pred             EcCCCCcHHHHH
Confidence            999999999876

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.19  E-value=1.6e-11  Score=119.61  Aligned_cols=90  Identities=29%  Similarity=0.513  Sum_probs=77.2

Q ss_pred             ccCCcccceeccCCceEEEEEEc------CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGH  477 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  477 (495)
                      .++|...+.||+|+||.||+|..      .++..||||.+..... ....+.+.+|++++.+++||||+++++++...+.
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  100 (314)
T 2ivs_A           22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENAS-PSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP  100 (314)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCC-HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred             hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCC-HHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc
Confidence            45677789999999999999986      2457899999975432 2235679999999999999999999999999999


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++||||+++|+|.+++
T Consensus       101 ~~lv~e~~~~~~L~~~l  117 (314)
T 2ivs_A          101 LLLIVEYAKYGSLRGFL  117 (314)
T ss_dssp             CEEEEECCTTCBHHHHH
T ss_pred             eEEEEeecCCCCHHHHH
Confidence            99999999999999886

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.18  E-value=5.3e-11  Score=114.70  Aligned_cols=88  Identities=16%  Similarity=0.320  Sum_probs=74.4

Q ss_pred             CcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe----CCEEEEE
Q 040888          407 FATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE----QGHNILI  481 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~----~~~~~lv  481 (495)
                      |...+.||+|+||.||+|.. .++..||+|.+..........+.+.+|++++.+++||||+++++++..    ....++|
T Consensus        28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv  107 (290)
T 1t4h_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV  107 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred             EEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEE
Confidence            45567899999999999987 458899999997654433345779999999999999999999999876    3557899


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+++|+|.+++
T Consensus       108 ~e~~~~~~L~~~l  120 (290)
T 1t4h_A          108 TELMTSGTLKTYL  120 (290)
T ss_dssp             EECCCSCBHHHHH
T ss_pred             EEecCCCCHHHHH
Confidence            9999999999876

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.18  E-value=2.5e-11  Score=116.28  Aligned_cols=91  Identities=29%  Similarity=0.447  Sum_probs=78.0

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      .++|...+.||+|+||.||+|... ++..||||++...... ....+.+.+|++++.+++||||++++++|...+..++|
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   87 (279)
T 3fdn_A            8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI   87 (279)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence            467888899999999999999874 5789999998654321 12356789999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+++|+|.+++
T Consensus        88 ~e~~~~~~l~~~l  100 (279)
T 3fdn_A           88 LEYAPLGTVYREL  100 (279)
T ss_dssp             ECCCTTEEHHHHH
T ss_pred             EecCCCCcHHHHH
Confidence            9999999998775

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.18  E-value=4e-11  Score=117.51  Aligned_cols=90  Identities=22%  Similarity=0.349  Sum_probs=78.0

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc----ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR----ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~----~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      +.|...+.||+|+||.||+|... +|+.||||.+.......    ...+.+.+|++++.+++||||+++++++...+..+
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   91 (321)
T 2a2a_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVV   91 (321)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence            45777899999999999999985 68999999997543211    13567999999999999999999999999999999


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +||||+++|+|.+++
T Consensus        92 lv~e~~~~~~L~~~l  106 (321)
T 2a2a_A           92 LILELVSGGELFDFL  106 (321)
T ss_dssp             EEECCCCSCBHHHHH
T ss_pred             EEEEcCCCCcHHHHH
Confidence            999999999999876

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.18  E-value=1.8e-11  Score=119.46  Aligned_cols=89  Identities=22%  Similarity=0.275  Sum_probs=72.6

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|+..+.||+|+||+||+|... +|+.||||++............+..|+..+.++ +|||||+++++|...+..++||
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~  136 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT  136 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence            46888899999999999999985 699999999865433222344566666666655 9999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+ +|+|.+++
T Consensus       137 e~~-~~~L~~~~  147 (311)
T 3p1a_A          137 ELC-GPSLQQHC  147 (311)
T ss_dssp             ECC-CCBHHHHH
T ss_pred             ecc-CCCHHHHH
Confidence            999 67888764

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.18  E-value=2.8e-11  Score=125.11  Aligned_cols=91  Identities=24%  Similarity=0.438  Sum_probs=78.8

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|+.. +|+.||||++....... ...+.+.+|+++++.++||||+++++++...+..++||
T Consensus        16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~   95 (476)
T 2y94_A           16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM   95 (476)
T ss_dssp             TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            56778899999999999999985 69999999997543211 23467899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhhC
Q 040888          483 DYYRNGSLHEFLH  495 (495)
Q Consensus       483 ey~~~GsL~~~L~  495 (495)
                      ||+++|+|.+++.
T Consensus        96 E~~~gg~L~~~l~  108 (476)
T 2y94_A           96 EYVSGGELFDYIC  108 (476)
T ss_dssp             ECCSSEEHHHHTT
T ss_pred             eCCCCCcHHHHHH
Confidence            9999999998863

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.18  E-value=7e-11  Score=113.95  Aligned_cols=87  Identities=26%  Similarity=0.396  Sum_probs=74.5

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      +|....+||+|+||.||+|.. .+++.||||.+.....  ...+.+.+|+.++.+++||||+++++++...+..++||||
T Consensus        23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  100 (295)
T 2clq_A           23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDS--RYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQ  100 (295)
T ss_dssp             TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC-----HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCch--HHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEe
Confidence            345567899999999999997 5688999999875432  2356799999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus       101 ~~~~~L~~~l  110 (295)
T 2clq_A          101 VPGGSLSALL  110 (295)
T ss_dssp             CSEEEHHHHH
T ss_pred             CCCCCHHHHH
Confidence            9999998875

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.18  E-value=3.1e-11  Score=119.64  Aligned_cols=92  Identities=16%  Similarity=0.345  Sum_probs=78.1

Q ss_pred             hccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccc-ccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEE
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHF-QRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~  479 (495)
                      ..++|...+.||+|+||.||+|+.. +|+.||||+++.... .....+.+..|.+++..+ +||||+++++++...+..+
T Consensus        15 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~   94 (345)
T 1xjd_A           15 KIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLF   94 (345)
T ss_dssp             -CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred             ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEE
Confidence            4568888999999999999999985 589999999976432 112346688899999876 9999999999999999999


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +||||+++|+|.+++
T Consensus        95 lv~E~~~gg~L~~~l  109 (345)
T 1xjd_A           95 FVMEYLNGGDLMYHI  109 (345)
T ss_dssp             EEEECCTTCBHHHHH
T ss_pred             EEEeCCCCCcHHHHH
Confidence            999999999999876

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.18  E-value=4.1e-11  Score=114.37  Aligned_cols=89  Identities=22%  Similarity=0.325  Sum_probs=78.0

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||+|... +++.||||.+...... ...+.+.+|++++.+++||||+++++++...+..++|+|
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   85 (276)
T 2yex_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV-DCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (276)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCT-THHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccch-hhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence            46778899999999999999985 6899999998754322 235779999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        86 ~~~~~~L~~~l   96 (276)
T 2yex_A           86 YCSGGELFDRI   96 (276)
T ss_dssp             CCTTEEGGGGS
T ss_pred             ecCCCcHHHHH
Confidence            99999998876

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.18  E-value=2.7e-11  Score=119.22  Aligned_cols=91  Identities=25%  Similarity=0.399  Sum_probs=74.7

Q ss_pred             hccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      ..++|...+.||+|+||.||+|.. .+++.||||++..........+.+.+|++++.+++|||||++++++..++..++|
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  111 (329)
T 3gbz_A           32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLI  111 (329)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred             chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEE
Confidence            356788899999999999999986 4689999999976543333356788999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||++ |+|.+++
T Consensus       112 ~e~~~-~~L~~~~  123 (329)
T 3gbz_A          112 FEYAE-NDLKKYM  123 (329)
T ss_dssp             EECCS-EEHHHHH
T ss_pred             EecCC-CCHHHHH
Confidence            99998 5888775

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.17  E-value=1.1e-11  Score=119.38  Aligned_cols=89  Identities=24%  Similarity=0.486  Sum_probs=78.4

Q ss_pred             hccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      ..++|...+.||+|+||.||+|... ++..||+|.+....   ...+.|.+|++++.+++||||+++++++...+..++|
T Consensus        11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v   87 (288)
T 3kfa_A           11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT---MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII   87 (288)
T ss_dssp             CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS---THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEE
T ss_pred             cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH---HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEE
Confidence            4567888899999999999999985 48899999997543   2357899999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+++|+|.+++
T Consensus        88 ~e~~~~~~L~~~~  100 (288)
T 3kfa_A           88 TEFMTYGNLLDYL  100 (288)
T ss_dssp             EECCTTEEHHHHH
T ss_pred             EEcCCCCcHHHHH
Confidence            9999999999876

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.17  E-value=2.5e-11  Score=115.64  Aligned_cols=89  Identities=27%  Similarity=0.477  Sum_probs=72.1

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccc--cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQ--RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~--~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|... ++.||||++......  ....+.+.+|++++.+++||||++++++|...+..++||
T Consensus         7 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   85 (271)
T 3dtc_A            7 AELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM   85 (271)
T ss_dssp             TSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred             hheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence            46777899999999999999984 889999998754321  123467999999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        86 e~~~~~~L~~~~   97 (271)
T 3dtc_A           86 EFARGGPLNRVL   97 (271)
T ss_dssp             ECCTTEEHHHHH
T ss_pred             EcCCCCCHHHHh
Confidence            999999998876

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.17  E-value=4.7e-11  Score=114.90  Aligned_cols=91  Identities=20%  Similarity=0.376  Sum_probs=79.7

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .++|...+.||+|+||.||+|+.. +++.||||++..........+.+.+|++++.+++||||+++++++...+..++|+
T Consensus        21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~  100 (287)
T 2wei_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (287)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEE
Confidence            356888899999999999999985 6899999999765433334678999999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus       101 e~~~~~~L~~~l  112 (287)
T 2wei_A          101 ELYTGGELFDEI  112 (287)
T ss_dssp             CCCCSCBHHHHH
T ss_pred             EccCCCCHHHHH
Confidence            999999998765

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.17  E-value=2.7e-11  Score=122.19  Aligned_cols=91  Identities=12%  Similarity=0.265  Sum_probs=76.4

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~l  480 (495)
                      .++|...+.||+|+||+||+|+.. +++.||||++....... ...+.+.+|..++.++ +|||||++++++...+..++
T Consensus        51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  130 (396)
T 4dc2_A           51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF  130 (396)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence            457888999999999999999985 58899999997653321 2234678899999887 89999999999999999999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+++|+|.+++
T Consensus       131 V~E~~~gg~L~~~l  144 (396)
T 4dc2_A          131 VIEYVNGGDLMFHM  144 (396)
T ss_dssp             EEECCTTCBHHHHH
T ss_pred             EEEcCCCCcHHHHH
Confidence            99999999998875

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.17  E-value=2.1e-11  Score=117.88  Aligned_cols=88  Identities=30%  Similarity=0.522  Sum_probs=74.2

Q ss_pred             cCCcccceeccCCceEEEEEEc-----CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--CE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-----PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ--GH  477 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~  477 (495)
                      ++|...+.||+|+||.||+|++     .+++.||||++.....  ...+.|.+|++++.+++||||++++++|...  ..
T Consensus        10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   87 (295)
T 3ugc_A           10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE--EHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN   87 (295)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCH--HHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTS
T ss_pred             HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCH--HHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCc
Confidence            4567789999999999999984     3588999999975432  2356799999999999999999999999653  45


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++||||+++|+|.+++
T Consensus        88 ~~lv~e~~~~~~L~~~l  104 (295)
T 3ugc_A           88 LKLIMEYLPYGSLRDYL  104 (295)
T ss_dssp             CEEEEECCTTCBHHHHH
T ss_pred             eEEEEEeCCCCCHHHHH
Confidence            78999999999999876

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.17  E-value=4e-11  Score=114.77  Aligned_cols=91  Identities=26%  Similarity=0.487  Sum_probs=78.4

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      .++|...+.||+|+||.||+|+. .+|+.||||.+...... ....+.+.+|++++.+++||||+++++++...+..++|
T Consensus        10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (278)
T 3cok_A           10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV   89 (278)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence            35678889999999999999997 57999999999654321 12246799999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      +||+++|+|.+++
T Consensus        90 ~e~~~~~~L~~~l  102 (278)
T 3cok_A           90 LEMCHNGEMNRYL  102 (278)
T ss_dssp             EECCTTEEHHHHH
T ss_pred             EecCCCCcHHHHH
Confidence            9999999998875

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.17  E-value=6.1e-11  Score=113.26  Aligned_cols=90  Identities=23%  Similarity=0.430  Sum_probs=78.1

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|+.. +|+.||||.+...... ....+.+.+|++.+.+++||||+++++++...+..++||
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   90 (276)
T 2h6d_A           11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVM   90 (276)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEE
Confidence            46777899999999999999985 6999999998654321 123567899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        91 e~~~~~~L~~~l  102 (276)
T 2h6d_A           91 EYVSGGELFDYI  102 (276)
T ss_dssp             ECCCSCBHHHHH
T ss_pred             eccCCCcHHHHH
Confidence            999999998876

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.16  E-value=6.4e-11  Score=114.68  Aligned_cols=88  Identities=28%  Similarity=0.489  Sum_probs=72.6

Q ss_pred             CCcccceeccCCceEEEEEEc-----CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--CEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-----PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ--GHN  478 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~~  478 (495)
                      .|...+.||+|+||.||+|++     .+++.||||++..... ....+.+.+|++++.+++||||+++++++...  ...
T Consensus        22 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  100 (302)
T 4e5w_A           22 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESG-GNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI  100 (302)
T ss_dssp             GEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred             hhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEeccccc-chhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence            466779999999999999984     3688999999975432 22357899999999999999999999999876  568


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++||||+++|+|.+++
T Consensus       101 ~lv~e~~~~~~L~~~l  116 (302)
T 4e5w_A          101 KLIMEFLPSGSLKEYL  116 (302)
T ss_dssp             EEEEECCTTCBHHHHH
T ss_pred             EEEEEeCCCCcHHHHH
Confidence            9999999999999886

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.16  E-value=7.6e-11  Score=114.33  Aligned_cols=90  Identities=21%  Similarity=0.344  Sum_probs=78.3

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      +.|...+.||+|+||.||+|.. .+++.||||.+...... ...+.+.+|+.++.+++||||+++++++...+..++|||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e  100 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAE-DEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME  100 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCS-TTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccH-HHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence            3577789999999999999987 46899999999755332 235789999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhhC
Q 040888          484 YYRNGSLHEFLH  495 (495)
Q Consensus       484 y~~~GsL~~~L~  495 (495)
                      |+++|+|.++++
T Consensus       101 ~~~~~~L~~~~~  112 (303)
T 3a7i_A          101 YLGGGSALDLLE  112 (303)
T ss_dssp             CCTTEEHHHHHT
T ss_pred             eCCCCcHHHHHh
Confidence            999999998763

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.16  E-value=3.1e-11  Score=118.99  Aligned_cols=90  Identities=28%  Similarity=0.517  Sum_probs=76.2

Q ss_pred             ccCCcccceeccCCceEEEEEEcC--------CCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEe
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP--------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSE  474 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~--------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~  474 (495)
                      .++|...+.||+|+||.||+|...        ++..||||++..... ....+.+.+|++++.++ +||||++++++|..
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~  112 (334)
T 2pvf_A           34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDAT-EKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ  112 (334)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCC-HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCc-HHHHHHHHHHHHHHHHhhcCCCEeeEEEEEcc
Confidence            356778899999999999999863        467899999975432 22356789999999999 99999999999999


Q ss_pred             CCEEEEEEEecCCCCHhhhh
Q 040888          475 QGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       475 ~~~~~lv~ey~~~GsL~~~L  494 (495)
                      .+..++||||+++|+|.+++
T Consensus       113 ~~~~~lv~e~~~~~~L~~~l  132 (334)
T 2pvf_A          113 DGPLYVIVEYASKGNLREYL  132 (334)
T ss_dssp             SSCCEEEEECCTTCBHHHHH
T ss_pred             CCceEEEEECCCCCcHHHHH
Confidence            99999999999999999886

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.16  E-value=1.9e-11  Score=119.01  Aligned_cols=90  Identities=29%  Similarity=0.502  Sum_probs=77.4

Q ss_pred             ccCCcccceeccCCceEEEEEEc------CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCC
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQG  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~  476 (495)
                      .++|...+.||+|+||.||+|+.      .+++.||||.+..... ....+.+.+|++++.++ +||||++++++|...+
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~  100 (313)
T 1t46_A           22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAH-LTEREALMSELKVLSYLGNHMNIVNLLGACTIGG  100 (313)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC-HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchh-HHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC
Confidence            45677889999999999999984      3477999999975432 12356799999999999 9999999999999999


Q ss_pred             EEEEEEEecCCCCHhhhh
Q 040888          477 HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L  494 (495)
                      ..++||||+++|+|.+++
T Consensus       101 ~~~lv~e~~~~~~L~~~l  118 (313)
T 1t46_A          101 PTLVITEYCCYGDLLNFL  118 (313)
T ss_dssp             SCEEEEECCTTEEHHHHH
T ss_pred             CcEEEEecCCCCCHHHHH
Confidence            999999999999999876

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.16  E-value=2.2e-11  Score=120.56  Aligned_cols=89  Identities=22%  Similarity=0.405  Sum_probs=77.8

Q ss_pred             ccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCccccccc---------------HHHHHHHHHHHhcCCCCCcceE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRAN---------------SESFSEIVQNISRIRHTNIAEL  468 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~---------------~~~f~~e~~~l~~l~H~niv~l  468 (495)
                      .++|...+.||+|+||.||+|.. +++.||||++.........               .+.|.+|++++.+++||||+++
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  108 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC  108 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence            45788899999999999999999 8999999999754322111               1789999999999999999999


Q ss_pred             EEEEEeCCEEEEEEEecCCCCHhhh
Q 040888          469 VGFCSEQGHNILIYDYYRNGSLHEF  493 (495)
Q Consensus       469 ~g~~~~~~~~~lv~ey~~~GsL~~~  493 (495)
                      ++++...+..++||||+++|+|.++
T Consensus       109 ~~~~~~~~~~~lv~e~~~~~~L~~~  133 (348)
T 2pml_X          109 EGIITNYDEVYIIYEYMENDSILKF  133 (348)
T ss_dssp             SEEEESSSEEEEEEECCTTCBSSEE
T ss_pred             EEEEeeCCeEEEEEeccCCCcHHHH
Confidence            9999999999999999999999887

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.15  E-value=8.8e-11  Score=115.36  Aligned_cols=80  Identities=23%  Similarity=0.338  Sum_probs=71.5

Q ss_pred             cceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-CCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          410 GRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-HTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      .+.||+|+||.||+|... +++.||||++...     ....+.+|++.+.+++ |||||++++++...+..++||||+++
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~   90 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR-----MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNG   90 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG-----GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChh-----hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCC
Confidence            478999999999999984 6899999998643     2457889999999997 99999999999999999999999999


Q ss_pred             CCHhhhh
Q 040888          488 GSLHEFL  494 (495)
Q Consensus       488 GsL~~~L  494 (495)
                      |+|.+++
T Consensus        91 ~~L~~~l   97 (325)
T 3kn6_A           91 GELFERI   97 (325)
T ss_dssp             CBHHHHH
T ss_pred             CcHHHHH
Confidence            9998876

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.15  E-value=6e-11  Score=115.18  Aligned_cols=88  Identities=25%  Similarity=0.399  Sum_probs=75.0

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||+|... +|+.||+|.+.....  ...+.+.+|++++.+++||||+++++++...+..++|||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   86 (304)
T 2jam_A            9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPA--FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQ   86 (304)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC--------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccc--cchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEE
Confidence            45777899999999999999984 689999999975432  224578899999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        87 ~~~~~~L~~~l   97 (304)
T 2jam_A           87 LVSGGELFDRI   97 (304)
T ss_dssp             CCCSCBHHHHH
T ss_pred             cCCCccHHHHH
Confidence            99999998875

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.15  E-value=4.1e-11  Score=126.00  Aligned_cols=91  Identities=20%  Similarity=0.304  Sum_probs=79.1

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      .++|...+.||+|+||.||+|... +|+.||||++...... ....+.+.+|++++.+++|||||++++++...+..++|
T Consensus       183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  262 (576)
T 2acx_A          183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV  262 (576)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence            467888999999999999999984 6999999999754321 22356788999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      ||||++|+|.+++
T Consensus       263 mEy~~gg~L~~~l  275 (576)
T 2acx_A          263 LTLMNGGDLKFHI  275 (576)
T ss_dssp             ECCCCSCBHHHHH
T ss_pred             EEcCCCCcHHHHH
Confidence            9999999998876

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.15  E-value=3.1e-11  Score=121.44  Aligned_cols=90  Identities=29%  Similarity=0.487  Sum_probs=76.8

Q ss_pred             ccCCcccceeccCCceEEEEEEcC--------CCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEe
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP--------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSE  474 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~--------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~  474 (495)
                      .++|...+.||+|+||.||+|+..        .+..||||++..... ....+.+.+|++++.++ +|||||+++++|..
T Consensus        68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~  146 (382)
T 3tt0_A           68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDAT-EKDLSDLISEMEMMKMIGKHKNIINLLGACTQ  146 (382)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCC-HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccC-HHHHHHHHHHHHHHHHhcCCchhhhheeeecc
Confidence            456788899999999999999852        245799999976532 22356799999999999 99999999999999


Q ss_pred             CCEEEEEEEecCCCCHhhhh
Q 040888          475 QGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       475 ~~~~~lv~ey~~~GsL~~~L  494 (495)
                      .+..++||||+++|+|.+++
T Consensus       147 ~~~~~lv~e~~~~g~L~~~l  166 (382)
T 3tt0_A          147 DGPLYVIVEYASKGNLREYL  166 (382)
T ss_dssp             SSSCEEEEECCTTCBHHHHH
T ss_pred             CCceEEEEEecCCCcHHHHH
Confidence            99999999999999999886

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.15  E-value=8e-11  Score=114.70  Aligned_cols=91  Identities=16%  Similarity=0.289  Sum_probs=78.7

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      .++|...+.||+|+||.||+|... +++.||+|++....... ...+.+.+|++++.+++||||+++++++..++..++|
T Consensus        33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  112 (309)
T 2h34_A           33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD  112 (309)
T ss_dssp             -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence            467888999999999999999974 68899999997643221 2246789999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      +||+++|+|.+++
T Consensus       113 ~e~~~~~~L~~~l  125 (309)
T 2h34_A          113 MRLINGVDLAAML  125 (309)
T ss_dssp             EECCCCEEHHHHH
T ss_pred             EEecCCCCHHHHH
Confidence            9999999999876

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.15  E-value=6.7e-11  Score=114.55  Aligned_cols=89  Identities=21%  Similarity=0.413  Sum_probs=75.4

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .+.|...+.||+|+||.||+|... +++.||+|.+.....  ...+.|.+|++++.+++||||+++++++...+..++||
T Consensus        18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   95 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSE--EELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMI   95 (302)
T ss_dssp             GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC------CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEE
T ss_pred             ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCH--HHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEE
Confidence            356778899999999999999985 589999999875432  23578999999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        96 e~~~~~~l~~~~  107 (302)
T 2j7t_A           96 EFCPGGAVDAIM  107 (302)
T ss_dssp             ECCTTEEHHHHH
T ss_pred             EeCCCCcHHHHH
Confidence            999999998765

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.15  E-value=6.9e-11  Score=120.38  Aligned_cols=91  Identities=16%  Similarity=0.301  Sum_probs=74.7

Q ss_pred             hccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc------ccHHHHHHHHHHHhcCCCCCcceEEEEEEeC
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR------ANSESFSEIVQNISRIRHTNIAELVGFCSEQ  475 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~------~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~  475 (495)
                      ..++|...+.||+|+||.||+|.. .+++.||||++.......      .....+.+|++++.+++|||||++++++. .
T Consensus       133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-~  211 (419)
T 3i6u_A          133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-A  211 (419)
T ss_dssp             HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-S
T ss_pred             hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-c
Confidence            356899999999999999999987 458999999997543211      11235889999999999999999999975 4


Q ss_pred             CEEEEEEEecCCCCHhhhh
Q 040888          476 GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       476 ~~~~lv~ey~~~GsL~~~L  494 (495)
                      +..++|||||++|+|.+++
T Consensus       212 ~~~~lv~e~~~~g~L~~~l  230 (419)
T 3i6u_A          212 EDYYIVLELMEGGELFDKV  230 (419)
T ss_dssp             SEEEEEEECCTTCBGGGGT
T ss_pred             CceEEEEEcCCCCcHHHHH
Confidence            5679999999999998876

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.15  E-value=4.6e-11  Score=117.54  Aligned_cols=89  Identities=20%  Similarity=0.449  Sum_probs=77.0

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||+|... +|+.||||++..........+.+.+|++++.+++||||++++++|...+..++|||
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  104 (331)
T 4aaa_A           25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFE  104 (331)
T ss_dssp             GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEe
Confidence            46778899999999999999985 58999999986554333335678899999999999999999999999999999999


Q ss_pred             ecCCCCHhhh
Q 040888          484 YYRNGSLHEF  493 (495)
Q Consensus       484 y~~~GsL~~~  493 (495)
                      |+++++|.++
T Consensus       105 ~~~~~~l~~~  114 (331)
T 4aaa_A          105 FVDHTILDDL  114 (331)
T ss_dssp             CCSEEHHHHH
T ss_pred             cCCcchHHHH
Confidence            9999888765

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.15  E-value=7.6e-11  Score=113.79  Aligned_cols=90  Identities=20%  Similarity=0.358  Sum_probs=77.2

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||++... +++.||+|.+...... ....+.+.+|++++++++||||+++++++...+..++||
T Consensus        15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   94 (294)
T 2rku_A           15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL   94 (294)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEE
Confidence            45677899999999999999985 5889999998754322 223567899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        95 e~~~~~~L~~~~  106 (294)
T 2rku_A           95 ELCRRRSLLELH  106 (294)
T ss_dssp             ECCTTCBHHHHH
T ss_pred             ecCCCCCHHHHH
Confidence            999999998865

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.15  E-value=7.6e-11  Score=113.97  Aligned_cols=89  Identities=26%  Similarity=0.472  Sum_probs=73.4

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||+|... +|+.||||++..........+.+.+|++++.+++||||+++++++..++..++|||
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (299)
T 2r3i_A            3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   82 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence            56788899999999999999985 68999999997654323335678999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |++ |+|.+++
T Consensus        83 ~~~-~~L~~~~   92 (299)
T 2r3i_A           83 FLH-QDLKKFM   92 (299)
T ss_dssp             CCS-EEHHHHH
T ss_pred             ccc-CCHHHHH
Confidence            997 6888765

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.15  E-value=1.5e-11  Score=119.89  Aligned_cols=90  Identities=19%  Similarity=0.287  Sum_probs=75.3

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC----EE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQG----HN  478 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~----~~  478 (495)
                      ++|...+.||+|+||.||+|.. .+++.||||++....... ...+.|.+|++++.+++|||||++++++....    ..
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~   91 (311)
T 3ork_A           12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP   91 (311)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred             CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCccc
Confidence            4677789999999999999997 568999999997653221 22457899999999999999999999987643    34


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++||||+++|+|.+++
T Consensus        92 ~lv~e~~~g~~L~~~l  107 (311)
T 3ork_A           92 YIVMEYVDGVTLRDIV  107 (311)
T ss_dssp             EEEEECCCEEEHHHHH
T ss_pred             EEEEecCCCCCHHHHH
Confidence            8999999999999876

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.15  E-value=2.5e-11  Score=120.07  Aligned_cols=92  Identities=27%  Similarity=0.487  Sum_probs=76.7

Q ss_pred             HhccCCcccceeccCCceEEEEEEc------CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEe
Q 040888          402 TATANFATGRLLGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSE  474 (495)
Q Consensus       402 ~~t~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~  474 (495)
                      ...++|...+.||+|+||.||+|..      .++..||||.+..... ....+.+.+|++++.++ +||||+++++++..
T Consensus        42 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~  120 (344)
T 1rjb_A           42 FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD-SSEREALMSELKMMTQLGSHENIVNLLGACTL  120 (344)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC-------CHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             cCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccC-HHHHHHHHHHHHHHHhhcCCCCeeeEEEEEee
Confidence            3456788899999999999999986      2456899999975432 22356899999999999 99999999999999


Q ss_pred             CCEEEEEEEecCCCCHhhhh
Q 040888          475 QGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       475 ~~~~~lv~ey~~~GsL~~~L  494 (495)
                      .+..++||||+++|+|.+++
T Consensus       121 ~~~~~lv~e~~~~g~L~~~l  140 (344)
T 1rjb_A          121 SGPIYLIFEYCCYGDLLNYL  140 (344)
T ss_dssp             SSSCEEEEECCTTCBHHHHH
T ss_pred             CCccEEEEecCCCCcHHHHH
Confidence            99999999999999999876

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.15  E-value=3.9e-11  Score=118.44  Aligned_cols=90  Identities=19%  Similarity=0.356  Sum_probs=76.7

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      .++|...+.||+|+||.||+|.. .+++.||||++...... ....+.+.+|++++..++||||+++++++...+..++|
T Consensus         8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv   87 (336)
T 3h4j_B            8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV   87 (336)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            35678889999999999999997 57899999998754221 12246789999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+ +|+|.+++
T Consensus        88 ~E~~-~g~l~~~l   99 (336)
T 3h4j_B           88 IEYA-GGELFDYI   99 (336)
T ss_dssp             ECCC-CEEHHHHH
T ss_pred             EECC-CCcHHHHH
Confidence            9999 68888875

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.14  E-value=9.6e-11  Score=114.61  Aligned_cols=87  Identities=25%  Similarity=0.458  Sum_probs=73.8

Q ss_pred             CcccceeccCCceEEEEEEcC-----CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--CEEE
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ--GHNI  479 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-----~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--~~~~  479 (495)
                      |...+.||+|+||.||++.+.     +++.||||++..... ....+.|.+|++++.+++||||+++++++...  ...+
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  111 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAG-PQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQ  111 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEE
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccC-hHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEE
Confidence            366789999999999998752     578999999976532 22356799999999999999999999999884  5789


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +||||+++|+|.+++
T Consensus       112 lv~e~~~~~~L~~~l  126 (318)
T 3lxp_A          112 LVMEYVPLGSLRDYL  126 (318)
T ss_dssp             EEECCCTTCBHHHHG
T ss_pred             EEEecccCCcHHHHH
Confidence            999999999999876

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.14  E-value=7.8e-11  Score=113.25  Aligned_cols=88  Identities=22%  Similarity=0.359  Sum_probs=73.3

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccc-----cHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRA-----NSESFSEIVQNISRIRHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~-----~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  478 (495)
                      ++|...+.||+|+||.||+|.. .+++.||||++........     ..+.|.+|++++.+++||||+++++++....  
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--   96 (287)
T 4f0f_A           19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP--   96 (287)
T ss_dssp             TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred             ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence            4677789999999999999998 4689999999865432211     1267999999999999999999999986655  


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++||||+++|+|.+++
T Consensus        97 ~lv~e~~~~~~L~~~l  112 (287)
T 4f0f_A           97 RMVMEFVPCGDLYHRL  112 (287)
T ss_dssp             EEEEECCTTCBHHHHH
T ss_pred             eEEEEecCCCCHHHHH
Confidence            6999999999998765

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.13  E-value=2.8e-11  Score=117.89  Aligned_cols=83  Identities=31%  Similarity=0.568  Sum_probs=71.5

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      ++|...+.||+|+||.||+|... ++.||||++....    ..+.|.+|++++++++||||+++++++.+  ..++||||
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~----~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e~   80 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESES----ERKAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVMEY   80 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSSTT----HHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEEC
T ss_pred             hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecChh----HHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEEc
Confidence            35667899999999999999984 7789999986432    35689999999999999999999998863  46899999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        81 ~~~~~L~~~l   90 (307)
T 2eva_A           81 AEGGSLYNVL   90 (307)
T ss_dssp             CTTCBHHHHH
T ss_pred             CCCCCHHHHH
Confidence            9999999876

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.13  E-value=5.9e-11  Score=114.00  Aligned_cols=90  Identities=24%  Similarity=0.443  Sum_probs=77.4

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|... +++.||||.+...... ....+.+.+|++++.+++||||+++++++...+..++|+
T Consensus        14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   93 (284)
T 2vgo_A           14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML   93 (284)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence            46778899999999999999985 5789999998654321 123467999999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        94 e~~~~~~L~~~l  105 (284)
T 2vgo_A           94 EFAPRGELYKEL  105 (284)
T ss_dssp             CCCTTEEHHHHH
T ss_pred             EeCCCCcHHHHH
Confidence            999999998875

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.13  E-value=7.4e-11  Score=122.49  Aligned_cols=90  Identities=29%  Similarity=0.478  Sum_probs=78.5

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      +.|...+.||+|+||.||+|... +|+.||||++...... ....+.+.+|++++.+++|||||++++++...+..++|+
T Consensus        26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  105 (484)
T 3nyv_A           26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVG  105 (484)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            45777899999999999999985 6899999999754332 233678999999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus       106 e~~~~~~L~~~~  117 (484)
T 3nyv_A          106 EVYTGGELFDEI  117 (484)
T ss_dssp             CCCCSCBHHHHH
T ss_pred             ecCCCCCHHHHH
Confidence            999999998765

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.13  E-value=6.3e-11  Score=124.11  Aligned_cols=91  Identities=19%  Similarity=0.302  Sum_probs=78.8

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      .++|...+.||+|+||.||+|+.. +|+.||+|++...... ....+.+.+|++++.+++|||||++++++...+..++|
T Consensus       184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  263 (543)
T 3c4z_A          184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV  263 (543)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence            357888899999999999999985 6999999999754321 12356789999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+++|+|.+++
T Consensus       264 mE~~~gg~L~~~l  276 (543)
T 3c4z_A          264 MTIMNGGDIRYHI  276 (543)
T ss_dssp             ECCCTTCBHHHHH
T ss_pred             EEeccCCCHHHHH
Confidence            9999999998876

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.13  E-value=3.7e-11  Score=118.00  Aligned_cols=90  Identities=26%  Similarity=0.388  Sum_probs=74.4

Q ss_pred             ccCCcccceeccCCceEEEEEEc------CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGH  477 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  477 (495)
                      .++|...+.||+|+||.||+|..      .++..||||.+..... .....+|.+|+.++.+++||||+++++++...+.
T Consensus        29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  107 (327)
T 2yfx_A           29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS-EQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP  107 (327)
T ss_dssp             GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccc-hhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCC
Confidence            35678889999999999999985      2477999999975422 2235679999999999999999999999999888


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++||||+++|+|.+++
T Consensus       108 ~~lv~e~~~~~~L~~~l  124 (327)
T 2yfx_A          108 RFILMELMAGGDLKSFL  124 (327)
T ss_dssp             CEEEEECCTTEEHHHHH
T ss_pred             cEEEEecCCCCcHHHHH
Confidence            99999999999999876

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.13  E-value=2.6e-11  Score=124.63  Aligned_cols=91  Identities=21%  Similarity=0.286  Sum_probs=70.1

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccc-ccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHF-QRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      .++|...+.||+|+||.||+|.. .+|+.||||++..... .......+.+|++++.+++||||++++++|...+..++|
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  226 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV  226 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence            45688899999999999999997 4689999999975422 122345688999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      ||||++|+|.+++
T Consensus       227 ~e~~~~~~L~~~l  239 (446)
T 4ejn_A          227 MEYANGGELFFHL  239 (446)
T ss_dssp             ECCCSSCBHHHHH
T ss_pred             EeeCCCCcHHHHH
Confidence            9999999998875

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.13  E-value=9.2e-11  Score=113.32  Aligned_cols=91  Identities=25%  Similarity=0.348  Sum_probs=77.2

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-------cccHHHHHHHHHHHhcCC-CCCcceEEEEEEe
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-------RANSESFSEIVQNISRIR-HTNIAELVGFCSE  474 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-------~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~  474 (495)
                      .++|...+.||+|+||.||+|... +|+.||||.+......       ....+.+.+|++++.+++ ||||+++++++..
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   95 (298)
T 1phk_A           16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   95 (298)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence            356788899999999999999984 6889999999654210       112456889999999996 9999999999999


Q ss_pred             CCEEEEEEEecCCCCHhhhh
Q 040888          475 QGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       475 ~~~~~lv~ey~~~GsL~~~L  494 (495)
                      .+..++||||+++|+|.+++
T Consensus        96 ~~~~~lv~e~~~~~~L~~~l  115 (298)
T 1phk_A           96 NTFFFLVFDLMKKGELFDYL  115 (298)
T ss_dssp             SSEEEEEEECCTTCBHHHHH
T ss_pred             CCeEEEEEeccCCCcHHHHH
Confidence            99999999999999999876

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.13  E-value=8.8e-11  Score=115.81  Aligned_cols=91  Identities=20%  Similarity=0.353  Sum_probs=78.0

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      .++|...+.||+|+||.||++... +++.||+|.+...... ....+.+.+|++++.+++||||+++++++...+..++|
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  119 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV  119 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence            356778899999999999999985 5889999998754321 22356789999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+++|+|.+++
T Consensus       120 ~e~~~~~~L~~~~  132 (335)
T 2owb_A          120 LELCRRRSLLELH  132 (335)
T ss_dssp             ECCCTTCBHHHHH
T ss_pred             EecCCCCCHHHHH
Confidence            9999999998865

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.13  E-value=4.7e-11  Score=115.16  Aligned_cols=89  Identities=21%  Similarity=0.368  Sum_probs=71.7

Q ss_pred             cCCcccc-eeccCCceEEEEEEc---CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEE
Q 040888          405 ANFATGR-LLGEGTIGRVYRAKY---PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       405 ~~f~~~~-~iG~G~~g~Vy~~~~---~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~l  480 (495)
                      ++|.... .||+|+||.||+|.+   .+++.||||.+..........++|.+|++++.+++||||+++++++ ..+..++
T Consensus        16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~l   94 (291)
T 1xbb_A           16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWML   94 (291)
T ss_dssp             GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEEE
T ss_pred             hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcEE
Confidence            4555566 899999999999965   3477899999976543233357899999999999999999999999 5667899


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+++|+|.+++
T Consensus        95 v~e~~~~~~L~~~l  108 (291)
T 1xbb_A           95 VMEMAELGPLNKYL  108 (291)
T ss_dssp             EEECCTTEEHHHHH
T ss_pred             EEEeCCCCCHHHHH
Confidence            99999999999876

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.13  E-value=6.7e-11  Score=117.59  Aligned_cols=91  Identities=16%  Similarity=0.242  Sum_probs=78.2

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccc-ccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHF-QRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~l  480 (495)
                      .++|...+.||+|+||.||+|+.. +++.||||++..... .....+.+..|.+++..+ +||+|+++++++...+..++
T Consensus        19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l   98 (353)
T 2i0e_A           19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF   98 (353)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEE
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEE
Confidence            467888999999999999999985 488999999976432 122356788999999988 89999999999999999999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+++|+|.+++
T Consensus        99 v~E~~~gg~L~~~l  112 (353)
T 2i0e_A           99 VMEYVNGGDLMYHI  112 (353)
T ss_dssp             EEECCCSCBHHHHH
T ss_pred             EEeCCCCCcHHHHH
Confidence            99999999999876

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.13  E-value=1e-10  Score=114.81  Aligned_cols=88  Identities=24%  Similarity=0.403  Sum_probs=74.8

Q ss_pred             cCCcccceeccCCceEEEEEEc-----CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe--CCE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-----PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE--QGH  477 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~--~~~  477 (495)
                      ++|...+.||+|+||.||+|++     .+++.||||++.....  ...+.+.+|++++.+++||||+++++++..  ...
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~  100 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGP--DQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQS  100 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCH--HHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCE
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCH--HHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCce
Confidence            4577789999999999999984     3588999999976432  235679999999999999999999999974  456


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++||||+++|+|.+++
T Consensus       101 ~~lv~e~~~~~~L~~~l  117 (327)
T 3lxl_A          101 LRLVMEYLPSGCLRDFL  117 (327)
T ss_dssp             EEEEEECCTTCBHHHHH
T ss_pred             EEEEEeecCCCCHHHHH
Confidence            88999999999999876

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.12  E-value=8.9e-11  Score=125.80  Aligned_cols=83  Identities=22%  Similarity=0.406  Sum_probs=70.8

Q ss_pred             ceeccCCceEEEEEEcC---CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          411 RLLGEGTIGRVYRAKYP---DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      +.||+|+||.||+|.+.   .++.||||+++.........++|.+|++++.+++|||||+++++|.. +..++|||||++
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~  453 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL  453 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence            57999999999999762   46789999997654433346789999999999999999999999964 557899999999


Q ss_pred             CCHhhhh
Q 040888          488 GSLHEFL  494 (495)
Q Consensus       488 GsL~~~L  494 (495)
                      |+|.+++
T Consensus       454 g~L~~~l  460 (635)
T 4fl3_A          454 GPLNKYL  460 (635)
T ss_dssp             EEHHHHH
T ss_pred             CCHHHHH
Confidence            9999886

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.12  E-value=4.5e-11  Score=117.14  Aligned_cols=97  Identities=23%  Similarity=0.455  Sum_probs=80.9

Q ss_pred             ccHHHHHHhccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEE
Q 040888          395 FSMADLLTATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFC  472 (495)
Q Consensus       395 ~~~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~  472 (495)
                      +++.++....+.|...+.||+|+||.||+|.. .+++.||||++....   ...+.+.+|++++.++ +||||+++++++
T Consensus        14 ~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~---~~~~~~~~e~~~l~~l~~h~~i~~~~~~~   90 (326)
T 2x7f_A           14 IDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG---DEEEEIKQEINMLKKYSHHRNIATYYGAF   90 (326)
T ss_dssp             --CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS---STTHHHHHHHHHHHHHCCSTTBCCEEEEE
T ss_pred             ccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc---ccHHHHHHHHHHHHhccCCCCeeeeeeEE
Confidence            34445555678899999999999999999998 568999999986543   2256789999999998 899999999999


Q ss_pred             Ee------CCEEEEEEEecCCCCHhhhh
Q 040888          473 SE------QGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       473 ~~------~~~~~lv~ey~~~GsL~~~L  494 (495)
                      ..      .+..++||||+++|+|.+++
T Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l  118 (326)
T 2x7f_A           91 IKKNPPGMDDQLWLVMEFCGAGSVTDLI  118 (326)
T ss_dssp             EECC--CCCCEEEEEEECCTTEEHHHHH
T ss_pred             eeccCccccceEEEEEEcCCCCcHHHHH
Confidence            87      46789999999999999876

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.12  E-value=3.3e-11  Score=116.61  Aligned_cols=90  Identities=18%  Similarity=0.296  Sum_probs=63.4

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .++|...+.||+|+||.||+|... +++.||||++...... ...+++.+|++++.+++||||+++++++...+..++||
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   92 (303)
T 2vwi_A           14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQ-TSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVM   92 (303)
T ss_dssp             CCCCEEEEECC---CCCEEEEEC----CEEEEECCC-----------------CCCCCCCTTBCCEEEEEESSSCEEEEE
T ss_pred             hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcc-hhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEe
Confidence            467888899999999999999974 6899999998754322 23467889999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        93 e~~~~~~L~~~l  104 (303)
T 2vwi_A           93 KLLSGGSVLDII  104 (303)
T ss_dssp             ECCTTCBHHHHH
T ss_pred             hhccCCchHHHH
Confidence            999999998875

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.12  E-value=3.3e-11  Score=117.52  Aligned_cols=95  Identities=24%  Similarity=0.475  Sum_probs=73.2

Q ss_pred             HHHhccCCcccceeccCCceEEEEEEcC----CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC
Q 040888          400 LLTATANFATGRLLGEGTIGRVYRAKYP----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ  475 (495)
Q Consensus       400 ~~~~t~~f~~~~~iG~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~  475 (495)
                      +....++|...+.||+|+||.||+|...    .+..||||.+..........+.|.+|++++.+++||||+++++++...
T Consensus        29 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  108 (313)
T 3brb_A           29 VVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEM  108 (313)
T ss_dssp             TBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-
T ss_pred             cccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeec
Confidence            3344567888899999999999999863    345899999976543333356799999999999999999999999875


Q ss_pred             CE-----EEEEEEecCCCCHhhhh
Q 040888          476 GH-----NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       476 ~~-----~~lv~ey~~~GsL~~~L  494 (495)
                      +.     .++|+||+++|+|.+++
T Consensus       109 ~~~~~~~~~~v~e~~~~~~L~~~l  132 (313)
T 3brb_A          109 SSQGIPKPMVILPFMKYGDLHTYL  132 (313)
T ss_dssp             ------CEEEEEECCTTCBHHHHH
T ss_pred             cccCCcccEEEEecccCCCHHHHH
Confidence            53     48999999999999876

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.12  E-value=7.9e-11  Score=125.79  Aligned_cols=82  Identities=26%  Similarity=0.446  Sum_probs=70.4

Q ss_pred             eeccCCceEEEEEEcC---CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCCC
Q 040888          412 LLGEGTIGRVYRAKYP---DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNG  488 (495)
Q Consensus       412 ~iG~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~G  488 (495)
                      .||+|+||.||+|.+.   ++..||||+++.... ....++|.+|+++|.+++|||||+++++|.. +..++|||||++|
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~-~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g  420 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTE-KADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGG  420 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCS-STTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTC
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCC-hHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCC
Confidence            7999999999999873   466899999976532 2346789999999999999999999999976 5689999999999


Q ss_pred             CHhhhhC
Q 040888          489 SLHEFLH  495 (495)
Q Consensus       489 sL~~~L~  495 (495)
                      +|.++++
T Consensus       421 ~L~~~l~  427 (613)
T 2ozo_A          421 PLHKFLV  427 (613)
T ss_dssp             BHHHHHT
T ss_pred             cHHHHHh
Confidence            9999873

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.12  E-value=7e-11  Score=114.18  Aligned_cols=88  Identities=22%  Similarity=0.407  Sum_probs=75.1

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe--------
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE--------  474 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~--------  474 (495)
                      .++|...+.||+|+||.||+|+. .+++.||||++....   ...+.+.+|++++.+++||||++++++|..        
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   81 (303)
T 1zy4_A            5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTE---EKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPM   81 (303)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEH---HHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC--
T ss_pred             cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccH---HHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhh
Confidence            35678889999999999999997 479999999996432   235678999999999999999999999865        


Q ss_pred             -----CCEEEEEEEecCCCCHhhhh
Q 040888          475 -----QGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       475 -----~~~~~lv~ey~~~GsL~~~L  494 (495)
                           .+..++||||+++|+|.+++
T Consensus        82 ~~~~~~~~~~lv~e~~~~~~L~~~l  106 (303)
T 1zy4_A           82 TAVKKKSTLFIQMEYCENGTLYDLI  106 (303)
T ss_dssp             ----CEEEEEEEEECCCSCBHHHHH
T ss_pred             cccccCCceEEEEecCCCCCHHHhh
Confidence                 34678999999999999876

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.12  E-value=4.7e-11  Score=119.66  Aligned_cols=91  Identities=18%  Similarity=0.301  Sum_probs=69.3

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHHHHHH-HhcCCCCCcceEEEEEEeCCEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSEIVQN-ISRIRHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~e~~~-l~~l~H~niv~l~g~~~~~~~~~l  480 (495)
                      .++|...+.||+|+||.||+|+.. +++.||||++....... ...+.+.+|..+ +..++|||||++++++...+..++
T Consensus        37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l  116 (373)
T 2r5t_A           37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF  116 (373)
T ss_dssp             GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence            356888999999999999999985 58899999997654321 223456677766 577899999999999999999999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+++|+|.+++
T Consensus       117 v~E~~~gg~L~~~l  130 (373)
T 2r5t_A          117 VLDYINGGELFYHL  130 (373)
T ss_dssp             EEECCCSCBHHHHH
T ss_pred             EEeCCCCCcHHHHH
Confidence            99999999998876

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.12  E-value=1.2e-10  Score=112.63  Aligned_cols=86  Identities=26%  Similarity=0.400  Sum_probs=70.7

Q ss_pred             ccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhc--CCCCCcceEEEEEEeC----CE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISR--IRHTNIAELVGFCSEQ----GH  477 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~--l~H~niv~l~g~~~~~----~~  477 (495)
                      .++|...+.||+|+||.||+|+. +++.||||++....     .+.+.+|.+++..  ++||||+++++++...    ..
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~-----~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~   80 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSRD-----EKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQ   80 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGGG-----HHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEE
T ss_pred             cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEecccc-----chhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCce
Confidence            35678889999999999999998 68899999986532     3556667777666  8999999999998653    45


Q ss_pred             EEEEEEecCCCCHhhhhC
Q 040888          478 NILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L~  495 (495)
                      .++||||+++|+|.++++
T Consensus        81 ~~lv~e~~~~g~L~~~l~   98 (301)
T 3q4u_A           81 LWLITHYHEMGSLYDYLQ   98 (301)
T ss_dssp             EEEEECCCTTCBHHHHHT
T ss_pred             eEEehhhccCCCHHHHHh
Confidence            789999999999999864

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.12  E-value=8.4e-11  Score=115.55  Aligned_cols=91  Identities=14%  Similarity=0.193  Sum_probs=77.5

Q ss_pred             ccCCccc-ceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEE
Q 040888          404 TANFATG-RLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       404 t~~f~~~-~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~l  480 (495)
                      .+.|... +.||+|+||.||+|... +++.||||++..........+.+.+|+.++.++ +||||+++++++...+..++
T Consensus        27 ~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~l  106 (327)
T 3lm5_A           27 NNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIIL  106 (327)
T ss_dssp             HHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEE
Confidence            3445554 88999999999999985 699999999986544334467899999999999 46999999999999999999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+++|+|.+++
T Consensus       107 v~e~~~~~~L~~~~  120 (327)
T 3lm5_A          107 ILEYAAGGEIFSLC  120 (327)
T ss_dssp             EEECCTTEEGGGGG
T ss_pred             EEEecCCCcHHHHH
Confidence            99999999998876

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.12  E-value=1.3e-10  Score=113.33  Aligned_cols=87  Identities=18%  Similarity=0.376  Sum_probs=72.5

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .+.|...+.||+|+||.||+|... +|+.||||.+....    ..+.+.+|++++.+++||||+++++++...+..++||
T Consensus        28 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~  103 (314)
T 3com_A           28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES----DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVM  103 (314)
T ss_dssp             --CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS----CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH----HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEe
Confidence            456888899999999999999985 58999999997542    2467899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus       104 e~~~~~~L~~~~  115 (314)
T 3com_A          104 EYCGAGSVSDII  115 (314)
T ss_dssp             ECCTTEEHHHHH
T ss_pred             ecCCCCCHHHHH
Confidence            999999998875

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.12  E-value=1.1e-10  Score=115.98  Aligned_cols=89  Identities=27%  Similarity=0.420  Sum_probs=75.0

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      +.|...+.||+|+||.||+|.. .+++.||||++...... ....+.|.+|++++.+++|||||+++++|..++..++||
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  133 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM  133 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence            3477789999999999999996 57899999999754322 122467899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||++ |+|.+++
T Consensus       134 e~~~-g~l~~~l  144 (348)
T 1u5q_A          134 EYCL-GSASDLL  144 (348)
T ss_dssp             ECCS-EEHHHHH
T ss_pred             ecCC-CCHHHHH
Confidence            9997 6777654

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.11  E-value=1.2e-10  Score=112.15  Aligned_cols=86  Identities=24%  Similarity=0.440  Sum_probs=71.8

Q ss_pred             Ccccc-eeccCCceEEEEEEcC---CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          407 FATGR-LLGEGTIGRVYRAKYP---DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       407 f~~~~-~iG~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      |.... .||+|+||.||+|++.   ++..||||.+..... ....+.+.+|++++.+++||||+++++++ ..+..++||
T Consensus        11 ~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv~   88 (287)
T 1u59_A           11 LLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTE-KADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLVM   88 (287)
T ss_dssp             EEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEEE
T ss_pred             hhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccc-hhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEEE
Confidence            33344 8999999999999863   577899999976432 22356799999999999999999999999 556689999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        89 e~~~~~~L~~~l  100 (287)
T 1u59_A           89 EMAGGGPLHKFL  100 (287)
T ss_dssp             ECCTTEEHHHHH
T ss_pred             EeCCCCCHHHHH
Confidence            999999999886

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.11  E-value=5.1e-11  Score=117.21  Aligned_cols=92  Identities=29%  Similarity=0.481  Sum_probs=77.9

Q ss_pred             HhccCCcccceeccCCceEEEEEEcCC------CCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEe
Q 040888          402 TATANFATGRLLGEGTIGRVYRAKYPD------GKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSE  474 (495)
Q Consensus       402 ~~t~~f~~~~~iG~G~~g~Vy~~~~~~------g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~  474 (495)
                      ...++|...+.||+|+||.||+|....      ...||+|.+..... ....+.+.+|++++.++ +||||++++++|..
T Consensus        43 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~  121 (333)
T 2i1m_A           43 FPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAH-ADEKEALMSELKIMSHLGQHENIVNLLGACTH  121 (333)
T ss_dssp             CCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCC-HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             CCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccC-hHHHHHHHHHHHHHHhhcCCCCeeeEEEEEec
Confidence            345678889999999999999998732      34899999976432 22356799999999999 89999999999999


Q ss_pred             CCEEEEEEEecCCCCHhhhh
Q 040888          475 QGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       475 ~~~~~lv~ey~~~GsL~~~L  494 (495)
                      .+..++||||+++|+|.+++
T Consensus       122 ~~~~~lv~e~~~~g~L~~~l  141 (333)
T 2i1m_A          122 GGPVLVITEYCCYGDLLNFL  141 (333)
T ss_dssp             SSSCEEEEECCTTEEHHHHH
T ss_pred             CCceEEEEecCCCCcHHHHH
Confidence            99999999999999999876

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.11  E-value=7.3e-11  Score=117.80  Aligned_cols=87  Identities=20%  Similarity=0.274  Sum_probs=74.6

Q ss_pred             hccCCcccceeccCCceEEEEEE------cCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCC---CCCcceEEEEEE
Q 040888          403 ATANFATGRLLGEGTIGRVYRAK------YPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR---HTNIAELVGFCS  473 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~------~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~---H~niv~l~g~~~  473 (495)
                      ..++|...+.||+|+||.||+|.      ..+++.||||++....     ..++.+|++++.+++   |+||+++++++.
T Consensus        63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-----~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~  137 (365)
T 3e7e_A           63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN-----PWEFYIGTQLMERLKPSMQHMFMKFYSAHL  137 (365)
T ss_dssp             SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC-----HHHHHHHHHHHHHSCGGGGGGBCCEEEEEE
T ss_pred             CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC-----hhHHHHHHHHHHHhhhhhhhhhhhhheeee
Confidence            35668888999999999999995      3468899999997532     457888888888887   999999999999


Q ss_pred             eCCEEEEEEEecCCCCHhhhh
Q 040888          474 EQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       474 ~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      ..+..++|||||++|+|.+++
T Consensus       138 ~~~~~~lv~e~~~~g~L~~~l  158 (365)
T 3e7e_A          138 FQNGSVLVGELYSYGTLLNAI  158 (365)
T ss_dssp             CSSCEEEEECCCCSCBHHHHH
T ss_pred             cCCCcEEEEeccCCCcHHHHH
Confidence            999999999999999999886

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.11  E-value=8.9e-11  Score=115.24  Aligned_cols=89  Identities=27%  Similarity=0.555  Sum_probs=73.7

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCE--EEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKV--LAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~--vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~l  480 (495)
                      ++|...+.||+|+||.||+|... ++..  ||+|.+..... ....+.+.+|++++.++ +||||+++++++...+..++
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~-~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l  103 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS-KDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL  103 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC-------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccc-hHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEE
Confidence            46777899999999999999974 4554  49999875322 22345789999999999 99999999999999999999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+++|+|.+++
T Consensus       104 v~e~~~~~~L~~~l  117 (327)
T 1fvr_A          104 AIEYAPHGNLLDFL  117 (327)
T ss_dssp             EECCCTTCBHHHHH
T ss_pred             EEecCCCCCHHHHH
Confidence            99999999999886

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.11  E-value=6.3e-11  Score=115.44  Aligned_cols=98  Identities=21%  Similarity=0.436  Sum_probs=80.4

Q ss_pred             cHHHHHHhccCCcccceeccCCceEEEEEEc------CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceE
Q 040888          396 SMADLLTATANFATGRLLGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAEL  468 (495)
Q Consensus       396 ~~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l  468 (495)
                      ...++....++|...+.||+|+||.||+|..      .+++.||||.+..... ....+.+.+|++++.++ +||||+++
T Consensus        18 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~~hp~iv~~   96 (316)
T 2xir_A           18 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT-HSEHRALMSELKILIHIGHHLNVVNL   96 (316)
T ss_dssp             CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC-HHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             cccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCC-cHHHHHHHHHHHHHHhcccCCCeeeE
Confidence            3445555667899999999999999999984      3567999999976432 22346799999999999 79999999


Q ss_pred             EEEEEeCC-EEEEEEEecCCCCHhhhh
Q 040888          469 VGFCSEQG-HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       469 ~g~~~~~~-~~~lv~ey~~~GsL~~~L  494 (495)
                      +++|...+ ..++|+||+++|+|.+++
T Consensus        97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l  123 (316)
T 2xir_A           97 LGACTKPGGPLMVIVEFCKFGNLSTYL  123 (316)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHH
T ss_pred             EEEEecCCCceEEEEEcCCCCcHHHHH
Confidence            99998754 489999999999999876

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.11  E-value=4.2e-11  Score=114.87  Aligned_cols=89  Identities=24%  Similarity=0.418  Sum_probs=73.9

Q ss_pred             ccCCcccceeccCCceEEEEEEcCC----CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPD----GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~----g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      .++|...+.||+|+||.||+|....    +..||+|.+..... ....+.|.+|+.++.+++||||+++++++. ++..+
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~   91 (281)
T 1mp8_A           14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTS-DSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW   91 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTS-HHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCE
T ss_pred             hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCC-HHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccE
Confidence            4567788999999999999998742    45799999875422 223567999999999999999999999984 55678


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +||||+++|+|.+++
T Consensus        92 lv~e~~~~~~L~~~l  106 (281)
T 1mp8_A           92 IIMELCTLGELRSFL  106 (281)
T ss_dssp             EEEECCTTEEHHHHH
T ss_pred             EEEecCCCCCHHHHH
Confidence            999999999999876

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.11  E-value=8e-11  Score=116.05  Aligned_cols=89  Identities=24%  Similarity=0.423  Sum_probs=75.0

Q ss_pred             cCCcccceeccCCceEEEEEEcCC-----CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPD-----GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~-----g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      +.|...+.||+|+||.||+|....     +..||||.+..... ......|.+|++++.+++||||+++++++...+..+
T Consensus        44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  122 (333)
T 1mqb_A           44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYT-EKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM  122 (333)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCC-HHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred             HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCC-HHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcE
Confidence            356667899999999999998742     23699999975432 223567999999999999999999999999989999


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +||||+++|+|.+++
T Consensus       123 lv~e~~~~~~L~~~l  137 (333)
T 1mqb_A          123 IITEYMENGALDKFL  137 (333)
T ss_dssp             EEEECCTTEEHHHHH
T ss_pred             EEEeCCCCCcHHHHH
Confidence            999999999999876

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.10  E-value=7.6e-11  Score=117.42  Aligned_cols=98  Identities=16%  Similarity=0.255  Sum_probs=81.2

Q ss_pred             cHHHHHHhccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCccccc---------ccHHHHHHHHHHHhcCCCCCcc
Q 040888          396 SMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQR---------ANSESFSEIVQNISRIRHTNIA  466 (495)
Q Consensus       396 ~~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~---------~~~~~f~~e~~~l~~l~H~niv  466 (495)
                      ...++....++|...+.||+|+||.||+|...+|..||||++.......         ...+.+.+|++++.+++||||+
T Consensus        13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv   92 (362)
T 3pg1_A           13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL   92 (362)
T ss_dssp             HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence            3577788889999999999999999999999889999999986532211         1136799999999999999999


Q ss_pred             eEEEEEEeC-----CEEEEEEEecCCCCHhhhh
Q 040888          467 ELVGFCSEQ-----GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       467 ~l~g~~~~~-----~~~~lv~ey~~~GsL~~~L  494 (495)
                      ++++++...     ...++||||++ |+|.+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~  124 (362)
T 3pg1_A           93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVI  124 (362)
T ss_dssp             CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHH
T ss_pred             ceeeeEEeccCCCcceEEEEEccCC-CCHHHHH
Confidence            999999653     35799999998 6787764

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.10  E-value=8.2e-11  Score=114.82  Aligned_cols=89  Identities=22%  Similarity=0.365  Sum_probs=73.2

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe----CCEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE----QGHN  478 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~----~~~~  478 (495)
                      .++|...+.||+|+||.||++.. .+++.||||++....  ....+.+.+|++++.+++||||+++++++..    ....
T Consensus        28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~  105 (317)
T 2buj_A           28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHE--QQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEA  105 (317)
T ss_dssp             TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESS--HHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEE
T ss_pred             CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCC--HHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCcee
Confidence            34677889999999999999997 578999999986532  2235679999999999999999999999973    3467


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++|+||+++|+|.+++
T Consensus       106 ~lv~e~~~~~~L~~~l  121 (317)
T 2buj_A          106 WLLLPFFKRGTLWNEI  121 (317)
T ss_dssp             EEEEECCTTCBHHHHH
T ss_pred             EEEEEeCCCCcHHHHH
Confidence            8999999999998876

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.10  E-value=1.8e-10  Score=115.00  Aligned_cols=94  Identities=19%  Similarity=0.329  Sum_probs=79.2

Q ss_pred             HHhccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc------cccHHHHHHHHHHHhcC-CCCCcceEEEEE
Q 040888          401 LTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ------RANSESFSEIVQNISRI-RHTNIAELVGFC  472 (495)
Q Consensus       401 ~~~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~------~~~~~~f~~e~~~l~~l-~H~niv~l~g~~  472 (495)
                      ....++|...+.||+|+||.||+|... +|+.||||+++.....      ....+.+.+|++++.++ +||||+++++++
T Consensus        90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  169 (365)
T 2y7j_A           90 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSY  169 (365)
T ss_dssp             HHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             hhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence            344567888899999999999999985 6999999998754311      01135688999999999 899999999999


Q ss_pred             EeCCEEEEEEEecCCCCHhhhh
Q 040888          473 SEQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       473 ~~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      ......++||||+++|+|.+++
T Consensus       170 ~~~~~~~lv~e~~~g~~L~~~l  191 (365)
T 2y7j_A          170 ESSSFMFLVFDLMRKGELFDYL  191 (365)
T ss_dssp             EBSSEEEEEECCCTTCBHHHHH
T ss_pred             eeCCEEEEEEEeCCCCcHHHHH
Confidence            9999999999999999998875

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.10  E-value=6.3e-11  Score=117.90  Aligned_cols=91  Identities=24%  Similarity=0.349  Sum_probs=77.4

Q ss_pred             ccCCcccceeccCCceEEEEEEc----CCCCEEEEEEecCcccc--cccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCC
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY----PDGKVLAVKKIDSSHFQ--RANSESFSEIVQNISRI-RHTNIAELVGFCSEQG  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~----~~g~~vavK~l~~~~~~--~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~  476 (495)
                      .++|...+.||+|+||.||+|+.    .+++.||||+++.....  ....+.+.+|++++.++ +||||+++++++...+
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  132 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  132 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence            35788899999999999999987    36899999999754321  12245678899999999 6999999999999999


Q ss_pred             EEEEEEEecCCCCHhhhh
Q 040888          477 HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L  494 (495)
                      ..++||||+++|+|.+++
T Consensus       133 ~~~lv~e~~~~~~L~~~l  150 (355)
T 1vzo_A          133 KLHLILDYINGGELFTHL  150 (355)
T ss_dssp             EEEEEECCCCSCBHHHHH
T ss_pred             eEEEEeecCCCCCHHHHH
Confidence            999999999999999876

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.10  E-value=8e-11  Score=115.34  Aligned_cols=89  Identities=18%  Similarity=0.330  Sum_probs=71.7

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc------cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ------RANSESFSEIVQNISRIRHTNIAELVGFCSEQGH  477 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~------~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  477 (495)
                      ++|...+.||+|+||.||+|... +++.||||.+......      ......+.+|++++.+++||||+++++++..++ 
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-   88 (322)
T 2ycf_A           10 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED-   88 (322)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS-
T ss_pred             hceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc-
Confidence            46788899999999999999974 5889999999754321      112345889999999999999999999987655 


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++||||+++|+|.+++
T Consensus        89 ~~lv~e~~~~~~L~~~~  105 (322)
T 2ycf_A           89 YYIVLELMEGGELFDKV  105 (322)
T ss_dssp             EEEEEECCTTEETHHHH
T ss_pred             eEEEEecCCCCcHHHHH
Confidence            79999999999998875

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.10  E-value=1.3e-10  Score=114.94  Aligned_cols=89  Identities=12%  Similarity=0.285  Sum_probs=76.7

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCC--CCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRH--TNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H--~niv~l~g~~~~~~~~~lv~  482 (495)
                      +.|...+.||+|+||.||++...+++.||||++..........+.|.+|++++.+++|  +||+++++++..++..++||
T Consensus         9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~   88 (343)
T 3dbq_A            9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM   88 (343)
T ss_dssp             CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEE
Confidence            3477789999999999999999889999999997654333335779999999999987  99999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      || .+|+|.+++
T Consensus        89 e~-~~~~L~~~l   99 (343)
T 3dbq_A           89 EC-GNIDLNSWL   99 (343)
T ss_dssp             CC-CSEEHHHHH
T ss_pred             eC-CCCCHHHHH
Confidence            95 578998876

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.10  E-value=1.1e-10  Score=112.41  Aligned_cols=87  Identities=23%  Similarity=0.445  Sum_probs=72.9

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      ++|...+.||+|+||.||+|+...  .||||++..........+.|.+|++++.+++||||+++++++ ..+..++||||
T Consensus        24 ~~y~~~~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e~  100 (289)
T 3og7_A           24 GQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQW  100 (289)
T ss_dssp             TSCEEEEEEEECSSEEEEEEESSS--EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEEC
T ss_pred             cceeeeeEecCCCCeEEEEEEEcC--ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEEe
Confidence            457778999999999999998753  599999976544333457799999999999999999999976 45567899999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus       101 ~~~~~L~~~l  110 (289)
T 3og7_A          101 CEGSSLYHHL  110 (289)
T ss_dssp             CCEEEHHHHH
T ss_pred             cCCCcHHHHH
Confidence            9999998876

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.09  E-value=5.4e-11  Score=117.80  Aligned_cols=85  Identities=21%  Similarity=0.264  Sum_probs=73.1

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv  481 (495)
                      .++|...+.||+|+||.||+|... +++.||||.+.....      .+.+|++++.++ +|||||++++++.+.+..++|
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv   94 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR------DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVV   94 (342)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC------CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEE
T ss_pred             cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC------ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEE
Confidence            456888899999999999999985 588999999975432      235688888887 799999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+++|+|.+++
T Consensus        95 ~E~~~gg~L~~~i  107 (342)
T 2qr7_A           95 TELMKGGELLDKI  107 (342)
T ss_dssp             ECCCCSCBHHHHH
T ss_pred             EeCCCCCcHHHHH
Confidence            9999999998875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.09  E-value=5.5e-12  Score=126.26  Aligned_cols=134  Identities=20%  Similarity=0.233  Sum_probs=106.1

Q ss_pred             CCEeEEEcCCCCCcccccccc-CCCCCCcEEECcCCCCCCCCCCCC-------CCCCcEEECcCCcCCC----Ccchhcc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQL-TNLKSVSYLDVSNNNLKDSIPYQL-------PPNLKHLDLSENQFSG----TVPYSIS  136 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~-~~l~~L~~L~Ls~N~l~g~~p~~~-------~~~L~~L~Ls~N~l~g----~~p~~~~  136 (495)
                      ..++.|+|++|.++......+ ..+++|+.|||++|.++......+       .++|+.|+|++|.|+.    .++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            589999999999986543333 345689999999999975322221       2789999999999975    3555668


Q ss_pred             CCCCCcEEEcccCcCCCc----cchhhhCCCCCcEEEccCCcCCCc----CcccccCCCCCCEEeccCCccccc
Q 040888          137 QMSELKYLNLGSNQLNGQ----LSDMFQKNEKLETLDLSKNQLTGE----LPRSFASLSSLKKLYLQNNQFTGS  202 (495)
Q Consensus       137 ~l~~L~~L~L~~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~g~  202 (495)
                      .+++|++|+|++|.|+..    ++..+..+++|+.|+|++|.|+..    ++..+...++|++|+|++|.|+..
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            899999999999999753    466778888999999999999863    445566778999999999999854

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.09  E-value=1e-10  Score=116.43  Aligned_cols=97  Identities=26%  Similarity=0.307  Sum_probs=81.7

Q ss_pred             cccHHHHHHhccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-----CCCcce
Q 040888          394 PFSMADLLTATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-----HTNIAE  467 (495)
Q Consensus       394 ~~~~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-----H~niv~  467 (495)
                      .+++.+.....++|...+.||+|+||.||+|+. .+++.||||++....   ...+.+..|++++.+++     |||||+
T Consensus        24 ~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~e~~~l~~l~~~~~~h~~iv~  100 (360)
T 3llt_A           24 HFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIK---KYTRSAKIEADILKKIQNDDINNNNIVK  100 (360)
T ss_dssp             SCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCH---HHHHHHHHHHHHHHHTCCCSTTGGGBCC
T ss_pred             eeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccch---hhhhhhHHHHHHHHHhcccCCCCCCeec
Confidence            344555555677899999999999999999998 568999999997532   22456788999999986     999999


Q ss_pred             EEEEEEeCCEEEEEEEecCCCCHhhhh
Q 040888          468 LVGFCSEQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       468 l~g~~~~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      +++++...+..++||||+ +|+|.+++
T Consensus       101 ~~~~~~~~~~~~lv~e~~-~~~L~~~~  126 (360)
T 3llt_A          101 YHGKFMYYDHMCLIFEPL-GPSLYEII  126 (360)
T ss_dssp             EEEEEEETTEEEEEECCC-CCBHHHHH
T ss_pred             ccceeeECCeeEEEEcCC-CCCHHHHH
Confidence            999999999999999999 89998875

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.08  E-value=1.5e-10  Score=113.62  Aligned_cols=88  Identities=31%  Similarity=0.566  Sum_probs=73.6

Q ss_pred             cCCcccceeccCCceEEEEEEc-----CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC--E
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-----PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG--H  477 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~--~  477 (495)
                      ++|...+.||+|+||.||+|.+     .+++.||||++....  ....+.|.+|++++.+++||||+++++++...+  .
T Consensus        41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  118 (326)
T 2w1i_A           41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST--EEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN  118 (326)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCC--SHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----C
T ss_pred             HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCC--HHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCc
Confidence            4577789999999999999984     358899999997643  223568999999999999999999999987644  5


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++|+||+++|+|.+++
T Consensus       119 ~~lv~e~~~~~~L~~~l  135 (326)
T 2w1i_A          119 LKLIMEYLPYGSLRDYL  135 (326)
T ss_dssp             CEEEECCCTTCBHHHHH
T ss_pred             eEEEEECCCCCCHHHHH
Confidence            78999999999999876

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.08  E-value=1.7e-10  Score=116.24  Aligned_cols=88  Identities=13%  Similarity=0.286  Sum_probs=76.2

Q ss_pred             CCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCC--CCCcceEEEEEEeCCEEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR--HTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~--H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      .|...+.||+|+||.||+|...+++.||||++..........+.|.+|++++.+++  |||||++++++...+..++|||
T Consensus        57 ~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~E  136 (390)
T 2zmd_A           57 IYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME  136 (390)
T ss_dssp             EEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEE
T ss_pred             ceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEEe
Confidence            47788999999999999999988999999999765433334578999999999996  5999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                       +.+|+|.+++
T Consensus       137 -~~~~~L~~~l  146 (390)
T 2zmd_A          137 -CGNIDLNSWL  146 (390)
T ss_dssp             -CCSEEHHHHH
T ss_pred             -cCCCCHHHHH
Confidence             5688998876

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.08  E-value=1.2e-10  Score=114.49  Aligned_cols=88  Identities=19%  Similarity=0.440  Sum_probs=68.5

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCC----EEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGK----VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~----~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      ++|...+.||+|+||.||+|+.. +++    .||+|.+..... ....+.|.+|++++++++|||||+++++|.... .+
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~   92 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS-PKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ   92 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC--------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EE
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccC-HHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eE
Confidence            45777899999999999999963 444    368888864332 233578999999999999999999999998765 67


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +|+||+++|+|.+++
T Consensus        93 ~v~e~~~~g~L~~~l  107 (327)
T 3poz_A           93 LITQLMPFGCLLDYV  107 (327)
T ss_dssp             EEEECCTTCBHHHHH
T ss_pred             EEEEecCCCcHHHHH
Confidence            999999999999876

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.07  E-value=3e-10  Score=111.41  Aligned_cols=85  Identities=16%  Similarity=0.344  Sum_probs=74.8

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-CCCcceEEEEEEe--CCEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-HTNIAELVGFCSE--QGHNIL  480 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~--~~~~~l  480 (495)
                      ++|...+.||+|+||.||+|.. .+++.||||++...     ..+.+.+|++++.+++ ||||+++++++..  ....++
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~l  110 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV-----KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPAL  110 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-----CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEE
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc-----chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEE
Confidence            5678889999999999999987 56899999998743     2467899999999997 9999999999987  567899


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+++|+|.+++
T Consensus       111 v~e~~~~~~l~~~~  124 (330)
T 3nsz_A          111 VFEHVNNTDFKQLY  124 (330)
T ss_dssp             EEECCCCCCHHHHG
T ss_pred             EEeccCchhHHHHH
Confidence            99999999998875

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.07  E-value=1.1e-10  Score=111.68  Aligned_cols=84  Identities=24%  Similarity=0.507  Sum_probs=72.3

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe---------
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE---------  474 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~---------  474 (495)
                      .+|...+.||+|+||.||+|... +++.||+|++....      +.+.+|++++.+++||||+++++++..         
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   84 (284)
T 2a19_B           11 MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN------EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS   84 (284)
T ss_dssp             HHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS------GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred             cccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc------HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence            45778899999999999999985 79999999986532      356789999999999999999999864         


Q ss_pred             -------CCEEEEEEEecCCCCHhhhh
Q 040888          475 -------QGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       475 -------~~~~~lv~ey~~~GsL~~~L  494 (495)
                             ....++||||+++|+|.+++
T Consensus        85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l  111 (284)
T 2a19_B           85 KNSSRSKTKCLFIQMEFCDKGTLEQWI  111 (284)
T ss_dssp             ----CCEEEEEEEEECCCCSCBHHHHH
T ss_pred             ccccccCcceEEEEEeccCCCCHHHHH
Confidence                   34578999999999999886

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.07  E-value=6.8e-11  Score=116.68  Aligned_cols=91  Identities=24%  Similarity=0.372  Sum_probs=76.6

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc------ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR------ANSESFSEIVQNISRIRHTNIAELVGFCSEQG  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~------~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~  476 (495)
                      .++|...+.||+|+||.||+|.. .+++.||||++.......      ...+.+.+|++++.+++||||+++++++...+
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~  102 (335)
T 3dls_A           23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG  102 (335)
T ss_dssp             HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred             ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence            45788889999999999999986 568899999997653211      12345778999999999999999999999999


Q ss_pred             EEEEEEEecCCC-CHhhhh
Q 040888          477 HNILIYDYYRNG-SLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~G-sL~~~L  494 (495)
                      ..++||||+.+| +|.+++
T Consensus       103 ~~~lv~e~~~~g~~l~~~~  121 (335)
T 3dls_A          103 FFQLVMEKHGSGLDLFAFI  121 (335)
T ss_dssp             EEEEEEECCTTSCBHHHHH
T ss_pred             EEEEEEEeCCCCccHHHHH
Confidence            999999999887 888765

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.06  E-value=1.2e-10  Score=111.44  Aligned_cols=86  Identities=27%  Similarity=0.530  Sum_probs=72.9

Q ss_pred             ccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC-CEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ-GHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~-~~~~lv~  482 (495)
                      .++|...+.||+|+||.||+|.. .|+.||||.+....    ..+.|.+|++++.+++||||+++++++... +..++||
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~----~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~   94 (278)
T 1byg_A           20 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVT   94 (278)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC------HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEE
T ss_pred             hhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchh----HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEE
Confidence            35677889999999999999988 48899999997542    256799999999999999999999998654 4679999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        95 e~~~~~~L~~~l  106 (278)
T 1byg_A           95 EYMAKGSLVDYL  106 (278)
T ss_dssp             CCCTTEEHHHHH
T ss_pred             ecCCCCCHHHHH
Confidence            999999999876

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.06  E-value=1.8e-10  Score=110.67  Aligned_cols=90  Identities=18%  Similarity=0.306  Sum_probs=71.0

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .++|...+.||+|+||.||+|.. .+|+.||||++..........+.+.++...++.++||||+++++++..++..++||
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~   85 (290)
T 3fme_A            6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM   85 (290)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred             HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence            35677889999999999999997 57899999999765332222344555666688899999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||++ |+|.+++
T Consensus        86 e~~~-~~l~~~l   96 (290)
T 3fme_A           86 ELMD-TSLDKFY   96 (290)
T ss_dssp             ECCS-EEHHHHH
T ss_pred             ehhc-cchHHHH
Confidence            9997 5876654

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.05  E-value=1.3e-10  Score=114.24  Aligned_cols=85  Identities=16%  Similarity=0.231  Sum_probs=73.8

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|.. .+++.||||.+.....    .+.+.+|++++.++ +||||+++++++...+..++||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~   84 (330)
T 2izr_A            9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR----APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVL   84 (330)
T ss_dssp             TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS----SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEE
T ss_pred             CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc----hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEE
Confidence            4677889999999999999996 5689999999865432    24588999999999 9999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+ +|+|.+++
T Consensus        85 e~~-~~~L~~~~   95 (330)
T 2izr_A           85 ELL-GPSLEDLF   95 (330)
T ss_dssp             ECC-CCBHHHHH
T ss_pred             EeC-CCCHHHHH
Confidence            999 99999875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.05  E-value=1.6e-11  Score=130.52  Aligned_cols=155  Identities=12%  Similarity=0.083  Sum_probs=103.4

Q ss_pred             CCEeEEEcCCCCCc-cccccccCCCCCCcEEECcC-----------CCCCCCCCCCC---CCCCcEEECcCCcCCCCcch
Q 040888           69 SSVTEIKLSGLGLN-GQLGYQLTNLKSVSYLDVSN-----------NNLKDSIPYQL---PPNLKHLDLSENQFSGTVPY  133 (495)
Q Consensus        69 ~~v~~l~L~~n~l~-g~~~~~~~~l~~L~~L~Ls~-----------N~l~g~~p~~~---~~~L~~L~Ls~N~l~g~~p~  133 (495)
                      .+++.|+|. +.+. +.++..+..+++|++|+|++           |.+++.....+   .++|++|+|+.|++++..+.
T Consensus       318 ~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~  396 (592)
T 3ogk_B          318 PNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE  396 (592)
T ss_dssp             TTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHH
T ss_pred             cCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHH
Confidence            578888888 4443 34454556778888888883           55553211111   26888888888888877777


Q ss_pred             hccC-CCCCcEEEcc----cCcCCCc-----cchhhhCCCCCcEEEccCC--cCCCcCcccccC-CCCCCEEeccCCccc
Q 040888          134 SISQ-MSELKYLNLG----SNQLNGQ-----LSDMFQKNEKLETLDLSKN--QLTGELPRSFAS-LSSLKKLYLQNNQFT  200 (495)
Q Consensus       134 ~~~~-l~~L~~L~L~----~N~l~g~-----~p~~~~~l~~L~~L~ls~N--~l~g~~p~~~~~-l~~L~~L~l~~N~l~  200 (495)
                      .+.. +++|+.|+|+    .|.+++.     ++..+.++++|+.|+|+.+  .+++..+..+.. +++|+.|+|++|+++
T Consensus       397 ~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~  476 (592)
T 3ogk_B          397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES  476 (592)
T ss_dssp             HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS
T ss_pred             HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC
Confidence            7665 7888888885    6777763     4555677788888888743  366555555443 777888888888877


Q ss_pred             ccc--cccCCcc-CcEEEeecCCCccc
Q 040888          201 GSI--NVLGKLP-LDELNVENNKFSGW  224 (495)
Q Consensus       201 g~~--~~~~~~~-L~~l~l~~N~l~g~  224 (495)
                      +..  ..+..++ |+.|++++|.+++.
T Consensus       477 ~~~~~~~~~~~~~L~~L~l~~n~l~~~  503 (592)
T 3ogk_B          477 DEGLMEFSRGCPNLQKLEMRGCCFSER  503 (592)
T ss_dssp             HHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred             HHHHHHHHhcCcccCeeeccCCCCcHH
Confidence            532  3334445 88888888887654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.05  E-value=3.6e-10  Score=111.19  Aligned_cols=161  Identities=15%  Similarity=0.156  Sum_probs=101.4

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcC-------C-----------
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQF-------S-----------  128 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l-------~-----------  128 (495)
                      .+++.|+|++ +++..-+..|.+|++|+.|+|++|.+...-+..+.  .++..+.++.+..       .           
T Consensus       101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~  179 (329)
T 3sb4_A          101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE  179 (329)
T ss_dssp             TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred             CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence            5677777777 77666566777788888888887776632222332  2333333333110       0           


Q ss_pred             --------CCcchhc----------------------------cCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccC
Q 040888          129 --------GTVPYSI----------------------------SQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSK  172 (495)
Q Consensus       129 --------g~~p~~~----------------------------~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~  172 (495)
                              +.++..+                            ..+++|+.|+|++|+++...+..|.++.+|+.|+|++
T Consensus       180 ~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~  259 (329)
T 3sb4_A          180 TTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH  259 (329)
T ss_dssp             EEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT
T ss_pred             eeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc
Confidence                    0111100                            0267888888888888866667788888888888888


Q ss_pred             CcCCCcCcccccCCCCCC-EEeccCCcccccc-cccCCcc-CcEEEeecCCCcccCchhhhhc
Q 040888          173 NQLTGELPRSFASLSSLK-KLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVPEELKDI  232 (495)
Q Consensus       173 N~l~g~~p~~~~~l~~L~-~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~~p~~l~~l  232 (495)
                      | ++..-+..|.++.+|+ .+++.+ +++... ..+..++ |+.+++++|.++..-+..|.++
T Consensus       260 n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~  320 (329)
T 3sb4_A          260 N-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG  320 (329)
T ss_dssp             T-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred             c-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence            7 7656666788888888 888877 555433 4555555 8888888887775555455443

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.05  E-value=1.7e-10  Score=118.05  Aligned_cols=90  Identities=18%  Similarity=0.304  Sum_probs=75.7

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC-----CE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ-----GH  477 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~-----~~  477 (495)
                      .++|...+.||+|+||.||+|... +++.||||++..........+.+.+|++++.+++|||||++++++...     +.
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  104 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE  104 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence            457888899999999999999974 588999999976433333356899999999999999999999999776     56


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++|||||+ |+|.+++
T Consensus       105 ~~lv~e~~~-~~L~~~~  120 (432)
T 3n9x_A          105 LYIVLEIAD-SDLKKLF  120 (432)
T ss_dssp             EEEEEECCS-EEHHHHH
T ss_pred             EEEEEecCC-cCHHHHH
Confidence            899999997 5898775

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.05  E-value=2.1e-10  Score=115.43  Aligned_cols=90  Identities=23%  Similarity=0.416  Sum_probs=67.3

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-CCCcceEEEEEEeCC--EEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-HTNIAELVGFCSEQG--HNI  479 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~--~~~  479 (495)
                      .++|...+.||+|+||.||+|.. .+|+.||||++..........+.+.+|+.++.+++ |||||++++++...+  ..+
T Consensus         8 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~   87 (388)
T 3oz6_A            8 LRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVY   87 (388)
T ss_dssp             HTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEE
T ss_pred             cCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEE
Confidence            46788899999999999999987 56999999999754333334567889999999997 999999999998654  689


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +|||||+ |+|.+++
T Consensus        88 lv~e~~~-~~L~~~~  101 (388)
T 3oz6_A           88 LVFDYME-TDLHAVI  101 (388)
T ss_dssp             EEEECCS-EEHHHHH
T ss_pred             EEecccC-cCHHHHH
Confidence            9999997 6888765

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.04  E-value=5e-10  Score=110.09  Aligned_cols=87  Identities=28%  Similarity=0.416  Sum_probs=72.4

Q ss_pred             HhccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcC--CCCCcceEEEEEEeC----
Q 040888          402 TATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI--RHTNIAELVGFCSEQ----  475 (495)
Q Consensus       402 ~~t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l--~H~niv~l~g~~~~~----  475 (495)
                      ...++|...+.||+|+||.||+|+.. ++.||||++....     ...+.+|.+++...  +||||+++++++...    
T Consensus        34 ~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~-----~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~  107 (337)
T 3mdy_A           34 TIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTE-----EASWFRETEIYQTVLMRHENILGFIAADIKGTGSW  107 (337)
T ss_dssp             THHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGG-----HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGG
T ss_pred             ccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccc-----cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCC
Confidence            34567999999999999999999985 8899999985432     34455666666554  999999999999987    


Q ss_pred             CEEEEEEEecCCCCHhhhh
Q 040888          476 GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       476 ~~~~lv~ey~~~GsL~~~L  494 (495)
                      ...++||||+++|+|.+++
T Consensus       108 ~~~~lv~e~~~~g~L~~~l  126 (337)
T 3mdy_A          108 TQLYLITDYHENGSLYDYL  126 (337)
T ss_dssp             CEEEEEECCCTTCBHHHHH
T ss_pred             CceEEEEeccCCCcHHHHh
Confidence            7889999999999999886

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.04  E-value=9.7e-11  Score=117.39  Aligned_cols=87  Identities=23%  Similarity=0.444  Sum_probs=71.3

Q ss_pred             CcccceeccCCceEEEEEEcC--C--CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe-CCEEEEE
Q 040888          407 FATGRLLGEGTIGRVYRAKYP--D--GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE-QGHNILI  481 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~--~--g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~-~~~~~lv  481 (495)
                      |...+.||+|+||.||+|...  +  +..||||.+..... ....+.|.+|+.++++++|||||+++++|.. ++..++|
T Consensus        91 ~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv  169 (373)
T 3c1x_A           91 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITD-IGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV  169 (373)
T ss_dssp             EEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSC-SHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred             eecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCC-HHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence            555688999999999999873  2  24689999875322 2235789999999999999999999999865 4577899


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+++|+|.+++
T Consensus       170 ~e~~~~g~L~~~l  182 (373)
T 3c1x_A          170 LPYMKHGDLRNFI  182 (373)
T ss_dssp             EECCTTCBHHHHH
T ss_pred             EECCCCCCHHHHH
Confidence            9999999999886

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.04  E-value=5.8e-10  Score=109.90  Aligned_cols=87  Identities=28%  Similarity=0.473  Sum_probs=75.1

Q ss_pred             HhccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhc--CCCCCcceEEEEEEeCC---
Q 040888          402 TATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISR--IRHTNIAELVGFCSEQG---  476 (495)
Q Consensus       402 ~~t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~--l~H~niv~l~g~~~~~~---  476 (495)
                      ...++|...+.||+|+||.||+|+. +|+.||||++...     ..+.+.+|++++..  ++||||+++++++...+   
T Consensus        39 ~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~-----~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~  112 (342)
T 1b6c_B           39 TIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR-----EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTW  112 (342)
T ss_dssp             HHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG-----GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSC
T ss_pred             cccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch-----hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCcc
Confidence            3456789999999999999999998 5889999998643     24567888888887  79999999999998876   


Q ss_pred             -EEEEEEEecCCCCHhhhh
Q 040888          477 -HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 -~~~lv~ey~~~GsL~~~L  494 (495)
                       ..++||||+++|+|.+++
T Consensus       113 ~~~~lv~e~~~~g~L~~~l  131 (342)
T 1b6c_B          113 TQLWLVSDYHEHGSLFDYL  131 (342)
T ss_dssp             CCEEEEECCCTTCBHHHHH
T ss_pred             ceeEEEEeecCCCcHHHHH
Confidence             789999999999999886

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.04  E-value=9.4e-11  Score=117.22  Aligned_cols=90  Identities=18%  Similarity=0.269  Sum_probs=68.9

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC------
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG------  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~------  476 (495)
                      .+.|...+.||+|+||.||+|.. .+|+.||||++..........+.+.+|++++.+++||||+++++++...+      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  103 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT  103 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence            35678889999999999999997 56999999999654332233567899999999999999999999997653      


Q ss_pred             EEEEEEEecCCCCHhhhh
Q 040888          477 HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L  494 (495)
                      ..++||||| +++|.+++
T Consensus       104 ~~~lv~e~~-~~~L~~~~  120 (367)
T 1cm8_A          104 DFYLVMPFM-GTDLGKLM  120 (367)
T ss_dssp             CCEEEEECC-SEEHHHHH
T ss_pred             eEEEEEecC-CCCHHHHH
Confidence            459999999 78998775

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.04  E-value=3.4e-10  Score=112.20  Aligned_cols=88  Identities=20%  Similarity=0.457  Sum_probs=73.4

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--------
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ--------  475 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--------  475 (495)
                      ++|...+.||+|+||.||+|.. .+|+.||||++............+.+|++++.+++||||++++++|...        
T Consensus        17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   96 (351)
T 3mi9_A           17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK   96 (351)
T ss_dssp             GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------
T ss_pred             cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCC
Confidence            4677889999999999999998 5689999999976544333456788999999999999999999999873        


Q ss_pred             CEEEEEEEecCCCCHhhh
Q 040888          476 GHNILIYDYYRNGSLHEF  493 (495)
Q Consensus       476 ~~~~lv~ey~~~GsL~~~  493 (495)
                      +..++||||+++ +|.+.
T Consensus        97 ~~~~lv~e~~~~-~l~~~  113 (351)
T 3mi9_A           97 GSIYLVFDFCEH-DLAGL  113 (351)
T ss_dssp             CEEEEEEECCSE-EHHHH
T ss_pred             ceEEEEEeccCC-CHHHH
Confidence            468999999985 66554

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.04  E-value=1.5e-10  Score=119.22  Aligned_cols=90  Identities=14%  Similarity=0.310  Sum_probs=66.0

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC-----CE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ-----GH  477 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~-----~~  477 (495)
                      .++|...+.||+|+||.||+|... +++.||||++..........+.+.+|++++.+++|||||+++++|...     ..
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~  131 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE  131 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence            357888999999999999999874 689999999975433333356799999999999999999999999543     46


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++||||+. |+|.+++
T Consensus       132 ~~lv~e~~~-~~L~~~~  147 (458)
T 3rp9_A          132 LYVVLEIAD-SDFKKLF  147 (458)
T ss_dssp             EEEEECCCS-EEHHHHH
T ss_pred             EEEEEeccc-cchhhhc
Confidence            899999985 6887765

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.04  E-value=8.7e-11  Score=115.29  Aligned_cols=88  Identities=24%  Similarity=0.404  Sum_probs=71.8

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||+|... +++.||||++...... .....+.+|++++.+++||||+++++++...+..++|||
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEE-GAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFE   80 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC-------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEeccccc-ccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEec
Confidence            46778899999999999999985 6899999999754321 112245679999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |++ |+|.+++
T Consensus        81 ~~~-~~l~~~~   90 (324)
T 3mtl_A           81 YLD-KDLKQYL   90 (324)
T ss_dssp             CCS-EEHHHHH
T ss_pred             ccc-cCHHHHH
Confidence            997 5887764

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.03  E-value=4e-10  Score=109.19  Aligned_cols=89  Identities=24%  Similarity=0.402  Sum_probs=71.7

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc--cccHHHHHHHHHHHhcCCCCCcceEEEEEEe--CCEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ--RANSESFSEIVQNISRIRHTNIAELVGFCSE--QGHN  478 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~--~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~--~~~~  478 (495)
                      .++|...+.||+|+||.||+|... +++.||+|.+......  ....+.+.+|++++.+++||||+++++++..  .+..
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM   83 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence            357888999999999999999984 6889999999754321  1235679999999999999999999999953  4578


Q ss_pred             EEEEEecCCCCHhhh
Q 040888          479 ILIYDYYRNGSLHEF  493 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~  493 (495)
                      ++||||+++| |.++
T Consensus        84 ~lv~e~~~~~-l~~~   97 (305)
T 2wtk_C           84 YMVMEYCVCG-MQEM   97 (305)
T ss_dssp             EEEEECCSEE-HHHH
T ss_pred             EEEehhccCC-HHHH
Confidence            9999999876 5554

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.03  E-value=2.5e-10  Score=113.02  Aligned_cols=91  Identities=21%  Similarity=0.405  Sum_probs=70.0

Q ss_pred             hccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc---ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEE
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR---ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~---~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~  478 (495)
                      ..++|...+.||+|+||.||+|... +|+.||||++.......   ...+.+.+|++++.+++||||+++++++...+..
T Consensus         8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   87 (346)
T 1ua2_A            8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI   87 (346)
T ss_dssp             -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred             HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence            3467888999999999999999985 58999999997543211   1134688999999999999999999999999999


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++||||+++ +|.+++
T Consensus        88 ~lv~e~~~~-~l~~~~  102 (346)
T 1ua2_A           88 SLVFDFMET-DLEVII  102 (346)
T ss_dssp             EEEEECCSE-EHHHHH
T ss_pred             EEEEEcCCC-CHHHHH
Confidence            999999985 787765

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.03  E-value=3e-10  Score=108.86  Aligned_cols=89  Identities=28%  Similarity=0.480  Sum_probs=73.3

Q ss_pred             ccCCcccceeccCCceEEEEEEcCC----CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPD----GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~----g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      .++|...+.||+|+||.||+|+...    +..||||.+..... ....+.|.+|++++.+++||||+++++++.. +..+
T Consensus        11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~   88 (281)
T 3cc6_A           11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCT-LDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTW   88 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSC-HHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCE
T ss_pred             ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccC-chHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCE
Confidence            4567788999999999999998632    34699999976432 2235679999999999999999999999865 4568


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +||||+++|+|.+++
T Consensus        89 ~v~e~~~~~~L~~~l  103 (281)
T 3cc6_A           89 IIMELYPYGELGHYL  103 (281)
T ss_dssp             EEEECCTTCBHHHHH
T ss_pred             EEEecCCCCCHHHHH
Confidence            999999999999876

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.02  E-value=1.5e-10  Score=112.77  Aligned_cols=97  Identities=11%  Similarity=0.261  Sum_probs=80.8

Q ss_pred             HHHHHHhccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCC--CCCcceEEEEEEe
Q 040888          397 MADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR--HTNIAELVGFCSE  474 (495)
Q Consensus       397 ~~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~--H~niv~l~g~~~~  474 (495)
                      ++.+....++|...+.||+|+||.||++...+++.||||++..........+.+.+|++++.+++  |+||+++++++..
T Consensus        20 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~   99 (313)
T 3cek_A           20 FQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT   99 (313)
T ss_dssp             CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEEC
T ss_pred             eeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeec
Confidence            33444445678889999999999999999988999999999765433334578999999999997  5999999999999


Q ss_pred             CCEEEEEEEecCCCCHhhhh
Q 040888          475 QGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       475 ~~~~~lv~ey~~~GsL~~~L  494 (495)
                      .+..++||| +.+|+|.+++
T Consensus       100 ~~~~~lv~e-~~~~~L~~~l  118 (313)
T 3cek_A          100 DQYIYMVME-CGNIDLNSWL  118 (313)
T ss_dssp             SSEEEEEEC-CCSEEHHHHH
T ss_pred             CCEEEEEEe-cCCCcHHHHH
Confidence            999999999 5678998875

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.02  E-value=3.7e-10  Score=113.47  Aligned_cols=86  Identities=26%  Similarity=0.380  Sum_probs=68.2

Q ss_pred             HhccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC-----
Q 040888          402 TATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ-----  475 (495)
Q Consensus       402 ~~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~-----  475 (495)
                      ...++|...+.||+|+||.||+|.. .+|+.||||++.....      ...+|++++++++|||||++++++...     
T Consensus         4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~------~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~   77 (383)
T 3eb0_A            4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR------YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEP   77 (383)
T ss_dssp             --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT------SCCHHHHHHTTCCCTTBCCEEEEEEEC-----
T ss_pred             cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc------hHHHHHHHHHHcCCCCccchhheeeecCcccc
Confidence            4466788899999999999999987 5799999999865422      234799999999999999999999543     


Q ss_pred             ---------------------------------CEEEEEEEecCCCCHhhhh
Q 040888          476 ---------------------------------GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       476 ---------------------------------~~~~lv~ey~~~GsL~~~L  494 (495)
                                                       ...++||||++ |+|.+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l  128 (383)
T 3eb0_A           78 KPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVL  128 (383)
T ss_dssp             --------------------------------CCEEEEEECCCS-EEHHHHH
T ss_pred             cccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHH
Confidence                                             34789999998 5776654

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.02  E-value=4.2e-10  Score=112.64  Aligned_cols=90  Identities=16%  Similarity=0.227  Sum_probs=74.3

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC------
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG------  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~------  476 (495)
                      .++|...+.||+|+||.||+|.. .+++.||||++..........+.+.+|++++++++||||+++++++...+      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~  103 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  103 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence            35788889999999999999987 46889999999754332333567899999999999999999999997654      


Q ss_pred             EEEEEEEecCCCCHhhhh
Q 040888          477 HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L  494 (495)
                      ..++||||+++ +|.+++
T Consensus       104 ~~~lv~e~~~~-~l~~~~  120 (371)
T 2xrw_A          104 DVYIVMELMDA-NLCQVI  120 (371)
T ss_dssp             EEEEEEECCSE-EHHHHH
T ss_pred             ceEEEEEcCCC-CHHHHH
Confidence            78999999974 676654

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.02  E-value=2.8e-10  Score=109.85  Aligned_cols=87  Identities=22%  Similarity=0.366  Sum_probs=71.3

Q ss_pred             CcccceeccCCceEEEEEEcC-C---CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEE-EEE
Q 040888          407 FATGRLLGEGTIGRVYRAKYP-D---GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHN-ILI  481 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~-~---g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~-~lv  481 (495)
                      |...+.||+|+||.||+|... +   +..||+|.+..... ....+.|.+|++++++++||||+++++++...+.. ++|
T Consensus        23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v  101 (298)
T 3pls_A           23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITE-MQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL  101 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCS-HHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred             EccCceeccCCCceEEEEEEecCCCceeeeeeeecccccc-HHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence            445688999999999999863 2   33799999875432 22356799999999999999999999999876654 899


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      +||+.+|+|.+++
T Consensus       102 ~e~~~~~~L~~~~  114 (298)
T 3pls_A          102 LPYMCHGDLLQFI  114 (298)
T ss_dssp             ECCCTTCBHHHHH
T ss_pred             EecccCCCHHHHH
Confidence            9999999999876

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.01  E-value=3.6e-10  Score=110.11  Aligned_cols=87  Identities=23%  Similarity=0.290  Sum_probs=68.0

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEE----------
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCS----------  473 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~----------  473 (495)
                      ++|...+.||+|+||.||+|... +++.||||++.....  ...+.+.+|++++.+++||||+++++++.          
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   88 (320)
T 2i6l_A           11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDP--QSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDV   88 (320)
T ss_dssp             TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSH--HHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC--
T ss_pred             CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCCh--HHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccc
Confidence            46777899999999999999985 489999999875432  23567899999999999999999999884          


Q ss_pred             ----eCCEEEEEEEecCCCCHhhhh
Q 040888          474 ----EQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       474 ----~~~~~~lv~ey~~~GsL~~~L  494 (495)
                          .....++||||++ |+|.+++
T Consensus        89 ~~~~~~~~~~lv~e~~~-~~L~~~~  112 (320)
T 2i6l_A           89 GSLTELNSVYIVQEYME-TDLANVL  112 (320)
T ss_dssp             --CCSCSEEEEEEECCS-EEHHHHH
T ss_pred             ccccccCceeEEeeccC-CCHHHHh
Confidence                3467899999998 6998876

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.01  E-value=1.6e-10  Score=125.17  Aligned_cols=89  Identities=16%  Similarity=0.267  Sum_probs=73.7

Q ss_pred             cCCcccceeccCCceEEEEEEcC--CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCE-----
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP--DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGH-----  477 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~--~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~-----  477 (495)
                      ++|...+.||+|+||.||+|...  +|+.||||++..... ....+.|.+|++++.+++|||||+++++|...+.     
T Consensus        80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~  158 (681)
T 2pzi_A           80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGD-AEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV  158 (681)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCC-HHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred             CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCC-HHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence            57888999999999999999974  589999999865322 2234678999999999999999999999987654     


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++|||||++|+|.+++
T Consensus       159 ~~lv~E~~~g~~L~~~~  175 (681)
T 2pzi_A          159 GYIVMEYVGGQSLKRSK  175 (681)
T ss_dssp             EEEEEECCCCEECC---
T ss_pred             eEEEEEeCCCCcHHHHH
Confidence            69999999999998765

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.01  E-value=2.5e-10  Score=110.35  Aligned_cols=88  Identities=23%  Similarity=0.428  Sum_probs=71.7

Q ss_pred             CCcccceeccCCceEEEEEEcCC----CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe-CCEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYPD----GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE-QGHNIL  480 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~~----g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~-~~~~~l  480 (495)
                      .|...+.||+|+||.||+|...+    ...+|+|.+..... ....+.|.+|++++++++||||++++++|.. ++..++
T Consensus        26 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  104 (298)
T 3f66_A           26 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITD-IGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV  104 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCS-HHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred             ehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCC-HHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEE
Confidence            46667899999999999998742    23689999875432 2235679999999999999999999999765 456789


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+++|+|.+++
T Consensus       105 v~e~~~~~~L~~~l  118 (298)
T 3f66_A          105 VLPYMKHGDLRNFI  118 (298)
T ss_dssp             EEECCTTCBHHHHH
T ss_pred             EEeCCCCCCHHHHH
Confidence            99999999999876

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.01  E-value=4.7e-11  Score=116.60  Aligned_cols=96  Identities=21%  Similarity=0.407  Sum_probs=79.7

Q ss_pred             HHHHHhccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCE
Q 040888          398 ADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGH  477 (495)
Q Consensus       398 ~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  477 (495)
                      ++.....++|...+.||+|+||.||+|...+  .+|+|++..........+.|.+|++++.+++||||+++++++...+.
T Consensus        26 ~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  103 (319)
T 2y4i_B           26 QEWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPH  103 (319)
T ss_dssp             GGSSSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSC
T ss_pred             ccccCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCc
Confidence            3444456778889999999999999998854  48999987653322334568889999999999999999999999999


Q ss_pred             EEEEEEecCCCCHhhhhC
Q 040888          478 NILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L~  495 (495)
                      .++|+||+++|+|.++++
T Consensus       104 ~~iv~e~~~~~~L~~~l~  121 (319)
T 2y4i_B          104 LAIITSLCKGRTLYSVVR  121 (319)
T ss_dssp             EEEECBCCCSEEHHHHTT
T ss_pred             eEEEeecccCCcHHHHHH
Confidence            999999999999998863

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.01  E-value=3.3e-10  Score=116.85  Aligned_cols=89  Identities=17%  Similarity=0.232  Sum_probs=73.4

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC------C
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ------G  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~------~  476 (495)
                      .++|...+.||+|+||.||+|.. .+++.||||++..........+.+.+|+++++.++|||||++++++...      .
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  140 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ  140 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence            46788899999999999999987 4689999999976533333456789999999999999999999999654      3


Q ss_pred             EEEEEEEecCCCCHhhh
Q 040888          477 HNILIYDYYRNGSLHEF  493 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~  493 (495)
                      ..++|||||+++ |.+.
T Consensus       141 ~~~lv~E~~~~~-l~~~  156 (464)
T 3ttj_A          141 DVYLVMELMDAN-LCQV  156 (464)
T ss_dssp             EEEEEEECCSEE-HHHH
T ss_pred             eEEEEEeCCCCC-HHHH
Confidence            579999999864 5554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.01  E-value=9.4e-10  Score=108.16  Aligned_cols=145  Identities=16%  Similarity=0.191  Sum_probs=115.7

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCC----CCCCCCC--------------------------------
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNL----KDSIPYQ--------------------------------  112 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l----~g~~p~~--------------------------------  112 (495)
                      .+++.|+|++|.+....+..|.++..+..+.+..+..    ...-...                                
T Consensus       124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~  203 (329)
T 3sb4_A          124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRD  203 (329)
T ss_dssp             TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred             cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccc
Confidence            6899999999999877778888888888887766321    0000000                                


Q ss_pred             --------------------CCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCc-EEEcc
Q 040888          113 --------------------LPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLE-TLDLS  171 (495)
Q Consensus       113 --------------------~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~-~L~ls  171 (495)
                                          ..++|+.|+|++|+++...+..|.++.+|+.|+|.+| ++..-+.+|.++.+|+ .|++.
T Consensus       204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~  282 (329)
T 3sb4_A          204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP  282 (329)
T ss_dssp             CSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEEC
T ss_pred             cceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEc
Confidence                                0368999999999999666678999999999999998 8767778899999999 99999


Q ss_pred             CCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEE
Q 040888          172 KNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELN  215 (495)
Q Consensus       172 ~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~  215 (495)
                      + +++..-+..|.+|++|+.+++++|+++... ..+...+ |+.++
T Consensus       283 ~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          283 A-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             T-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             c-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            9 787677789999999999999999998766 5666664 77665

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.00  E-value=1.7e-10  Score=113.29  Aligned_cols=88  Identities=23%  Similarity=0.465  Sum_probs=70.5

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCE----EEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKV----LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~----vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      ++|...+.||+|+||.||+|... +++.    ||+|.+..... ....+.+.+|+.++.+++|||||+++++|. ++..+
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~   90 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSG-RQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQ   90 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTS-CSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEE
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEecccccc-HHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccE
Confidence            35777899999999999999974 4443    78888754322 122356788999999999999999999986 45688


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +|+||+++|+|.+++
T Consensus        91 ~v~e~~~~~~L~~~l  105 (325)
T 3kex_A           91 LVTQYLPLGSLLDHV  105 (325)
T ss_dssp             EEEECCTTCBSHHHH
T ss_pred             EEEEeCCCCCHHHHH
Confidence            999999999998876

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=98.99  E-value=4.5e-10  Score=113.62  Aligned_cols=83  Identities=14%  Similarity=0.235  Sum_probs=68.1

Q ss_pred             cCCccc-ceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHh-cCCCCCcceEEEEEEe----CCE
Q 040888          405 ANFATG-RLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNIS-RIRHTNIAELVGFCSE----QGH  477 (495)
Q Consensus       405 ~~f~~~-~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~-~l~H~niv~l~g~~~~----~~~  477 (495)
                      ++|... +.||+|+||+||+|... +++.||||++..       ...+.+|++++. ..+|||||++++++..    .+.
T Consensus        61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-------~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~  133 (400)
T 1nxk_A           61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKC  133 (400)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred             ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc-------chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcE
Confidence            455544 68999999999999974 689999999853       235678888874 4589999999999876    456


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++|||||++|+|.+++
T Consensus       134 ~~lv~E~~~gg~L~~~l  150 (400)
T 1nxk_A          134 LLIVMECLDGGELFSRI  150 (400)
T ss_dssp             EEEEEECCCSEEHHHHH
T ss_pred             EEEEEEeCCCCcHHHHH
Confidence            88999999999999886

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=98.99  E-value=2.1e-10  Score=112.25  Aligned_cols=92  Identities=21%  Similarity=0.412  Sum_probs=72.2

Q ss_pred             HhccCCcccceeccCCceEEEEEEc--CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC---CCCCcceEEEEEE---
Q 040888          402 TATANFATGRLLGEGTIGRVYRAKY--PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI---RHTNIAELVGFCS---  473 (495)
Q Consensus       402 ~~t~~f~~~~~iG~G~~g~Vy~~~~--~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l---~H~niv~l~g~~~---  473 (495)
                      .+.++|...+.||+|+||.||+|..  .+|+.||||++............+.+|++++..+   +||||++++++|.   
T Consensus         8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~   87 (326)
T 1blx_A            8 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR   87 (326)
T ss_dssp             CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred             CchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc
Confidence            3456788899999999999999997  4688999999875433222234566777777665   8999999999997   


Q ss_pred             --eCCEEEEEEEecCCCCHhhhh
Q 040888          474 --EQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       474 --~~~~~~lv~ey~~~GsL~~~L  494 (495)
                        .....++||||++ |+|.+++
T Consensus        88 ~~~~~~~~lv~e~~~-~~L~~~l  109 (326)
T 1blx_A           88 TDRETKLTLVFEHVD-QDLTTYL  109 (326)
T ss_dssp             CSSEEEEEEEEECCS-CBHHHHH
T ss_pred             cCCCceEEEEEecCC-CCHHHHH
Confidence              4456789999998 6998875

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=98.98  E-value=3.9e-10  Score=112.83  Aligned_cols=90  Identities=16%  Similarity=0.290  Sum_probs=74.9

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEE----
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHN----  478 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~----  478 (495)
                      .++|...+.||+|+||.||+|.. .+|+.||||++..........+.+.+|++++.+++||||+++++++...+..    
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  120 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  120 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence            35678889999999999999987 4689999999976543333357789999999999999999999999876654    


Q ss_pred             --EEEEEecCCCCHhhhh
Q 040888          479 --ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 --~lv~ey~~~GsL~~~L  494 (495)
                        ++||||++ |+|.+++
T Consensus       121 ~~~lv~e~~~-~~l~~~~  137 (371)
T 4exu_A          121 DFYLVMPFMQ-TDLQKIM  137 (371)
T ss_dssp             CCEEEEECCC-EEHHHHT
T ss_pred             eEEEEEcccc-ccHHHHh
Confidence              99999997 6887654

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=98.98  E-value=4.3e-10  Score=121.34  Aligned_cols=92  Identities=16%  Similarity=0.238  Sum_probs=78.1

Q ss_pred             hccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccc-ccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEE
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHF-QRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~  479 (495)
                      ..++|...+.||+|+||.||+|+.. +++.||||++..... .....+.+..|.+++..+ +||+|+++++++...+..+
T Consensus       339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~  418 (674)
T 3pfq_A          339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY  418 (674)
T ss_dssp             -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred             cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence            3567889999999999999999985 588999999975422 122356788999999987 7999999999999999999


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +||||+++|+|.+++
T Consensus       419 lV~E~~~gg~L~~~l  433 (674)
T 3pfq_A          419 FVMEYVNGGDLMYHI  433 (674)
T ss_dssp             EEEECCCSCBHHHHH
T ss_pred             EEEeCcCCCcHHHHH
Confidence            999999999999876

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=98.98  E-value=1e-09  Score=106.58  Aligned_cols=90  Identities=22%  Similarity=0.397  Sum_probs=70.5

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccc---ccccHHHHHHHHHHHhcCC---CCCcceEEEEEEeCC
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHF---QRANSESFSEIVQNISRIR---HTNIAELVGFCSEQG  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~f~~e~~~l~~l~---H~niv~l~g~~~~~~  476 (495)
                      .++|...+.||+|+||.||+|.. .+++.||||++.....   .......+.+|++++.+++   ||||++++++|....
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~   87 (308)
T 3g33_A            8 TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSR   87 (308)
T ss_dssp             --CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccC
Confidence            56788899999999999999997 5689999999864321   1112356777887777664   999999999998765


Q ss_pred             -----EEEEEEEecCCCCHhhhh
Q 040888          477 -----HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 -----~~~lv~ey~~~GsL~~~L  494 (495)
                           ..++||||++ |+|.+++
T Consensus        88 ~~~~~~~~lv~e~~~-~~L~~~~  109 (308)
T 3g33_A           88 TDREIKVTLVFEHVD-QDLRTYL  109 (308)
T ss_dssp             SSSEEEEEEEEECCC-CBHHHHH
T ss_pred             CCCceeEEEEehhhh-cCHHHHH
Confidence                 4789999997 6998875

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=98.97  E-value=8.6e-10  Score=106.75  Aligned_cols=83  Identities=14%  Similarity=0.246  Sum_probs=69.4

Q ss_pred             cCCccc-ceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHH-hcCCCCCcceEEEEEEe----CCE
Q 040888          405 ANFATG-RLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNI-SRIRHTNIAELVGFCSE----QGH  477 (495)
Q Consensus       405 ~~f~~~-~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l-~~l~H~niv~l~g~~~~----~~~  477 (495)
                      ++|... +.||+|+||.||+|.. .+++.||+|++..       ...+.+|++++ ...+||||+++++++..    ...
T Consensus        17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-------~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~   89 (299)
T 3m2w_A           17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKC   89 (299)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred             cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-------cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCce
Confidence            345554 7899999999999997 5689999999853       24567888887 56699999999999987    567


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++||||+++|+|.+++
T Consensus        90 ~~lv~e~~~~~~L~~~l  106 (299)
T 3m2w_A           90 LLIVMECLDGGELFSRI  106 (299)
T ss_dssp             EEEEECCCCSCBHHHHH
T ss_pred             EEEEEeecCCCcHHHHH
Confidence            89999999999999876

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=98.97  E-value=4.2e-10  Score=111.73  Aligned_cols=89  Identities=16%  Similarity=0.293  Sum_probs=73.8

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCE------
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGH------  477 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~------  477 (495)
                      ++|...+.||+|+||.||+|.. .+|+.||||++..........+.+.+|+.++.+++||||+++++++...+.      
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  103 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD  103 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred             ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccccee
Confidence            5677789999999999999997 468999999997643333335678999999999999999999999987653      


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++||||++ |+|.+++
T Consensus       104 ~~lv~e~~~-~~l~~~~  119 (353)
T 3coi_A          104 FYLVMPFMQ-TDLQKIM  119 (353)
T ss_dssp             CEEEEECCS-EEGGGTT
T ss_pred             EEEEecccc-CCHHHHh
Confidence            489999997 6887764

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=98.96  E-value=4.9e-10  Score=110.38  Aligned_cols=90  Identities=16%  Similarity=0.202  Sum_probs=71.2

Q ss_pred             ccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCccc------ccccHHHHHHHHHHHhcCC---------CCCcceE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHF------QRANSESFSEIVQNISRIR---------HTNIAEL  468 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~------~~~~~~~f~~e~~~l~~l~---------H~niv~l  468 (495)
                      .++|...+.||+|+||.||+|+. +|+.||||++.....      .....+.+.+|++++++++         |||||++
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l   97 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL   97 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred             cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence            34577789999999999999998 789999999975432      1122478899999998886         8888888


Q ss_pred             EEEEE------------------------------eCCEEEEEEEecCCCCHhhhh
Q 040888          469 VGFCS------------------------------EQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       469 ~g~~~------------------------------~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      .+.+.                              ..+..++||||+++|++.+.+
T Consensus        98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~  153 (336)
T 2vuw_A           98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQM  153 (336)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGG
T ss_pred             cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHH
Confidence            88754                              157889999999999765543

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=98.96  E-value=4.6e-10  Score=120.73  Aligned_cols=91  Identities=23%  Similarity=0.409  Sum_probs=75.1

Q ss_pred             HhccCCcccceeccCCceEEEEEEcCC----CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCE
Q 040888          402 TATANFATGRLLGEGTIGRVYRAKYPD----GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGH  477 (495)
Q Consensus       402 ~~t~~f~~~~~iG~G~~g~Vy~~~~~~----g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  477 (495)
                      ...++|...+.||+|+||.||+|.+..    +..||||++..... ....+.|.+|+.++++++|||||++++++. ++.
T Consensus       387 i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~  464 (656)
T 2j0j_A          387 IQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTS-DSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENP  464 (656)
T ss_dssp             CCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSS
T ss_pred             cccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCC-HHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCc
Confidence            334668888999999999999998742    45799999875432 223567999999999999999999999985 456


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++||||+++|+|.+++
T Consensus       465 ~~lv~E~~~~g~L~~~l  481 (656)
T 2j0j_A          465 VWIIMELCTLGELRSFL  481 (656)
T ss_dssp             CEEEEECCTTCBHHHHH
T ss_pred             eEEEEEcCCCCcHHHHH
Confidence            89999999999999876

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=98.96  E-value=6.7e-10  Score=109.11  Aligned_cols=88  Identities=19%  Similarity=0.440  Sum_probs=72.4

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCC----EEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGK----VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~----~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      ++|...+.||+|+||.||+|... +++    .||+|.+..... ....+.+.+|++++.+++||||++++++|.... .+
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~   92 (327)
T 3lzb_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS-PKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ   92 (327)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSS-CCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EE
T ss_pred             hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccC-HHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ce
Confidence            46778899999999999999973 444    357887764332 234678999999999999999999999998765 78


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +|+||+++|+|.+++
T Consensus        93 ~v~~~~~~g~L~~~l  107 (327)
T 3lzb_A           93 LITQLMPFGCLLDYV  107 (327)
T ss_dssp             EEECCCSSCBHHHHH
T ss_pred             EEEEecCCCcHHHHH
Confidence            999999999999876

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=98.96  E-value=1.2e-09  Score=107.20  Aligned_cols=88  Identities=17%  Similarity=0.267  Sum_probs=70.4

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHH-HHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQ-NISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~-~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|... +|+.||||++...... ...+++..|+. +++.++||||+++++++...+..++||
T Consensus        22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~  100 (327)
T 3aln_A           22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDE-KEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM  100 (327)
T ss_dssp             CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCH-HHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCc-hHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence            56777899999999999999984 6899999999764321 22345666665 778889999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++ +|.+++
T Consensus       101 e~~~~-~l~~~~  111 (327)
T 3aln_A          101 ELMST-SFDKFY  111 (327)
T ss_dssp             CCCSE-EHHHHH
T ss_pred             eecCC-ChHHHH
Confidence            99985 776553

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=98.96  E-value=1.6e-10  Score=115.99  Aligned_cols=90  Identities=14%  Similarity=0.201  Sum_probs=71.0

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccc-cccHHHHHHHH---HHHhcCCCCCcceEE-------EE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQ-RANSESFSEIV---QNISRIRHTNIAELV-------GF  471 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~f~~e~---~~l~~l~H~niv~l~-------g~  471 (495)
                      .++|...+.||+|+||.||+|.. .+|+.||||++...... ....+.|.+|+   +.+++++|||||+++       ++
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            45677789999999999999997 56999999999754221 22357799999   566677899999998       66


Q ss_pred             EEeCC-----------------EEEEEEEecCCCCHhhhh
Q 040888          472 CSEQG-----------------HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       472 ~~~~~-----------------~~~lv~ey~~~GsL~~~L  494 (495)
                      +...+                 ..++||||+ +|+|.+++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l  190 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFG  190 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHH
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHH
Confidence            66543                 278999999 68999876

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=98.96  E-value=3.3e-10  Score=113.23  Aligned_cols=90  Identities=17%  Similarity=0.259  Sum_probs=68.5

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC------C
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ------G  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~------~  476 (495)
                      .++|...+.||+|+||.||+|.. .+|+.||||++..........+.+.+|++++++++||||+++++++...      .
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~  107 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN  107 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence            35788889999999999999986 5689999999975433223356788999999999999999999999754      4


Q ss_pred             EEEEEEEecCCCCHhhhh
Q 040888          477 HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L  494 (495)
                      ..++|+||+ +++|.+++
T Consensus       108 ~~~lv~e~~-~~~L~~~~  124 (367)
T 2fst_X          108 DVYLVTHLM-GADLNNIV  124 (367)
T ss_dssp             CCEEEEECC-CEECC---
T ss_pred             eEEEEeccc-CCCHHHHH
Confidence            578999999 67887765

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=98.95  E-value=7.4e-10  Score=109.72  Aligned_cols=89  Identities=22%  Similarity=0.363  Sum_probs=74.0

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC-----CE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ-----GH  477 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~-----~~  477 (495)
                      .++|...+.||+|+||.||+|... +|+.||||++..... ......+.+|++++.+++||||+++++++...     ..
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   88 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDK-PLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNE   88 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSS-HHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCC
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeeccccc-chHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccce
Confidence            457888899999999999999984 689999999965322 22346788999999999999999999998764     57


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++|+||++ |+|.+++
T Consensus        89 ~~lv~e~~~-~~L~~~~  104 (353)
T 2b9h_A           89 VYIIQELMQ-TDLHRVI  104 (353)
T ss_dssp             EEEEECCCS-EEHHHHH
T ss_pred             EEEEEeccC-ccHHHHH
Confidence            899999997 6888764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.94  E-value=2.3e-10  Score=121.65  Aligned_cols=102  Identities=15%  Similarity=0.186  Sum_probs=68.3

Q ss_pred             CEeEEEcCCCC-Ccc-ccccccCCCCCCcEEECcCCCCCCCCCCCC------CCCCcEEECcCCcCC----CCcchhccC
Q 040888           70 SVTEIKLSGLG-LNG-QLGYQLTNLKSVSYLDVSNNNLKDSIPYQL------PPNLKHLDLSENQFS----GTVPYSISQ  137 (495)
Q Consensus        70 ~v~~l~L~~n~-l~g-~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~------~~~L~~L~Ls~N~l~----g~~p~~~~~  137 (495)
                      +++.|+|+++. ++. .++....++++|++|+|++|.+++.-+..+      .++|++|+|++|.++    +.++..+.+
T Consensus       139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~  218 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN  218 (592)
T ss_dssp             GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred             cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence            38888888776 221 123334467888888888887765422111      168888888888887    334555667


Q ss_pred             CCCCcEEEcccCcCCCccchhhhCCCCCcEEEccC
Q 040888          138 MSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSK  172 (495)
Q Consensus       138 l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~  172 (495)
                      +++|+.|+|++|.+.+ +|..+..+++|+.|+++.
T Consensus       219 ~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          219 CRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             CTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECB
T ss_pred             CCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccc
Confidence            7888888888888775 566677777777777764

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=98.94  E-value=6.1e-10  Score=107.07  Aligned_cols=89  Identities=24%  Similarity=0.361  Sum_probs=65.7

Q ss_pred             cCCcccceeccCCceEEEEEEcC--CCC--EEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP--DGK--VLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~--~g~--~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      ++|...+.||+|+||.||+|++.  +++  .||||++...... ....+.|.+|++++.+++||||+++++++...+ .+
T Consensus        18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~   96 (291)
T 1u46_A           18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MK   96 (291)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CE
T ss_pred             hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ce
Confidence            45777899999999999999863  333  6899998754322 123568999999999999999999999998765 78


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +|+||+++|+|.+++
T Consensus        97 ~v~e~~~~~~L~~~l  111 (291)
T 1u46_A           97 MVTELAPLGSLLDRL  111 (291)
T ss_dssp             EEEECCTTCBHHHHH
T ss_pred             eeEecccCCCHHHHH
Confidence            999999999998875

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=98.94  E-value=1.1e-09  Score=105.74  Aligned_cols=85  Identities=22%  Similarity=0.378  Sum_probs=74.2

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|.. .+++.||||++.....    .+.+.+|++.+.++ +|+|++++++++......++||
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~   85 (298)
T 1csn_A           10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD----APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVI   85 (298)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT----SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEE
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCc----cHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEE
Confidence            4577889999999999999996 5789999999865322    34578899999999 8999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+ +|+|.+++
T Consensus        86 e~~-~~~L~~~l   96 (298)
T 1csn_A           86 DLL-GPSLEDLL   96 (298)
T ss_dssp             ECC-CCBHHHHH
T ss_pred             Eec-CCCHHHHH
Confidence            999 99999876

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=98.92  E-value=1.5e-09  Score=109.92  Aligned_cols=80  Identities=29%  Similarity=0.456  Sum_probs=62.4

Q ss_pred             cceeccCCceEEEEEEcC---CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe--CCEEEEEEEe
Q 040888          410 GRLLGEGTIGRVYRAKYP---DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE--QGHNILIYDY  484 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~--~~~~~lv~ey  484 (495)
                      .++||+|+||.||+|...   +++.||||++.....    .+.+.+|++++.+++|||||++++++..  ....++||||
T Consensus        26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~----~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~  101 (405)
T 3rgf_A           26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI----SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDY  101 (405)
T ss_dssp             SCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC----CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEEC
T ss_pred             CcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC----CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeC
Confidence            568999999999999974   578999999975432    3578899999999999999999999965  6688999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      ++ |+|.+++
T Consensus       102 ~~-~~l~~~~  110 (405)
T 3rgf_A          102 AE-HDLWHII  110 (405)
T ss_dssp             CS-EEHHHHH
T ss_pred             CC-CCHHHHH
Confidence            97 4776654

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=98.92  E-value=3.9e-10  Score=109.79  Aligned_cols=92  Identities=21%  Similarity=0.361  Sum_probs=68.5

Q ss_pred             hccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc----ccHHHHHHHHHHHhcC----CCCCcceEEEEEE
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR----ANSESFSEIVQNISRI----RHTNIAELVGFCS  473 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~----~~~~~f~~e~~~l~~l----~H~niv~l~g~~~  473 (495)
                      ..++|...+.||+|+||.||+|.. .+++.||||++.......    .....+.+|++++.++    +||||+++++++.
T Consensus        29 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~  108 (312)
T 2iwi_A           29 FEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFE  108 (312)
T ss_dssp             ----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-
T ss_pred             hhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEe
Confidence            356788999999999999999987 468899999997543211    1123466788888888    8999999999999


Q ss_pred             eCCEEEEEEEe-cCCCCHhhhh
Q 040888          474 EQGHNILIYDY-YRNGSLHEFL  494 (495)
Q Consensus       474 ~~~~~~lv~ey-~~~GsL~~~L  494 (495)
                      ..+..++|+|| +++|+|.+++
T Consensus       109 ~~~~~~~v~e~~~~~~~L~~~l  130 (312)
T 2iwi_A          109 TQEGFMLVLERPLPAQDLFDYI  130 (312)
T ss_dssp             ----CEEEEECCSSEEEHHHHH
T ss_pred             cCCeEEEEEEecCCCCCHHHHH
Confidence            98889999999 8899998876

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=98.91  E-value=2.7e-09  Score=104.90  Aligned_cols=85  Identities=28%  Similarity=0.473  Sum_probs=66.9

Q ss_pred             ccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHH--HhcCCCCCcceEEEEEEe-----CC
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQN--ISRIRHTNIAELVGFCSE-----QG  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~--l~~l~H~niv~l~g~~~~-----~~  476 (495)
                      .++|...+.||+|+||.||+|+. +++.||||++....     .+.+..|.++  +..++||||+++++++..     ..
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~-----~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~   85 (336)
T 3g2f_A           12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN-----RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRM   85 (336)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG-----HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCE
T ss_pred             hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc-----hhhHHHHHHHHHHHhccCcchhhheecccccccCCCc
Confidence            35677889999999999999987 68899999986432     3345555544  455899999999987653     22


Q ss_pred             EEEEEEEecCCCCHhhhh
Q 040888          477 HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L  494 (495)
                      ..++||||+++|+|.+++
T Consensus        86 ~~~lv~e~~~~g~L~~~l  103 (336)
T 3g2f_A           86 EYLLVMEYYPNGSLXKYL  103 (336)
T ss_dssp             EEEEEECCCTTCBHHHHH
T ss_pred             eEEEEEecCCCCcHHHHH
Confidence            568999999999999876

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=98.90  E-value=1.4e-09  Score=108.48  Aligned_cols=89  Identities=20%  Similarity=0.275  Sum_probs=73.5

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC-----CE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ-----GH  477 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~-----~~  477 (495)
                      .+.|...+.||+|+||.||+|... +++.||||++..... ....+.+.+|++++.+++||||+++++++...     ..
T Consensus        26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  104 (364)
T 3qyz_A           26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEH-QTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKD  104 (364)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTC-HHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCC
T ss_pred             cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccC-cHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccce
Confidence            346888899999999999999874 688999999975332 22346789999999999999999999999764     36


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++|+||++ |+|.+++
T Consensus       105 ~~iv~e~~~-~~L~~~l  120 (364)
T 3qyz_A          105 VYIVQDLME-TDLYKLL  120 (364)
T ss_dssp             EEEEEECCS-EEHHHHH
T ss_pred             EEEEEcccC-cCHHHHH
Confidence            899999997 5888765

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=98.90  E-value=1.8e-09  Score=110.47  Aligned_cols=81  Identities=15%  Similarity=0.199  Sum_probs=69.1

Q ss_pred             cccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEEEEecC
Q 040888          408 ATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILIYDYYR  486 (495)
Q Consensus       408 ~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv~ey~~  486 (495)
                      ...+.||+|+||+||.+...+|+.||||++....     .+.+.+|++++.++ +|||||++++++..++..++||||++
T Consensus        18 ~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~-----~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~   92 (434)
T 2rio_A           18 VSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF-----CDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN   92 (434)
T ss_dssp             EEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGG-----HHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS
T ss_pred             eccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHH-----HHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC
Confidence            3468899999999987666689999999986432     35678999999886 89999999999999999999999995


Q ss_pred             CCCHhhhh
Q 040888          487 NGSLHEFL  494 (495)
Q Consensus       487 ~GsL~~~L  494 (495)
                       |+|.+++
T Consensus        93 -gsL~~~l   99 (434)
T 2rio_A           93 -LNLQDLV   99 (434)
T ss_dssp             -EEHHHHH
T ss_pred             -CCHHHHH
Confidence             6998876

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=98.90  E-value=1.2e-09  Score=107.18  Aligned_cols=87  Identities=26%  Similarity=0.403  Sum_probs=71.4

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-CCCcceEEEEEEe--------
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-HTNIAELVGFCSE--------  474 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~--------  474 (495)
                      .+|...+.||+|+||.||+|.. .+++.||||++.....  ...+.+.+|+.++.+++ ||||+++++++..        
T Consensus        28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~  105 (337)
T 3ll6_A           28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEE--EKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTG  105 (337)
T ss_dssp             EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSH--HHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTS
T ss_pred             ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCch--HHHHHHHHHHHHHHHhccCCChhhccccccccccccccC
Confidence            4677889999999999999997 4689999999854322  23567899999999996 9999999999953        


Q ss_pred             CCEEEEEEEecCCCCHhhhh
Q 040888          475 QGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       475 ~~~~~lv~ey~~~GsL~~~L  494 (495)
                      ....++|+||++ |+|.+++
T Consensus       106 ~~~~~lv~e~~~-g~L~~~l  124 (337)
T 3ll6_A          106 QAEFLLLTELCK-GQLVEFL  124 (337)
T ss_dssp             SEEEEEEEECCS-EEHHHHH
T ss_pred             CceEEEEEEecC-CCHHHHH
Confidence            334789999996 7888765

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=98.89  E-value=9.1e-10  Score=108.95  Aligned_cols=89  Identities=13%  Similarity=0.138  Sum_probs=67.2

Q ss_pred             cCCcccceeccCCceEEEEEEcC----CCCEEEEEEecCcccc---------cccHHHHHHHHHHHhcCCCCCcceEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP----DGKVLAVKKIDSSHFQ---------RANSESFSEIVQNISRIRHTNIAELVGF  471 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~---------~~~~~~f~~e~~~l~~l~H~niv~l~g~  471 (495)
                      ++|...+.||+|+||.||+|...    .+..+|||+.......         ....+.+.+|+..+..++||||++++++
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~  116 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS  116 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence            45778899999999999999985    5778999998754211         0112457788999999999999999999


Q ss_pred             EEe----CCEEEEEEEecCCCCHhhhh
Q 040888          472 CSE----QGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       472 ~~~----~~~~~lv~ey~~~GsL~~~L  494 (495)
                      +..    ....++||||+ +|+|.+++
T Consensus       117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l  142 (345)
T 2v62_A          117 GLTEFKGRSYRFMVMERL-GIDLQKIS  142 (345)
T ss_dssp             EEEESSSCEEEEEEEECE-EEEHHHHC
T ss_pred             cccccCCCcEEEEEEecc-CCCHHHHH
Confidence            988    67889999999 99999876

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=98.88  E-value=2.7e-10  Score=121.36  Aligned_cols=89  Identities=21%  Similarity=0.344  Sum_probs=73.9

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe------CCE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE------QGH  477 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~------~~~  477 (495)
                      ++|...+.||+|+||.||+|.. .+|+.||||++..... ....+.|.+|++++.+++|||||++++++..      .+.
T Consensus        14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~-~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~   92 (676)
T 3qa8_A           14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELS-PKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL   92 (676)
T ss_dssp             ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCC-HHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred             CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCC-HHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence            5688899999999999999998 4689999999875422 2335679999999999999999999999765      566


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++||||+++|+|.+++
T Consensus        93 ~~LVmEy~~ggsL~~~L  109 (676)
T 3qa8_A           93 PLLAMEYCEGGDLRKYL  109 (676)
T ss_dssp             CCCEEECCSSCBHHHHH
T ss_pred             EEEEEEeCCCCCHHHHH
Confidence            78999999999999876

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=98.88  E-value=1.8e-09  Score=107.16  Aligned_cols=88  Identities=23%  Similarity=0.339  Sum_probs=62.2

Q ss_pred             HHHHHhccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC
Q 040888          398 ADLLTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG  476 (495)
Q Consensus       398 ~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~  476 (495)
                      .......++|...+.||+|+||.||+|... +|+.||||++.....   ..+.+.+|++.+..++|||||+++++|...+
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~   92 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR---FRNRELQIMQDLAVLHHPNIVQLQSYFYTLG   92 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTT---CCCHHHHHHHHHHHHCCTTBCCEEEEEEEEC
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc---ccHHHHHHHHHHHhcCCCCcccHHHhhhccc
Confidence            455667789999999999999999999984 689999999865432   2345678888899999999999999997643


Q ss_pred             E-------EEEEEEecCCC
Q 040888          477 H-------NILIYDYYRNG  488 (495)
Q Consensus       477 ~-------~~lv~ey~~~G  488 (495)
                      .       .++||||++++
T Consensus        93 ~~~~~~~~~~lv~e~~~~~  111 (360)
T 3e3p_A           93 ERDRRDIYLNVVMEYVPDT  111 (360)
T ss_dssp             SSCTTCEEEEEEEECCSCB
T ss_pred             cccccceeEEEEeeccccc
Confidence            3       78999999864

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=98.88  E-value=2.4e-09  Score=104.21  Aligned_cols=87  Identities=16%  Similarity=0.272  Sum_probs=63.1

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .++|...+.||+|+||.||+|... +|+.||||++..........+.+.++..++..++||||+++++++...+..++||
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~  103 (318)
T 2dyl_A           24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM  103 (318)
T ss_dssp             GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence            356777899999999999999985 6899999999765332222334555556788899999999999999999999999


Q ss_pred             EecCCCCHh
Q 040888          483 DYYRNGSLH  491 (495)
Q Consensus       483 ey~~~GsL~  491 (495)
                      ||+ ++.+.
T Consensus       104 e~~-~~~~~  111 (318)
T 2dyl_A          104 ELM-GTCAE  111 (318)
T ss_dssp             CCC-SEEHH
T ss_pred             ecc-CCcHH
Confidence            999 34443

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=98.87  E-value=7.3e-10  Score=109.93  Aligned_cols=82  Identities=13%  Similarity=0.130  Sum_probs=69.0

Q ss_pred             cCCcccceeccCCceEEEEEEcC---------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcce--------
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP---------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE--------  467 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~---------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~--------  467 (495)
                      ++|...+.||+|+||.||+|+..         +++.||||.+...       +.+.+|++++.+++|||||+        
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-------~~~~~E~~~l~~l~h~niv~~~~~~~~~  114 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-------GRLFNEQNFFQRAAKPLQVNKWKKLYST  114 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-------STHHHHHHHHHHHCCHHHHHHHHHHTTC
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-------chHHHHHHHHHHhcccchhhhhhhhccC
Confidence            46778899999999999999985         3789999998643       35789999999999999998        


Q ss_pred             -------EEEEEEe-CCEEEEEEEecCCCCHhhhh
Q 040888          468 -------LVGFCSE-QGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       468 -------l~g~~~~-~~~~~lv~ey~~~GsL~~~L  494 (495)
                             +++++.. ++..++||||+ +|+|.+++
T Consensus       115 ~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l  148 (352)
T 2jii_A          115 PLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSAL  148 (352)
T ss_dssp             TTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHH
T ss_pred             CccCccchhhccccCCcEEEEEecCC-CcCHHHHH
Confidence                   6788877 67889999999 99999886

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=98.87  E-value=3.5e-09  Score=104.38  Aligned_cols=85  Identities=18%  Similarity=0.263  Sum_probs=66.1

Q ss_pred             ccCCcc-cceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe----CCE
Q 040888          404 TANFAT-GRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE----QGH  477 (495)
Q Consensus       404 t~~f~~-~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~----~~~  477 (495)
                      .++|.. .++||+|+||.||+|... +|+.||||++....      +...+....+..++||||+++++++..    ...
T Consensus        27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~  100 (336)
T 3fhr_A           27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP------KARQEVDHHWQASGGPHIVCILDVYENMHHGKRC  100 (336)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH------HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred             cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH------HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCce
Confidence            456766 457999999999999985 69999999986431      122222334667799999999999976    445


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++||||+++|+|.+++
T Consensus       101 ~~lv~e~~~gg~L~~~l  117 (336)
T 3fhr_A          101 LLIIMECMEGGELFSRI  117 (336)
T ss_dssp             EEEEEECCTTEEHHHHH
T ss_pred             EEEEEeccCCCCHHHHH
Confidence            78999999999999876

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=98.86  E-value=1.7e-09  Score=107.88  Aligned_cols=90  Identities=17%  Similarity=0.218  Sum_probs=68.9

Q ss_pred             ccCCcccceeccCCceEEEEEEcCC------CCEEEEEEecCccccc---------ccHHHHHHHHHHHhcCCCCCcceE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPD------GKVLAVKKIDSSHFQR---------ANSESFSEIVQNISRIRHTNIAEL  468 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~------g~~vavK~l~~~~~~~---------~~~~~f~~e~~~l~~l~H~niv~l  468 (495)
                      .++|...+.||+|+||.||+|.+..      ++.||||++.......         .....+..|+..+..++||||+++
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~  113 (364)
T 3op5_A           34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY  113 (364)
T ss_dssp             CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred             CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence            4578888999999999999998854      4789999986543110         011234556677888999999999


Q ss_pred             EEEEEeC----CEEEEEEEecCCCCHhhhh
Q 040888          469 VGFCSEQ----GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       469 ~g~~~~~----~~~~lv~ey~~~GsL~~~L  494 (495)
                      ++++...    ...++||||+ +|+|.+++
T Consensus       114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~  142 (364)
T 3op5_A          114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIY  142 (364)
T ss_dssp             EEEEEEEETTEEEEEEEEECE-EEEHHHHH
T ss_pred             EeeeeeccCCcceEEEEEeCC-CCCHHHHH
Confidence            9999774    4578999999 99999876

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=98.84  E-value=3.1e-09  Score=108.51  Aligned_cols=84  Identities=20%  Similarity=0.305  Sum_probs=70.0

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      .+|...+.||+|+||+||.....+++.||||++.....     +.+.+|++++.++ +|||||++++++...+..++|||
T Consensus        24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~-----~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E   98 (432)
T 3p23_A           24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF-----SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIE   98 (432)
T ss_dssp             EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE-----EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH-----HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEE
Confidence            35777899999999996655555789999999975432     2356799999999 89999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |++ |+|.+++
T Consensus        99 ~~~-g~L~~~l  108 (432)
T 3p23_A           99 LCA-ATLQEYV  108 (432)
T ss_dssp             CCS-EEHHHHH
T ss_pred             CCC-CCHHHHH
Confidence            996 6898875

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=98.82  E-value=3.5e-09  Score=111.20  Aligned_cols=87  Identities=10%  Similarity=0.186  Sum_probs=62.8

Q ss_pred             cccceeccCCceEEEEEEcCCCCEEEEEEecCccccc------ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          408 ATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQR------ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       408 ~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~------~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      ...+.||+|+||.||+|.. .+..+++|+........      ...+.|.+|++++.+++||||+++..++...+..++|
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV  417 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM  417 (540)
T ss_dssp             ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred             CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence            3467899999999999955 56788999865432211      1134589999999999999999777777788888999


Q ss_pred             EEecCCCCHhhhhC
Q 040888          482 YDYYRNGSLHEFLH  495 (495)
Q Consensus       482 ~ey~~~GsL~~~L~  495 (495)
                      |||+++|+|.++++
T Consensus       418 mE~~~ggsL~~~l~  431 (540)
T 3en9_A          418 MSYINGKLAKDVIE  431 (540)
T ss_dssp             EECCCSEEHHHHST
T ss_pred             EECCCCCCHHHHHH
Confidence            99999999999874

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=98.82  E-value=2.9e-09  Score=106.38  Aligned_cols=88  Identities=14%  Similarity=0.061  Sum_probs=59.1

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHH---HHHhcCCCCCcceEE-------EEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIV---QNISRIRHTNIAELV-------GFC  472 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~---~~l~~l~H~niv~l~-------g~~  472 (495)
                      .+|...+.||+|+||.||+|... +|+.||||++...... ....+.+.+|+   +.+++ +||||++++       +++
T Consensus        62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~~  140 (371)
T 3q60_A           62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDAV  140 (371)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEEE
T ss_pred             eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehhe
Confidence            34777899999999999999974 6899999999875432 22345677784   55556 799988755       455


Q ss_pred             EeC-----------------CEEEEEEEecCCCCHhhhh
Q 040888          473 SEQ-----------------GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       473 ~~~-----------------~~~~lv~ey~~~GsL~~~L  494 (495)
                      ...                 ...++|||||+ |+|.+++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l  178 (371)
T 3q60_A          141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLF  178 (371)
T ss_dssp             EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHH
T ss_pred             ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHH
Confidence            433                 23799999999 8999886

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=98.82  E-value=2e-09  Score=109.53  Aligned_cols=80  Identities=25%  Similarity=0.435  Sum_probs=64.5

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC----C--EE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ----G--HN  478 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~----~--~~  478 (495)
                      .|...+.||+|+||.||+|+.. +|+.||||++....      +.+.+|++++++++|||||+++++|...    +  ..
T Consensus        55 ~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~------~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~  128 (420)
T 1j1b_A           55 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK------RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYL  128 (420)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT------TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEE
T ss_pred             eEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc------hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeE
Confidence            5777899999999999999985 59999999986532      1234799999999999999999998652    2  35


Q ss_pred             EEEEEecCCCCHhh
Q 040888          479 ILIYDYYRNGSLHE  492 (495)
Q Consensus       479 ~lv~ey~~~GsL~~  492 (495)
                      ++||||+++ +|.+
T Consensus       129 ~lv~e~~~~-~l~~  141 (420)
T 1j1b_A          129 NLVLDYVPE-TVYR  141 (420)
T ss_dssp             EEEEECCCE-EHHH
T ss_pred             Eeehhcccc-cHHH
Confidence            689999986 5544

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=98.82  E-value=2.2e-09  Score=105.00  Aligned_cols=92  Identities=20%  Similarity=0.396  Sum_probs=75.7

Q ss_pred             hccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc----ccHHHHHHHHHHHhcCC--CCCcceEEEEEEeC
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR----ANSESFSEIVQNISRIR--HTNIAELVGFCSEQ  475 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~----~~~~~f~~e~~~l~~l~--H~niv~l~g~~~~~  475 (495)
                      ..++|...+.||+|+||.||+|.. .+++.||||.+.......    ...+.+.+|++++.+++  |+||+++++++...
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~  120 (320)
T 3a99_A           41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP  120 (320)
T ss_dssp             CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred             ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence            345688899999999999999986 568899999997653221    11245778999999996  59999999999999


Q ss_pred             CEEEEEEEecCC-CCHhhhh
Q 040888          476 GHNILIYDYYRN-GSLHEFL  494 (495)
Q Consensus       476 ~~~~lv~ey~~~-GsL~~~L  494 (495)
                      +..++|+||+.+ |+|.+++
T Consensus       121 ~~~~lv~e~~~~~~~L~~~l  140 (320)
T 3a99_A          121 DSFVLILERPEPVQDLFDFI  140 (320)
T ss_dssp             SEEEEEEECCSSEEEHHHHH
T ss_pred             CcEEEEEEcCCCCccHHHHH
Confidence            999999999986 8898875

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=98.81  E-value=7.9e-09  Score=105.43  Aligned_cols=87  Identities=14%  Similarity=0.270  Sum_probs=72.4

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcC------CCCCcceEEEEEEeCC
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI------RHTNIAELVGFCSEQG  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l------~H~niv~l~g~~~~~~  476 (495)
                      ...|...+.||+|+||.||+|... +++.||||++....   ...+.+.+|++++..+      .|+||+++++++...+
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~  172 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK---RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRN  172 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH---HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETT
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc---chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCC
Confidence            346788899999999999999874 58899999997542   2245677888888776      5779999999999999


Q ss_pred             EEEEEEEecCCCCHhhhh
Q 040888          477 HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L  494 (495)
                      ..++||||++ |+|.+++
T Consensus       173 ~~~lv~e~~~-~~L~~~l  189 (429)
T 3kvw_A          173 HICMTFELLS-MNLYELI  189 (429)
T ss_dssp             EEEEEECCCC-CBHHHHH
T ss_pred             eEEEEEeccC-CCHHHHH
Confidence            9999999996 6888765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.81  E-value=2.9e-10  Score=120.79  Aligned_cols=153  Identities=14%  Similarity=0.143  Sum_probs=77.3

Q ss_pred             CCEeEEEcCCCCCccc-cccccCCCCCCcEEECcC---------CCCCCCCCCCC---CCCCcEEECcCCcCCCCcchhc
Q 040888           69 SSVTEIKLSGLGLNGQ-LGYQLTNLKSVSYLDVSN---------NNLKDSIPYQL---PPNLKHLDLSENQFSGTVPYSI  135 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~-~~~~~~~l~~L~~L~Ls~---------N~l~g~~p~~~---~~~L~~L~Ls~N~l~g~~p~~~  135 (495)
                      .+++.|+|.+| +... ++.....+++|+.|+|+.         |.+++.....+   .++|+.|+++.|++++..+..+
T Consensus       314 ~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l  392 (594)
T 2p1m_B          314 PKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI  392 (594)
T ss_dssp             TTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH
T ss_pred             CCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH
Confidence            56777777776 3322 222233466777777632         33332111111   1566666666666665544444


Q ss_pred             c-CCCCCcEEEcc--c----CcCCC-----ccchhhhCCCCCcEEEccCCcCCCcCcccccC-CCCCCEEeccCCccccc
Q 040888          136 S-QMSELKYLNLG--S----NQLNG-----QLSDMFQKNEKLETLDLSKNQLTGELPRSFAS-LSSLKKLYLQNNQFTGS  202 (495)
Q Consensus       136 ~-~l~~L~~L~L~--~----N~l~g-----~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~-l~~L~~L~l~~N~l~g~  202 (495)
                      . .+++|+.|+|+  +    |.+++     .++..+..+++|+.|+|++ ++++..+..+.. +++|+.|+|++|.+++.
T Consensus       393 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~  471 (594)
T 2p1m_B          393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDL  471 (594)
T ss_dssp             HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHH
T ss_pred             HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHH
Confidence            3 36666666666  3    44442     1222345555666666654 454444444443 55566666666665443


Q ss_pred             c-ccc-CCcc-CcEEEeecCCCcc
Q 040888          203 I-NVL-GKLP-LDELNVENNKFSG  223 (495)
Q Consensus       203 ~-~~~-~~~~-L~~l~l~~N~l~g  223 (495)
                      . ..+ ..++ |+.|++++|.+++
T Consensus       472 ~~~~l~~~~~~L~~L~L~~n~~~~  495 (594)
T 2p1m_B          472 GMHHVLSGCDSLRKLEIRDCPFGD  495 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEESCSCCH
T ss_pred             HHHHHHhcCCCcCEEECcCCCCcH
Confidence            2 111 2233 5666666666543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.80  E-value=2.1e-11  Score=115.36  Aligned_cols=64  Identities=34%  Similarity=0.557  Sum_probs=32.7

Q ss_pred             cCCCCCcEEEcccCcCCC--ccchhhhCCCCCcEEEccCCcCCCcCcccccCCC--CCCEEeccCCcccc
Q 040888          136 SQMSELKYLNLGSNQLNG--QLSDMFQKNEKLETLDLSKNQLTGELPRSFASLS--SLKKLYLQNNQFTG  201 (495)
Q Consensus       136 ~~l~~L~~L~L~~N~l~g--~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~--~L~~L~l~~N~l~g  201 (495)
                      .++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+++
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            345566666666666655  3445555555666666666665543  1222222  44455544444443

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=98.79  E-value=4.1e-09  Score=105.94  Aligned_cols=86  Identities=16%  Similarity=0.280  Sum_probs=70.3

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCC--------CCCcceEEEEEE--
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR--------HTNIAELVGFCS--  473 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~--------H~niv~l~g~~~--  473 (495)
                      ++|...+.||+|+||.||+|.. .+++.||||++....   ...+.+.+|++++.+++        |+||+++++++.  
T Consensus        37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~  113 (397)
T 1wak_A           37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAE---HYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKIS  113 (397)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH---HHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEE
T ss_pred             CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCC---cchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeec
Confidence            5688889999999999999986 568899999997542   23567889999999986        788999999997  


Q ss_pred             --eCCEEEEEEEecCCCCHhhhh
Q 040888          474 --EQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       474 --~~~~~~lv~ey~~~GsL~~~L  494 (495)
                        .....++||||+ +|+|.+++
T Consensus       114 ~~~~~~~~lv~e~~-~~~l~~~~  135 (397)
T 1wak_A          114 GVNGTHICMVFEVL-GHHLLKWI  135 (397)
T ss_dssp             ETTEEEEEEEECCC-CCBHHHHH
T ss_pred             CCCCceEEEEEecc-CccHHHHH
Confidence              445789999999 56666543

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=98.79  E-value=5.5e-09  Score=102.43  Aligned_cols=86  Identities=21%  Similarity=0.403  Sum_probs=72.8

Q ss_pred             cCCcccceeccCCceEEEEEEc--CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCC------cceEEEEEEeCC
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY--PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN------IAELVGFCSEQG  476 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~--~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~n------iv~l~g~~~~~~  476 (495)
                      ++|...+.||+|+||.||+|..  .+++.||||++....   ...+.+.+|++++..++|++      ++++++++...+
T Consensus        14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~   90 (339)
T 1z57_A           14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD---RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHG   90 (339)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH---HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETT
T ss_pred             CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC---chhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCC
Confidence            4677889999999999999986  368899999997532   22467889999998887665      999999999999


Q ss_pred             EEEEEEEecCCCCHhhhh
Q 040888          477 HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L  494 (495)
                      ..++||||+ +|+|.+++
T Consensus        91 ~~~lv~e~~-~~~l~~~l  107 (339)
T 1z57_A           91 HICIVFELL-GLSTYDFI  107 (339)
T ss_dssp             EEEEEEECC-CCBHHHHH
T ss_pred             cEEEEEcCC-CCCHHHHH
Confidence            999999999 88998875

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=98.79  E-value=7.4e-09  Score=99.63  Aligned_cols=86  Identities=16%  Similarity=0.298  Sum_probs=71.8

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEE-EeCCEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC-SEQGHNILI  481 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~-~~~~~~~lv  481 (495)
                      .++|...+.||+|+||.||+|+. .+++.||||++.....    .+.+.+|++++.+++|++++..+.+| ...+..++|
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv   83 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK----HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMV   83 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS----CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEE
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc----hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEE
Confidence            45688889999999999999997 5789999999865432    34688999999999999887766666 556778999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+ +|+|.+++
T Consensus        84 ~e~~-~~~L~~~~   95 (296)
T 3uzp_A           84 MELL-GPSLEDLF   95 (296)
T ss_dssp             EECC-CCBHHHHH
T ss_pred             EEec-CCCHHHHH
Confidence            9999 89999876

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=98.77  E-value=4.8e-09  Score=105.81  Aligned_cols=80  Identities=21%  Similarity=0.404  Sum_probs=64.6

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC------EE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG------HN  478 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~------~~  478 (495)
                      ..|...+.||+|+||.||+|+...+..||+|++.....      ...+|+++++.++|||||+++++|...+      ..
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~------~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~  113 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR------FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFL  113 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT------SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEE
T ss_pred             ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc------hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEE
Confidence            35777899999999999999997766799998864321      1236899999999999999999997643      27


Q ss_pred             EEEEEecCCCCH
Q 040888          479 ILIYDYYRNGSL  490 (495)
Q Consensus       479 ~lv~ey~~~GsL  490 (495)
                      ++||||++++.+
T Consensus       114 ~lv~e~~~~~l~  125 (394)
T 4e7w_A          114 NLVLEYVPETVY  125 (394)
T ss_dssp             EEEEECCSEEHH
T ss_pred             EEEeeccCccHH
Confidence            899999987533

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=98.75  E-value=9.7e-09  Score=98.73  Aligned_cols=86  Identities=16%  Similarity=0.298  Sum_probs=68.8

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEE-EeCCEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC-SEQGHNILI  481 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~-~~~~~~~lv  481 (495)
                      .++|...+.||+|+||.||+|+. .+++.||||.+.....    .+.+.+|++++.+++|++++..+++| ...+..++|
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv   83 (296)
T 4hgt_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK----HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMV   83 (296)
T ss_dssp             ---CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-------CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEE
T ss_pred             CCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc----chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEE
Confidence            46788899999999999999997 5688999998755322    23578899999999998888777776 566788999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+ +|+|.+++
T Consensus        84 ~e~~-~~~L~~~~   95 (296)
T 4hgt_A           84 MELL-GPSLEDLF   95 (296)
T ss_dssp             EECC-CCBHHHHH
T ss_pred             EEcc-CCCHHHHH
Confidence            9999 99998875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.73  E-value=1.9e-09  Score=114.39  Aligned_cols=105  Identities=20%  Similarity=0.246  Sum_probs=64.3

Q ss_pred             CCEeEEEcCCCCCccccccccC-CCCCCcEEECcCC-CCCCC-CCCCC--CCCCcEEECcCCcCCCCcchhcc----CCC
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLT-NLKSVSYLDVSNN-NLKDS-IPYQL--PPNLKHLDLSENQFSGTVPYSIS----QMS  139 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~-~l~~L~~L~Ls~N-~l~g~-~p~~~--~~~L~~L~Ls~N~l~g~~p~~~~----~l~  139 (495)
                      .+++.|+|++|.+++..+..+. .+++|+.|+|++| .++.. ++...  .++|++|+|++|.+++..+..+.    .++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            5788888888888776666554 5777888888777 44321 11111  26777777777777665444333    556


Q ss_pred             CCcEEEcccCc--CCC-ccchhhhCCCCCcEEEccCC
Q 040888          140 ELKYLNLGSNQ--LNG-QLSDMFQKNEKLETLDLSKN  173 (495)
Q Consensus       140 ~L~~L~L~~N~--l~g-~~p~~~~~l~~L~~L~ls~N  173 (495)
                      +|+.|+|++|.  ++. .++..+..+++|+.|+|++|
T Consensus       185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            77777777775  221 12222344567777777766

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=98.72  E-value=1.8e-08  Score=104.15  Aligned_cols=85  Identities=21%  Similarity=0.321  Sum_probs=70.2

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCC-CCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRH-TNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H-~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|+. .+++.||||++.....    .+++.+|++++..++| ++++.+..++...+..++||
T Consensus         7 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~----~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvm   82 (483)
T 3sv0_A            7 NKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK----HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVM   82 (483)
T ss_dssp             TTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS----SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc----cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEE
Confidence            5688889999999999999997 5699999998765432    2357889999999987 55556666677788899999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+ +|+|.+++
T Consensus        83 e~~-g~sL~~ll   93 (483)
T 3sv0_A           83 DLL-GPSLEDLF   93 (483)
T ss_dssp             ECC-CCBHHHHH
T ss_pred             ECC-CCCHHHHH
Confidence            999 99999876

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=98.71  E-value=7.7e-09  Score=103.07  Aligned_cols=86  Identities=20%  Similarity=0.384  Sum_probs=72.0

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-----------CCCcceEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-----------HTNIAELVGFC  472 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-----------H~niv~l~g~~  472 (495)
                      ++|...+.||+|+||.||+|+. .+++.||||++....   ...+.+.+|++++.+++           |+||+++++++
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~   95 (373)
T 1q8y_A           19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK---VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHF   95 (373)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH---HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEE
T ss_pred             CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc---cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHh
Confidence            4677789999999999999997 568999999997542   22467889999998886           89999999999


Q ss_pred             EeCC----EEEEEEEecCCCCHhhhh
Q 040888          473 SEQG----HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       473 ~~~~----~~~lv~ey~~~GsL~~~L  494 (495)
                      ...+    ..++||||+ +|+|.+++
T Consensus        96 ~~~~~~~~~~~lv~e~~-~~~L~~~~  120 (373)
T 1q8y_A           96 NHKGPNGVHVVMVFEVL-GENLLALI  120 (373)
T ss_dssp             EEEETTEEEEEEEECCC-CEEHHHHH
T ss_pred             hccCCCCceEEEEEecC-CCCHHHHH
Confidence            8654    678999999 88998875

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=98.70  E-value=2.2e-08  Score=96.15  Aligned_cols=91  Identities=15%  Similarity=0.132  Sum_probs=67.8

Q ss_pred             HHHHHhccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCccccc----------------ccHHHHHHHHHHHhcCC
Q 040888          398 ADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQR----------------ANSESFSEIVQNISRIR  461 (495)
Q Consensus       398 ~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~----------------~~~~~f~~e~~~l~~l~  461 (495)
                      ..+......|...+.||+|+||.||+|...+|+.||||.++......                .....+.+|++++.+++
T Consensus        83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~  162 (282)
T 1zar_A           83 HRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ  162 (282)
T ss_dssp             HHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc
Confidence            33444445566779999999999999999779999999997542210                12456899999999999


Q ss_pred             CCCcceEEEEEEeCCEEEEEEEecCCCCHhh
Q 040888          462 HTNIAELVGFCSEQGHNILIYDYYRNGSLHE  492 (495)
Q Consensus       462 H~niv~l~g~~~~~~~~~lv~ey~~~GsL~~  492 (495)
                        | +++.+++.. +..++|||||++|+|.+
T Consensus       163 --~-~~v~~~~~~-~~~~lvmE~~~g~~L~~  189 (282)
T 1zar_A          163 --G-LAVPKVYAW-EGNAVLMELIDAKELYR  189 (282)
T ss_dssp             --T-SSSCCEEEE-ETTEEEEECCCCEEGGG
T ss_pred             --C-CCcCeEEec-cceEEEEEecCCCcHHH
Confidence              4 666665544 44589999999999987

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=98.68  E-value=2.4e-08  Score=100.21  Aligned_cols=88  Identities=20%  Similarity=0.284  Sum_probs=72.9

Q ss_pred             hccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-CC-----CcceEEEEEEeC
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-HT-----NIAELVGFCSEQ  475 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-H~-----niv~l~g~~~~~  475 (495)
                      ..++|...+.||+|+||.||+|... +++.||||++....   ...+++..|++++..++ |+     +++++.+++...
T Consensus        52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~  128 (382)
T 2vx3_A           52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK---AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFR  128 (382)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH---HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEET
T ss_pred             eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH---HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccC
Confidence            3567888999999999999999874 68899999997532   22456788888888875 55     499999999999


Q ss_pred             CEEEEEEEecCCCCHhhhh
Q 040888          476 GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       476 ~~~~lv~ey~~~GsL~~~L  494 (495)
                      +..++||||++ |+|.+++
T Consensus       129 ~~~~lv~e~~~-~~L~~~l  146 (382)
T 2vx3_A          129 NHLCLVFEMLS-YNLYDLL  146 (382)
T ss_dssp             TEEEEEEECCC-CBHHHHH
T ss_pred             CceEEEEecCC-CCHHHHH
Confidence            99999999996 5998875

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=98.64  E-value=2.9e-08  Score=97.95  Aligned_cols=86  Identities=21%  Similarity=0.332  Sum_probs=71.1

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CC-CEEEEEEecCcccccccHHHHHHHHHHHhcCCCCC------cceEEEEEEeCC
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DG-KVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN------IAELVGFCSEQG  476 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g-~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~n------iv~l~g~~~~~~  476 (495)
                      ++|...+.||+|+||.||+|... ++ +.||||+++...   ...+.+.+|++++.+++|++      ++.+.+++...+
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~   95 (355)
T 2eu9_A           19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG---KYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHG   95 (355)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH---HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETT
T ss_pred             ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccc---cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCC
Confidence            46788899999999999999874 34 689999997532   23467889999999998776      999999999999


Q ss_pred             EEEEEEEecCCCCHhhhh
Q 040888          477 HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L  494 (495)
                      ..++||||+ +|++.+++
T Consensus        96 ~~~lv~e~~-~~~l~~~l  112 (355)
T 2eu9_A           96 HMCIAFELL-GKNTFEFL  112 (355)
T ss_dssp             EEEEEEECC-CCBHHHHH
T ss_pred             eEEEEEecc-CCChHHHH
Confidence            999999999 56776654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.63  E-value=2.5e-09  Score=95.99  Aligned_cols=114  Identities=18%  Similarity=0.207  Sum_probs=54.7

Q ss_pred             ccccCCCCCCcEEECcCC-CCCCC----CCCCC--CCCCcEEECcCCcCCCC----cchhccCCCCCcEEEcccCcCCCc
Q 040888           86 GYQLTNLKSVSYLDVSNN-NLKDS----IPYQL--PPNLKHLDLSENQFSGT----VPYSISQMSELKYLNLGSNQLNGQ  154 (495)
Q Consensus        86 ~~~~~~l~~L~~L~Ls~N-~l~g~----~p~~~--~~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~L~~N~l~g~  154 (495)
                      ...+...+.|++|+|++| .+...    +...+  .++|++|+|++|.|...    +...+...++|++|+|++|.|+..
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            344555566666666665 55421    00001  14455555555555421    223333445556666666655532


Q ss_pred             ----cchhhhCCCCCcEEEc--cCCcCCCc----CcccccCCCCCCEEeccCCcc
Q 040888          155 ----LSDMFQKNEKLETLDL--SKNQLTGE----LPRSFASLSSLKKLYLQNNQF  199 (495)
Q Consensus       155 ----~p~~~~~l~~L~~L~l--s~N~l~g~----~p~~~~~l~~L~~L~l~~N~l  199 (495)
                          +...+...++|++|+|  ++|.++..    +...+...++|+.|+|++|.+
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence                2344444555666666  55555432    222333445555555555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.61  E-value=2e-08  Score=99.67  Aligned_cols=161  Identities=19%  Similarity=0.238  Sum_probs=103.8

Q ss_pred             CCEeEEEcCCCCC---------ccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhcc--C
Q 040888           69 SSVTEIKLSGLGL---------NGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSIS--Q  137 (495)
Q Consensus        69 ~~v~~l~L~~n~l---------~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~--~  137 (495)
                      ++++.|.+.++..         .+.++..+..+++|+.|+|++|.-. .++..-.++|+.|+|..|.++......+.  .
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~  217 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGKKPRPNLKSLEIISGGLPDSVVEDILGSD  217 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCSCBCTTCSEEEEECSBCCHHHHHHHHHSB
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eeccccCCCCcEEEEecCCCChHHHHHHHHcc
Confidence            5788888866543         1235556677889999999887311 23331237899999998887754444444  6


Q ss_pred             CCCCcEEEccc--CcCCCc-----cchhh--hCCCCCcEEEccCCcCCCcCccccc---CCCCCCEEeccCCcccccc--
Q 040888          138 MSELKYLNLGS--NQLNGQ-----LSDMF--QKNEKLETLDLSKNQLTGELPRSFA---SLSSLKKLYLQNNQFTGSI--  203 (495)
Q Consensus       138 l~~L~~L~L~~--N~l~g~-----~p~~~--~~l~~L~~L~ls~N~l~g~~p~~~~---~l~~L~~L~l~~N~l~g~~--  203 (495)
                      +++|+.|+|+.  |...|.     +...+  ..+++|++|+|++|.+++..+..+.   .+++|++|+|+.|.+++.-  
T Consensus       218 lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~  297 (362)
T 2ra8_A          218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR  297 (362)
T ss_dssp             CTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHH
T ss_pred             CCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHH
Confidence            88999998863  222221     11122  2468899999999988754443333   4778999999999887632  


Q ss_pred             ---cccCCcc-CcEEEeecCCCcccCchhhh
Q 040888          204 ---NVLGKLP-LDELNVENNKFSGWVPEELK  230 (495)
Q Consensus       204 ---~~~~~~~-L~~l~l~~N~l~g~~p~~l~  230 (495)
                         ..+..++ |+.|++++|.++...-..+.
T Consensus       298 ~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~  328 (362)
T 2ra8_A          298 LLLDHVDKIKHLKFINMKYNYLSDEMKKELQ  328 (362)
T ss_dssp             HHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred             HHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence               2222334 89999999987754333333

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.56  E-value=5.2e-08  Score=92.06  Aligned_cols=77  Identities=30%  Similarity=0.389  Sum_probs=65.2

Q ss_pred             CCCcEEECcCCcCCC--CcchhccCCCCCcEEEcccCcCCCccchhhhCCC--CCcEEEccCCcCCCcCcc-------cc
Q 040888          115 PNLKHLDLSENQFSG--TVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNE--KLETLDLSKNQLTGELPR-------SF  183 (495)
Q Consensus       115 ~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~--~L~~L~ls~N~l~g~~p~-------~~  183 (495)
                      ++|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|+.|+|++|.+++.+|.       .+
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il  247 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR  247 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence            699999999999998  5667888999999999999999976  3344444  999999999999987773       36


Q ss_pred             cCCCCCCEEe
Q 040888          184 ASLSSLKKLY  193 (495)
Q Consensus       184 ~~l~~L~~L~  193 (495)
                      ..+++|+.||
T Consensus       248 ~~~P~L~~LD  257 (267)
T 3rw6_A          248 ERFPKLLRLD  257 (267)
T ss_dssp             HHCTTCCEES
T ss_pred             HHCcccCeEC
Confidence            7889999886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.54  E-value=1.5e-08  Score=90.79  Aligned_cols=109  Identities=19%  Similarity=0.279  Sum_probs=87.6

Q ss_pred             CCCEeEEEcCCC-CCccc----cccccCCCCCCcEEECcCCCCCCCCC----CCCC--CCCcEEECcCCcCCCC----cc
Q 040888           68 GSSVTEIKLSGL-GLNGQ----LGYQLTNLKSVSYLDVSNNNLKDSIP----YQLP--PNLKHLDLSENQFSGT----VP  132 (495)
Q Consensus        68 ~~~v~~l~L~~n-~l~g~----~~~~~~~l~~L~~L~Ls~N~l~g~~p----~~~~--~~L~~L~Ls~N~l~g~----~p  132 (495)
                      ...++.|+|++| .+...    +...+...++|++|||++|.+...-.    ..+.  ++|++|+|++|.|+..    +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            368999999999 88753    55677888999999999999974211    1111  6899999999999854    45


Q ss_pred             hhccCCCCCcEEEc--ccCcCCCc----cchhhhCCCCCcEEEccCCcCC
Q 040888          133 YSISQMSELKYLNL--GSNQLNGQ----LSDMFQKNEKLETLDLSKNQLT  176 (495)
Q Consensus       133 ~~~~~l~~L~~L~L--~~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~  176 (495)
                      ..+...++|++|+|  ++|.|+..    +...+...++|+.|+|++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            66788899999999  88999854    4566777799999999999985

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.48  E-value=7.1e-07  Score=89.93  Aligned_cols=144  Identities=15%  Similarity=0.169  Sum_probs=83.8

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCC-CCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEE
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIP-YQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLN  145 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  145 (495)
                      .+++.|+|.+|+++..-...|. +++|+.++|..+ +. .|+ ..+.  ++|+.++|..| ++..-...|.+ .+|+.+.
T Consensus       180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~  254 (401)
T 4fdw_A          180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK  254 (401)
T ss_dssp             TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred             ccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence            5788888888888765555555 577888888744 44 233 2222  56777777764 44333344444 5666666


Q ss_pred             cccCcCCCccchhhhCCCCCcEEEccCCcCC-----CcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeec
Q 040888          146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLT-----GELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVEN  218 (495)
Q Consensus       146 L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~-----g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~  218 (495)
                      | .|.++..-+..|.++.+|+.+++.+|.+.     ..-+..|.+|++|+.++|.+ .++... ..+..+. |+.+++..
T Consensus       255 l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~  332 (401)
T 4fdw_A          255 L-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA  332 (401)
T ss_dssp             E-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred             e-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence            6 34455444556666667777776666554     23344566666677766663 343322 3344433 66666644


Q ss_pred             C
Q 040888          219 N  219 (495)
Q Consensus       219 N  219 (495)
                      |
T Consensus       333 ~  333 (401)
T 4fdw_A          333 N  333 (401)
T ss_dssp             T
T ss_pred             c
Confidence            3

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.42  E-value=1.5e-06  Score=87.50  Aligned_cols=124  Identities=17%  Similarity=0.226  Sum_probs=66.7

Q ss_pred             EeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCC-CCC-CCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           71 VTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPY-QLP-PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        71 v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~-~~~-~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      ++.|.|.+ .+...-+..|.+|++|+.++|+.|+++. +|. .+. .+|+.+.|..| ++..-...|.++.+|+.++|..
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~-I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK-LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE-ECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE-echhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            55555553 4444444556666666666666666552 222 222 56666666533 4434444566666666666665


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCccc
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT  200 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~  200 (495)
                      | ++..-..+|.+ .+|+.+.| .|.++..-+..|.+|++|+.+++.+|.+.
T Consensus       236 ~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~  284 (401)
T 4fdw_A          236 N-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFN  284 (401)
T ss_dssp             T-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred             C-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCcccc
Confidence            3 34333344544 55666666 34454444556666666666666666554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.38  E-value=4.4e-08  Score=97.21  Aligned_cols=149  Identities=22%  Similarity=0.311  Sum_probs=102.0

Q ss_pred             CCCEeEEEcCCCC-CccccccccCCCCCCcEEECcCCCCCCCCCCC----CCCCCcEEECcC--CcCCCC-----cchhc
Q 040888           68 GSSVTEIKLSGLG-LNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQ----LPPNLKHLDLSE--NQFSGT-----VPYSI  135 (495)
Q Consensus        68 ~~~v~~l~L~~n~-l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~----~~~~L~~L~Ls~--N~l~g~-----~p~~~  135 (495)
                      .++++.|+|.++. +  .++. +. +++|+.|+|..+.++......    -.|+|+.|+|+.  |...|.     +...+
T Consensus       171 ~P~L~~L~L~g~~~l--~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNL--SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             CTTCCEEEEECCBTC--BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             CCCCcEEEEeCCCCc--eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            3689999998873 2  2333 43 889999999998876432111    137999999863  332222     11122


Q ss_pred             --cCCCCCcEEEcccCcCCCccchhhh---CCCCCcEEEccCCcCCCc----CcccccCCCCCCEEeccCCcccccc-cc
Q 040888          136 --SQMSELKYLNLGSNQLNGQLSDMFQ---KNEKLETLDLSKNQLTGE----LPRSFASLSSLKKLYLQNNQFTGSI-NV  205 (495)
Q Consensus       136 --~~l~~L~~L~L~~N~l~g~~p~~~~---~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~g~~-~~  205 (495)
                        ..+++|++|+|++|.+++..+..+.   .+++|++|+|+.|.|++.    ++..+.++++|+.|+|++|.++... ..
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~  326 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE  326 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence              3579999999999999865544443   477899999999999874    4445567899999999999987543 22


Q ss_pred             cCCccCcEEEeecCC
Q 040888          206 LGKLPLDELNVENNK  220 (495)
Q Consensus       206 ~~~~~L~~l~l~~N~  220 (495)
                      +...-...+++++|.
T Consensus       327 l~~alg~~~~~~~~~  341 (362)
T 2ra8_A          327 LQKSLPMKIDVSDSQ  341 (362)
T ss_dssp             HHHHCCSEEECCSBC
T ss_pred             HHHHcCCEEEecCCc
Confidence            222002467888776

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.35  E-value=2.5e-07  Score=97.62  Aligned_cols=82  Identities=10%  Similarity=0.020  Sum_probs=58.9

Q ss_pred             eccCCceEEEEEEc-CCCCEEEEEEecCcccc--------cccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEEEE
Q 040888          413 LGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQ--------RANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       413 iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--------~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .+.|..|.++++.. -.|+.+|||.+......        ....++|.+|+++|+++ .|+||+++++++.+++..||||
T Consensus       242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM  321 (569)
T 4azs_A          242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM  321 (569)
T ss_dssp             -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred             cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence            44555554444332 24788999999754211        11246799999999999 7999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||++||+|.++|
T Consensus       322 Eyv~G~~L~d~i  333 (569)
T 4azs_A          322 EKLPGRLLSDML  333 (569)
T ss_dssp             ECCCSEEHHHHH
T ss_pred             ecCCCCcHHHHH
Confidence            999999999986

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=98.00  E-value=1.1e-06  Score=87.16  Aligned_cols=85  Identities=8%  Similarity=0.135  Sum_probs=56.0

Q ss_pred             CcccceeccCCceEEEEEEcCCCCEEEEEEecCcccc------------cccHHHH--------HHHHHHHhcCCCCCcc
Q 040888          407 FATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQ------------RANSESF--------SEIVQNISRIRHTNIA  466 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~------------~~~~~~f--------~~e~~~l~~l~H~niv  466 (495)
                      |.....||+|+||.||+|..++|+.||||.++.....            .......        .+|...|.++.+..+.
T Consensus        97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~  176 (397)
T 4gyi_A           97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFP  176 (397)
T ss_dssp             SEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             EEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            7788999999999999999999999999987643210            0001112        2455666666544443


Q ss_pred             eEEEEEEeCCEEEEEEEecCCCCHhhh
Q 040888          467 ELVGFCSEQGHNILIYDYYRNGSLHEF  493 (495)
Q Consensus       467 ~l~g~~~~~~~~~lv~ey~~~GsL~~~  493 (495)
                      ....+....  .++||||++++.|.++
T Consensus       177 vp~p~~~~~--~~LVME~i~G~~L~~l  201 (397)
T 4gyi_A          177 VPEPIAQSR--HTIVMSLVDALPMRQV  201 (397)
T ss_dssp             CCCEEEEET--TEEEEECCSCEEGGGC
T ss_pred             CCeeeeccC--ceEEEEecCCccHhhh
Confidence            222222222  2699999999888664

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=98.00  E-value=2.3e-06  Score=80.74  Aligned_cols=76  Identities=20%  Similarity=0.246  Sum_probs=54.5

Q ss_pred             CcccceeccCCceEEEEEEc-CCCCE--EEEEEecCccccc----------------------ccHHHHHHHHHHHhcCC
Q 040888          407 FATGRLLGEGTIGRVYRAKY-PDGKV--LAVKKIDSSHFQR----------------------ANSESFSEIVQNISRIR  461 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~-~~g~~--vavK~l~~~~~~~----------------------~~~~~f~~e~~~l~~l~  461 (495)
                      |...+.||+|+||.||+|.. .+|+.  ||||.++......                      .....+.+|++.+.+++
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            45568899999999999998 68888  9999875431110                      01136889999999998


Q ss_pred             CCCc--ceEEEEEEeCCEEEEEEEecC
Q 040888          462 HTNI--AELVGFCSEQGHNILIYDYYR  486 (495)
Q Consensus       462 H~ni--v~l~g~~~~~~~~~lv~ey~~  486 (495)
                      |+++  ..++++    +..++||||+.
T Consensus       129 ~~~i~~p~~~~~----~~~~lVmE~~g  151 (258)
T 1zth_A          129 EAGVSVPQPYTY----MKNVLLMEFIG  151 (258)
T ss_dssp             HTTCCCCCEEEE----ETTEEEEECCE
T ss_pred             hCCCCCCeEEEc----CCCEEEEEecC
Confidence            8865  333332    24589999994

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=97.90  E-value=9.1e-06  Score=82.19  Aligned_cols=60  Identities=15%  Similarity=0.134  Sum_probs=46.7

Q ss_pred             hccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccc-ccccHHHHHHHHHHHhcCCC
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHF-QRANSESFSEIVQNISRIRH  462 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~~f~~e~~~l~~l~H  462 (495)
                      .+..|...+.||+|+||.||+|.. .+|+.||||++..... .....+.|.+|+.++..++|
T Consensus        76 ~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~  137 (413)
T 3dzo_A           76 RPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRG  137 (413)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTT
T ss_pred             CceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhcc
Confidence            344567789999999999999996 5799999999874322 12235779999999999987

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.69  E-value=2.2e-05  Score=68.86  Aligned_cols=84  Identities=8%  Similarity=0.126  Sum_probs=60.4

Q ss_pred             CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCc-CCCccchhhhCC----CCCcEEEccCCc-CCCcCcccccCCCC
Q 040888          115 PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQ-LNGQLSDMFQKN----EKLETLDLSKNQ-LTGELPRSFASLSS  188 (495)
Q Consensus       115 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~-l~g~~p~~~~~l----~~L~~L~ls~N~-l~g~~p~~~~~l~~  188 (495)
                      .+|+.|||+++.++..--..+.++++|+.|+|+++. ++..--..+..+    ++|+.|+|+++. +|..--..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            467777777777765545567788999999999985 665433445543    368899999874 77554455777888


Q ss_pred             CCEEeccCCc
Q 040888          189 LKKLYLQNNQ  198 (495)
Q Consensus       189 L~~L~l~~N~  198 (495)
                      |+.|+|+++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999888875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.68  E-value=7.8e-05  Score=62.19  Aligned_cols=56  Identities=23%  Similarity=0.418  Sum_probs=43.6

Q ss_pred             EEECcCCCCC-CCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCC
Q 040888           97 YLDVSNNNLK-DSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLN  152 (495)
Q Consensus        97 ~L~Ls~N~l~-g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  152 (495)
                      .+|.+++.|+ ..+|..++++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5677777775 4677778888999999999998666666777888888888888764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.55  E-value=3e-05  Score=69.31  Aligned_cols=85  Identities=15%  Similarity=0.183  Sum_probs=38.2

Q ss_pred             CCCcEEECcCCcCCC----CcchhccCCCCCcEEEcccCcCCCc----cchhhhCCCCCcEEEccCC---cCCC----cC
Q 040888          115 PNLKHLDLSENQFSG----TVPYSISQMSELKYLNLGSNQLNGQ----LSDMFQKNEKLETLDLSKN---QLTG----EL  179 (495)
Q Consensus       115 ~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~L~~N~l~g~----~p~~~~~l~~L~~L~ls~N---~l~g----~~  179 (495)
                      ..|+.|+|++|+|..    .+...+..-+.|+.|+|++|.|+..    +-+.+...+.|+.|+|++|   .+..    .+
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i  149 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  149 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence            344444444444432    1222233334555555555555422    2233444455666666543   2221    12


Q ss_pred             cccccCCCCCCEEeccCCcc
Q 040888          180 PRSFASLSSLKKLYLQNNQF  199 (495)
Q Consensus       180 p~~~~~l~~L~~L~l~~N~l  199 (495)
                      -..+..-+.|+.|+++.|.+
T Consensus       150 a~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          150 MMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCCcCeEeccCCCc
Confidence            23334445666666665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.39  E-value=3e-05  Score=69.31  Aligned_cols=65  Identities=20%  Similarity=0.288  Sum_probs=37.0

Q ss_pred             hhccCCCCCcEEEcccCcCCC----ccchhhhCCCCCcEEEccCCcCCCc----CcccccCCCCCCEEeccCC
Q 040888          133 YSISQMSELKYLNLGSNQLNG----QLSDMFQKNEKLETLDLSKNQLTGE----LPRSFASLSSLKKLYLQNN  197 (495)
Q Consensus       133 ~~~~~l~~L~~L~L~~N~l~g----~~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N  197 (495)
                      ..+..-+.|+.|+|++|+|..    .+.+.+...+.|+.|+|+.|.|+..    +-..+..-+.|+.|+|++|
T Consensus        64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            344555666677777776652    2334455556677777777766532    2233444455667776644

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=97.27  E-value=0.00078  Score=63.04  Aligned_cols=91  Identities=12%  Similarity=0.055  Sum_probs=70.5

Q ss_pred             HHHhccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-CCCcceEEEEEEeCCEE
Q 040888          400 LLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-HTNIAELVGFCSEQGHN  478 (495)
Q Consensus       400 ~~~~t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~  478 (495)
                      +.....+|.....++.|+.+.||+.... ++.+++|.......  .....+.+|++++..++ |..+.++++++...+..
T Consensus         9 l~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~--~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~   85 (263)
T 3tm0_A            9 LKKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYK--GTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWS   85 (263)
T ss_dssp             HHHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGT--TSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEE
T ss_pred             HHHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccC--CCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCce
Confidence            3344567777778888889999999864 67899999865321  11235888999998884 67788899999998999


Q ss_pred             EEEEEecCCCCHhhh
Q 040888          479 ILIYDYYRNGSLHEF  493 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~  493 (495)
                      ++||||++|.+|.+.
T Consensus        86 ~lv~e~i~G~~l~~~  100 (263)
T 3tm0_A           86 NLLMSEADGVLCSEE  100 (263)
T ss_dssp             EEEEECCSSEEHHHH
T ss_pred             EEEEEecCCeehhhc
Confidence            999999999888763

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.14  E-value=0.0002  Score=62.74  Aligned_cols=82  Identities=12%  Similarity=0.100  Sum_probs=63.6

Q ss_pred             CCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCc-CCCcCcccccCC----CCCCEEeccCCc-ccccc-cccCCcc-
Q 040888          139 SELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQ-LTGELPRSFASL----SSLKKLYLQNNQ-FTGSI-NVLGKLP-  210 (495)
Q Consensus       139 ~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~l----~~L~~L~l~~N~-l~g~~-~~~~~~~-  210 (495)
                      -+|+.|||+++.++..--..+.++++|+.|+|+++. ++..--..++.+    ++|++|+|+++. +|..- ..+..++ 
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            579999999999886655667899999999999995 776544456654    479999999985 77533 4455556 


Q ss_pred             CcEEEeecCC
Q 040888          211 LDELNVENNK  220 (495)
Q Consensus       211 L~~l~l~~N~  220 (495)
                      |+.|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999875

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.97  E-value=0.0033  Score=62.72  Aligned_cols=129  Identities=14%  Similarity=0.225  Sum_probs=77.6

Q ss_pred             ccccCCCCCCcEEECcCCCCCCCCCC-CCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCC
Q 040888           86 GYQLTNLKSVSYLDVSNNNLKDSIPY-QLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKN  162 (495)
Q Consensus        86 ~~~~~~l~~L~~L~Ls~N~l~g~~p~-~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l  162 (495)
                      ...|.+++.|+.+++..+...  +.. .+.  ++|+.+.+. +.++..-...|.++.+|+.+.|..+ ++..-..+|.++
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~--I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C  333 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS--IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC  333 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE--ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             cceeeecccccEEecccccce--ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence            346777888888888765432  222 122  678888886 4455444556788888888888754 554445678888


Q ss_pred             CCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCccCcEEEeecCC
Q 040888          163 EKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNK  220 (495)
Q Consensus       163 ~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~L~~l~l~~N~  220 (495)
                      .+|+.+.|..+ ++..-...|.+|++|+.+++.+|..... .......|+.+.+..|.
T Consensus       334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~-~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN-AISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH-TCBCCCCC---------
T ss_pred             CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehh-hhhccCCCCEEEeCCCC
Confidence            88888888654 6644456788888888888887754311 11122225666555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.96  E-value=0.0014  Score=54.42  Aligned_cols=56  Identities=25%  Similarity=0.347  Sum_probs=31.0

Q ss_pred             EEEcccCcCC-CccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCccc
Q 040888          143 YLNLGSNQLN-GQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT  200 (495)
Q Consensus       143 ~L~L~~N~l~-g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~  200 (495)
                      .++.+++.|+ ..+|..+  ..+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4444455443 2333222  134666666666666555555666666777777777654

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=96.91  E-value=0.0008  Score=62.61  Aligned_cols=81  Identities=17%  Similarity=0.170  Sum_probs=59.8

Q ss_pred             CCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCc--ceEEEEEEeCCEEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNI--AELVGFCSEQGHNILIYD  483 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~ni--v~l~g~~~~~~~~~lv~e  483 (495)
                      ++....+.+.|..+.||+....+|..+++|......     ...+.+|++++..+++.++  .+++++...++..++|||
T Consensus        21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~~-----~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e   95 (264)
T 1nd4_A           21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGA-----LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLG   95 (264)
T ss_dssp             TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSCT-----TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEE
T ss_pred             CCceEecccCCCCceEEEEecCCCCeEEEEeCCccc-----chhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEE
Confidence            444333334566699999988778889999975431     2357788888888865554  458888887778899999


Q ss_pred             ecCCCCHh
Q 040888          484 YYRNGSLH  491 (495)
Q Consensus       484 y~~~GsL~  491 (495)
                      |+++.+|.
T Consensus        96 ~i~G~~l~  103 (264)
T 1nd4_A           96 EVPGQDLL  103 (264)
T ss_dssp             CCSSEETT
T ss_pred             ecCCcccC
Confidence            99998774

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.73  E-value=0.0051  Score=60.85  Aligned_cols=126  Identities=12%  Similarity=0.197  Sum_probs=79.2

Q ss_pred             ccccCCCCCCcEEECcCCCCCCCCCC-CCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCC
Q 040888           86 GYQLTNLKSVSYLDVSNNNLKDSIPY-QLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKN  162 (495)
Q Consensus        86 ~~~~~~l~~L~~L~Ls~N~l~g~~p~-~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l  162 (495)
                      ...+..+..|+.+.+..+ +. .++. .+.  ..|+.+.+..+ ++..-...|.++.+|+.+.+..+ +...-...|.++
T Consensus       210 ~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c  285 (379)
T 4h09_A          210 AYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGC  285 (379)
T ss_dssp             TTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTC
T ss_pred             ecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccc
Confidence            445667777888877654 22 1221 121  67888888765 54344556777888888888644 444445567788


Q ss_pred             CCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEe
Q 040888          163 EKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNV  216 (495)
Q Consensus       163 ~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l  216 (495)
                      .+|+.+.+.++.++..-...|.++.+|+.+.|..+ ++..- ..+.... |+.+.+
T Consensus       286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            88888888888777555667888888888888654 33222 3344433 555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.60  E-value=0.007  Score=60.32  Aligned_cols=123  Identities=13%  Similarity=0.213  Sum_probs=81.4

Q ss_pred             CEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCC-CC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEc
Q 040888           70 SVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQ-LP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNL  146 (495)
Q Consensus        70 ~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~-~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  146 (495)
                      .++.+.+.++-. -.-...|.+++.|+.+++.. .+. .|+.. +.  .+|+.++|..+ ++..-...|.+|.+|+.+.|
T Consensus       266 ~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          266 YLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             SCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             cccEEecccccc-eecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence            456666654332 23345688999999999974 444 34433 32  79999999865 66444567999999999999


Q ss_pred             ccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCccc
Q 040888          147 GSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT  200 (495)
Q Consensus       147 ~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~  200 (495)
                      ..+ ++..-..+|.++.+|+.+++.+|....   ..+..+.+|+.+.+..|.+.
T Consensus       342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             CTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred             Ccc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence            755 665556789999999999999987542   45778889999988877653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.53  E-value=0.0082  Score=59.77  Aligned_cols=142  Identities=15%  Similarity=0.132  Sum_probs=95.3

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCC-CC--CCCCcEEECcCCcCCCCcchhccCCCCCcEEE
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPY-QL--PPNLKHLDLSENQFSGTVPYSISQMSELKYLN  145 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~-~~--~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  145 (495)
                      ..++.+.+... ++..-...+.++..|+.+.+..+...  ++. .+  ...++.+.+..+.+.   ...+..+.+|+.+.
T Consensus       230 ~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~--i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~  303 (394)
T 4fs7_A          230 TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR--IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVK  303 (394)
T ss_dssp             CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE--ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEE
T ss_pred             CCCceEEECCC-ceecccccccccccceeEEcCCCcce--eeccccccccccceeccCceeec---cccccccccccccc
Confidence            35677777543 33333456788899999999877543  221 12  267777777766532   24577888899888


Q ss_pred             cccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecC
Q 040888          146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENN  219 (495)
Q Consensus       146 L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N  219 (495)
                      +..+ ++..-..+|.++.+|+.++|.++ ++..-...|.++.+|+.+++..| ++..- ..+.... |+.+++..+
T Consensus       304 l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          304 LLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             ECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             cccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            8765 55445567888889999998754 66455667888899999988776 44322 4555544 888888654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.41  E-value=0.03  Score=55.68  Aligned_cols=124  Identities=15%  Similarity=0.098  Sum_probs=72.4

Q ss_pred             ccCCCCCCcEEECcCCCCCCCCCCC-C--CCCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCC
Q 040888           88 QLTNLKSVSYLDVSNNNLKDSIPYQ-L--PPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEK  164 (495)
Q Consensus        88 ~~~~l~~L~~L~Ls~N~l~g~~p~~-~--~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~  164 (495)
                      .....+.|+.+.+..+. + .+... +  ...|+.+.+..+... .....|..+..|+.+.+..+.+.   ...|..+.+
T Consensus       225 ~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~  298 (394)
T 4fs7_A          225 FALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSS  298 (394)
T ss_dssp             TTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTT
T ss_pred             hhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccc
Confidence            34445667777765432 1 11111 1  267777777766543 44456677777777777665432   245667777


Q ss_pred             CcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecC
Q 040888          165 LETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENN  219 (495)
Q Consensus       165 L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N  219 (495)
                      |+.+.+..+ ++..-...|.++.+|+.++|..+ ++..- ..+.... |+.+++..|
T Consensus       299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            888877654 55444556777788888887644 43222 3444433 777776554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.05  E-value=0.028  Score=55.39  Aligned_cols=129  Identities=14%  Similarity=0.137  Sum_probs=77.6

Q ss_pred             ccCCCCCCcEEECcCCCCC-CCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCc
Q 040888           88 QLTNLKSVSYLDVSNNNLK-DSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLE  166 (495)
Q Consensus        88 ~~~~l~~L~~L~Ls~N~l~-g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~  166 (495)
                      .+.....+..+.+..+.-. +........+|+.+.+..+ +.......+.++.+|+.+.+..+ ++..-...|.++.+|+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~  266 (379)
T 4h09_A          189 SYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK  266 (379)
T ss_dssp             ECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred             cccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhc
Confidence            3445555555555433211 1111111267777777654 33334456777888888888765 5544456777788888


Q ss_pred             EEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecC
Q 040888          167 TLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENN  219 (495)
Q Consensus       167 ~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N  219 (495)
                      .+.+..+ ++..-...|.++.+|+.+.+.++.++... ..+.... |+.+++..+
T Consensus       267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence            8888654 54344456778888888888877766433 4444443 777777543

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=94.50  E-value=0.036  Score=54.22  Aligned_cols=80  Identities=10%  Similarity=0.287  Sum_probs=55.9

Q ss_pred             cceeccCCceEEEEEEcCCCCEEEEEEec--CcccccccHHHHHHHHHHHhcCC--CCCcceEEEEEEeC---CEEEEEE
Q 040888          410 GRLLGEGTIGRVYRAKYPDGKVLAVKKID--SSHFQRANSESFSEIVQNISRIR--HTNIAELVGFCSEQ---GHNILIY  482 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~~g~~vavK~l~--~~~~~~~~~~~f~~e~~~l~~l~--H~niv~l~g~~~~~---~~~~lv~  482 (495)
                      .+.++.|.++.||+....+ ..+++|+..  ..... .....+.+|.+++..++  +..+.++++++...   +..++||
T Consensus        43 ~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~-~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vm  120 (359)
T 3dxp_A           43 VEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLL-PSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIM  120 (359)
T ss_dssp             EEECCC-CCSCEEEEECSS-CEEEEECCCC-----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEE
T ss_pred             EEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCC-CcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEE
Confidence            5678999999999998865 577888775  33211 12346788999998887  45577888888766   3478999


Q ss_pred             EecCCCCHh
Q 040888          483 DYYRNGSLH  491 (495)
Q Consensus       483 ey~~~GsL~  491 (495)
                      ||+++..+.
T Consensus       121 e~v~G~~l~  129 (359)
T 3dxp_A          121 EFVSGRVLW  129 (359)
T ss_dssp             ECCCCBCCC
T ss_pred             EecCCeecC
Confidence            999987763

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=92.51  E-value=0.27  Score=46.27  Aligned_cols=78  Identities=17%  Similarity=0.254  Sum_probs=53.9

Q ss_pred             CcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCC---CcceEEEEEEeCCEEEEEEE
Q 040888          407 FATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT---NIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~---niv~l~g~~~~~~~~~lv~e  483 (495)
                      +.....+|.|..+.||+.++.+|+.|.||+-.....  .....|.+|.+.|..+.-.   -+.+++++  ..  .++|+|
T Consensus        17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~--~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~--~~--~~lv~e   90 (288)
T 3f7w_A           17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAP--ALDGLFRAEALGLDWLGRSFGSPVPQVAGW--DD--RTLAME   90 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCC--CCTTHHHHHHHHHHHHTCSTTCCSCCEEEE--ET--TEEEEE
T ss_pred             eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCc--chhhHHHHHHHHHHHHHhhCCCCcceEEec--cC--ceEEEE
Confidence            334577899999999999999999999998754322  1234578898888877422   23344433  33  368999


Q ss_pred             ecCCCCH
Q 040888          484 YYRNGSL  490 (495)
Q Consensus       484 y~~~GsL  490 (495)
                      |++.+..
T Consensus        91 ~l~~~~~   97 (288)
T 3f7w_A           91 WVDERPP   97 (288)
T ss_dssp             CCCCCCC
T ss_pred             eecccCC
Confidence            9987653

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=92.23  E-value=0.49  Score=45.23  Aligned_cols=76  Identities=16%  Similarity=0.251  Sum_probs=59.0

Q ss_pred             ccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCC---CCCcceEEEEEEeCCEEEEEEEec
Q 040888          409 TGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR---HTNIAELVGFCSEQGHNILIYDYY  485 (495)
Q Consensus       409 ~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~---H~niv~l~g~~~~~~~~~lv~ey~  485 (495)
                      ....|+.|.+..+|+... ++..++||.-...     ....|.+|.+.|..+.   ...+.++++++...+..++||||+
T Consensus        40 ~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~-----~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l  113 (312)
T 3jr1_A           40 HKEKLYSGEMNEIWLIND-EVQTVFVKINERS-----YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEAL  113 (312)
T ss_dssp             EEEEECCSSSSEEEEEES-SSCEEEEEEEEGG-----GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECC
T ss_pred             eeEEeCCccceeeeEEEE-CCCeEEEEeCCcc-----cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEec
Confidence            346789999999999987 4667888886532     2456888988887773   356778888888788899999999


Q ss_pred             CCCCH
Q 040888          486 RNGSL  490 (495)
Q Consensus       486 ~~GsL  490 (495)
                      ++..+
T Consensus       114 ~G~~~  118 (312)
T 3jr1_A          114 NKSKN  118 (312)
T ss_dssp             CCCCC
T ss_pred             cCCCC
Confidence            98764

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=91.46  E-value=0.66  Score=42.82  Aligned_cols=77  Identities=12%  Similarity=0.136  Sum_probs=55.7

Q ss_pred             ceeccCCce-EEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-CCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          411 RLLGEGTIG-RVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-HTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       411 ~~iG~G~~g-~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      ..+..|..| .||+.... ++..+.+|+-...     ...++.+|...|..+. +--+.++++++...+..++|||++++
T Consensus        30 ~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~-----~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G  104 (272)
T 4gkh_A           30 ARDNVGQSGATIYRLYGKPNAPELFLKHGKGS-----VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPG  104 (272)
T ss_dssp             EEEECSSSSCEEEEEECCTTCCCEEEEEEETH-----HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCS
T ss_pred             EEccCCCcCCeEEEEEecCCCeEEEEEECCCC-----CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCC
Confidence            345556665 68988764 4667888886543     2456788888888774 22355788999999999999999998


Q ss_pred             CCHhh
Q 040888          488 GSLHE  492 (495)
Q Consensus       488 GsL~~  492 (495)
                      .++.+
T Consensus       105 ~~~~~  109 (272)
T 4gkh_A          105 KTAFQ  109 (272)
T ss_dssp             EEHHH
T ss_pred             ccccc
Confidence            77654

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=90.62  E-value=0.03  Score=57.06  Aligned_cols=62  Identities=6%  Similarity=-0.039  Sum_probs=18.1

Q ss_pred             cceeccCCceEEEEEEcCC-CCEEEE------EEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe
Q 040888          410 GRLLGEGTIGRVYRAKYPD-GKVLAV------KKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE  474 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~~-g~~vav------K~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~  474 (495)
                      .+.+|   ||.||+|.+.. ...|||      |....+.......+.|.+|..++...+|||+++.+++...
T Consensus       147 ~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~  215 (463)
T 3cxl_A          147 YEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH  215 (463)
T ss_dssp             TTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred             cccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence            45566   99999999854 467888      7776544433334678899999999999999999988764

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=87.91  E-value=0.57  Score=46.26  Aligned_cols=77  Identities=8%  Similarity=0.090  Sum_probs=49.0

Q ss_pred             cceeccCCceEEEEEEcC-CCCEEEEEEecCccc----c-cccHHHHHHHHHHHhcCCC--CCcc-eEEEEEEeCCEEEE
Q 040888          410 GRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHF----Q-RANSESFSEIVQNISRIRH--TNIA-ELVGFCSEQGHNIL  480 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~----~-~~~~~~f~~e~~~l~~l~H--~niv-~l~g~~~~~~~~~l  480 (495)
                      .+.+|.|.++.||++... +++.++||.......    . ......+..|.+++..+.+  +..+ +++.+  ..+..++
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l  112 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  112 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence            467899999999999874 468899998653211    0 0113456778888887632  4444 44433  3445689


Q ss_pred             EEEecCCC
Q 040888          481 IYDYYRNG  488 (495)
Q Consensus       481 v~ey~~~G  488 (495)
                      ||||+++.
T Consensus       113 vmE~l~g~  120 (397)
T 2olc_A          113 VMEDLSHL  120 (397)
T ss_dssp             EECCCTTS
T ss_pred             EEEeCCCc
Confidence            99999764

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=83.40  E-value=2.2  Score=40.37  Aligned_cols=75  Identities=17%  Similarity=0.158  Sum_probs=53.3

Q ss_pred             cceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCC---CcceEEEEEE-eCCEEEEEEEec
Q 040888          410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT---NIAELVGFCS-EQGHNILIYDYY  485 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~---niv~l~g~~~-~~~~~~lv~ey~  485 (495)
                      ...++.|....||+.    |..+++|.-...    .....+.+|.++|..+++.   .+.+++.++. ..+..++||||+
T Consensus        24 v~~l~~G~~n~v~~v----g~~~VlR~~~~~----~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i   95 (306)
T 3tdw_A           24 VESLGEGFRNYAILV----NGDWVFRFPKSQ----QGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKV   95 (306)
T ss_dssp             EEEEEECSSEEEEEE----TTTEEEEEESSH----HHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECC
T ss_pred             eeecCCCcceeEEEE----CCEEEEEecCCc----hHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEecc
Confidence            356788999999988    456778874321    1245788999999998753   2456676664 345578999999


Q ss_pred             CCCCHhh
Q 040888          486 RNGSLHE  492 (495)
Q Consensus       486 ~~GsL~~  492 (495)
                      ++..+.+
T Consensus        96 ~G~~l~~  102 (306)
T 3tdw_A           96 QGQILGE  102 (306)
T ss_dssp             CSEECHH
T ss_pred             CCeECch
Confidence            9877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	495
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-18
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	8e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-06
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	5e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	2e-16
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	8e-16
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-15
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-15
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	1e-15
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	3e-15
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	4e-15
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	6e-15
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	1e-14
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-14
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-14
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	1e-14
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-14
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	2e-14
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	3e-14
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	4e-14
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	5e-14
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	6e-14
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	9e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-07
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	1e-13
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	2e-13
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-13
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	3e-13
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	3e-13
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	3e-13
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	5e-13
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	6e-13
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	7e-13
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	7e-13
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	7e-13
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-13
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	1e-12
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-12
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-12
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-12
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	2e-12
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	2e-12
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	2e-12
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	4e-12
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	7e-12
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	1e-11
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	3e-11
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	8e-11
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-10
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	2e-10
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	3e-10
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	3e-10
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	6e-10
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	6e-10
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	7e-10
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	8e-10
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	9e-10
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-09
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-09
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	2e-09
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	3e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	5e-09
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	8e-09
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	2e-08
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	2e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-04
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	7e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	9e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (203), Expect = 2e-18
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
           +    + LG G  G V   K+     +A+K I          + F E  + +  + H  +
Sbjct: 5   DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE---DEFIEEAKVMMNLSHEKL 61

Query: 466 AELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
            +L G C++Q    +I +Y  NG L  +L 
Sbjct: 62  VQLYGVCTKQRPIFIITEYMANGCLLNYLR 91

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (200), Expect = 8e-18
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
                + +G G  G V+   + +   +A+K I          E F E  + + ++ H  +
Sbjct: 6   ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE---EDFIEEAEVMMKLSHPKL 62

Query: 466 AELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
            +L G C EQ    L++++  +G L ++L 
Sbjct: 63  VQLYGVCLEQAPICLVFEFMEHGCLSDYLR 92

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 79.8 bits (195), Expect = 4e-17
 Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 10/181 (5%)

Query: 26  DSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSS----VTEIKLSGLGL 81
           + QD  AL  +   L +P+ LS+W     D C   W G+ C   +    V  + LSGL L
Sbjct: 4   NPQDKQALLQIKKDLGNPTTLSSWLPTT-DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62

Query: 82  NG--QLGYQLTNLKSVSYLDVSNN-NLKDSIP--YQLPPNLKHLDLSENQFSGTVPYSIS 136
                +   L NL  +++L +    NL   IP        L +L ++    SG +P  +S
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122

Query: 137 QMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQN 196
           Q+  L  L+   N L+G L         L  +    N+++G +P S+ S S L      +
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182

Query: 197 N 197
            
Sbjct: 183 R 183

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 63.6 bits (153), Expect = 1e-11
 Identities = 24/121 (19%), Positives = 33/121 (27%), Gaps = 1/121 (0%)

Query: 102 NNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQK 161
            N L   IP                        +    +       +             
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242

Query: 162 NEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNK 220
           ++ L  LDL  N++ G LP+    L  L  L +  N   G I   G L   D     NNK
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

Query: 221 F 221
            
Sbjct: 303 C 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.5 bits (106), Expect = 8e-06
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 3/80 (3%)

Query: 57  CGEHWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPY--QLP 114
                 G      ++  + L    + G L   LT LK +  L+VS NNL   IP    L 
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL- 290

Query: 115 PNLKHLDLSENQFSGTVPYS 134
                   + N+     P  
Sbjct: 291 QRFDVSAYANNKCLCGSPLP 310

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.4 bits (195), Expect = 5e-17
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 14/115 (12%)

Query: 394 PFSMADLLTATANFAT---------GRLLGEGTIGRVYRAKYP----DGKVLAVKKIDSS 440
           PF+  D   A   FA           +++G G  G V              +A+K + S 
Sbjct: 6   PFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSG 65

Query: 441 HFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           + ++   +  SE    + +  H N+  L G  ++    ++I ++  NGSL  FL 
Sbjct: 66  YTEKQRRDFLSEA-SIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLR 119

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 79.7 bits (195), Expect = 1e-16
 Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 26/152 (17%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVP---------------- 132
           L +L +++ LD++NN + +  P      L  L L  NQ S   P                
Sbjct: 237 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 296

Query: 133 ----YSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSS 188
                 IS +  L YL L  N ++           KL+ L  + N+++     S A+L++
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTN 352

Query: 189 LKKLYLQNNQFTGSINVLGKLP-LDELNVENN 219
           +  L   +NQ +     L  L  + +L + + 
Sbjct: 353 INWLSAGHNQISDLTP-LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.9 bits (180), Expect = 7e-15
 Identities = 34/168 (20%), Positives = 69/168 (41%), Gaps = 11/168 (6%)

Query: 33  LNVMYTSLHSPSQLSNWKAGGG-DPCGEHWKGIT--CSGSSVTEIKLSGLGLNGQLGYQL 89
           L++    L     L++       D        +      + +TE+KL    ++      L
Sbjct: 224 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--L 281

Query: 90  TNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSN 149
             L +++ L+++ N L+D  P     NL +L L  N  S   P  +S +++L+ L   +N
Sbjct: 282 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANN 339

Query: 150 QLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNN 197
           +++            +  L    NQ++   P   A+L+ + +L L + 
Sbjct: 340 KVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.7 bits (164), Expect = 8e-13
 Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 26/154 (16%)

Query: 91  NLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQ 150
            L ++  L  +NN + D  P  +  NL  L L+ NQ       +++ ++ L  L+L +NQ
Sbjct: 195 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQ 252

Query: 151 LNGQLSDMFQKNEKLETLDLSKNQLTGELP--------------------RSFASLSSLK 190
           ++           KL  L L  NQ++   P                       ++L +L 
Sbjct: 253 ISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 310

Query: 191 KLYLQNNQFTGSINVLGKLP-LDELNVENNKFSG 223
            L L  N  +     +  L  L  L   NNK S 
Sbjct: 311 YLTLYFNNISDISP-VSSLTKLQRLFFANNKVSD 343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLN 145
            T+L  V+ L      +K     +   NL  ++ S NQ +   P  +  +++L  + 
Sbjct: 40  QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDIL 94

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 163 EKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKF 221
            +     L K  +T  + ++   L  +  L         SI+ +  L  L ++N  NN+ 
Sbjct: 22  AEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNNQL 78

Query: 222 SGWVP 226
           +   P
Sbjct: 79  TDITP 83

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 136 SQMSELKYLNLGSNQLNGQLSDMFQKN-EKLETLDLSKNQLTGELPRSFASLSSLKKLYL 194
           + ++E     LG   +   +S   Q + +++ TL   +  +   +      L++L ++  
Sbjct: 19  TALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINF 73

Query: 195 QNNQFTGSINVLGKLPLDELNVENNKFSGW 224
            NNQ T    +     L ++ + NN+ +  
Sbjct: 74  SNNQLTDITPLKNLTKLVDILMNNNQIADI 103

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 4/85 (4%)

Query: 90  TNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSN 149
           T L       +   N+ D++       +  L              +  ++ L  +N  +N
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN 76

Query: 150 QLNGQLSDMFQKNEKLETLDLSKNQ 174
           QL        +   KL  + ++ NQ
Sbjct: 77  QLTD--ITPLKNLTKLVDILMNNNQ 99

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.0 bits (189), Expect = 2e-16
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 4/90 (4%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
                  LG G  G V+   Y     +AVK +          ++F      + +++H  +
Sbjct: 14  TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSP---DAFLAEANLMKQLQHQRL 70

Query: 466 AELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             L    +++    +I +Y  NGSL +FL 
Sbjct: 71  VRLYAVVTQEPI-YIITEYMENGSLVDFLK 99

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (185), Expect = 8e-16
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
               G+ +G G+ G VY+ K+     +AVK ++ +       ++F   V  + + RH NI
Sbjct: 9   QITVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI 66

Query: 466 AELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
              +G+ +      ++  +    SL+  LH
Sbjct: 67  LLFMGYSTA-PQLAIVTQWCEGSSLYHHLH 95

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (183), Expect = 1e-15
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
                + +G+G  G V    Y  G  +AVK I +        ++F      ++++RH+N+
Sbjct: 8   ELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATA----QAFLAEASVMTQLRHSNL 62

Query: 466 AELVGFCSEQGHNI-LIYDYYRNGSLHEFLH 495
            +L+G   E+   + ++ +Y   GSL ++L 
Sbjct: 63  VQLLGVIVEEKGGLYIVTEYMAKGSLVDYLR 93

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (183), Expect = 1e-15
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANS-ESFSEIVQNISRIRHT 463
           +F  G++LGEG+   V  A+     +  A+K ++  H  + N     +     +SR+ H 
Sbjct: 9   DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 68

Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
              +L     +         Y +NG L +++ 
Sbjct: 69  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIR 100

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (183), Expect = 1e-15
 Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
           ++     +G G+ GR  + +   DGK+L  K++D      A  +     V  +  ++H N
Sbjct: 5   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN 64

Query: 465 IAELVGFCSEQGHNI--LIYDYYRNGSLHEFLH 495
           I        ++ +    ++ +Y   G L   + 
Sbjct: 65  IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVIT 97

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (182), Expect = 3e-15
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 2/91 (2%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
           +F     LG G  G V++  + P G V+A K I         ++   E+ Q +       
Sbjct: 7   DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIREL-QVLHECNSPY 65

Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           I    G     G   +  ++   GSL + L 
Sbjct: 66  IVGFYGAFYSDGEISICMEHMDGGSLDQVLK 96

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.9 bits (181), Expect = 4e-15
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 410 GRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAEL 468
             +LG G    V  A+     K++A+K I     +       +EI   + +I+H NI  L
Sbjct: 14  RDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEI-AVLHKIKHPNIVAL 72

Query: 469 VGFCSEQGHNILIYDYYRNGSLHEFLH 495
                  GH  LI      G L + + 
Sbjct: 73  DDIYESGGHLYLIMQLVSGGELFDRIV 99

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (178), Expect = 6e-15
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 8/90 (8%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
              +G+G  G V+R K+  G+ +AVK   S   +    E  +EI      +RH NI   +
Sbjct: 8   QESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFRE--AEI-YQTVMLRHENILGFI 63

Query: 470 GFCSEQGHNI----LIYDYYRNGSLHEFLH 495
              ++         L+ DY+ +GSL ++L+
Sbjct: 64  AADNKDNGTWTQLWLVSDYHEHGSLFDYLN 93

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (177), Expect = 1e-14
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 406 NFATGRLLGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISR 459
             + G+ LG G  G+V  A             +AVK +  S          SE+      
Sbjct: 24  RLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYL 83

Query: 460 IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             H NI  L+G C+  G  ++I +Y   G L  FL 
Sbjct: 84  GNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLR 119

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (175), Expect = 1e-14
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANS-ESFSEIVQNISRIRHT 463
           +F  GR LG+G  G VY A+      +LA+K +  +  ++A         V+  S +RH 
Sbjct: 7   DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 66

Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           NI  L G+  +     LI +Y   G+++  L 
Sbjct: 67  NILRLYGYFHDATRVYLILEYAPLGTVYRELQ 98

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 1e-14
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 411 RLLGEGTIGRVYRAKYPD---GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
           + LG G  G V +  Y      K +AVK + +     A  +        + ++ +  I  
Sbjct: 13  KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVR 72

Query: 468 LVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           ++G C E    +L+ +    G L+++L 
Sbjct: 73  MIGIC-EAESWMLVMEMAELGPLNKYLQ 99

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.8 bits (178), Expect = 1e-14
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFS----EIVQNISRI 460
           +F+  R++G G  G VY  +  D GK+ A+K +D    +    E+ +     ++  +S  
Sbjct: 5   DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG 64

Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
               I  +            I D    G LH  L 
Sbjct: 65  DCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLS 99

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.7 bits (175), Expect = 2e-14
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
           +      LG G  G VY   +      +AVK +     +    E F +    +  I+H N
Sbjct: 18  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV---EEFLKEAAVMKEIKHPN 74

Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           + +L+G C+ +    +I ++   G+L ++L 
Sbjct: 75  LVQLLGVCTREPPFYIITEFMTYGNLLDYLR 105

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 2e-14
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPD------GKVLAVKKIDSSHFQRANSESFSEIVQNISR 459
           N   G++LG G  G+V  A             +AVK +             SE+      
Sbjct: 38  NLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQL 97

Query: 460 IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             H NI  L+G C+  G   LI++Y   G L  +L 
Sbjct: 98  GSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLR 133

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.0 bits (173), Expect = 3e-14
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 7/96 (7%)

Query: 406 NFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISR 459
           N    R +GEG  GRV++A+ P         ++AVK +         ++   E    ++ 
Sbjct: 14  NIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREA-ALMAE 72

Query: 460 IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             + NI +L+G C+      L+++Y   G L+EFL 
Sbjct: 73  FDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLR 108

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.8 bits (173), Expect = 4e-14
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 407 FATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANS-ESFSEIVQNISRIRHTN 464
           F+  R +G G+ G VY A+   + +V+A+KK+  S  Q     +   + V+ + ++RH N
Sbjct: 17  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76

Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             +  G    +    L+ +Y    +      
Sbjct: 77  TIQYRGCYLREHTAWLVMEYCLGSASDLLEV 107

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (171), Expect = 5e-14
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
           +      LG+G  G V+   +     +A+K +          E+F +  Q + ++RH  +
Sbjct: 18  SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP---EAFLQEAQVMKKLRHEKL 74

Query: 466 AELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
            +L    S +    ++ +Y   GSL +FL 
Sbjct: 75  VQLYAVVS-EEPIYIVTEYMSKGSLLDFLK 103

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 70.9 bits (173), Expect = 6e-14
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
           ++     LG G  G V+R      G   A K + + H    + E+  + +Q +S +RH  
Sbjct: 27  HYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHES--DKETVRKEIQTMSVLRHPT 84

Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           +  L     +    ++IY++   G L E + 
Sbjct: 85  LVNLHDAFEDDNEMVMIYEFMSGGELFEKVA 115

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 69.5 bits (169), Expect = 9e-14
 Identities = 18/90 (20%), Positives = 37/90 (41%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
            +     +GEGT G VY+A+   G+  A+KKI           +    +  +  ++H+NI
Sbjct: 3   KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNI 62

Query: 466 AELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
            +L      +   +L++++           
Sbjct: 63  VKLYDVIHTKKRLVLVFEHLDQDLKKLLDV 92

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.7 bits (169), Expect = 1e-13
 Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 2/162 (1%)

Query: 94  SVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNG 153
            +  +  S+  L+  +P  LPP+   LDL  N+ +         +  L  L L +N+++ 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 154 QLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLPLD 212
                F    KLE L LSKNQL     +   +L  L+    +  +   S+ N L ++ + 
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 213 ELNVENNKFSGWVPEELKDIAKTGGNSWSSSPAPPPPPGTKP 254
           EL     K SG      + + K      + +     P G  P
Sbjct: 130 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP 171

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.4 bits (163), Expect = 6e-13
 Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 10/154 (6%)

Query: 79  LGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQM 138
           L  +G        +K +SY+ +++ N+  +IP  LPP+L  L L  N+ +     S+  +
Sbjct: 136 LKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGL 194

Query: 139 SELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQ 198
           + L  L L  N ++   +        L  L L+ N+L    P   A    ++ +YL NN 
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNN 253

Query: 199 FTG-------SINVLGKLP-LDELNVENNKFSGW 224
            +              K      +++ +N    W
Sbjct: 254 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 287

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.1 bits (152), Expect = 1e-11
 Identities = 33/187 (17%), Positives = 65/187 (34%), Gaps = 15/187 (8%)

Query: 56  PCGEHWKGITCSGSSVTEI-----------KLSGLGLNGQLGYQLTNLKSVSYLDVSNNN 104
            C  H + + CS   + ++            L    +         NLK++  L + NN 
Sbjct: 7   RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 105 LKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKN 162
           +    P        L+ L LS+NQ           + EL+       ++   + +   + 
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126

Query: 163 EKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFS 222
             +E L  +  + +G    +F  +  L  + + +   T     L    L EL+++ NK +
Sbjct: 127 IVVE-LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS-LTELHLDGNKIT 184

Query: 223 GWVPEEL 229
                 L
Sbjct: 185 KVDAASL 191

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 3e-07
 Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 30/159 (18%)

Query: 69  SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSEN--- 125
            ++  + L    ++         L  +  L +S N LK  +P ++P  L+ L + EN   
Sbjct: 55  KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEIT 113

Query: 126 -----------------------QFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKN 162
                                  + SG    +   M +L Y+ +    +      +    
Sbjct: 114 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS- 172

Query: 163 EKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG 201
             L  L L  N++T     S   L++L KL L  N  + 
Sbjct: 173 --LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (168), Expect = 1e-13
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 406 NFATGRLLGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISR 459
                R LG+G+ G VY               +A+K ++ +   R   E  +E    +  
Sbjct: 21  KITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA-SVMKE 79

Query: 460 IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
               ++  L+G  S+    ++I +    G L  +L 
Sbjct: 80  FNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLR 115

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (167), Expect = 2e-13
 Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 411 RLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
             +G+G  G VY A     G+ +A+++++     +   E     +  +   ++ NI   +
Sbjct: 26  EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKK--ELIINEILVMRENKNPNIVNYL 83

Query: 470 GFCSEQGHNILIYDYYRNGSLHEFLH 495
                     ++ +Y   GSL + + 
Sbjct: 84  DSYLVGDELWVVMEYLAGGSLTDVVT 109

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 68.9 bits (168), Expect = 2e-13
 Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 410 GRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAEL 468
              LG G  G V+R      G+V   K I++ +    +  +    +  ++++ H  +  L
Sbjct: 34  LEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPL--DKYTVKNEISIMNQLHHPKLINL 91

Query: 469 VGFCSEQGHNILIYDYYRNGSLHEFLH 495
                ++   +LI ++   G L + + 
Sbjct: 92  HDAFEDKYEMVLILEFLSGGELFDRIA 118

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (167), Expect = 3e-13
 Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANS--ESFSEIVQNISRIRH 462
           +F   ++LG+G+ G+V+ A++    +  A+K +        +    +  E         H
Sbjct: 3   DFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEH 62

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
             +  +      + +   + +Y   G L   + 
Sbjct: 63  PFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQ 95

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (165), Expect = 3e-13
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 8/98 (8%)

Query: 406 NFATGRLLGEGTIGRVYRAKYP--------DGKVLAVKKIDSSHFQRANSESFSEIVQNI 457
               G+ LGEG  G+V  A+              +AVK + S   ++  S+  SE+    
Sbjct: 14  RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 73

Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
              +H NI  L+G C++ G   +I +Y   G+L E+L 
Sbjct: 74  MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 111

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 3e-13
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPDGK----VLAVKKIDSSHFQRANSESFSEIVQNISRIR 461
           +F    ++G G  G VY     D        AVK ++        S+  +E    +    
Sbjct: 30  HF--NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEG-IIMKDFS 86

Query: 462 HTNIAELVGFCSE-QGHNILIYDYYRNGSLHEFLH 495
           H N+  L+G C   +G  +++  Y ++G L  F+ 
Sbjct: 87  HPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIR 121

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (162), Expect = 5e-13
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 410 GRLLGEGTIGRVYRAKYPD----GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
           GR +GEG  G V++  Y         +A+K   +        +   E    + +  H +I
Sbjct: 12  GRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEA-LTMRQFDHPHI 70

Query: 466 AELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
            +L+G  +E     +I +    G L  FL 
Sbjct: 71  VKLIGVITE-NPVWIIMELCTLGELRSFLQ 99

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 6e-13
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 413 LGEGTIGRVYRAKY---PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
           LG G  G V +  Y        +A+K +     +    E   E  Q + ++ +  I  L+
Sbjct: 17  LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREA-QIMHQLDNPYIVRLI 75

Query: 470 GFCSEQGHNILIYDYYRNGSLHEFLH 495
           G C +    +L+ +    G LH+FL 
Sbjct: 76  GVC-QAEALMLVMEMAGGGPLHKFLV 100

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 7e-13
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPDGKVL---AVKKIDSSHFQRANSESFSEIVQNISRIRH 462
           +     ++GEG  G+V +A+     +    A+K++     +  + +   E+        H
Sbjct: 11  DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHH 70

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
            NI  L+G C  +G+  L  +Y  +G+L +FL 
Sbjct: 71  PNIINLLGACEHRGYLYLAIEYAPHGNLLDFLR 103

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (162), Expect = 7e-13
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
           ++   + LGEG  G V  A      + +AVK +D             EI      + H N
Sbjct: 6   DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEI-CINKMLNHEN 64

Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           + +  G   E     L  +Y   G L + + 
Sbjct: 65  VVKFYGHRREGNIQYLFLEYCSGGELFDRIE 95

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 7e-13
 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 406 NFATGRLLGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISR 459
               G+ LG G  G+V  A           + +AVK +        +    SE+   I  
Sbjct: 14  RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHI 73

Query: 460 IRHTNIAELVGFCSEQGHNILI-YDYYRNGSLHEFLH 495
             H N+  L+G C++ G  +++  ++ + G+L  +L 
Sbjct: 74  GHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLR 110

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.2 bits (153), Expect = 8e-13
 Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 4/114 (3%)

Query: 97  YLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLS 156
            L +++ +L      +    + HLDLS N+     P +++ +  L+ L    N L     
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDG 60

Query: 157 DMFQKNEKLETLDLSKNQLTG-ELPRSFASLSSLKKLYLQNNQFTGSINVLGKL 209
                  +   L L  N+L      +   S   L  L LQ N       +  +L
Sbjct: 61  VANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPY-SISQMSELKYLNL 146
            L  L  V++LD+S+N L+   P      L+ L++ +   +       ++ +  L+ L L
Sbjct: 15  HLEQLLLVTHLDLSHNRLRALPP--ALAALRCLEVLQASDNALENVDGVANLPRLQELLL 72

Query: 147 GSNQLNG-QLSDMFQKNEKLETLDLSKNQLTGE---LPRSFASLSSLKKL 192
            +N+L             +L  L+L  N L  E     R    L S+  +
Sbjct: 73  CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 1e-12
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPDG-----KVLAVKKIDSSHFQRANSESFSEIVQNISRI 460
                +++G G  G VY+             +A+K + + + ++   +   E    + + 
Sbjct: 8   CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEA-GIMGQF 66

Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
            H NI  L G  S+    ++I +Y  NG+L +FL 
Sbjct: 67  SHHNIIRLEGVISKYKPMMIITEYMENGALDKFLR 101

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (161), Expect = 1e-12
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 407 FATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQN----ISRIR 461
           + TG  LG G    V + +    G   A K I     + +      E ++     +  I+
Sbjct: 12  YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ 71

Query: 462 HTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           H N+  L      +   ILI +    G L +FL 
Sbjct: 72  HPNVITLHEVYENKTDVILILELVAGGELFDFLA 105

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (162), Expect = 1e-12
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 410 GRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAEL 468
              LG G  G V+R       K    K +      +       + +  ++  RH NI  L
Sbjct: 10  AEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQ---VLVKKEISILNIARHRNILHL 66

Query: 469 VGFCSEQGHNILIYDYYRNGSLHEFLH 495
                     ++I+++     + E ++
Sbjct: 67  HESFESMEELVMIFEFISGLDIFERIN 93

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (159), Expect = 2e-12
 Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 410 GRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAEL 468
              +G G+   VY+    +    +A  ++      ++  + F E  + +  ++H NI   
Sbjct: 14  DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRF 73

Query: 469 VGFC----SEQGHNILIYDYYRNGSLHEFLH 495
                     +   +L+ +   +G+L  +L 
Sbjct: 74  YDSWESTVKGKKCIVLVTELMTSGTLKTYLK 104

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 65.5 bits (159), Expect = 2e-12
 Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 410 GRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANS-ESFSEIVQNISRIRHTNIAE 467
           G +LG G +  V+ A+     + +AVK + +   +  +    F    QN + + H  I  
Sbjct: 12  GEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVA 71

Query: 468 LVGFCSEQGHNI----LIYDYYRNGSLHEFLH 495
           +      +        ++ +Y    +L + +H
Sbjct: 72  VYDTGEAETPAGPLPYIVMEYVDGVTLRDIVH 103

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (159), Expect = 2e-12
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 406 NFATGRLLGEGTIGRVYRAKYP----DGKVLAVKKIDSSHFQRANS-ESFSEIVQNISRI 460
           +      LG+G+ G V R ++         +AVK +      +  + + F   V  +  +
Sbjct: 9   DLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSL 68

Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
            H N+  L G         ++ +    GSL + L 
Sbjct: 69  DHRNLIRLYGVVLT-PPMKMVTELAPLGSLLDRLR 102

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (159), Expect = 2e-12
 Identities = 17/91 (18%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
            +     LG+G  G+VY+A+  +   + A K ID+   +    E +   +  ++   H N
Sbjct: 13  FWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEEL--EDYMVEIDILASCDHPN 70

Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           I +L+     + +  ++ ++   G++   + 
Sbjct: 71  IVKLLDAFYYENNLWILIEFCAGGAVDAVML 101

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.7 bits (157), Expect = 4e-12
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 2/92 (2%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANS-ESFSEIVQNISRIRHT 463
           +F   R LG G+ GRV+  +   +G+  A+K +      R    E  ++    +S + H 
Sbjct: 5   DFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHP 64

Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
            I  + G   +     +I DY   G L   L 
Sbjct: 65  FIIRMWGTFQDAQQIFMIMDYIEGGELFSLLR 96

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 7e-12
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
           NF     +GEGT G VY+A+    G+V+A+KKI           +    +  +  + H N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           I +L+     +   + +   + +  L +F+ 
Sbjct: 63  IVKLLDVIHTENK-LYLVFEFLHQDLKKFMD 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (154), Expect = 1e-11
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 10/94 (10%)

Query: 116 NLKHLDLSENQFSGT-VPYSISQMSELKYLNLGSNQLNGQ----LSDMFQKNEKLETLDL 170
           +++ LD+   + S       +  + + + + L    L       +S   + N  L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 171 SKNQLTGELPRSFASL-----SSLKKLYLQNNQF 199
             N+L                  ++KL LQN   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (133), Expect = 4e-09
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 112 QLPPNLKHLDLSENQFSGT----VPYSISQMSELKYLNLGSNQLNGQ----LSDMFQKNE 163
           Q    L+ L L++   S +    +  ++     L+ L+L +N L       L +  ++  
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 164 -KLETLDLSKNQLTGELPRSFASLSSLK 190
             LE L L     + E+     +L   K
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (133), Expect = 5e-09
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 9/75 (12%)

Query: 138 MSELKYLNLGSNQLNGQ----LSDMFQKNEKLETLDLSKNQLTGELPRSFAS-----LSS 188
            S L+ L L    ++      L+     N  L  LDLS N L                  
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 189 LKKLYLQNNQFTGSI 203
           L++L L +  ++  +
Sbjct: 428 LEQLVLYDIYWSEEM 442

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (130), Expect = 1e-08
 Identities = 9/68 (13%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 140 ELKYLNLGSNQLN-GQLSDMFQKNEKLETLDLSKNQLTGE----LPRSFASLSSLKKLYL 194
           +++ L++   +L+  + +++    ++ + + L    LT      +  +     +L +L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 195 QNNQFTGS 202
           ++N+    
Sbjct: 63  RSNELGDV 70

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 2e-07
 Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 11/88 (12%)

Query: 158 MFQKNEKLETLDLSKNQLTGE----LPRSFASLSSLKKLYLQNNQFTGS-INVLGKL--- 209
           + Q    L  L L+   ++      L  +  +  SL++L L NN    + I  L +    
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 210 ---PLDELNVENNKFSGWVPEELKDIAK 234
               L++L + +  +S  + + L+ + K
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 5e-07
 Identities = 22/147 (14%), Positives = 43/147 (29%), Gaps = 17/147 (11%)

Query: 41  HSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDV 100
                 S   A          +        ++  +L   G+             +  L +
Sbjct: 317 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 376

Query: 101 SNNNLKDSIPYQLP------PNLKHLDLSENQFSGTVPYSISQ-----MSELKYLNLGSN 149
           ++ ++ DS    L        +L+ LDLS N         + +        L+ L L   
Sbjct: 377 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 436

Query: 150 QLNGQLSDMFQKNEKLETLDLSKNQLT 176
             + ++ D       L+ L+  K  L 
Sbjct: 437 YWSEEMEDR------LQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 2e-05
 Identities = 12/93 (12%), Positives = 33/93 (35%), Gaps = 12/93 (12%)

Query: 70  SVTEIKLSGLGLN-GQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP------PNLKHLDL 122
            +  + +    L+  +    L  L+    + + +  L ++    +       P L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 123 SENQFSGTVPYSISQM-----SELKYLNLGSNQ 150
             N+      + + Q       +++ L+L +  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 62.8 bits (152), Expect = 1e-11
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 9/99 (9%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISR----- 459
           N+    +LG G    V R  + P  K  AVK ID +     ++E   E+ +   +     
Sbjct: 4   NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 63

Query: 460 ---IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
                H NI +L           L++D  + G L ++L 
Sbjct: 64  RKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLT 102

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 3e-11
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 407 FATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
           +     +GEG  G V  A    +   +A+KKI     Q     +  EI + + R RH NI
Sbjct: 10  YTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREI-KILLRFRHENI 68

Query: 466 AELVGFC----SEQGHNILIYDYYRNGSLHEFLH 495
             +         EQ  ++ +  +     L++ L 
Sbjct: 69  IGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLK 102

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 8e-11
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 411 RLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEI---VQNISRIRHTNIA 466
             LGEG    VY+A+     +++A+KKI   H   A           ++ +  + H NI 
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63

Query: 467 ELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
            L+     + +  L++D+           
Sbjct: 64  GLLDAFGHKSNISLVFDFMETDLEVIIKD 92

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 1e-10
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 13/97 (13%)

Query: 406 NFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
           ++   +++G G+ G VY+AK  D G+++A+KK+     +  N E     +Q + ++ H N
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK-RFKNRE-----LQIMRKLDHCN 74

Query: 465 IAELVGFCSEQGHN------ILIYDYYRNGSLHEFLH 495
           I  L  F    G         L+ DY          H
Sbjct: 75  IVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARH 111

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 2e-10
 Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 396 SMADLLTATANFATGRLLGEGTIGRVYRAKY-PDGKVL----AVKKIDSSHFQRANSESF 450
           ++  +L  T  F   ++LG G  G VY+  + P+G+ +    A+K++  +   +AN E  
Sbjct: 1   ALLRILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEIL 59

Query: 451 SEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
            E    ++ + + ++  L+G C       LI      G L +++ 
Sbjct: 60  DEA-YVMASVDNPHVCRLLGICLT-STVQLITQLMPFGCLLDYVR 102

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (143), Expect = 3e-10
 Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 13/93 (13%)

Query: 409 TGRLLGEGTIGRVYRAKY-PDGKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRHTNIA 466
           T ++LG G  G+V +       +  A+K + D    +R       E+  +    +  +I 
Sbjct: 16  TSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARR-------EVELHWRASQCPHIV 68

Query: 467 ELVGFC----SEQGHNILIYDYYRNGSLHEFLH 495
            +V       + +   +++ +    G L   + 
Sbjct: 69  RIVDVYENLYAGRKCLLIVMECLDGGELFSRIQ 101

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 3e-10
 Identities = 17/99 (17%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
            +     +G+GT G V++A++   G+ +A+KK+   + +     +    ++ +  ++H N
Sbjct: 11  KYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHEN 70

Query: 465 IAELVGFCSEQ--------GHNILIYDYYRNGSLHEFLH 495
           +  L+  C  +        G   L++D+  +       +
Sbjct: 71  VVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSN 109

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (139), Expect = 6e-10
 Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 1/91 (1%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
            +     +GEGT G V++AK     +++A+K++           S    +  +  ++H N
Sbjct: 3   KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKN 62

Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           I  L           L++++        F  
Sbjct: 63  IVRLHDVLHSDKKLTLVFEFCDQDLKKYFDS 93

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (139), Expect = 6e-10
 Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 7/92 (7%)

Query: 410 GRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI------RH 462
           G LLG G  G VY      D   +A+K ++               V     +        
Sbjct: 9   GPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGF 68

Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
           + +  L+ +       +LI +           
Sbjct: 69  SGVIRLLDWFERPDSFVLILERPEPVQDLFDF 100

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 7e-10
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 411 RLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV 469
           + +G G  G V  A     G  +A+KK+         ++     ++ +  +RH N+  L+
Sbjct: 24  QPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLL 83

Query: 470 GFCSEQGHNILIYDYY 485
              +         D+Y
Sbjct: 84  DVFTPDETLDDFTDFY 99

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 8e-10
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 2/92 (2%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANS-ESFSEIVQNISRIRHT 463
           +F   +LLG+GT G+V   +    G+  A+K +        +         + +   RH 
Sbjct: 6   DFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHP 65

Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
            +  L            + +Y   G L   L 
Sbjct: 66  FLTALKYAFQTHDRLCFVMEYANGGELFFHLS 97

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 57.5 bits (138), Expect = 9e-10
 Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 7/93 (7%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
           ++   R LG G    V+ A    + + + VK +     ++   E   +I++N+      N
Sbjct: 36  DYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKRE--IKILENLR--GGPN 91

Query: 465 IAELVGFCSEQGHN--ILIYDYYRNGSLHEFLH 495
           I  L     +       L++++  N    +   
Sbjct: 92  IITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ 124

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.5 bits (138), Expect = 1e-09
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 410 GRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAEL 468
           GR +G G+ G +Y       G+ +A+K        +          +    ++       
Sbjct: 12  GRKIGSGSFGDIYLGTDIAAGEEVAIKLECV----KTKHPQLHIESKIYKMMQGGVGIPT 67

Query: 469 VGFCSEQGHNILIYDYYRNGSLHEFLH 495
           + +C  +G   ++       SL +  +
Sbjct: 68  IRWCGAEGDYNVMVMELLGPSLEDLFN 94

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 56.7 bits (136), Expect = 2e-09
 Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRH-T 463
           ++  GR +GEG+ G ++      + + +A+K       +R+++    +  +    +   T
Sbjct: 6   HYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEP----RRSDAPQLRDEYRTYKLLAGCT 61

Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLH 491
            I  +  F  E  HN+L+ D        
Sbjct: 62  GIPNVYYFGQEGLHNVLVIDLLGPSLED 89

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (136), Expect = 2e-09
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 406 NFATGRLLGEGTIGRVYRAKY----PDGKVLAVKKIDSSHFQRANS--ESFSEIVQNISR 459
           NF   ++LG G  G+V+  +       GK+ A+K +  +   +     E      Q +  
Sbjct: 25  NFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEH 84

Query: 460 IRHT-NIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
           IR +  +  L      +    LI DY   G L   L 
Sbjct: 85  IRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLS 121

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 3e-09
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
            +     +G G  G V  A     G  +AVKK+        +++     ++ +  ++H N
Sbjct: 19  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHEN 78

Query: 465 IAELVGFCSEQGHNILIYDYY 485
           +  L+   +         D Y
Sbjct: 79  VIGLLDVFTPARSLEEFNDVY 99

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 3e-09
 Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 3/163 (1%)

Query: 72  TEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIP--YQLPPNLKHLDLSENQFSG 129
             + L   GL          L ++ YL + +N L+      ++   NL HL L  N+ S 
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167

Query: 130 TVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSL 189
               +   +  L  L L  N++       F+   +L TL L  N L+     + A L +L
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227

Query: 190 KKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVPEELKD 231
           + L L +N +            L +    +++    +P+ L  
Sbjct: 228 QYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAG 270

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 4e-07
 Identities = 31/207 (14%), Positives = 56/207 (27%), Gaps = 34/207 (16%)

Query: 65  TCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSE 124
            C             GL           +    + +  N +   +P       ++L +  
Sbjct: 7   VCYNEPKVTTSCPQQGLQAVPVGIPAASQ---RIFLHGNRIS-HVPAASFRACRNLTILW 62

Query: 125 N----------------------------QFSGTVPYSISQMSELKYLNLGSNQLNGQLS 156
                                        Q     P +   +  L  L+L    L     
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 157 DMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDEL 214
            +F+    L+ L L  N L      +F  L +L  L+L  N+ +         L  LD L
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 215 NVENNKFSGWVPEELKDIAKTGGNSWS 241
            +  N+ +   P   +D+ +       
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLF 209

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 6e-07
 Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 6/144 (4%)

Query: 60  HWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPP--NL 117
                     ++T + L G  ++         L S+  L +  N +    P+       L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 118 KHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTG 177
             L L  N  S     +++ +  L+YL L  N               L+    S +++  
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPC 262

Query: 178 ELPRSFASLSSLKKLYLQNNQFTG 201
            LP     L+      L  N   G
Sbjct: 263 SLP---QRLAGRDLKRLAANDLQG 283

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 56.0 bits (133), Expect = 4e-09
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 97  YLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLS 156
              ++ ++ +      LPP+L+ L++S N+    +P    +   L+ L    N L  ++ 
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVP 320

Query: 157 DMFQKNEKLETLDLSKNQLTGELPRSFASLSSLK 190
           ++ Q    L+ L +  N L  E P    S+  L+
Sbjct: 321 ELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.5 bits (124), Expect = 5e-08
 Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 10/100 (10%)

Query: 119 HLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGE 178
                 N  S  +         L+ LN+ +N+L  +L  +     +LE L  S N L  E
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-E 318

Query: 179 LPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVEN 218
           +P       +LK+L+++ N      ++   +   +L + +
Sbjct: 319 VPE---LPQNLKQLHVEYNPLREFPDIPESVE--DLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.1 bits (123), Expect = 6e-08
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
           N  + ++  +      LE L++S N+L  ELP   A    L++L    N       +   
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHLAEVPELPQN 325

Query: 209 LPLDELNVENNKFSGW--VPEELKDI 232
             L +L+VE N    +  +PE ++D+
Sbjct: 326 --LKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 7/88 (7%)

Query: 55  DPCGEHWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP 114
           +      + +     S+ E+ +S   L  +L      L+    L  S N+L   +P +LP
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVP-ELP 323

Query: 115 PNLKHLDLSENQFSGTVPYSISQMSELK 142
            NLK L +  N      P     + +L+
Sbjct: 324 QNLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 93  KSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLN 152
           +    L+++N  L  S+P +LPP+L+ L  S N  +  +P        LK L + +N L 
Sbjct: 38  RQAHELELNNLGLS-SLP-ELPPHLESLVASCNSLT-ELPELPQS---LKSLLVDNNNLK 91

Query: 153 G 153
            
Sbjct: 92  A 92

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 162 NEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKF 221
           + +   L+L+   L+  LP        L+ L    N  T    +   L    ++  N K 
Sbjct: 37  DRQAHELELNNLGLS-SLP---ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA 92

Query: 222 SGWVPEEL 229
              +P  L
Sbjct: 93  LSDLPPLL 100

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 66  CSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSEN 125
           C      E++L+ LGL+  L     +L+S   L  S N+L   +P +LP +LK L +  N
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELPPHLES---LVASCNSLT-ELP-ELPQSLKSLLVDNN 88

Query: 126 QFSG 129
               
Sbjct: 89  NLKA 92

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 4e-09
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 90  TNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSN 149
           + + S   ++    NL  ++P  LP +   L LSEN        ++   + L  LNL   
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 150 QLNGQLSDMFQKN 162
           +L     D     
Sbjct: 66  ELTKLQVDGTLPV 78

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 37/178 (20%), Positives = 53/178 (29%), Gaps = 24/178 (13%)

Query: 68  GSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQ- 126
               T + LS   L       L     ++ L++    L         P L  LDLS NQ 
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 127 ----------------------FSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEK 164
                                  +     ++  + EL+ L L  N+L      +     K
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 165 LETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKF 221
           LE L L+ N LT         L +L  L LQ N              L    +  N +
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 6e-05
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 134 SISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLY 193
            +S+++    +N     L     D+ +       L LS+N L      +    + L +L 
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 194 LQNNQF 199
           L   + 
Sbjct: 62  LDRAEL 67

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 101 SNNNLKDSIPYQL--PPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLN 152
           +NNNL +     L    NL  L L EN    T+P        L +  L  N   
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.6 bits (133), Expect = 5e-09
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 2/92 (2%)

Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANS-ESFSEIVQNISRIRHT 463
            F   + LG G+ GRV   K+   G   A+K +D     +    E      + +  +   
Sbjct: 42  QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101

Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
            + +L     +  +  ++ +Y   G +   L 
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR 133

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 53.2 bits (127), Expect = 8e-09
 Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 13/94 (13%)

Query: 410 GRLLGEGTIGRVYRAKYPDGKVLAVKKIDSS--------HFQRANSESFSEIVQNISRIR 461
           G+L+GEG    V+           VK               +      FS +    +R  
Sbjct: 5   GKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNE 64

Query: 462 HTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
              + +L G    +     +Y +  N  L E + 
Sbjct: 65  FRALQKLQGLAVPK-----VYAWEGNAVLMELID 93

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 2e-08
 Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 406 NFATGRLLGEGTIGRVYRAKY--PDGKVLAVKKIDSSHFQRANSESFS---EIVQNISRI 460
            +     +GEG  G+V++A+     G+ +A+K++     +     S      +++++   
Sbjct: 8   QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETF 67

Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLH 491
            H N+  L   C+    +           + 
Sbjct: 68  EHPNVVRLFDVCTVSRTDRETKLTLVFEHVD 98

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 2e-08
 Identities = 19/122 (15%), Positives = 48/122 (39%), Gaps = 15/122 (12%)

Query: 380 NQFNNVKSTNAQAAPFSMADLLTATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKID 438
           NQF +V+  ++    F++         +   + +G G  G V  A      + +A+KK+ 
Sbjct: 1   NQFYSVEVGDST---FTVLK------RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLS 51

Query: 439 SSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGH-----NILIYDYYRNGSLHEF 493
                + +++     +  +  + H NI  L+   + Q       ++ +     + +L + 
Sbjct: 52  RPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQV 111

Query: 494 LH 495
           + 
Sbjct: 112 IQ 113

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 3e-07
 Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 25/129 (19%)

Query: 72  TEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQL-PPNLKHLDLSENQFSGT 130
             + L+G  L+  +  +L +   V       + +   +     P  ++H+DLS +     
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV- 60

Query: 131 VPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLK 190
                                   L  +  +  KL+ L L   +L+  +  + A  S+L 
Sbjct: 61  ----------------------STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 98

Query: 191 KLYLQNNQF 199
           +L L     
Sbjct: 99  RLNLSGCSG 107

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.3 bits (113), Expect = 3e-07
 Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 27/165 (16%)

Query: 94  SVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQ---------------- 137
             + +D +   LK  IP  +P +   L L++N+        +                  
Sbjct: 9   EGTTVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 138 ---------MSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSS 188
                     S ++ L LG N++    + MF    +L+TL+L  NQ++  +P SF  L+S
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 189 LKKLYLQNNQFTGSINVLGKLPLD-ELNVENNKFSGWVPEELKDI 232
           L  L L +N F  + ++        + ++         P +++D+
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDV 172

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 6e-07
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 88  QLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLG 147
            L NL  ++ L   +N + D  P    PNL  + L  NQ S   P  ++  S L  + L 
Sbjct: 168 PLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL- 224

Query: 148 SNQ 150
           +NQ
Sbjct: 225 TNQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 9e-05
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 157 DMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELN 215
                  KL TL    N+++   P   ASL +L +++L+NNQ +     L     L  + 
Sbjct: 167 TPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVT 223

Query: 216 VEN 218
           + N
Sbjct: 224 LTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 116 NLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQ 174
            L  L   +N+ S   P  ++ +  L  ++L +NQ++            L  + L+ NQ
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 8e-04
 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 163 EKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKF 221
                +   K+ +T  +  + A L  +  L       T +I  +  L  L  L +++N+ 
Sbjct: 19  ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQI 75

Query: 222 SGW 224
           +  
Sbjct: 76  TDL 78

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.9 bits (115), Expect = 7e-07
 Identities = 12/77 (15%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 410 GRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAEL 468
            R LG G    V+ AK   +   +A+K +      +  +E+  + ++ + R+   +  + 
Sbjct: 18  VRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD---KVYTEAAEDEIKLLQRVNDADNTKE 74

Query: 469 VGFCSEQGHNILIYDYY 485
               +     +L +  +
Sbjct: 75  DSMGANHILKLLDHFNH 91

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 159 FQKNEKLETLDLSKNQLTGELPRSFAS-----LSSLKKLYLQNNQFTGSINVLGKL 209
             +N  L+TL L  N++  +  R+  +     +  L  L L  N+F+   +V+ ++
Sbjct: 269 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEI 324

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 133 YSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGE----LPRSFASLSS 188
           +SI   S LK   + +      +  +  +++ ++ + LS N +  E    L  + AS   
Sbjct: 3   FSIEGKS-LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 60

Query: 189 LKKLYLQNNQF 199
           L+     +   
Sbjct: 61  LEIAEFSDIFT 71

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 13/75 (17%)

Query: 91  NLKSVSYLDVSNNNLKDSIPYQLP-------PNLKHLDLSENQFSGTVPYSISQMSELKY 143
               +  L +  N ++      L        P+L  L+L+ N+FS      + ++ E+  
Sbjct: 271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE-DDVVDEIREVF- 328

Query: 144 LNLGSNQLNGQLSDM 158
               S +  G+L ++
Sbjct: 329 ----STRGRGELDEL 339

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 19/92 (20%)

Query: 102 NNNLKDSIPYQLP--------PNLKHLDLSENQFSGTVPYSI-----SQMSELKYLNLGS 148
           +  L       +           L+ L L  N+       ++      +M +L +L L  
Sbjct: 252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 311

Query: 149 NQLN------GQLSDMFQKNEKLETLDLSKNQ 174
           N+ +       ++ ++F    + E  +L   +
Sbjct: 312 NRFSEEDDVVDEIREVFSTRGRGELDELDDME 343

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 5e-06
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 94  SVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNL 146
           S        + +   IP  LP N   L     +       + S   +L+ + +
Sbjct: 9   SNRVFLCQESKVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 60

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 13/80 (16%), Positives = 28/80 (35%)

Query: 119 HLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGE 178
            L L++N        + +     +     +N L    +D+F        LD+S+ ++   
Sbjct: 157 ILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 216

Query: 179 LPRSFASLSSLKKLYLQNNQ 198
                 +L  L+     N +
Sbjct: 217 PSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 8e-04
 Identities = 5/36 (13%), Positives = 14/36 (38%)

Query: 115 PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQ 150
                LD+S  +      Y +  + +L+  +  + +
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 9e-06
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 3/122 (2%)

Query: 84  QLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKY 143
           QL   ++     S   +    L+             L+   +  + T+      + EL  
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLS 69

Query: 144 LNLGSNQLNGQ--LSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG 201
           LNL +N+L     +S + QK   L+ L+LS N+L  E          L++L+L  N  + 
Sbjct: 70  LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD 129

Query: 202 SI 203
           + 
Sbjct: 130 TF 131

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 10/114 (8%)

Query: 89  LTNLKSVSYLDVSNNNLKD-SIPYQLPPNLKHLDLSENQFSGT--VPYSISQMSELKYLN 145
           L        L+  ++      I  +  P L  L+LS N+      +   + +   LK LN
Sbjct: 38  LVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN 97

Query: 146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRS-------FASLSSLKKL 192
           L  N+L  +      K  KLE L L  N L+                   L +L
Sbjct: 98  LSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRL 151

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 27/170 (15%), Positives = 50/170 (29%), Gaps = 42/170 (24%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYS-------------- 134
              L S+  +  +N+++K     Q  PN+  L L+ N+ +   P +              
Sbjct: 42  QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENK 101

Query: 135 -------------------------ISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLD 169
                                    I+ +  L  L       N                 
Sbjct: 102 VKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTL 161

Query: 170 LSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVEN 218
             ++    ++    A L+ L+ LYL  N  +  +  L  L  LD L + +
Sbjct: 162 SLEDNQISDIV-PLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 8e-04
 Identities = 6/65 (9%), Positives = 20/65 (30%), Gaps = 2/65 (3%)

Query: 90  TNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSN 149
                    ++   ++ D++      ++  +  + +         I  +  +  L L  N
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGN 78

Query: 150 QLNGQ 154
           +L   
Sbjct: 79  KLTDI 83

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 10/78 (12%)

Query: 130 TVPYSISQ------MSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSF 183
           TVP  I Q       +E    NL    +   ++    +   ++ +  + + +     +  
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKS--VQGI 64

Query: 184 ASLSSLKKLYLQNNQFTG 201
             L ++ KL+L  N+ T 
Sbjct: 65  QYLPNVTKLFLNGNKLTD 82

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 163 EKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKF 221
            +    +L K  +T  + ++   L+S+ ++   N+    S+  +  LP + +L +  NK 
Sbjct: 24  AETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNKL 80

Query: 222 SGW 224
           +  
Sbjct: 81  TDI 83

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 1/73 (1%)

Query: 154 QLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDE 213
           + +  +    +   LDL   ++   +    A+L     +   +N+            L  
Sbjct: 9   EQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKT 67

Query: 214 LNVENNKFSGWVP 226
           L V NN+      
Sbjct: 68  LLVNNNRICRIGE 80

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 3/100 (3%)

Query: 101 SNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQ 160
           +   ++ +  Y      + LDL   +    +    + + +   ++   N++     D F 
Sbjct: 4   TAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFP 60

Query: 161 KNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT 200
              +L+TL ++ N++         +L  L +L L NN   
Sbjct: 61  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 100

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 11/136 (8%)

Query: 88  QLTNLKSVSYLDVSNNNLK--DSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLN 145
           Q TN      LD+    +   +++   L      +D S+N+      +    +  LK L 
Sbjct: 13  QYTNAVRDRELDLRGYKIPVIENLGATL-DQFDAIDFSDNEIRKLDGF--PLLRRLKTLL 69

Query: 146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTG-ELPRSFASLSSLKKLYLQNNQFTGSIN 204
           + +N++      + Q    L  L L+ N L         ASL SL  L +  N  T   +
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129

Query: 205 ----VLGKLP-LDELN 215
               V+ K+P +  L+
Sbjct: 130 YRLYVIYKVPQVRVLD 145

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 6/139 (4%)

Query: 66  CSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHL---DL 122
           C     + ++ +  G      + L   ++++ L + N      +  +    L  L    +
Sbjct: 5   CCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63

Query: 123 SENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLT-GELPR 181
            ++      P +      L  LNL  N     LS    +   L+ L LS N L      R
Sbjct: 64  VKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPLHCSCALR 122

Query: 182 SFASLSSLKKLYLQNNQFT 200
                       +   +  
Sbjct: 123 WLQRWEEEGLGGVPEQKLQ 141

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 40/165 (24%)

Query: 89  LTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYS-------------- 134
            T+L  V+ L      +K     +   NL  ++ S NQ +   P                
Sbjct: 36  QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 95

Query: 135 ----ISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGEL----------- 179
                   +      L          D  +    L  L+LS N ++              
Sbjct: 96  IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 155

Query: 180 ---------PRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDEL 214
                     +  A+L++L++L + +N+ +  I+VL KL  L+ L
Sbjct: 156 NFSSNQVTDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLESL 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	495
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.82
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.82
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.73
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.71
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.69
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.62
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.6
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.59
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.58
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.58
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.57
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.55
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.55
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.55
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.55
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.55
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.54
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.54
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.54
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.54
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.53
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.53
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.53
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.53
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.53
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.53
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.52
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.52
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.51
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.5
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.5
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.5
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.49
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.47
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.46
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.46
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.44
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.44
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.43
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.43
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.43
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.43
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.42
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.41
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.41
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.4
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.39
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.37
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.37
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.37
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.35
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.35
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.35
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.34
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.33
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.28
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.26
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.26
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.26
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.26
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.24
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.23
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.23
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.17
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.16
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.14
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.14
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.12
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.11
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.03
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.01
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	98.93
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.85
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.84
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.83
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.67
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.66
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	98.5
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	98.38
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.36
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.23
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.88
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.77
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.08
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.02
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	90.67
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	88.39

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3e-33  Score=273.01  Aligned_cols=217  Identities=28%  Similarity=0.493  Sum_probs=168.9

Q ss_pred             CCChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccEEecCC----CEeEEEcCCCCCcc--ccccccCCCCCCcE
Q 040888           24 KTDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGS----SVTEIKLSGLGLNG--QLGYQLTNLKSVSY   97 (495)
Q Consensus        24 ~~~~~~~~~L~~~~~~~~~~~~l~~w~~~~~~~C~~~w~gv~c~~~----~v~~l~L~~n~l~g--~~~~~~~~l~~L~~   97 (495)
                      .|.++|++||++||+++.++..+++|.. ++|||.+.|.||+|+..    +|+.|+|++++++|  .+|+++++|++|++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~~l~sW~~-~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~   80 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPTTLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCT-TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCCHHHHHHHHHHHHHCCCCCcCCCCCC-CCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccc
Confidence            5889999999999999998888999975 67999777999999852    79999999999998  57899999999999


Q ss_pred             EECcC-CCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCc
Q 040888           98 LDVSN-NNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQ  174 (495)
Q Consensus        98 L~Ls~-N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~  174 (495)
                      |||++ |++.|.+|..+.  ++|++|+|++|+|.+..|..+..+.+|+.+++++|.+.+.+|..+.+++.|+.+++++|.
T Consensus        81 L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_          81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccc
Confidence            99996 899999998887  899999999998888777777777777777777777777777777777777777777777


Q ss_pred             CCCcCcccccCCCC------------------------------------------------CCEEeccCCccccccccc
Q 040888          175 LTGELPRSFASLSS------------------------------------------------LKKLYLQNNQFTGSINVL  206 (495)
Q Consensus       175 l~g~~p~~~~~l~~------------------------------------------------L~~L~l~~N~l~g~~~~~  206 (495)
                      ++|.+|..+..+.+                                                |+.+++++|.+++.++.+
T Consensus       161 l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~  240 (313)
T d1ogqa_         161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV  240 (313)
T ss_dssp             CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            77666655544443                                                333344444444433333


Q ss_pred             CCcc-CcEEEeecCCCcccCchhhhhcc-----cCCCCcCC
Q 040888          207 GKLP-LDELNVENNKFSGWVPEELKDIA-----KTGGNSWS  241 (495)
Q Consensus       207 ~~~~-L~~l~l~~N~l~g~~p~~l~~l~-----~~~~n~~~  241 (495)
                      +.++ ++.|++++|+|+|.+|+++.+++     .+.+|.+.
T Consensus       241 ~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             ccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence            3344 77888888888888888887766     34555554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.1e-20  Score=178.73  Aligned_cols=172  Identities=25%  Similarity=0.267  Sum_probs=149.7

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      ..++.|+|++|.+++..+..|.++++|++|+|++|+|+..-+....++|++|+|++|++++ ++..+..+++|++|++++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~  109 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSF  109 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCS
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            3689999999999988888899999999999999999843333344899999999999985 577889999999999999


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcccCc
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVP  226 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~~p  226 (495)
                      |.+.+..+..+..+.+++.|++++|.+++..+..+..+++|+.|++++|++++.+ ..+..++ |+.|+|++|+|+ .+|
T Consensus       110 ~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp  188 (266)
T d1p9ag_         110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP  188 (266)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred             cccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccC
Confidence            9999988889999999999999999999888888899999999999999999887 5677777 999999999999 788


Q ss_pred             hhhhhcc-----cCCCCcCCC
Q 040888          227 EELKDIA-----KTGGNSWSS  242 (495)
Q Consensus       227 ~~l~~l~-----~~~~n~~~~  242 (495)
                      ..+..+.     .+.+|+|.|
T Consensus       189 ~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         189 KGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTTTTTCCCSEEECCSCCBCC
T ss_pred             hhHCCCCCCCEEEecCCCCCC
Confidence            8776554     456666654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.82  E-value=2e-21  Score=188.44  Aligned_cols=175  Identities=27%  Similarity=0.425  Sum_probs=136.3

Q ss_pred             CCEeEEEcCC-CCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEE
Q 040888           69 SSVTEIKLSG-LGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLN  145 (495)
Q Consensus        69 ~~v~~l~L~~-n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  145 (495)
                      +.++.|+|++ |+++|.+|..|++|++|++|||++|++.+..|..+.  ..|++++++.|++.+.+|..+.++++|+.++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~  155 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceee
Confidence            5799999997 899999999999999999999999999987775544  6778888888888777787788888877777


Q ss_pred             cccCcCCCccchhhhCCC------------------------------------------------CCcEEEccCCcCCC
Q 040888          146 LGSNQLNGQLSDMFQKNE------------------------------------------------KLETLDLSKNQLTG  177 (495)
Q Consensus       146 L~~N~l~g~~p~~~~~l~------------------------------------------------~L~~L~ls~N~l~g  177 (495)
                      +++|.++|.+|..+..+.                                                +|+.+++++|.+++
T Consensus       156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~  235 (313)
T d1ogqa_         156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            777777766666555443                                                34455555555554


Q ss_pred             cCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcccCchh--hhhcc--cCCCCcCCCCC
Q 040888          178 ELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVPEE--LKDIA--KTGGNSWSSSP  244 (495)
Q Consensus       178 ~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~~p~~--l~~l~--~~~~n~~~~~~  244 (495)
                      .+| .+..+++|+.|+|++|+|+|.+ ..++.++ |+.|+|++|+|+|.+|+.  +.++.  .+.+|.+.|+.
T Consensus       236 ~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             BGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEEST
T ss_pred             ccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCC
Confidence            433 4677899999999999999987 6788888 999999999999999963  33443  45677755543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.82  E-value=2.2e-20  Score=167.75  Aligned_cols=175  Identities=25%  Similarity=0.382  Sum_probs=137.3

Q ss_pred             CCCCCCcccEEecCCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCC-C--CCCcEEECcCCcCCCCc
Q 040888           55 DPCGEHWKGITCSGSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQL-P--PNLKHLDLSENQFSGTV  131 (495)
Q Consensus        55 ~~C~~~w~gv~c~~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~-~--~~L~~L~Ls~N~l~g~~  131 (495)
                      ..|.|.|..|.|          ++++|+ .+|..+.  +++++|+|++|+|++.++... .  ++|+.|+|++|++.+..
T Consensus         4 ~~C~C~~~~v~C----------s~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~   70 (192)
T d1w8aa_           4 AMCHCEGTTVDC----------TGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE   70 (192)
T ss_dssp             TTSEEETTEEEC----------TTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC
T ss_pred             CCCEEcCCEEEE----------eCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccc
Confidence            346555665555          455665 4566553  689999999999987665544 2  89999999999999999


Q ss_pred             chhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-
Q 040888          132 PYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-  210 (495)
Q Consensus       132 p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-  210 (495)
                      +..+..+++|++|+|++|+|+...|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+........... 
T Consensus        71 ~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~  150 (192)
T d1w8aa_          71 PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEW  150 (192)
T ss_dssp             TTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred             ccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhh
Confidence            9999999999999999999998888899999999999999999998888899999999999999999986542211111 


Q ss_pred             CcEEEeecCCCcccCchhhhhcc--cCCCCcCCC
Q 040888          211 LDELNVENNKFSGWVPEELKDIA--KTGGNSWSS  242 (495)
Q Consensus       211 L~~l~l~~N~l~g~~p~~l~~l~--~~~~n~~~~  242 (495)
                      ++.+.+..|.++...|..+.++.  ++..+.+.|
T Consensus       151 l~~~~l~~~~~~c~~p~~l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         151 LRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             HHHHCCSGGGCBBCSSTTTTTSBGGGSCTTTCCC
T ss_pred             hhhhcccCCCeEeCCChhhcCCEeeecCHhhCcC
Confidence            55566777888888888777654  555555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.5e-19  Score=168.08  Aligned_cols=171  Identities=22%  Similarity=0.263  Sum_probs=97.8

Q ss_pred             cccEEecC-----------CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--C------------
Q 040888           61 WKGITCSG-----------SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--P------------  115 (495)
Q Consensus        61 w~gv~c~~-----------~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~------------  115 (495)
                      |.-|.|+.           ..++.|+|++|+|+...+..|.++++|++||+++|.+.+..+..+.  +            
T Consensus        13 ~~~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          13 KVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             SCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             CeEEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            44577764           2578999999999977777899999999999999998754433322  3            


Q ss_pred             -------------CCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCccc
Q 040888          116 -------------NLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRS  182 (495)
Q Consensus       116 -------------~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~  182 (495)
                                   +|++|+|++|.+....+..+..+.+|+.+++++|+|++..+..|..+++|+.|++++|++++..+..
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence                         4444555555444444444444444555555555554444444444445555555555554444444


Q ss_pred             ccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcccCchhhhh
Q 040888          183 FASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVPEELKD  231 (495)
Q Consensus       183 ~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~~p~~l~~  231 (495)
                      |.++++|+.+++++|++++.. ..+..++ |+.|++++|.+++..|..|.+
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~  223 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP  223 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred             hccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccccc
Confidence            444555555555555554433 3334433 455555555555444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=1.1e-17  Score=149.76  Aligned_cols=131  Identities=26%  Similarity=0.382  Sum_probs=119.6

Q ss_pred             CcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCc-chhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCC
Q 040888           95 VSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTV-PYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKN  173 (495)
Q Consensus        95 L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N  173 (495)
                      .+.+|.++|+|+ .+|..+++++++|+|++|+|++.+ +..|.++++|+.|+|++|++.+..+..|..+++|++|+|++|
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CCEEEEeCCCcC-ccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            468999999999 799999999999999999998755 567799999999999999999999999999999999999999


Q ss_pred             cCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcccCc
Q 040888          174 QLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVP  226 (495)
Q Consensus       174 ~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~~p  226 (495)
                      +|++..|..|.++++|++|+|++|+|++.. ..+..++ |++++|++|.+.+..+
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc
Confidence            999888889999999999999999999877 5677777 9999999999987544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=3.3e-17  Score=157.61  Aligned_cols=175  Identities=26%  Similarity=0.357  Sum_probs=112.1

Q ss_pred             CCCCCCCcccEEecC-----------CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEE
Q 040888           54 GDPCGEHWKGITCSG-----------SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHL  120 (495)
Q Consensus        54 ~~~C~~~w~gv~c~~-----------~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L  120 (495)
                      +-.|.|.|.+|.|++           ..++.|+|++|+++...+..|.++++|++|++++|.+....|..+.  ++|++|
T Consensus         5 p~~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L   84 (305)
T d1xkua_           5 PFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL   84 (305)
T ss_dssp             CTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCCCEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEe
Confidence            445777999999975           3578899999999877777899999999999999999876676665  788888


Q ss_pred             ECcCCcCCCCcch------------------------------------------------hccCCCCCcEEEcccCcCC
Q 040888          121 DLSENQFSGTVPY------------------------------------------------SISQMSELKYLNLGSNQLN  152 (495)
Q Consensus       121 ~Ls~N~l~g~~p~------------------------------------------------~~~~l~~L~~L~L~~N~l~  152 (495)
                      +|++|+++. +|.                                                .+..+++|+++++++|.++
T Consensus        85 ~l~~n~l~~-l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          85 YLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             ECCSSCCSB-CCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             cccCCccCc-CccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            888877652 221                                                1223345555555555554


Q ss_pred             CccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcccCchhhh
Q 040888          153 GQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVPEELK  230 (495)
Q Consensus       153 g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~~p~~l~  230 (495)
                      . +|..  .+++|+.|++++|..++..+..|.+++.++.|++++|.+++.. ..+..++ |++|+|++|.|+ .+|..+.
T Consensus       164 ~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~  239 (305)
T d1xkua_         164 T-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA  239 (305)
T ss_dssp             S-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred             c-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccc
Confidence            2 2222  1345555566666655555556666666666666666665544 3334444 666666666655 3455554


Q ss_pred             hcc
Q 040888          231 DIA  233 (495)
Q Consensus       231 ~l~  233 (495)
                      +++
T Consensus       240 ~l~  242 (305)
T d1xkua_         240 DHK  242 (305)
T ss_dssp             TCS
T ss_pred             ccc
Confidence            443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=7e-17  Score=152.27  Aligned_cols=153  Identities=25%  Similarity=0.257  Sum_probs=135.3

Q ss_pred             CCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEE
Q 040888           68 GSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLN  145 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  145 (495)
                      ..+++.|+|++|.|+. ++ .++.+++|++|+|++|++++. |..+.  ++|+.|+|++|.+.+..+..+..+.+++.|+
T Consensus        54 l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~  130 (266)
T d1p9ag_          54 YTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY  130 (266)
T ss_dssp             CTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred             cccccccccccccccc-cc-ccccccccccccccccccccc-ccccccccccccccccccccceeecccccccccccccc
Confidence            3689999999999985 33 468899999999999999864 43343  8999999999999988888899999999999


Q ss_pred             cccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcc
Q 040888          146 LGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSG  223 (495)
Q Consensus       146 L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g  223 (495)
                      +++|.++...+..+..+++|+.|++++|+|++..+..|..+++|++|+|++|+|+..+..+..++ |+.|+|++|++..
T Consensus       131 l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCC
Confidence            99999998888889999999999999999998888889999999999999999996555555555 9999999999875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1e-16  Score=152.50  Aligned_cols=149  Identities=21%  Similarity=0.256  Sum_probs=131.4

Q ss_pred             CCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCcc
Q 040888           78 GLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQL  155 (495)
Q Consensus        78 ~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~  155 (495)
                      .+.++...+..|.++++|++|+|++|.+.+..+..+.  ++|+.+++++|+|++..+..|..+++|+.|+|++|+|++..
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence            3344445567899999999999999999865554444  88999999999999877888999999999999999999998


Q ss_pred             chhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-cccCCcc-CcEEEeecCCCcccCc
Q 040888          156 SDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKLP-LDELNVENNKFSGWVP  226 (495)
Q Consensus       156 p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~-L~~l~l~~N~l~g~~p  226 (495)
                      +..|.++++|+.+++++|++++..|..|..+++|++|++++|++++.+ ..+..++ |+.|++++|++.+.-+
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            999999999999999999999999999999999999999999999887 5677776 9999999999987544

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2e-16  Score=148.81  Aligned_cols=87  Identities=23%  Similarity=0.489  Sum_probs=78.4

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      ++|...+.||+|+||.||+|.+.+++.||||+++....   ..++|.+|++++++++|||||+++|+|..++..++||||
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~---~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~   81 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM---SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEF   81 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSS---CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcC---cHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEe
Confidence            35677889999999999999998888999999976432   357899999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      |++|+|.+++
T Consensus        82 ~~~g~L~~~l   91 (263)
T d1sm2a_          82 MEHGCLSDYL   91 (263)
T ss_dssp             CTTCBHHHHH
T ss_pred             cCCCcHHHHh
Confidence            9999999876

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.6e-16  Score=146.42  Aligned_cols=87  Identities=25%  Similarity=0.465  Sum_probs=79.0

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      ++|...+.||+|+||+||+|++++++.||||+++....   ..++|.+|++++++++|||||+++|+|.+++..++||||
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~---~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey   80 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM---SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEY   80 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSS---CHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEEC
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcC---CHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEc
Confidence            47788899999999999999998888999999986543   257899999999999999999999999999999999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      +++|+|.+++
T Consensus        81 ~~~g~l~~~~   90 (258)
T d1k2pa_          81 MANGCLLNYL   90 (258)
T ss_dssp             CTTEEHHHHH
T ss_pred             cCCCcHHHhh
Confidence            9999998874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=8.1e-15  Score=132.79  Aligned_cols=154  Identities=26%  Similarity=0.368  Sum_probs=119.4

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      ..++.|+++++.+....  .+..+++|++|+|++|++++..|..-.++|++|++++|++++ +| .+..+++|+.|++++
T Consensus        46 ~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTT
T ss_pred             cCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCccccccCccccccccccccccc-cc-ccccccccccccccc
Confidence            46888999999887643  377889999999999999875554444889999999999984 55 588889999999999


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcccCch
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVPE  227 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~~p~  227 (495)
                      |.+.. + ..+..++.|+.+++++|.+++  +..+..+++|+.+++++|++++.. .+..++ |+.|++++|.++. +| 
T Consensus       122 ~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~-~l~~l~~L~~L~Ls~N~i~~-l~-  194 (210)
T d1h6ta2         122 NGISD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISD-LR-  194 (210)
T ss_dssp             SCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCB-CG-
T ss_pred             ccccc-c-ccccccccccccccccccccc--cccccccccccccccccccccccc-cccCCCCCCEEECCCCCCCC-Ch-
Confidence            98864 2 357788889999999999875  335678889999999999988643 466666 8999999998874 44 


Q ss_pred             hhhhcc
Q 040888          228 ELKDIA  233 (495)
Q Consensus       228 ~l~~l~  233 (495)
                      .+..++
T Consensus       195 ~l~~l~  200 (210)
T d1h6ta2         195 ALAGLK  200 (210)
T ss_dssp             GGTTCT
T ss_pred             hhcCCC
Confidence            344443

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=1.9e-16  Score=151.74  Aligned_cols=100  Identities=25%  Similarity=0.461  Sum_probs=81.1

Q ss_pred             cccHHHHHHhccCC---------cccceeccCCceEEEEEEcCC-C---CEEEEEEecCcccccccHHHHHHHHHHHhcC
Q 040888          394 PFSMADLLTATANF---------ATGRLLGEGTIGRVYRAKYPD-G---KVLAVKKIDSSHFQRANSESFSEIVQNISRI  460 (495)
Q Consensus       394 ~~~~~~~~~~t~~f---------~~~~~iG~G~~g~Vy~~~~~~-g---~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l  460 (495)
                      .+|++|+..++.+|         ...+.||+|+||+||+|.+.. +   ..||||++..... ....++|.+|+++|+++
T Consensus         6 ~~t~~d~~~a~~~f~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l   84 (299)
T d1jpaa_           6 PFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYT-EKQRRDFLSEASIMGQF   84 (299)
T ss_dssp             GGGSSSHHHHHHHHSCBCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCC-HHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHhhhchhhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccC-HHHHHHHHHHHHHHHhC
Confidence            45667777666554         345789999999999999742 3   3689999875432 22356899999999999


Q ss_pred             CCCCcceEEEEEEeCCEEEEEEEecCCCCHhhhh
Q 040888          461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       461 ~H~niv~l~g~~~~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      +|||||+++|+|..++..++|||||++|+|.+++
T Consensus        85 ~HpnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~  118 (299)
T d1jpaa_          85 DHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFL  118 (299)
T ss_dssp             CCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHH
T ss_pred             CCCCCccEEEEEeeCCEEEEEEEecCCCcceeee
Confidence            9999999999999999999999999999998865

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=1.1e-14  Score=130.75  Aligned_cols=154  Identities=25%  Similarity=0.415  Sum_probs=126.5

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      .+++.|+++++++...  +.+..+++|++|+|++|++++..|..-.++|++|++++|.+.. ++ .+.++++|+.|++++
T Consensus        40 ~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~  115 (199)
T d2omxa2          40 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFN  115 (199)
T ss_dssp             TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCS
T ss_pred             cCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcccccCCccccccccccccccc-cc-ccccccccccccccc
Confidence            5789999999998853  3478899999999999999976553334899999999999984 44 488999999999999


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcccCch
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVPE  227 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~~p~  227 (495)
                      |.+....  .+..+++|+.|++++|++.. ++ .+..+++|+.|++.+|++++.. .+..++ |+.|++++|++++ +| 
T Consensus       116 ~~~~~~~--~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~-i~-  188 (199)
T d2omxa2         116 NQITDID--PLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSD-IS-  188 (199)
T ss_dssp             SCCCCCG--GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC-CG-
T ss_pred             ccccccc--ccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccCCc-cccCCCCCCEEECCCCCCCC-Cc-
Confidence            9987643  47889999999999999974 44 5889999999999999998754 466666 9999999999986 33 


Q ss_pred             hhhhcc
Q 040888          228 ELKDIA  233 (495)
Q Consensus       228 ~l~~l~  233 (495)
                      .+..++
T Consensus       189 ~l~~L~  194 (199)
T d2omxa2         189 VLAKLT  194 (199)
T ss_dssp             GGGGCT
T ss_pred             cccCCC
Confidence            344443

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.2e-16  Score=148.08  Aligned_cols=89  Identities=22%  Similarity=0.429  Sum_probs=76.9

Q ss_pred             hccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ..++|...+.||+|+||.||+|.+++++.||||+++....   ..++|.+|++++++++|||||+++|+|.+ +..++||
T Consensus        11 ~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~---~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-~~~~iv~   86 (272)
T d1qpca_          11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM---SPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIIT   86 (272)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS---CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEE
T ss_pred             CHHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcC---CHHHHHHHHHHHHhCCCCCEeEEEeeecc-CCeEEEE
Confidence            3456778899999999999999998888999999976432   35689999999999999999999998854 5568999


Q ss_pred             EecCCCCHhhhhC
Q 040888          483 DYYRNGSLHEFLH  495 (495)
Q Consensus       483 ey~~~GsL~~~L~  495 (495)
                      ||+++|+|.++++
T Consensus        87 Ey~~~g~L~~~~~   99 (272)
T d1qpca_          87 EYMENGSLVDFLK   99 (272)
T ss_dssp             ECCTTCBHHHHTT
T ss_pred             EeCCCCcHHHHHh
Confidence            9999999998763

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=2.3e-16  Score=150.27  Aligned_cols=90  Identities=23%  Similarity=0.486  Sum_probs=79.3

Q ss_pred             HhccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEE
Q 040888          402 TATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       402 ~~t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~l  480 (495)
                      ...++|...+.||+|+||+||+|++. +++.||||+++....   ..++|.+|+++|++++|||||+++|+|.+++..++
T Consensus        14 i~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~---~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~i   90 (287)
T d1opja_          14 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM---EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYI   90 (287)
T ss_dssp             CCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCS---CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             ecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccc---hHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEE
Confidence            33456778899999999999999985 588999999976532   35789999999999999999999999999999999


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      |||||++|+|.++|
T Consensus        91 v~E~~~~g~l~~~l  104 (287)
T d1opja_          91 ITEFMTYGNLLDYL  104 (287)
T ss_dssp             EEECCTTCBHHHHH
T ss_pred             EeecccCcchHHHh
Confidence            99999999999876

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=9.6e-16  Score=144.42  Aligned_cols=90  Identities=20%  Similarity=0.401  Sum_probs=76.9

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe--CCEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE--QGHNILI  481 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~--~~~~~lv  481 (495)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++..........+.|.+|++++++++|||||++++++.+  .+..++|
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~iv   83 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV   83 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEE
Confidence            5788889999999999999987 569999999998765444445679999999999999999999999965  4557899


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      |||+++|+|.+++
T Consensus        84 mEy~~~g~L~~~i   96 (269)
T d2java1          84 MEYCEGGDLASVI   96 (269)
T ss_dssp             EECCTTEEHHHHH
T ss_pred             EecCCCCcHHHHH
Confidence            9999999999875

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.8e-16  Score=144.74  Aligned_cols=90  Identities=22%  Similarity=0.319  Sum_probs=76.6

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|+..+.||+|+||+||+|+. .+|+.||||+++..... ...+.|.+|++++++++|||||++++++.+++..++|||
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~-~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmE   83 (271)
T d1nvra_           5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV-DCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   83 (271)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC--------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcc-hHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEe
Confidence            4688889999999999999998 46999999999764332 224578999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhhC
Q 040888          484 YYRNGSLHEFLH  495 (495)
Q Consensus       484 y~~~GsL~~~L~  495 (495)
                      |+++|+|.++|+
T Consensus        84 y~~gg~L~~~l~   95 (271)
T d1nvra_          84 YCSGGELFDRIE   95 (271)
T ss_dssp             CCTTEEGGGGSB
T ss_pred             ccCCCcHHHHHh
Confidence            999999998863

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.7e-15  Score=143.28  Aligned_cols=90  Identities=26%  Similarity=0.390  Sum_probs=78.8

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc----ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR----ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~----~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      +.|...+.||+|+||+||+|.. .+|+.||||++.......    ...+.|.+|+++|++++|||||++++++.+++..+
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   89 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   89 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            4578889999999999999997 569999999997543211    23578999999999999999999999999999999


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +|||||++|+|.++|
T Consensus        90 iv~E~~~gg~L~~~i  104 (293)
T d1jksa_          90 LILELVAGGELFDFL  104 (293)
T ss_dssp             EEEECCCSCBHHHHH
T ss_pred             EEEEcCCCccccchh
Confidence            999999999999876

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.1e-16  Score=145.90  Aligned_cols=88  Identities=23%  Similarity=0.446  Sum_probs=75.5

Q ss_pred             ccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      .++|...+.||+|+||+||+|++++  .||||+++.........+.|.+|++++++++|||||+++|++.+ +..++|||
T Consensus         7 ~~~~~~~~~lG~G~fg~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~~lv~E   83 (276)
T d1uwha_           7 DGQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQLAIVTQ   83 (276)
T ss_dssp             TTCCCCCSEEEECSSCEEEEEESSS--EEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred             cccEEEEEEEeeCCCcEEEEEEECC--EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-cEEEEEEe
Confidence            4578888999999999999998753  59999997654444446789999999999999999999999864 55789999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      ||++|+|.++|
T Consensus        84 y~~~g~L~~~l   94 (276)
T d1uwha_          84 WCEGSSLYHHL   94 (276)
T ss_dssp             CCCEEEHHHHH
T ss_pred             cCCCCCHHHHH
Confidence            99999999987

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6e-15  Score=140.51  Aligned_cols=88  Identities=17%  Similarity=0.320  Sum_probs=78.2

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      +.|...+.||+|+||+||+|.. .+|+.||||++.....  ...+.+.+|++++++++|||||++++++..++..++|||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE   97 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ--PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME   97 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGC--SCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccC--hHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEE
Confidence            4688889999999999999997 5699999999975432  235679999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        98 y~~gg~L~~~~  108 (293)
T d1yhwa1          98 YLAGGSLTDVV  108 (293)
T ss_dssp             CCTTCBHHHHH
T ss_pred             ecCCCcHHHHh
Confidence            99999998864

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.6e-15  Score=140.90  Aligned_cols=90  Identities=29%  Similarity=0.457  Sum_probs=78.9

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||+||+|+.+ +++.||+|++...... ....+.+.+|++++++++|||||++++++.+++..++||
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivm   85 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL   85 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEE
Confidence            46888899999999999999984 6899999999754322 223567999999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        86 Ey~~~g~L~~~l   97 (263)
T d2j4za1          86 EYAPLGTVYREL   97 (263)
T ss_dssp             ECCTTCBHHHHH
T ss_pred             eecCCCcHHHHH
Confidence            999999999876

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2e-15  Score=143.31  Aligned_cols=88  Identities=23%  Similarity=0.462  Sum_probs=76.7

Q ss_pred             ccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      .++|...+.||+|+||.||+|.+++++.||||++.....   ..+.|.+|+.++++++|||||+++|+|. ++..++|||
T Consensus        16 ~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~---~~~~~~~E~~~l~~l~h~nIv~~~g~~~-~~~~~lv~E   91 (285)
T d1fmka3          16 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTE   91 (285)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS---CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEC
T ss_pred             HHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccC---CHHHHHHHHHHHHhcccCCEeEEEEEEe-cCCeEEEEE
Confidence            457888999999999999999998888999999976532   3578999999999999999999999985 456789999


Q ss_pred             ecCCCCHhhhhC
Q 040888          484 YYRNGSLHEFLH  495 (495)
Q Consensus       484 y~~~GsL~~~L~  495 (495)
                      ||++|+|..+++
T Consensus        92 y~~~g~l~~~~~  103 (285)
T d1fmka3          92 YMSKGSLLDFLK  103 (285)
T ss_dssp             CCTTCBHHHHHS
T ss_pred             ecCCCchhhhhh
Confidence            999999988763

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.6e-15  Score=146.77  Aligned_cols=90  Identities=23%  Similarity=0.281  Sum_probs=79.5

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .++|...+.||+|+||+||+|+. .+|+.||+|+++.... ....+.+.+|+++|++++|||||+++++|.+++..++||
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~-~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVm   83 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIK-PAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM   83 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCC-TTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhC-HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            45788889999999999999997 4689999999975432 233568999999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      |||++|+|.+++
T Consensus        84 Ey~~gg~L~~~l   95 (322)
T d1s9ja_          84 EHMDGGSLDQVL   95 (322)
T ss_dssp             ECCTTEEHHHHH
T ss_pred             EcCCCCcHHHHH
Confidence            999999999876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=4.3e-14  Score=127.91  Aligned_cols=142  Identities=30%  Similarity=0.454  Sum_probs=118.7

Q ss_pred             CCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcc
Q 040888           68 GSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLG  147 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~  147 (495)
                      ..+++.|+|++|.+++..  .++++++|+.|++++|++++.-+..-.++|+.|++++|.+.. + ..+..+++|+.++++
T Consensus        67 l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~  142 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLG  142 (210)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECC
T ss_pred             CCCCCEEeCCCccccCcc--ccccCccccccccccccccccccccccccccccccccccccc-c-ccccccccccccccc
Confidence            368999999999999854  378999999999999999863222223899999999999874 3 358899999999999


Q ss_pred             cCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeec
Q 040888          148 SNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVEN  218 (495)
Q Consensus       148 ~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~  218 (495)
                      +|.+++.  ..+..+++|+.+++++|++++. + .+.++++|+.|+|++|+++. ++.+..++ |+.|+|++
T Consensus       143 ~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         143 NNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFS  209 (210)
T ss_dssp             SSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEE
T ss_pred             ccccccc--cccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-ChhhcCCCCCCEEEccC
Confidence            9999863  4577899999999999999864 4 38899999999999999985 45677777 99999975

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.54  E-value=4.7e-14  Score=135.13  Aligned_cols=136  Identities=24%  Similarity=0.397  Sum_probs=116.8

Q ss_pred             cccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCC
Q 040888           85 LGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEK  164 (495)
Q Consensus        85 ~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~  164 (495)
                      .+..+..+++|+.+++++|.+. .+|..+.++|+.|++++|.+++..+..+.+++.+++|++++|.+++..+..+.++++
T Consensus       142 ~~~~~~~l~~L~~l~l~~n~l~-~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~  220 (305)
T d1xkua_         142 ENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH  220 (305)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCC-SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT
T ss_pred             CccccccccccCccccccCCcc-ccCcccCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccccc
Confidence            3456778889999999999987 577777799999999999999999999999999999999999999988999999999


Q ss_pred             CcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccc-ccc------CCcc-CcEEEeecCCCc
Q 040888          165 LETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVL------GKLP-LDELNVENNKFS  222 (495)
Q Consensus       165 L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-~~~------~~~~-L~~l~l~~N~l~  222 (495)
                      |++|+|++|+|+ .+|..|.++++|++|+|++|+|+... ..+      ..+. |+.|++++|++.
T Consensus       221 L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         221 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            999999999998 67889999999999999999998643 222      2222 889999999885

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3e-15  Score=141.60  Aligned_cols=83  Identities=22%  Similarity=0.406  Sum_probs=67.7

Q ss_pred             ceeccCCceEEEEEEcC---CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEecCC
Q 040888          411 RLLGEGTIGRVYRAKYP---DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRN  487 (495)
Q Consensus       411 ~~iG~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~~~  487 (495)
                      +.||+|+||+||+|.+.   .++.||||+++.........++|.+|+++|++++|||||+++|+|.. +..++|||||++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~lvmE~~~~   91 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL   91 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEEEEEEcCCC
Confidence            57999999999999874   35689999997654333335689999999999999999999999965 456899999999


Q ss_pred             CCHhhhh
Q 040888          488 GSLHEFL  494 (495)
Q Consensus       488 GsL~~~L  494 (495)
                      |+|.+++
T Consensus        92 g~L~~~l   98 (277)
T d1xbba_          92 GPLNKYL   98 (277)
T ss_dssp             EEHHHHH
T ss_pred             CcHHHHH
Confidence            9999876

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.8e-15  Score=141.44  Aligned_cols=87  Identities=25%  Similarity=0.466  Sum_probs=71.7

Q ss_pred             CCcccce-eccCCceEEEEEEcC---CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          406 NFATGRL-LGEGTIGRVYRAKYP---DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       406 ~f~~~~~-iG~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      +|...+. ||+|+||.||+|.++   ++..||||+++.... ....++|.+|+++|++++|||||+++|+|.. +..++|
T Consensus         9 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~-~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~~lv   86 (285)
T d1u59a_           9 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTE-KADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLV   86 (285)
T ss_dssp             GEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEE
T ss_pred             CeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcC-HHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeEEEE
Confidence            4444564 999999999999874   355899999976432 2335789999999999999999999999965 457899


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      ||||++|+|.+++
T Consensus        87 mE~~~~g~L~~~l   99 (285)
T d1u59a_          87 MEMAGGGPLHKFL   99 (285)
T ss_dssp             EECCTTEEHHHHH
T ss_pred             EEeCCCCcHHHHh
Confidence            9999999999876

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.6e-15  Score=139.10  Aligned_cols=86  Identities=16%  Similarity=0.324  Sum_probs=73.0

Q ss_pred             ccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEe----CCEEEEEEE
Q 040888          409 TGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSE----QGHNILIYD  483 (495)
Q Consensus       409 ~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~----~~~~~lv~e  483 (495)
                      ..+.||+|+||+||+|... +++.||+|++..........+.|.+|+++|++++|||||++++++..    +...++|||
T Consensus        13 ~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivmE   92 (270)
T d1t4ha_          13 FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTE   92 (270)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEE
T ss_pred             eeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEEe
Confidence            3467999999999999984 68899999997654433345679999999999999999999999975    345789999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+++|+|.+++
T Consensus        93 ~~~~g~L~~~l  103 (270)
T d1t4ha_          93 LMTSGTLKTYL  103 (270)
T ss_dssp             CCCSCBHHHHH
T ss_pred             CCCCCcHHHHH
Confidence            99999999876

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.3e-15  Score=141.27  Aligned_cols=88  Identities=19%  Similarity=0.341  Sum_probs=77.4

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      +.|+..+.||+|+||+||+|.. .+|+.||||++.....  ...+.|.+|+++|++++|||||++++++.+++..++|||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~--~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmE   89 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSE--EELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIE   89 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSS--GGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCH--HHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEe
Confidence            3567788999999999999997 4689999999976432  235678999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      ||++|+|.+++
T Consensus        90 y~~~g~L~~~~  100 (288)
T d2jfla1          90 FCAGGAVDAVM  100 (288)
T ss_dssp             CCTTEEHHHHH
T ss_pred             cCCCCcHHHHH
Confidence            99999998875

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.53  E-value=6.7e-15  Score=143.77  Aligned_cols=89  Identities=24%  Similarity=0.429  Sum_probs=79.3

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .++|...+.||+|+||.||+|+. .+|+.||||++.....  ...+.+.+|+++|++++|||||++++++.+++..++||
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~--~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm  102 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHE--SDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIY  102 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSH--HHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEE
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccch--hhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            45788899999999999999997 4699999999976532  23567899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      |||++|+|.+++
T Consensus       103 E~~~gg~L~~~l  114 (350)
T d1koaa2         103 EFMSGGELFEKV  114 (350)
T ss_dssp             CCCCSCBHHHHH
T ss_pred             EcCCCCCHHHHH
Confidence            999999999876

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=2.1e-15  Score=144.86  Aligned_cols=90  Identities=23%  Similarity=0.362  Sum_probs=74.1

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .+.|...+.||+|+||+||+|... +|+.||||++....... ..+.+.+|+++|++++|||||++++++.+++..++||
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~-~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvm   86 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEG-KEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIM   86 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC-----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhh-HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            345888899999999999999974 68999999997654322 2456889999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      |||++|+|.++|
T Consensus        87 E~~~gg~L~~~l   98 (307)
T d1a06a_          87 QLVSGGELFDRI   98 (307)
T ss_dssp             CCCCSCBHHHHH
T ss_pred             eccCCCcHHHhh
Confidence            999999999886

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.5e-15  Score=141.84  Aligned_cols=90  Identities=21%  Similarity=0.359  Sum_probs=78.7

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||+||+|+. .+|+.||||++...... ....+.+.+|++++++++|||||++++++.+++..++||
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm   87 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL   87 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence            4688899999999999999997 46999999999754321 223567999999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus        88 Ey~~gg~L~~~~   99 (288)
T d1uu3a_          88 SYAKNGELLKYI   99 (288)
T ss_dssp             CCCTTEEHHHHH
T ss_pred             EccCCCCHHHhh
Confidence            999999998875

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8.9e-15  Score=141.32  Aligned_cols=89  Identities=17%  Similarity=0.227  Sum_probs=78.5

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      .++|...+.||+|+||+||+|... +|+.||||.++....   ....+.+|+++|.+++|||||++++++.+++..++||
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~---~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvm   80 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGT---DQVLVKKEISILNIARHRNILHLHESFESMEELVMIF   80 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTH---HHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcc---cHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEE
Confidence            356788899999999999999974 688999999976432   2456889999999999999999999999999999999


Q ss_pred             EecCCCCHhhhhC
Q 040888          483 DYYRNGSLHEFLH  495 (495)
Q Consensus       483 ey~~~GsL~~~L~  495 (495)
                      |||++|+|.++|+
T Consensus        81 E~~~gg~L~~~i~   93 (321)
T d1tkia_          81 EFISGLDIFERIN   93 (321)
T ss_dssp             CCCCCCBHHHHHT
T ss_pred             ecCCCCcHHHHHH
Confidence            9999999999874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=5.5e-14  Score=138.62  Aligned_cols=154  Identities=27%  Similarity=0.443  Sum_probs=107.4

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      .+++.|++++|.++..  +.+..+++|+.|++++|.+++..+....++|+.|++++|.+++..+  +..+..++.+.++.
T Consensus       219 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~  294 (384)
T d2omza2         219 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNE  294 (384)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred             CCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCc--cccccccccccccc
Confidence            3566677777766642  3466677777777777777765554444677777777777765432  56677777777777


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcccCch
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVPE  227 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g~~p~  227 (495)
                      |.+++.  ..+..+.+++.|++++|++++..|  +..+++|+.|++++|++++. +.+..++ |+.|++++|++++..| 
T Consensus       295 n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l-~~l~~l~~L~~L~l~~N~l~~l~~-  368 (384)
T d2omza2         295 NQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV-SSLANLTNINWLSAGHNQISDLTP-  368 (384)
T ss_dssp             SCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCBCGG-
T ss_pred             cccccc--cccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCC-hhHcCCCCCCEEECCCCcCCCChh-
Confidence            777653  346777888888888888886533  77888888888888888764 3456666 8888888888887654 


Q ss_pred             hhhhcc
Q 040888          228 ELKDIA  233 (495)
Q Consensus       228 ~l~~l~  233 (495)
                       +.+++
T Consensus       369 -l~~l~  373 (384)
T d2omza2         369 -LANLT  373 (384)
T ss_dssp             -GTTCT
T ss_pred             -hccCC
Confidence             44443

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.5e-15  Score=140.89  Aligned_cols=86  Identities=27%  Similarity=0.535  Sum_probs=72.9

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC-CEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ-GHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~-~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||+|.+ .|+.||||+++...    ..++|.+|++++++++|||||+++|+|.+. +..++|||
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~~~----~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~e   81 (262)
T d1byga_           7 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE   81 (262)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC------HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEEC
T ss_pred             HHeEEeEEEecCCCeEEEEEEE-CCeEEEEEEECcHH----HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEe
Confidence            4566778999999999999998 47789999997542    256899999999999999999999999654 55789999


Q ss_pred             ecCCCCHhhhhC
Q 040888          484 YYRNGSLHEFLH  495 (495)
Q Consensus       484 y~~~GsL~~~L~  495 (495)
                      |+++|+|.++|+
T Consensus        82 y~~~g~L~~~l~   93 (262)
T d1byga_          82 YMAKGSLVDYLR   93 (262)
T ss_dssp             CCTTEEHHHHHH
T ss_pred             ccCCCCHHHHHH
Confidence            999999999873

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=1e-13  Score=126.94  Aligned_cols=149  Identities=24%  Similarity=0.380  Sum_probs=92.7

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      .+++.|++.+|+++. + +.+..+++|++|+|++|.+++..|..-.++|+++++++|.++ .++ .+..+++|+.|++++
T Consensus        41 ~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          41 DGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTS  116 (227)
T ss_dssp             HTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTT
T ss_pred             CCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccccccccccccccccccccc-ccc-ccccccccccccccc
Confidence            356666777766664 2 246666777777777776665544333466666666666665 233 355666666666666


Q ss_pred             CcCCCccc--------------------hhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCC
Q 040888          149 NQLNGQLS--------------------DMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGK  208 (495)
Q Consensus       149 N~l~g~~p--------------------~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~  208 (495)
                      |...+..+                    ..+..+++|+.|++++|.+++..  .+.++++|+.|+|++|++++. +.+..
T Consensus       117 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~~l~~  193 (227)
T d1h6ua2         117 TQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-SPLAS  193 (227)
T ss_dssp             SCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-GGGGG
T ss_pred             ccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccch--hhcccccceecccCCCccCCC-hhhcC
Confidence            65543211                    22455667777777777776432  367777778888877777653 33455


Q ss_pred             cc-CcEEEeecCCCccc
Q 040888          209 LP-LDELNVENNKFSGW  224 (495)
Q Consensus       209 ~~-L~~l~l~~N~l~g~  224 (495)
                      ++ |+.|++++|++++.
T Consensus       194 l~~L~~L~Ls~N~lt~i  210 (227)
T d1h6ua2         194 LPNLIEVHLKNNQISDV  210 (227)
T ss_dssp             CTTCCEEECTTSCCCBC
T ss_pred             CCCCCEEECcCCcCCCC
Confidence            55 77788877777753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=1.1e-13  Score=124.00  Aligned_cols=138  Identities=29%  Similarity=0.409  Sum_probs=113.6

Q ss_pred             CCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcc
Q 040888           68 GSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLG  147 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~  147 (495)
                      ..+++.|+|++|.+++..|  ++++++|++|++++|.+....+..-.++|+.|++++|.+...  ..+..+++|+.|+++
T Consensus        61 l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~  136 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELS  136 (199)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECC
T ss_pred             CCCcCcCccccccccCccc--ccCCcccccccccccccccccccccccccccccccccccccc--cccchhhhhHHhhhh
Confidence            4789999999999998654  999999999999999988544333348999999999999864  347889999999999


Q ss_pred             cCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEE
Q 040888          148 SNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDEL  214 (495)
Q Consensus       148 ~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l  214 (495)
                      +|++.. ++ .+..+++|+.|++++|++++. + .+.++++|+.|++++|++++. +.+..++ |+.|
T Consensus       137 ~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~i-~~l~~L~~L~~L  199 (199)
T d2omxa2         137 SNTISD-IS-ALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSDI-SVLAKLTNLESL  199 (199)
T ss_dssp             SSCCCC-CG-GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEE
T ss_pred             hhhhcc-cc-cccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCCC-ccccCCCCCCcC
Confidence            999974 33 588999999999999999964 3 489999999999999999863 4445554 5543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=7.7e-14  Score=137.55  Aligned_cols=142  Identities=23%  Similarity=0.373  Sum_probs=123.8

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      ..++.|++.+|.+++..+  +..+++|+.|++++|.+.+..+..-.+.++.++++.|.+++.  ..+..+.+++.|+|++
T Consensus       241 ~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~  316 (384)
T d2omza2         241 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYF  316 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCS
T ss_pred             cccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCccccccccccccccccccccc--cccchhcccCeEECCC
Confidence            579999999999998654  888999999999999999766644458999999999999863  3588899999999999


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecC
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENN  219 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N  219 (495)
                      |++++..+  +..+++|+.|++++|+|++ +| .+.++++|++|++++|++++.++ +..++ |+.|+|++|
T Consensus       317 n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         317 NNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            99998643  7889999999999999985 44 68999999999999999998765 66776 999999988

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.5e-14  Score=125.29  Aligned_cols=125  Identities=25%  Similarity=0.255  Sum_probs=85.7

Q ss_pred             ccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCC
Q 040888           88 QLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKL  165 (495)
Q Consensus        88 ~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L  165 (495)
                      .+.+...|++|||++|+++. +|..+.  ++|++|||++|+|+ .++ .+..+++|++|+|++|+++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence            45667778888888888773 443222  67888888888887 443 47778888888888888876666666778888


Q ss_pred             cEEEccCCcCCCcCc-ccccCCCCCCEEeccCCccccccc----ccCCcc-CcEEE
Q 040888          166 ETLDLSKNQLTGELP-RSFASLSSLKKLYLQNNQFTGSIN----VLGKLP-LDELN  215 (495)
Q Consensus       166 ~~L~ls~N~l~g~~p-~~~~~l~~L~~L~l~~N~l~g~~~----~~~~~~-L~~l~  215 (495)
                      +.|++++|+++.... ..+..+++|++|++++|.++....    .+..++ |+.||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            888888888874311 356777888888888887765431    233344 56554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=5e-14  Score=116.03  Aligned_cols=101  Identities=25%  Similarity=0.324  Sum_probs=58.8

Q ss_pred             cEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCC
Q 040888           96 SYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKN  173 (495)
Q Consensus        96 ~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N  173 (495)
                      +.|||++|+++ .++. +.  ++|++|||++|+|+ .+|+.++.+++|+.|++++|+|++. | .+..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~-~l~~-l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCcc-cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            35566666665 2221 22  55666666666665 4555566666666666666666643 3 3566666666666666


Q ss_pred             cCCCcC-cccccCCCCCCEEeccCCcccc
Q 040888          174 QLTGEL-PRSFASLSSLKKLYLQNNQFTG  201 (495)
Q Consensus       174 ~l~g~~-p~~~~~l~~L~~L~l~~N~l~g  201 (495)
                      +++... ...+..+++|+.|++++|+++.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            666332 2345666666666666666653

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=5.7e-15  Score=141.53  Aligned_cols=96  Identities=28%  Similarity=0.471  Sum_probs=82.9

Q ss_pred             HHHHHhccCCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEE
Q 040888          398 ADLLTATANFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF  471 (495)
Q Consensus       398 ~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~  471 (495)
                      .+++..+++|+..+.||+|+||+||+|+++      +++.||||++..... ....++|.+|++++++++||||++++++
T Consensus         6 ~~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~-~~~~~~~~~E~~il~~l~h~niv~~~~~   84 (301)
T d1lufa_           6 LSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS-ADMQADFQREAALMAEFDNPNIVKLLGV   84 (301)
T ss_dssp             HHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCC-HHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             hhccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcC-hHHHHHHHHHHHHHHhcCCCCcccceee
Confidence            445566788999999999999999999863      357899999976432 2335689999999999999999999999


Q ss_pred             EEeCCEEEEEEEecCCCCHhhhh
Q 040888          472 CSEQGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       472 ~~~~~~~~lv~ey~~~GsL~~~L  494 (495)
                      |...+..++||||+++|+|.++|
T Consensus        85 ~~~~~~~~~v~e~~~~g~L~~~l  107 (301)
T d1lufa_          85 CAVGKPMCLLFEYMAYGDLNEFL  107 (301)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHH
T ss_pred             eccCCceEEEEEecCCCcHHHHH
Confidence            99999999999999999999986

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.50  E-value=1.6e-14  Score=141.10  Aligned_cols=88  Identities=18%  Similarity=0.324  Sum_probs=77.8

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||.||+|.. .+|+.||||+++....  ...+.+.+|+++|++++|||||++++++.+++..++|||
T Consensus        29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~--~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE  106 (352)
T d1koba_          29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYP--LDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILE  106 (352)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH--HHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEE
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcch--hHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            4688889999999999999997 5699999999976432  224678899999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      ||++|+|.+++
T Consensus       107 ~~~gg~L~~~~  117 (352)
T d1koba_         107 FLSGGELFDRI  117 (352)
T ss_dssp             CCCCCBHHHHT
T ss_pred             cCCCChHHHHH
Confidence            99999998865

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.7e-14  Score=131.95  Aligned_cols=145  Identities=15%  Similarity=0.208  Sum_probs=99.0

Q ss_pred             CCCCCcccEEecC-----------CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC---CCCcEEE
Q 040888           56 PCGEHWKGITCSG-----------SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP---PNLKHLD  121 (495)
Q Consensus        56 ~C~~~w~gv~c~~-----------~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~---~~L~~L~  121 (495)
                      .|.|....|.|..           ..+++|+|++|.++...+..|.++++|++|+|++|.+...+|....   +++++|+
T Consensus         5 ~C~C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1           5 ICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   84 (242)
T ss_dssp             SEEECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEE
T ss_pred             cCCCcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccc
Confidence            4667888899963           2589999999999876667899999999999999999877665332   7888888


Q ss_pred             Cc-CCcCCCCcchhccCCCCCcEEEcccCcCCCccc-hhhhCCCCCcEEEccCCcCCCcCcccccCCC-CCCEEeccCCc
Q 040888          122 LS-ENQFSGTVPYSISQMSELKYLNLGSNQLNGQLS-DMFQKNEKLETLDLSKNQLTGELPRSFASLS-SLKKLYLQNNQ  198 (495)
Q Consensus       122 Ls-~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~-~L~~L~l~~N~  198 (495)
                      +. .|++....+..|.++++|+.|++++|.+....+ ..+..+..|..+..+++.+....+..|..++ .++.|++++|+
T Consensus        85 ~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~  164 (242)
T d1xwdc1          85 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  164 (242)
T ss_dssp             EECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             ccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccc
Confidence            76 477887777888999999999999998864322 1223333444444444444433333333332 34444444444


Q ss_pred             cc
Q 040888          199 FT  200 (495)
Q Consensus       199 l~  200 (495)
                      ++
T Consensus       165 l~  166 (242)
T d1xwdc1         165 IQ  166 (242)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=8.8e-15  Score=140.68  Aligned_cols=90  Identities=26%  Similarity=0.528  Sum_probs=73.9

Q ss_pred             cCCcccceeccCCceEEEEEEcCC-CC--EEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCCEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPD-GK--VLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQGHNIL  480 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~-g~--~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~~~~l  480 (495)
                      ++|...+.||+|+||.||+|++++ |.  .||||+++..... ...++|.+|+++|+++ +|||||+++|+|..++..++
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~i   88 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASK-DDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL   88 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC-------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccCh-HHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEE
Confidence            467778999999999999999853 44  5788888644322 2356799999999998 79999999999999999999


Q ss_pred             EEEecCCCCHhhhhC
Q 040888          481 IYDYYRNGSLHEFLH  495 (495)
Q Consensus       481 v~ey~~~GsL~~~L~  495 (495)
                      ||||+++|+|.++|+
T Consensus        89 V~ey~~~g~L~~~l~  103 (309)
T d1fvra_          89 AIEYAPHGNLLDFLR  103 (309)
T ss_dssp             EECCCTTCBHHHHHH
T ss_pred             EEEecCCCcHHHHHh
Confidence            999999999999873

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.49  E-value=2e-14  Score=135.83  Aligned_cols=90  Identities=27%  Similarity=0.383  Sum_probs=77.8

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc-------ccHHHHHHHHHHHhcCC-CCCcceEEEEEEeC
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR-------ANSESFSEIVQNISRIR-HTNIAELVGFCSEQ  475 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~-------~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~  475 (495)
                      ++|...+.||+|+||+||+|+. .+|+.||||+++......       ...+.+.+|++++++++ |||||++++++.++
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            4688889999999999999997 579999999997643211       12346889999999997 99999999999999


Q ss_pred             CEEEEEEEecCCCCHhhhh
Q 040888          476 GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       476 ~~~~lv~ey~~~GsL~~~L  494 (495)
                      +..++|||||++|+|.++|
T Consensus        83 ~~~~ivmE~~~~g~L~~~l  101 (277)
T d1phka_          83 TFFFLVFDLMKKGELFDYL  101 (277)
T ss_dssp             SEEEEEEECCTTCBHHHHH
T ss_pred             cceEEEEEcCCCchHHHHH
Confidence            9999999999999999887

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=5.1e-14  Score=116.02  Aligned_cols=101  Identities=28%  Similarity=0.371  Sum_probs=88.7

Q ss_pred             cEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCC
Q 040888          118 KHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNN  197 (495)
Q Consensus       118 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N  197 (495)
                      +.|||++|+++ .++ .+..+++|++|++++|+|+ .+|+.+..+++|+.|++++|.|++ +| .+..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            57999999998 555 4899999999999999998 578889999999999999999995 45 4899999999999999


Q ss_pred             cccccc--cccCCcc-CcEEEeecCCCcc
Q 040888          198 QFTGSI--NVLGKLP-LDELNVENNKFSG  223 (495)
Q Consensus       198 ~l~g~~--~~~~~~~-L~~l~l~~N~l~g  223 (495)
                      +++...  ..+..++ |+.+++++|+++.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            998654  4566666 9999999999975

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=1.8e-14  Score=138.33  Aligned_cols=88  Identities=24%  Similarity=0.362  Sum_probs=76.1

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      .|+..+.||+|+||.||+|+. .+|+.||||++....... ...+.|.+|+++|++++|||||+++++|.+++..++|||
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E   95 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEE
Confidence            377789999999999999987 568899999997654322 234679999999999999999999999999999999999


Q ss_pred             ecCCCCHhhh
Q 040888          484 YYRNGSLHEF  493 (495)
Q Consensus       484 y~~~GsL~~~  493 (495)
                      ||++|+|..+
T Consensus        96 ~~~~g~l~~~  105 (309)
T d1u5ra_          96 YCLGSASDLL  105 (309)
T ss_dssp             CCSEEHHHHH
T ss_pred             ecCCCchHHH
Confidence            9999988754

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.6e-14  Score=138.78  Aligned_cols=91  Identities=20%  Similarity=0.293  Sum_probs=79.8

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      .++|...+.||+|+||+||+|+. .+|+.||||++++.... ....+.+.+|+++|++++|||||++++++.+++..++|
T Consensus         4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv   83 (337)
T d1o6la_           4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccc
Confidence            35788899999999999999997 56999999999764321 22357789999999999999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      ||||++|+|.+++
T Consensus        84 ~ey~~gg~L~~~~   96 (337)
T d1o6la_          84 MEYANGGELFFHL   96 (337)
T ss_dssp             EECCTTCBHHHHH
T ss_pred             eeccCCCchhhhh
Confidence            9999999998875

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.7e-14  Score=135.49  Aligned_cols=89  Identities=24%  Similarity=0.427  Sum_probs=75.0

Q ss_pred             cCCcccceeccCCceEEEEEEcCCC-----CEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDG-----KVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g-----~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      +.|...++||+|+||.||+|.++..     ..||||++..... ....++|.+|++++++++|||||+++|+|.+.+..+
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~-~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~   85 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYT-EKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM   85 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCC-HHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccC-hHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceE
Confidence            3567789999999999999998532     3799999975432 223567999999999999999999999999999999


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +|||||++|++.+++
T Consensus        86 ~v~e~~~~~~l~~~~  100 (283)
T d1mqba_          86 IITEYMENGALDKFL  100 (283)
T ss_dssp             EEEECCTTEEHHHHH
T ss_pred             EEEEecccCcchhhh
Confidence            999999999988754

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=3.3e-14  Score=136.87  Aligned_cols=90  Identities=24%  Similarity=0.366  Sum_probs=78.6

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||+||+|+. .+|+.||||+++..... ....+.+.+|+.++++++|||||++++++.+++..++||
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm   83 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   83 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEe
Confidence            5688889999999999999997 56999999999754321 223577999999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      |||++|+|.+++
T Consensus        84 E~~~gg~l~~~~   95 (316)
T d1fota_          84 DYIEGGELFSLL   95 (316)
T ss_dssp             CCCCSCBHHHHH
T ss_pred             eecCCccccccc
Confidence            999999998765

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=8.6e-15  Score=140.69  Aligned_cols=90  Identities=19%  Similarity=0.366  Sum_probs=77.3

Q ss_pred             ccCCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGH  477 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~  477 (495)
                      .++|...+.||+|+||.||+|.+.      +++.||||+++.... ......|.+|++++++++|||||+++|+|..++.
T Consensus        19 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~-~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~   97 (308)
T d1p4oa_          19 REKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAAS-MRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP   97 (308)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSC-HHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSS
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccC-hHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCc
Confidence            456777899999999999999873      357899999975432 2234579999999999999999999999999999


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++|||||++|+|.+++
T Consensus        98 ~~lv~e~~~~g~l~~~~  114 (308)
T d1p4oa_          98 TLVIMELMTRGDLKSYL  114 (308)
T ss_dssp             CEEEEECCTTCBHHHHH
T ss_pred             eeEEEeecCCCCHHHHH
Confidence            99999999999999876

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.5e-14  Score=121.09  Aligned_cols=122  Identities=19%  Similarity=0.163  Sum_probs=101.2

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCC-CCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEcc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPY-QLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLG  147 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~-~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~  147 (495)
                      .++.+|+|++|+++.. +..+..+++|+.|||++|.++. ++. .-.++|++|+|++|+++...+..+..+++|+.|+|+
T Consensus        18 ~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~-l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          18 VRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             TSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-ECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             CcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc-cCCcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            4789999999999865 6667889999999999999984 432 223899999999999996555667789999999999


Q ss_pred             cCcCCCccc-hhhhCCCCCcEEEccCCcCCCcCcc----cccCCCCCCEEe
Q 040888          148 SNQLNGQLS-DMFQKNEKLETLDLSKNQLTGELPR----SFASLSSLKKLY  193 (495)
Q Consensus       148 ~N~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~p~----~~~~l~~L~~L~  193 (495)
                      +|+|+..-. ..+..+++|++|++++|.++. .|.    .+..+++|++||
T Consensus        96 ~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          96 NNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             SCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred             cccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence            999985422 468899999999999999974 343    578899999997

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.9e-14  Score=135.89  Aligned_cols=90  Identities=17%  Similarity=0.356  Sum_probs=76.1

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccc-cccHHHHHHHHHHHh-cCCCCCcceEEEEEEeCCEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQ-RANSESFSEIVQNIS-RIRHTNIAELVGFCSEQGHNILI  481 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~-~l~H~niv~l~g~~~~~~~~~lv  481 (495)
                      ++|...+.||+|+||+||+|+.. +|+.||||+++..... ....+.+..|+.++. .++|||||++++++.+++..++|
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence            57888899999999999999984 6999999999754321 223456777777765 68999999999999999999999


Q ss_pred             EEecCCCCHhhhh
Q 040888          482 YDYYRNGSLHEFL  494 (495)
Q Consensus       482 ~ey~~~GsL~~~L  494 (495)
                      ||||++|+|.+++
T Consensus        82 mEy~~~g~L~~~i   94 (320)
T d1xjda_          82 MEYLNGGDLMYHI   94 (320)
T ss_dssp             EECCTTCBHHHHH
T ss_pred             EeecCCCcHHHHh
Confidence            9999999999986

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=8.2e-13  Score=120.72  Aligned_cols=143  Identities=25%  Similarity=0.399  Sum_probs=108.0

Q ss_pred             CCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCC-CCCCCCCcEEECcCCcCCCCcc--------------
Q 040888           68 GSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIP-YQLPPNLKHLDLSENQFSGTVP--------------  132 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~~L~~L~Ls~N~l~g~~p--------------  132 (495)
                      .++++.|+|++|.+++..|  +..+++|++|++++|.++. ++ ..-.++|+.+++++|.+.+..+              
T Consensus        62 l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~  138 (227)
T d1h6ua2          62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL  138 (227)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred             CCCCcEeecCCceeecccc--ccccccccccccccccccc-cccccccccccccccccccccccchhccccchhhhhchh
Confidence            4688999999998887554  7778888888888887763 32 1112566666666655543221              


Q ss_pred             ------hhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCccccccccc
Q 040888          133 ------YSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVL  206 (495)
Q Consensus       133 ------~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~  206 (495)
                            ..+.++++|+.|++++|.+++..+  +.++++|+.|+|++|++++ +| .+.++++|++|+|++|++++.. .+
T Consensus       139 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~-~l  213 (227)
T d1h6ua2         139 NQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVS-PL  213 (227)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCG-GG
T ss_pred             hhhchhhhhccccccccccccccccccchh--hcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCc-cc
Confidence                  235677889999999999986543  8899999999999999986 44 3889999999999999998654 46


Q ss_pred             CCcc-CcEEEeec
Q 040888          207 GKLP-LDELNVEN  218 (495)
Q Consensus       207 ~~~~-L~~l~l~~  218 (495)
                      ..++ |+.|++++
T Consensus       214 ~~l~~L~~L~lsn  226 (227)
T d1h6ua2         214 ANTSNLFIVTLTN  226 (227)
T ss_dssp             TTCTTCCEEEEEE
T ss_pred             ccCCCCCEEEeeC
Confidence            6777 99999974

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=8.3e-14  Score=133.75  Aligned_cols=84  Identities=25%  Similarity=0.495  Sum_probs=70.0

Q ss_pred             cceeccCCceEEEEEEcCC--C--CEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC-CEEEEEEEe
Q 040888          410 GRLLGEGTIGRVYRAKYPD--G--KVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ-GHNILIYDY  484 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~~--g--~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~-~~~~lv~ey  484 (495)
                      .++||+|+||+||+|.+.+  +  ..||||+++.... ....++|.+|+++|++++|||||+++|+|... +..++||||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~  110 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITD-IGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPY  110 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCC-HHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEEC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccC-HHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEE
Confidence            4789999999999999843  2  3689999975322 23357899999999999999999999999864 588999999


Q ss_pred             cCCCCHhhhh
Q 040888          485 YRNGSLHEFL  494 (495)
Q Consensus       485 ~~~GsL~~~L  494 (495)
                      |++|+|.+++
T Consensus       111 ~~~g~l~~~~  120 (311)
T d1r0pa_         111 MKHGDLRNFI  120 (311)
T ss_dssp             CTTCBHHHHH
T ss_pred             eecCchhhhh
Confidence            9999998875

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.9e-14  Score=137.12  Aligned_cols=91  Identities=29%  Similarity=0.499  Sum_probs=77.7

Q ss_pred             ccCCcccceeccCCceEEEEEEc------CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeCC
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQG  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~~  476 (495)
                      .++|...+.||+|+||.||+|++      .+++.||||+++.... .....+|.+|+.+++++ +|||||+++|+|...+
T Consensus        22 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~-~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~  100 (311)
T d1t46a_          22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAH-LTEREALMSELKVLSYLGNHMNIVNLLGACTIGG  100 (311)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC-HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             HHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccC-HHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCC
Confidence            45677789999999999999985      2467899999976543 22356799999999999 6999999999999999


Q ss_pred             EEEEEEEecCCCCHhhhhC
Q 040888          477 HNILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L~  495 (495)
                      ..++|||||++|+|.++|+
T Consensus       101 ~~~lvmE~~~~g~l~~~l~  119 (311)
T d1t46a_         101 PTLVITEYCCYGDLLNFLR  119 (311)
T ss_dssp             SCEEEEECCTTEEHHHHHH
T ss_pred             EEEEEEEcCCCCCHHHHHH
Confidence            9999999999999998863

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.1e-14  Score=136.91  Aligned_cols=91  Identities=27%  Similarity=0.506  Sum_probs=75.0

Q ss_pred             hccCCcccceeccCCceEEEEEEcCC------CCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEeC
Q 040888          403 ATANFATGRLLGEGTIGRVYRAKYPD------GKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSEQ  475 (495)
Q Consensus       403 ~t~~f~~~~~iG~G~~g~Vy~~~~~~------g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~~  475 (495)
                      ..++|...+.||+|+||+||+|+...      ...||||.+..... ....+.|.+|+.++.++ +|||||+++++|...
T Consensus        35 ~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~  113 (325)
T d1rjba_          35 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD-SSEREALMSELKMMTQLGSHENIVNLLGACTLS  113 (325)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC-------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             CHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccC-HHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeC
Confidence            34678888999999999999998732      23699999875432 22356799999999998 899999999999999


Q ss_pred             CEEEEEEEecCCCCHhhhh
Q 040888          476 GHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       476 ~~~~lv~ey~~~GsL~~~L  494 (495)
                      +..++|||||++|+|.++|
T Consensus       114 ~~~~lv~Ey~~~g~L~~~l  132 (325)
T d1rjba_         114 GPIYLIFEYCCYGDLLNYL  132 (325)
T ss_dssp             SSCEEEEECCTTCBHHHHH
T ss_pred             CeEEEEEEcCCCCcHHHHH
Confidence            9999999999999999987

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.43  E-value=8.6e-14  Score=131.50  Aligned_cols=90  Identities=18%  Similarity=0.255  Sum_probs=76.1

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC----EE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQG----HN  478 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~----~~  478 (495)
                      ++|...+.||+|+||.||+|+. .+|+.||||+++...... ...+.|.+|++++++++|||||++++++...+    ..
T Consensus         7 drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~   86 (277)
T d1o6ya_           7 DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP   86 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred             ceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceE
Confidence            4578889999999999999997 579999999997654322 23467999999999999999999999998653    47


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++||||+++|+|.+++
T Consensus        87 ~lvmE~~~g~~L~~~~  102 (277)
T d1o6ya_          87 YIVMEYVDGVTLRDIV  102 (277)
T ss_dssp             EEEEECCCEEEHHHHH
T ss_pred             EEEEECCCCCEehhhh
Confidence            8999999999998765

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.42  E-value=8.6e-14  Score=132.11  Aligned_cols=89  Identities=20%  Similarity=0.330  Sum_probs=78.4

Q ss_pred             cCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEe
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDY  484 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey  484 (495)
                      ++|...+.||+|+||+||+|+.++|+.||||+++.........+.|.+|+.+|++++|||||++++++..++..++++||
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEe
Confidence            46788899999999999999999999999999976544333467899999999999999999999999999999999999


Q ss_pred             cCCCCHhhh
Q 040888          485 YRNGSLHEF  493 (495)
Q Consensus       485 ~~~GsL~~~  493 (495)
                      +.++.+..+
T Consensus        82 ~~~~~~~~~   90 (286)
T d1ob3a_          82 LDQDLKKLL   90 (286)
T ss_dssp             CSEEHHHHH
T ss_pred             ehhhhHHHH
Confidence            988776554

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.3e-13  Score=131.65  Aligned_cols=86  Identities=24%  Similarity=0.410  Sum_probs=71.8

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      ++|...+.||+|+||+||+|+. .+|+.||||+++.........+.+.+|++++++++|||||++++++.+++..++|||
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence            5788899999999999999997 579999999997654333345789999999999999999999999999999999999


Q ss_pred             ecCCCCH
Q 040888          484 YYRNGSL  490 (495)
Q Consensus       484 y~~~GsL  490 (495)
                      |+.++.+
T Consensus        82 ~~~~~~~   88 (298)
T d1gz8a_          82 FLHQDLK   88 (298)
T ss_dssp             CCSEEHH
T ss_pred             ecCCchh
Confidence            9976533

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.1e-13  Score=132.40  Aligned_cols=84  Identities=27%  Similarity=0.487  Sum_probs=67.7

Q ss_pred             CCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHH--HHHHHHhcCCCCCcceEEEEEEeCC----EEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFS--EIVQNISRIRHTNIAELVGFCSEQG----HNI  479 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~--~e~~~l~~l~H~niv~l~g~~~~~~----~~~  479 (495)
                      +|...+.||+|+||.||+|++ +|+.||||+++...     .+++.  .|+..+.+++|||||+++|+|..++    ..+
T Consensus         4 ~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~-----~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~   77 (303)
T d1vjya_           4 TIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE-----ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW   77 (303)
T ss_dssp             GEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGGG-----HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred             EEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccc-----hhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEE
Confidence            455678899999999999997 68899999996532     23344  4555556789999999999998754    578


Q ss_pred             EEEEecCCCCHhhhhC
Q 040888          480 LIYDYYRNGSLHEFLH  495 (495)
Q Consensus       480 lv~ey~~~GsL~~~L~  495 (495)
                      +|||||++|+|.++|+
T Consensus        78 lv~Ey~~~g~L~~~l~   93 (303)
T d1vjya_          78 LVSDYHEHGSLFDYLN   93 (303)
T ss_dssp             EEEECCTTCBHHHHHH
T ss_pred             EEEecccCCCHHHHHh
Confidence            9999999999999874

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.7e-14  Score=131.96  Aligned_cols=89  Identities=24%  Similarity=0.418  Sum_probs=73.6

Q ss_pred             ccCCcccceeccCCceEEEEEEcCC----CCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYPD----GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~~----g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      .++|...+.||+|+||.||+|++..    +..||||.++.... ....+.|.+|++++++++|||||+++|+|. ++..+
T Consensus         6 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~-~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~   83 (273)
T d1mp8a_           6 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTS-DSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW   83 (273)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTS-HHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCE
T ss_pred             HHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeEE
Confidence            3567888999999999999998742    35789999865432 223567999999999999999999999995 46689


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +||||+++|+|.+++
T Consensus        84 iv~E~~~~g~l~~~~   98 (273)
T d1mp8a_          84 IIMELCTLGELRSFL   98 (273)
T ss_dssp             EEEECCTTEEHHHHH
T ss_pred             EEEEeccCCcHHhhh
Confidence            999999999998764

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.39  E-value=2.3e-13  Score=133.42  Aligned_cols=91  Identities=22%  Similarity=0.324  Sum_probs=74.7

Q ss_pred             ccCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCccccc-ccHHHHHH---HHHHHhcCCCCCcceEEEEEEeCCEE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR-ANSESFSE---IVQNISRIRHTNIAELVGFCSEQGHN  478 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~-~~~~~f~~---e~~~l~~l~H~niv~l~g~~~~~~~~  478 (495)
                      .++|...+.||+|+||.||+|+.. +|+.||||++....... .....+.+   |+++++.++|||||++++++...+..
T Consensus         3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~   82 (364)
T d1omwa3           3 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL   82 (364)
T ss_dssp             STTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             HHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEE
Confidence            357888999999999999999974 69999999996543211 12233444   47778888999999999999999999


Q ss_pred             EEEEEecCCCCHhhhh
Q 040888          479 ILIYDYYRNGSLHEFL  494 (495)
Q Consensus       479 ~lv~ey~~~GsL~~~L  494 (495)
                      ++|||||++|+|.++|
T Consensus        83 ~ivmE~~~gg~L~~~l   98 (364)
T d1omwa3          83 SFILDLMNGGDLHYHL   98 (364)
T ss_dssp             EEEECCCCSCBHHHHH
T ss_pred             EEEEEecCCCcHHHHH
Confidence            9999999999999876

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.6e-13  Score=129.25  Aligned_cols=89  Identities=22%  Similarity=0.349  Sum_probs=64.8

Q ss_pred             cCCcccceeccCCceEEEEEEcC--CC--CEEEEEEecCccccc-ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP--DG--KVLAVKKIDSSHFQR-ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~--~g--~~vavK~l~~~~~~~-~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      ++|+..+.||+|+||.||+|++.  ++  ..||||++....... ...++|.+|+++|++++|||||+++|+|.+ +..+
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~~   86 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPMK   86 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cchh
Confidence            45777889999999999999863  33  378999987653322 235689999999999999999999999965 4568


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +||||+++|++.+++
T Consensus        87 lv~e~~~~~~l~~~~  101 (273)
T d1u46a_          87 MVTELAPLGSLLDRL  101 (273)
T ss_dssp             EEEECCTTCBHHHHH
T ss_pred             eeeeeecCcchhhhh
Confidence            999999999998764

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=3.8e-13  Score=131.14  Aligned_cols=90  Identities=19%  Similarity=0.279  Sum_probs=78.6

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccc-cccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQ-RANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||.||+|+. .+|+.||||++...... ....+.+.+|+++|++++|||||++++++...+..++|+
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~  120 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccc
Confidence            4688889999999999999997 46999999999754321 223567899999999999999999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+++|+|.+++
T Consensus       121 e~~~~g~l~~~l  132 (350)
T d1rdqe_         121 EYVAGGEMFSHL  132 (350)
T ss_dssp             ECCTTCBHHHHH
T ss_pred             ccccccchhhhH
Confidence            999999998875

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=5.1e-13  Score=128.64  Aligned_cols=88  Identities=19%  Similarity=0.443  Sum_probs=70.2

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCC----EEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGK----VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNI  479 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~----~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~  479 (495)
                      .+|+..+.||+|+||+||+|.+. +|+    .||||+++.... ....++|.+|++++++++|||||+++|+|.++ ..+
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~~   86 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS-PKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQ   86 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC-----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SEE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-Cee
Confidence            35888899999999999999874 444    589999875432 23467899999999999999999999999865 467


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      +++||+.+|+|.+++
T Consensus        87 ~v~e~~~~~~l~~~~  101 (317)
T d1xkka_          87 LITQLMPFGCLLDYV  101 (317)
T ss_dssp             EEEECCTTCBHHHHH
T ss_pred             EEEEeccCCcccccc
Confidence            889999999998764

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.5e-13  Score=129.67  Aligned_cols=84  Identities=21%  Similarity=0.358  Sum_probs=68.0

Q ss_pred             cceeccCCceEEEEEEcC-CCCEEEEEEecCccccc---ccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEEec
Q 040888          410 GRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQR---ANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYY  485 (495)
Q Consensus       410 ~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~---~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~ey~  485 (495)
                      .++||+|+||+||+|+.. +|+.||||+++......   ...+.+.+|++++++++|||||++++++..++..++||||+
T Consensus         3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~   82 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFM   82 (299)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECC
T ss_pred             ceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhh
Confidence            478999999999999984 69999999997653321   11356899999999999999999999999999999999999


Q ss_pred             CCCCHhhh
Q 040888          486 RNGSLHEF  493 (495)
Q Consensus       486 ~~GsL~~~  493 (495)
                      ++|++..+
T Consensus        83 ~~~~~~~~   90 (299)
T d1ua2a_          83 ETDLEVII   90 (299)
T ss_dssp             SEEHHHHH
T ss_pred             cchHHhhh
Confidence            98877654

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.2e-13  Score=126.86  Aligned_cols=90  Identities=19%  Similarity=0.317  Sum_probs=78.7

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCCEEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYD  483 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  483 (495)
                      +.|+..+.||+|+||+||+|+. .+++.||||+++.........+.+.+|+.+++.++|||||+++++|...+..++|+|
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEee
Confidence            4678889999999999999997 578999999997654433446789999999999999999999999999999999999


Q ss_pred             ecCCCCHhhhh
Q 040888          484 YYRNGSLHEFL  494 (495)
Q Consensus       484 y~~~GsL~~~L  494 (495)
                      |+.+++|..++
T Consensus        82 ~~~~~~l~~~~   92 (292)
T d1unla_          82 FCDQDLKKYFD   92 (292)
T ss_dssp             CCSEEHHHHHH
T ss_pred             ecccccccccc
Confidence            99998887654

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.6e-13  Score=131.17  Aligned_cols=90  Identities=29%  Similarity=0.492  Sum_probs=70.8

Q ss_pred             ccCCcccceeccCCceEEEEEEcC--------CCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEe
Q 040888          404 TANFATGRLLGEGTIGRVYRAKYP--------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSE  474 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~~--------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~  474 (495)
                      .++|...+.||+|+||.||+|+..        ++..||||+++..... ....+|.+|+..+.++ +|||||+++++|.+
T Consensus        12 ~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~-~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~   90 (299)
T d1fgka_          12 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNIINLLGACTQ   90 (299)
T ss_dssp             GGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCH-HHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             HHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccCh-HHHHHHHHHHHHHHHhcCCCeEEeccccccc
Confidence            346677899999999999999862        2347999999765432 2356789999999888 89999999999999


Q ss_pred             CCEEEEEEEecCCCCHhhhh
Q 040888          475 QGHNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       475 ~~~~~lv~ey~~~GsL~~~L  494 (495)
                      ++..++|||||++|+|.++|
T Consensus        91 ~~~~~~v~e~~~~g~l~~~i  110 (299)
T d1fgka_          91 DGPLYVIVEYASKGNLREYL  110 (299)
T ss_dssp             SSSCEEEECCCTTCBHHHHH
T ss_pred             CCeEEEEEEccCCCcHHHHH
Confidence            99999999999999999986

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.3e-12  Score=109.36  Aligned_cols=85  Identities=25%  Similarity=0.284  Sum_probs=60.0

Q ss_pred             CCCcEEECcCC-cCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEe
Q 040888          115 PNLKHLDLSEN-QFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLY  193 (495)
Q Consensus       115 ~~L~~L~Ls~N-~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  193 (495)
                      ++|+.|+|++| .++...+..|.++++|+.|+|++|+|+...|..|..+++|++|+|++|+|+. +|.......+|+.|+
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~~~~l~~L~  109 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELV  109 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTCSCCCCEEE
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcc-cChhhhccccccccc
Confidence            45555666544 3554445667888888888888888887777888888888888888888884 444333334677888


Q ss_pred             ccCCccc
Q 040888          194 LQNNQFT  200 (495)
Q Consensus       194 l~~N~l~  200 (495)
                      |++|.|.
T Consensus       110 L~~Np~~  116 (156)
T d2ifga3         110 LSGNPLH  116 (156)
T ss_dssp             CCSSCCC
T ss_pred             cCCCccc
Confidence            8888764

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=7e-13  Score=128.51  Aligned_cols=84  Identities=15%  Similarity=0.254  Sum_probs=69.7

Q ss_pred             ccCCccc-ceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEEEEEe----CC
Q 040888          404 TANFATG-RLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVGFCSE----QG  476 (495)
Q Consensus       404 t~~f~~~-~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g~~~~----~~  476 (495)
                      .++|... ++||+|+||+||+|+. .+++.||||+++.       .+.+.+|++++.++ +|||||++++++..    +.
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~-------~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~   82 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRK   82 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC-------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC-------cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCC
Confidence            3567654 5699999999999997 5699999999854       24577899887654 89999999999875    35


Q ss_pred             EEEEEEEecCCCCHhhhh
Q 040888          477 HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~L  494 (495)
                      ..++|||||++|+|.++|
T Consensus        83 ~~~ivmEy~~gg~L~~~i  100 (335)
T d2ozaa1          83 CLLIVMECLDGGELFSRI  100 (335)
T ss_dssp             EEEEEEECCCSEEHHHHH
T ss_pred             EEEEEEECCCCCcHHHHH
Confidence            679999999999999986

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8.7e-12  Score=106.71  Aligned_cols=106  Identities=19%  Similarity=0.170  Sum_probs=91.3

Q ss_pred             CCcEEECcCCcCCCCcchhccCCCCCcEEEcccCc-CCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEec
Q 040888          116 NLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQ-LNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYL  194 (495)
Q Consensus       116 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~-l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  194 (495)
                      ..+.++.+++++. .+|..+..+++|+.|++++|+ |+...+..|.++++|+.|+|++|+|+...|..|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3455777777776 567788889999999998764 88777788999999999999999999888889999999999999


Q ss_pred             cCCcccccc-cccCCccCcEEEeecCCCc
Q 040888          195 QNNQFTGSI-NVLGKLPLDELNVENNKFS  222 (495)
Q Consensus       195 ~~N~l~g~~-~~~~~~~L~~l~l~~N~l~  222 (495)
                      ++|+|+... ..+..++|+.|+|++|++.
T Consensus        88 s~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cCCCCcccChhhhccccccccccCCCccc
Confidence            999999766 4566667999999999986

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1e-12  Score=126.65  Aligned_cols=90  Identities=26%  Similarity=0.372  Sum_probs=76.8

Q ss_pred             cCCcccceeccCCceEEEEEEc----CCCCEEEEEEecCcccc--cccHHHHHHHHHHHhcCCC-CCcceEEEEEEeCCE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY----PDGKVLAVKKIDSSHFQ--RANSESFSEIVQNISRIRH-TNIAELVGFCSEQGH  477 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~----~~g~~vavK~l~~~~~~--~~~~~~f~~e~~~l~~l~H-~niv~l~g~~~~~~~  477 (495)
                      ++|+..+.||+|+||+||+|+.    .+|+.||||.++.....  ....+.+.+|++++.+++| |||+++++++.....
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~  103 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  103 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence            5688899999999999999985    24889999999764321  1224568899999999977 899999999999999


Q ss_pred             EEEEEEecCCCCHhhhh
Q 040888          478 NILIYDYYRNGSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L  494 (495)
                      .++|+|||.+|+|.+++
T Consensus       104 ~~~v~e~~~~~~L~~~i  120 (322)
T d1vzoa_         104 LHLILDYINGGELFTHL  120 (322)
T ss_dssp             EEEEECCCCSCBHHHHH
T ss_pred             eeeeeecccccHHHHHH
Confidence            99999999999998876

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.26  E-value=3.6e-12  Score=123.18  Aligned_cols=85  Identities=16%  Similarity=0.342  Sum_probs=73.4

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-CCCcceEEEEEEeC--CEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-HTNIAELVGFCSEQ--GHNIL  480 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~--~~~~l  480 (495)
                      ++|...+.||+|+||+||+|+. .+|+.||||+++...     .+++.+|+++|.+++ ||||+++++++...  ...++
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~-----~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~  109 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK-----KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPAL  109 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSC-----HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHH-----HHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeE
Confidence            4688899999999999999997 568999999997532     467899999999995 99999999999754  46889


Q ss_pred             EEEecCCCCHhhhh
Q 040888          481 IYDYYRNGSLHEFL  494 (495)
Q Consensus       481 v~ey~~~GsL~~~L  494 (495)
                      ||||+++|+|..+.
T Consensus       110 v~e~~~~~~L~~~~  123 (328)
T d3bqca1         110 VFEHVNNTDFKQLY  123 (328)
T ss_dssp             EEECCCSCBGGGTT
T ss_pred             EEeecCCCcHHHHh
Confidence            99999999997754

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.7e-12  Score=123.89  Aligned_cols=96  Identities=22%  Similarity=0.431  Sum_probs=74.0

Q ss_pred             HHHHHhccCCcccceeccCCceEEEEEEcC------CCCEEEEEEecCcccccccHHHHHHHHHHHhcC-CCCCcceEEE
Q 040888          398 ADLLTATANFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAELVG  470 (495)
Q Consensus       398 ~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l-~H~niv~l~g  470 (495)
                      ..++...++|...+.||+|+||.||+|...      +++.||||+++.... ....+.|.+|++.+.++ +|+|||.+++
T Consensus         6 ~~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~-~~~~~~~~~e~~~l~~~~~h~~iv~~~~   84 (299)
T d1ywna1           6 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT-HSEHRALMSELKILIHIGHHLNVVNLLG   84 (299)
T ss_dssp             HHHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----C-HHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             ccccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccC-cHHHHHHHHHHHHHHhhcCCCeEEEeee
Confidence            334444567888999999999999999862      356899999975433 22356788888888877 7899999999


Q ss_pred             EEEeCC-EEEEEEEecCCCCHhhhh
Q 040888          471 FCSEQG-HNILIYDYYRNGSLHEFL  494 (495)
Q Consensus       471 ~~~~~~-~~~lv~ey~~~GsL~~~L  494 (495)
                      ++...+ ..++|||||++|+|.++|
T Consensus        85 ~~~~~~~~~~iv~E~~~~g~L~~~l  109 (299)
T d1ywna1          85 ACTKPGGPLMVIVEFCKFGNLSTYL  109 (299)
T ss_dssp             EECSTTSCCEEEEECCTTCBHHHHH
T ss_pred             eeccCCCeEEEEEEecCCCcHHHHH
Confidence            987654 578999999999999986

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.9e-12  Score=123.23  Aligned_cols=89  Identities=19%  Similarity=0.413  Sum_probs=71.4

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC--------
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ--------  475 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~--------  475 (495)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++..........+++.+|+++|++++|||++++++++...        
T Consensus        10 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~   89 (318)
T d3blha1          10 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK   89 (318)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC---------
T ss_pred             CCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccccC
Confidence            5688889999999999999997 5799999999976544344467899999999999999999999998653        


Q ss_pred             CEEEEEEEecCCCCHhhh
Q 040888          476 GHNILIYDYYRNGSLHEF  493 (495)
Q Consensus       476 ~~~~lv~ey~~~GsL~~~  493 (495)
                      ...++||||+++|.+..+
T Consensus        90 ~~~~iv~e~~~~~~~~~~  107 (318)
T d3blha1          90 GSIYLVFDFCEHDLAGLL  107 (318)
T ss_dssp             -CEEEEEECCCEEHHHHH
T ss_pred             ceEEEEEeccCCCccchh
Confidence            347899999988766543

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.8e-12  Score=125.38  Aligned_cols=87  Identities=16%  Similarity=0.224  Sum_probs=70.5

Q ss_pred             cCCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC------CE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ------GH  477 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~------~~  477 (495)
                      +.|...+.||+|+||+||+|+.. +|+.||||++..........+.+.+|++++++++|||||++++++...      ..
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~   96 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD   96 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence            56888899999999999999974 699999999976544333356789999999999999999999999643      57


Q ss_pred             EEEEEEecCCCCHh
Q 040888          478 NILIYDYYRNGSLH  491 (495)
Q Consensus       478 ~~lv~ey~~~GsL~  491 (495)
                      .++||||+.+|.+.
T Consensus        97 ~~iv~Ey~~~~l~~  110 (355)
T d2b1pa1          97 VYLVMELMDANLCQ  110 (355)
T ss_dssp             EEEEEECCSEEHHH
T ss_pred             eEEEEeccchHHHH
Confidence            89999999765443

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2e-12  Score=126.03  Aligned_cols=92  Identities=15%  Similarity=0.240  Sum_probs=76.0

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeC-----CE
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQ-----GH  477 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~-----~~  477 (495)
                      .+.|...+.||+|+||+||+|+. .+|+.||||+++.........+.+.+|+++|++++|||+|++++++...     ..
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            45688889999999999999996 5799999999986544333456789999999999999999999998643     33


Q ss_pred             EEEEEEecCCCCHhhhhC
Q 040888          478 NILIYDYYRNGSLHEFLH  495 (495)
Q Consensus       478 ~~lv~ey~~~GsL~~~L~  495 (495)
                      .++++||+.+|+|.++++
T Consensus        97 ~~~i~~~~~gg~L~~~~~  114 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVK  114 (348)
T ss_dssp             CCEEEEECCSEEHHHHHT
T ss_pred             eEEEEEeecCCchhhhcc
Confidence            467788889999998864

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.3e-12  Score=125.48  Aligned_cols=89  Identities=18%  Similarity=0.262  Sum_probs=67.4

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC------
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG------  476 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~------  476 (495)
                      .+.|...+.||+|+||+||+|.. .+|+.||||+++.........+.+.+|+++|++++|||||+++++|...+      
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence            35678889999999999999997 56999999999765433334567899999999999999999999997654      


Q ss_pred             EEEEEEEecCCCCHhhh
Q 040888          477 HNILIYDYYRNGSLHEF  493 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~~  493 (495)
                      ..++||||+ +++|..+
T Consensus        97 ~~~lv~e~~-~~~l~~~  112 (346)
T d1cm8a_          97 DFYLVMPFM-GTDLGKL  112 (346)
T ss_dssp             CCEEEEECC-SEEHHHH
T ss_pred             eEEEEEecc-cccHHHH
Confidence            468999999 4566654

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.5e-12  Score=120.97  Aligned_cols=90  Identities=20%  Similarity=0.410  Sum_probs=73.5

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCccccc----ccHHHHHHHHHHHhcCC--CCCcceEEEEEEeCCE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQR----ANSESFSEIVQNISRIR--HTNIAELVGFCSEQGH  477 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~----~~~~~f~~e~~~l~~l~--H~niv~l~g~~~~~~~  477 (495)
                      ++|...+.||+|+||+||+|+. .+|+.||||++.......    ...+.+.+|++++++++  |||||++++++..++.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            4578889999999999999997 579999999997543221    11234678999999986  9999999999999999


Q ss_pred             EEEEEEecCC-CCHhhhh
Q 040888          478 NILIYDYYRN-GSLHEFL  494 (495)
Q Consensus       478 ~~lv~ey~~~-GsL~~~L  494 (495)
                      .++||||+.+ +++.+++
T Consensus        84 ~~lv~e~~~~~~~l~~~~  101 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFI  101 (273)
T ss_dssp             EEEEEECCSSEEEHHHHH
T ss_pred             EEEEEEeccCcchHHHHH
Confidence            9999999976 5676654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=6e-14  Score=125.57  Aligned_cols=114  Identities=26%  Similarity=0.320  Sum_probs=86.5

Q ss_pred             cccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEEcccCcCCCccchhhhCC
Q 040888           85 LGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLNLGSNQLNGQLSDMFQKN  162 (495)
Q Consensus        85 ~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l  162 (495)
                      ++.++..+++|++|+|++|+++. ++ .+.  ++|+.|+|++|+|+ .+|..+..+++|+.|++++|+++..  +.+..+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l  114 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccccc
Confidence            45678888899999999998874 44 233  78999999999887 5666556667888999999988853  346778


Q ss_pred             CCCcEEEccCCcCCCcCc-ccccCCCCCCEEeccCCcccccc
Q 040888          163 EKLETLDLSKNQLTGELP-RSFASLSSLKKLYLQNNQFTGSI  203 (495)
Q Consensus       163 ~~L~~L~ls~N~l~g~~p-~~~~~l~~L~~L~l~~N~l~g~~  203 (495)
                      ++|+.|++++|+++.... ..+..+++|+.|+|++|+++...
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~  156 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHH
T ss_pred             ccccccccccchhccccccccccCCCccceeecCCCccccCc
Confidence            888899999998874322 46788888889998888876543

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=9.6e-12  Score=121.22  Aligned_cols=79  Identities=27%  Similarity=0.437  Sum_probs=64.6

Q ss_pred             CCcccceeccCCceEEEEEEcC-CCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC------EE
Q 040888          406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG------HN  478 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~------~~  478 (495)
                      +|...++||+|+||+||+|+.. +|+.||||++.....      .+.+|+++|++++|||||+++++|....      ..
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~------~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~   94 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR------FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYL   94 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS------SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch------HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEE
Confidence            4666789999999999999984 699999999975432      2347999999999999999999996532      47


Q ss_pred             EEEEEecCCCCH
Q 040888          479 ILIYDYYRNGSL  490 (495)
Q Consensus       479 ~lv~ey~~~GsL  490 (495)
                      ++|||||++|.+
T Consensus        95 ~lv~Ey~~~~~~  106 (350)
T d1q5ka_          95 NLVLDYVPETVY  106 (350)
T ss_dssp             EEEEECCSEEHH
T ss_pred             EEEEeccCCccH
Confidence            899999987643

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=9e-12  Score=121.17  Aligned_cols=89  Identities=19%  Similarity=0.273  Sum_probs=69.4

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEEEEeCC----EEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQG----HNI  479 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~~~~~~----~~~  479 (495)
                      ..|...+.||+|+||+||+|+. .+|+.||||+++.... ....+.+.+|+++|.+++|||||++++++....    ..+
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~-~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~   86 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEH-QTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV   86 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTC-HHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             CCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcC-hHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceE
Confidence            4577889999999999999986 5799999999975432 223567899999999999999999999997643    234


Q ss_pred             EEEEecCCCCHhhhh
Q 040888          480 LIYDYYRNGSLHEFL  494 (495)
Q Consensus       480 lv~ey~~~GsL~~~L  494 (495)
                      ++++|+.+|+|.+++
T Consensus        87 ~l~~~~~~g~L~~~l  101 (345)
T d1pmea_          87 YLVTHLMGADLYKLL  101 (345)
T ss_dssp             EEEEECCCEEHHHHH
T ss_pred             EEEEeecCCchhhhh
Confidence            555677799999876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=9e-11  Score=107.73  Aligned_cols=153  Identities=14%  Similarity=0.077  Sum_probs=108.5

Q ss_pred             eEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcc-hhccCCCCCcEEEccc
Q 040888           72 TEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVP-YSISQMSELKYLNLGS  148 (495)
Q Consensus        72 ~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~L~~  148 (495)
                      +.++.++.+++ .+|..+.  +++++|||++|+++...+..+.  ++|++|+|++|.+...+| ..|.++++++.|.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            46777888877 6666553  4788999999998743333443  789999999998876554 4578888888888764


Q ss_pred             -CcCCCccchhhhCCCCCcEEEccCCcCCCcCcc-cccCCCCCCEEeccCCcccccc-cccCCcc--CcEEEeecCCCcc
Q 040888          149 -NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPR-SFASLSSLKKLYLQNNQFTGSI-NVLGKLP--LDELNVENNKFSG  223 (495)
Q Consensus       149 -N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~-~~~~l~~L~~L~l~~N~l~g~~-~~~~~~~--L~~l~l~~N~l~g  223 (495)
                       |++....+..|.++++|+.|++++|.++...+. .+..+..+..+..+++.+.... ..+..++  +..+++++|.++.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             678777778888889999999999988744322 3445566666667777776544 4444443  7788888888875


Q ss_pred             cCch
Q 040888          224 WVPE  227 (495)
Q Consensus       224 ~~p~  227 (495)
                      ..+.
T Consensus       168 i~~~  171 (242)
T d1xwdc1         168 IHNC  171 (242)
T ss_dssp             ECTT
T ss_pred             cccc
Confidence            4443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.14  E-value=3.4e-13  Score=120.58  Aligned_cols=121  Identities=24%  Similarity=0.323  Sum_probs=99.0

Q ss_pred             CCCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCC--CCCcEEECcCCcCCCCcchhccCCCCCcEEE
Q 040888           68 GSSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLP--PNLKHLDLSENQFSGTVPYSISQMSELKYLN  145 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  145 (495)
                      ..+++.|+|++|+++. ++ .+.++++|+.|+|++|.++ .+|....  ++|+.|++++|+++. ++ .+..+++|+.|+
T Consensus        47 L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~  121 (198)
T d1m9la_          47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHHHHHSSEEE
T ss_pred             ccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-cc-cccccccccccc
Confidence            4689999999999985 44 5889999999999999997 4553322  689999999999995 43 588899999999


Q ss_pred             cccCcCCCccc-hhhhCCCCCcEEEccCCcCCCcCccc----------ccCCCCCCEEe
Q 040888          146 LGSNQLNGQLS-DMFQKNEKLETLDLSKNQLTGELPRS----------FASLSSLKKLY  193 (495)
Q Consensus       146 L~~N~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~p~~----------~~~l~~L~~L~  193 (495)
                      |++|+|+.... ..+..+++|+.|+|++|.++...+..          +..+++|+.||
T Consensus       122 L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            99999986432 56889999999999999987554432          56788898886

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.7e-11  Score=117.05  Aligned_cols=88  Identities=18%  Similarity=0.366  Sum_probs=67.5

Q ss_pred             ccCCcccceeccCCceEEEEEEc-CC-CCEEEEEEecCcccccccHHHHHHHHHHHhcC---CCCCcceEEEEEEe----
Q 040888          404 TANFATGRLLGEGTIGRVYRAKY-PD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRI---RHTNIAELVGFCSE----  474 (495)
Q Consensus       404 t~~f~~~~~iG~G~~g~Vy~~~~-~~-g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l---~H~niv~l~g~~~~----  474 (495)
                      .++|...+.||+|+||+||+|+. .+ ++.||||+++...........+.+|+.+++.+   +|||||+++++|..    
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~   85 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   85 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECS
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccc
Confidence            46788899999999999999987 34 66899999975433222234566777776655   89999999999964    


Q ss_pred             -CCEEEEEEEecCCCCHh
Q 040888          475 -QGHNILIYDYYRNGSLH  491 (495)
Q Consensus       475 -~~~~~lv~ey~~~GsL~  491 (495)
                       ....++++||+++|++.
T Consensus        86 ~~~~~~~~~e~~~~~~~~  103 (305)
T d1blxa_          86 RETKLTLVFEHVDQDLTT  103 (305)
T ss_dssp             SEEEEEEEEECCSCBHHH
T ss_pred             cCceEEEEEEeccCCchh
Confidence             23578999999988664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.11  E-value=4.2e-10  Score=108.52  Aligned_cols=75  Identities=33%  Similarity=0.444  Sum_probs=47.2

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      ++++.|+|++|+|+ .+|..+   .+|+.|++++|.++ .++ .+++.|++|+|++|.++ .+|. ++.+++|+.|++++
T Consensus        58 ~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~-~lp~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~  129 (353)
T d1jl5a_          58 PHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALS-DLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDN  129 (353)
T ss_dssp             TTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCC-SCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCS
T ss_pred             CCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhh-hhccccccccccccccc-cccc-hhhhccceeecccc
Confidence            46777888888777 555443   45666677777665 333 24456777777777776 3443 45666666666666


Q ss_pred             CcC
Q 040888          149 NQL  151 (495)
Q Consensus       149 N~l  151 (495)
                      |.+
T Consensus       130 ~~~  132 (353)
T d1jl5a_         130 NSL  132 (353)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            654

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.03  E-value=1.3e-10  Score=110.19  Aligned_cols=85  Identities=22%  Similarity=0.379  Sum_probs=71.2

Q ss_pred             cCCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCC-CCcceEEEEEEeCCEEEEEE
Q 040888          405 ANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRH-TNIAELVGFCSEQGHNILIY  482 (495)
Q Consensus       405 ~~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H-~niv~l~g~~~~~~~~~lv~  482 (495)
                      ++|...+.||+|+||+||+|+. .+|+.||||.+.....    .+.+.+|++.+..++| +|++.+++++..+...++||
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~----~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vm   80 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD----APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVI   80 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT----SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccC----cHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEE
Confidence            4677889999999999999997 4689999999865432    2346778888888866 89999999999999999999


Q ss_pred             EecCCCCHhhhh
Q 040888          483 DYYRNGSLHEFL  494 (495)
Q Consensus       483 ey~~~GsL~~~L  494 (495)
                      ||+ +|+|.+++
T Consensus        81 e~~-~~~l~~~~   91 (293)
T d1csna_          81 DLL-GPSLEDLL   91 (293)
T ss_dssp             ECC-CCBHHHHH
T ss_pred             Eec-CCCHHHHH
Confidence            999 68988765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=8.4e-11  Score=110.91  Aligned_cols=150  Identities=25%  Similarity=0.331  Sum_probs=70.2

Q ss_pred             CEeEEEcCCCCCccccccccCCCCCCcEEECcCC-CCCCCCCCCC---CCCCcEEECcCC-cCCCC-cchhcc-CCCCCc
Q 040888           70 SVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNN-NLKDSIPYQL---PPNLKHLDLSEN-QFSGT-VPYSIS-QMSELK  142 (495)
Q Consensus        70 ~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N-~l~g~~p~~~---~~~L~~L~Ls~N-~l~g~-~p~~~~-~l~~L~  142 (495)
                      +++.|+|+++.+++..+..++.+++|++|+|+++ .++...-..+   .++|++|+|+++ .++.. +...+. ..++|+
T Consensus        72 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~  151 (284)
T d2astb2          72 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT  151 (284)
T ss_dssp             CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred             CcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccc
Confidence            4555555555554444444555555555555542 3321100000   145555555543 23211 111121 224555


Q ss_pred             EEEcccC--cCCCc-cchhhhCCCCCcEEEccCC-cCCCcCcccccCCCCCCEEeccCC-cccccc-cccCCcc-CcEEE
Q 040888          143 YLNLGSN--QLNGQ-LSDMFQKNEKLETLDLSKN-QLTGELPRSFASLSSLKKLYLQNN-QFTGSI-NVLGKLP-LDELN  215 (495)
Q Consensus       143 ~L~L~~N--~l~g~-~p~~~~~l~~L~~L~ls~N-~l~g~~p~~~~~l~~L~~L~l~~N-~l~g~~-~~~~~~~-L~~l~  215 (495)
                      .|++++.  .++.. +...+.++++|++|++++| .+++..+..+.++++|++|+|+++ .+++.. ..++.++ |+.|+
T Consensus       152 ~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~  231 (284)
T d2astb2         152 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ  231 (284)
T ss_dssp             EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             hhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEe
Confidence            5555542  23221 2233345666666666664 356555566666666666666663 454332 3344444 66666


Q ss_pred             eecC
Q 040888          216 VENN  219 (495)
Q Consensus       216 l~~N  219 (495)
                      ++++
T Consensus       232 l~~~  235 (284)
T d2astb2         232 VFGI  235 (284)
T ss_dssp             CTTS
T ss_pred             eeCC
Confidence            6655

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=5.5e-10  Score=105.99  Aligned_cols=83  Identities=16%  Similarity=0.246  Sum_probs=65.2

Q ss_pred             CCcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCCCCcceEEEE-EEeCCEEEEEEE
Q 040888          406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF-CSEQGHNILIYD  483 (495)
Q Consensus       406 ~f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H~niv~l~g~-~~~~~~~~lv~e  483 (495)
                      .|...+.||+|+||.||+|.. .+|+.||||.+.....    .+++..|++++++++|+|+|..++. ....+..++|||
T Consensus         8 rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~----~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme   83 (299)
T d1ckia_           8 RYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK----HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME   83 (299)
T ss_dssp             TEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT----SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             EEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc----CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEE
Confidence            477889999999999999987 5689999999865432    2357889999999988876665544 466788899999


Q ss_pred             ecCCCCHhhh
Q 040888          484 YYRNGSLHEF  493 (495)
Q Consensus       484 y~~~GsL~~~  493 (495)
                      |+. |++.+.
T Consensus        84 ~~~-~~l~~~   92 (299)
T d1ckia_          84 LLG-PSLEDL   92 (299)
T ss_dssp             CCC-CBHHHH
T ss_pred             EcC-Cchhhh
Confidence            995 556543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.85  E-value=1.5e-08  Score=97.18  Aligned_cols=138  Identities=29%  Similarity=0.409  Sum_probs=101.3

Q ss_pred             CCEeEEEcCCCCCccccccccCCCCCCcEEECcCCCCCCCCCCCCCCCCcEEECcCCcCCCCcchhccCCCCCcEEEccc
Q 040888           69 SSVTEIKLSGLGLNGQLGYQLTNLKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYLNLGS  148 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  148 (495)
                      .+++.|+|++++|+. +|+.   +++|++|+|++|+|+ .+|.. ..+|+.|++++|+++ .++. +  .+.|++|+|++
T Consensus        38 ~~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~-~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL-PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC-CTTCCEEECCSSCCS-CCCS-C--CTTCCEEECCS
T ss_pred             cCCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc-hhhhhhhhhhhcccc-hhhh-h--ccccccccccc
Confidence            468899999999974 6753   568999999999998 67754 468999999999988 3442 1  24699999999


Q ss_pred             CcCCCccchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCcccccccccCCcc-CcEEEeecCCCcc
Q 040888          149 NQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSG  223 (495)
Q Consensus       149 N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~~~~~~~~-L~~l~l~~N~l~g  223 (495)
                      |.++. +|. ++.+++|+.|++++|.++.. |..   ...+..+.+..+..... ..+..++ ++.+++++|.+..
T Consensus       108 n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~-~~~---~~~l~~l~~~~~~~~~~-~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         108 NQLEK-LPE-LQNSSFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEEL-PELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             SCCSS-CCC-CTTCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCSS
T ss_pred             ccccc-ccc-hhhhccceeecccccccccc-ccc---cccccchhhcccccccc-ccccccccceecccccccccc
Confidence            99984 554 57889999999999998744 332   34566777766655432 2334444 7788888887654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.84  E-value=1.5e-10  Score=112.12  Aligned_cols=155  Identities=18%  Similarity=0.224  Sum_probs=93.1

Q ss_pred             CCEeEEEcCCCCCccc----cccccCCCCCCcEEECcCCCCCCCCCC---------------CCCCCCcEEECcCCcCCC
Q 040888           69 SSVTEIKLSGLGLNGQ----LGYQLTNLKSVSYLDVSNNNLKDSIPY---------------QLPPNLKHLDLSENQFSG  129 (495)
Q Consensus        69 ~~v~~l~L~~n~l~g~----~~~~~~~l~~L~~L~Ls~N~l~g~~p~---------------~~~~~L~~L~Ls~N~l~g  129 (495)
                      .+++.|+|++|.++..    +...+...++|+.|+|++|.+...-..               ...+.|+.|++++|+++.
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccc
Confidence            4577777777776653    334445567777777777765421000               011467777777777653


Q ss_pred             C----cchhccCCCCCcEEEcccCcCCCc-----cchhhhCCCCCcEEEccCCcCCCc----CcccccCCCCCCEEeccC
Q 040888          130 T----VPYSISQMSELKYLNLGSNQLNGQ-----LSDMFQKNEKLETLDLSKNQLTGE----LPRSFASLSSLKKLYLQN  196 (495)
Q Consensus       130 ~----~p~~~~~l~~L~~L~L~~N~l~g~-----~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~  196 (495)
                      .    +...+..+..|+.|+|++|+++..     +...+..+++|+.|+|++|.++..    +...+..+++|++|+|++
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~  252 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  252 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             cccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhc
Confidence            2    233345567777777777777532     233455667777777777777532    334556677777777777


Q ss_pred             Ccccccc-----ccc---CCccCcEEEeecCCCcc
Q 040888          197 NQFTGSI-----NVL---GKLPLDELNVENNKFSG  223 (495)
Q Consensus       197 N~l~g~~-----~~~---~~~~L~~l~l~~N~l~g  223 (495)
                      |.+++.-     ..+   ....|++|++++|.++.
T Consensus       253 n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             CccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            7776431     122   22337777777777654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=5.9e-10  Score=104.94  Aligned_cols=159  Identities=18%  Similarity=0.298  Sum_probs=112.2

Q ss_pred             CCEeEEEcCCC-CCccc-cccccCCCCCCcEEECcCC-CCCCC-CC---CCCCCCCcEEECcCC--cCCCC-cchhccCC
Q 040888           69 SSVTEIKLSGL-GLNGQ-LGYQLTNLKSVSYLDVSNN-NLKDS-IP---YQLPPNLKHLDLSEN--QFSGT-VPYSISQM  138 (495)
Q Consensus        69 ~~v~~l~L~~n-~l~g~-~~~~~~~l~~L~~L~Ls~N-~l~g~-~p---~~~~~~L~~L~Ls~N--~l~g~-~p~~~~~l  138 (495)
                      ++++.|+|+++ +++.. +..-..++++|++|+|+++ .++.. +.   ....++|+.|++++.  .++.. +.....++
T Consensus        95 ~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~  174 (284)
T d2astb2          95 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC  174 (284)
T ss_dssp             TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC
T ss_pred             CCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccc
Confidence            68999999995 56642 2333467899999999985 45421 11   122378999999974  45532 33445678


Q ss_pred             CCCcEEEcccC-cCCCccchhhhCCCCCcEEEccC-CcCCCcCcccccCCCCCCEEeccCCcccc-cccccCCccCcEEE
Q 040888          139 SELKYLNLGSN-QLNGQLSDMFQKNEKLETLDLSK-NQLTGELPRSFASLSSLKKLYLQNNQFTG-SINVLGKLPLDELN  215 (495)
Q Consensus       139 ~~L~~L~L~~N-~l~g~~p~~~~~l~~L~~L~ls~-N~l~g~~p~~~~~l~~L~~L~l~~N~l~g-~~~~~~~~~L~~l~  215 (495)
                      ++|+.|+|++| .+++.....+..+++|++|+|++ +.+++.....++++++|+.|+++++ ++. .+..+.. .+..|.
T Consensus       175 ~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~-~lp~L~  252 (284)
T d2astb2         175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE-ALPHLQ  252 (284)
T ss_dssp             TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHH-HSTTSE
T ss_pred             ccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHH-hCcccc
Confidence            99999999986 58888888899999999999999 5788877778999999999999987 332 2221110 144455


Q ss_pred             eecCCCcccCchhh
Q 040888          216 VENNKFSGWVPEEL  229 (495)
Q Consensus       216 l~~N~l~g~~p~~l  229 (495)
                      +..+.+++..++.+
T Consensus       253 i~~~~ls~~~~~~~  266 (284)
T d2astb2         253 INCSHFTTIARPTI  266 (284)
T ss_dssp             ESCCCSCCTTCSSC
T ss_pred             ccCccCCCCCCCcc
Confidence            66777776544433

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.67  E-value=3.8e-09  Score=102.06  Aligned_cols=86  Identities=30%  Similarity=0.407  Sum_probs=40.4

Q ss_pred             CCCCcEEEcccCcCCCc----cchhhhCCCCCcEEEccCCcCCCc-----CcccccCCCCCCEEeccCCccccc----c-
Q 040888          138 MSELKYLNLGSNQLNGQ----LSDMFQKNEKLETLDLSKNQLTGE-----LPRSFASLSSLKKLYLQNNQFTGS----I-  203 (495)
Q Consensus       138 l~~L~~L~L~~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~-----~p~~~~~l~~L~~L~l~~N~l~g~----~-  203 (495)
                      .+.|+.|++++|+++..    +...+.....|+.|+|++|.++..     +...+..+++|+.|+|++|.++..    + 
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            44555555555555421    223334455555555555555421     222344455555566655555421    1 


Q ss_pred             cccCCcc-CcEEEeecCCCcc
Q 040888          204 NVLGKLP-LDELNVENNKFSG  223 (495)
Q Consensus       204 ~~~~~~~-L~~l~l~~N~l~g  223 (495)
                      ..+...+ |+.|++++|.+++
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCH
T ss_pred             ccccccccchhhhhhcCccCc
Confidence            1222222 5555565555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=7.5e-10  Score=110.53  Aligned_cols=162  Identities=19%  Similarity=0.197  Sum_probs=93.6

Q ss_pred             CEeEEEcCCCCCccc----cccccCCCCCCcEEECcCCCCCCCCC-------CCCCCCCcEEECcCCcCCCCcch----h
Q 040888           70 SVTEIKLSGLGLNGQ----LGYQLTNLKSVSYLDVSNNNLKDSIP-------YQLPPNLKHLDLSENQFSGTVPY----S  134 (495)
Q Consensus        70 ~v~~l~L~~n~l~g~----~~~~~~~l~~L~~L~Ls~N~l~g~~p-------~~~~~~L~~L~Ls~N~l~g~~p~----~  134 (495)
                      .++.+++++|.+...    ....+...+.++.+++++|.+++...       ......|+.+++++|.++.....    .
T Consensus       256 ~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~  335 (460)
T d1z7xw1         256 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV  335 (460)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccc
Confidence            466666666666533    22334456667777777776642111       01124677777777777654322    2


Q ss_pred             ccCCCCCcEEEcccCcCCCc----cchhhh-CCCCCcEEEccCCcCCCc----CcccccCCCCCCEEeccCCcccccc--
Q 040888          135 ISQMSELKYLNLGSNQLNGQ----LSDMFQ-KNEKLETLDLSKNQLTGE----LPRSFASLSSLKKLYLQNNQFTGSI--  203 (495)
Q Consensus       135 ~~~l~~L~~L~L~~N~l~g~----~p~~~~-~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~g~~--  203 (495)
                      +....+|++|+|++|+|+..    ++..+. ..+.|++|+|++|+|+..    ++..+..+++|++|+|++|+|+...  
T Consensus       336 ~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~  415 (460)
T d1z7xw1         336 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL  415 (460)
T ss_dssp             HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHH
T ss_pred             cccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHH
Confidence            33456777777777777542    233332 345677777777777642    4445556677777777777776422  


Q ss_pred             ---cccC-Cc-cCcEEEeecCCCcccCchhhhh
Q 040888          204 ---NVLG-KL-PLDELNVENNKFSGWVPEELKD  231 (495)
Q Consensus       204 ---~~~~-~~-~L~~l~l~~N~l~g~~p~~l~~  231 (495)
                         ..+. .. .|+.|++.+|.+....+..+..
T Consensus       416 ~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~  448 (460)
T d1z7xw1         416 QLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA  448 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHhCCCccCEEECCCCCCCHHHHHHHHH
Confidence               1222 11 2777777777776655554443

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.50  E-value=7.4e-08  Score=84.50  Aligned_cols=80  Identities=15%  Similarity=0.198  Sum_probs=59.1

Q ss_pred             ccceeccCCceEEEEEEcCCCCEEEEEEecCcccc----------------cccHHHHHHHHHHHhcCCCCCcceEEEEE
Q 040888          409 TGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQ----------------RANSESFSEIVQNISRIRHTNIAELVGFC  472 (495)
Q Consensus       409 ~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~----------------~~~~~~f~~e~~~l~~l~H~niv~l~g~~  472 (495)
                      ..+.||+|+||.||+|+..+|+.||||.++.....                ......+.+|.+.+.+++|.+++..+++.
T Consensus         4 vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~   83 (191)
T d1zara2           4 IGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWE   83 (191)
T ss_dssp             EEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEE
T ss_pred             hCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEec
Confidence            46899999999999999888999999987643110                00123355788899999999999877553


Q ss_pred             EeCCEEEEEEEecCCCCHhh
Q 040888          473 SEQGHNILIYDYYRNGSLHE  492 (495)
Q Consensus       473 ~~~~~~~lv~ey~~~GsL~~  492 (495)
                        .  .+++|||++++.+.+
T Consensus        84 --~--~~lvme~~~~~~~~~   99 (191)
T d1zara2          84 --G--NAVLMELIDAKELYR   99 (191)
T ss_dssp             --T--TEEEEECCCCEEGGG
T ss_pred             --C--CEEEEEeeccccccc
Confidence              2  268999998866543

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.38  E-value=1.7e-07  Score=90.73  Aligned_cols=80  Identities=18%  Similarity=0.258  Sum_probs=62.7

Q ss_pred             CcccceeccCCceEEEEEEc-CCCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-----------CCCcceEEEEEEe
Q 040888          407 FATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-----------HTNIAELVGFCSE  474 (495)
Q Consensus       407 f~~~~~iG~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-----------H~niv~l~g~~~~  474 (495)
                      |...+.||+|+||+||+|+. .+|+.||||+++....   ..+.+.+|++++.+++           |+|||++++++..
T Consensus        15 Y~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~---~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~   91 (362)
T d1q8ya_          15 YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKV---YTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   91 (362)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHH---HHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             EEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEecccc---chHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeee
Confidence            77789999999999999997 5799999999976432   2456788998888775           5789999998864


Q ss_pred             --CCEEEEEEEecCCCC
Q 040888          475 --QGHNILIYDYYRNGS  489 (495)
Q Consensus       475 --~~~~~lv~ey~~~Gs  489 (495)
                        ....+++++++..+.
T Consensus        92 ~~~~~~~~~~~~~~~~~  108 (362)
T d1q8ya_          92 KGPNGVHVVMVFEVLGE  108 (362)
T ss_dssp             EETTEEEEEEEECCCCE
T ss_pred             ccccceeeeeeeccccc
Confidence              356677777765544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=4.5e-08  Score=97.23  Aligned_cols=136  Identities=21%  Similarity=0.199  Sum_probs=100.4

Q ss_pred             CCCEeEEEcCCCCCcccccc----cc-CCCCCCcEEECcCCCCCCCCCCCCC------CCCcEEECcCCcCCCC----cc
Q 040888           68 GSSVTEIKLSGLGLNGQLGY----QL-TNLKSVSYLDVSNNNLKDSIPYQLP------PNLKHLDLSENQFSGT----VP  132 (495)
Q Consensus        68 ~~~v~~l~L~~n~l~g~~~~----~~-~~l~~L~~L~Ls~N~l~g~~p~~~~------~~L~~L~Ls~N~l~g~----~p  132 (495)
                      ...+..+++++|.++.....    .+ .....|+.+++++|.++..-...+.      ++|++|||++|+|+..    ++
T Consensus       282 ~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~  361 (460)
T d1z7xw1         282 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC  361 (460)
T ss_dssp             CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred             cccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhh
Confidence            35789999999998753322    22 2446899999999998754222221      6899999999999753    34


Q ss_pred             hhcc-CCCCCcEEEcccCcCCCc----cchhhhCCCCCcEEEccCCcCCCcCcccc----c-CCCCCCEEeccCCccccc
Q 040888          133 YSIS-QMSELKYLNLGSNQLNGQ----LSDMFQKNEKLETLDLSKNQLTGELPRSF----A-SLSSLKKLYLQNNQFTGS  202 (495)
Q Consensus       133 ~~~~-~l~~L~~L~L~~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~~p~~~----~-~l~~L~~L~l~~N~l~g~  202 (495)
                      ..+. ..+.|++|+|++|.|+..    +++.+..+++|++|+|++|+|+......+    . +...|+.|++.+|.+...
T Consensus       362 ~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             hhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence            4443 467899999999999853    56677788999999999999986433333    2 445799999999999854


Q ss_pred             c
Q 040888          203 I  203 (495)
Q Consensus       203 ~  203 (495)
                      .
T Consensus       442 ~  442 (460)
T d1z7xw1         442 M  442 (460)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.7e-08  Score=84.94  Aligned_cols=64  Identities=33%  Similarity=0.426  Sum_probs=26.8

Q ss_pred             CCCCCcEEEcccCcCCCc--cchhhhCCCCCcEEEccCCcCCCcCcccccCCCCCCEEeccCCccc
Q 040888          137 QMSELKYLNLGSNQLNGQ--LSDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT  200 (495)
Q Consensus       137 ~l~~L~~L~L~~N~l~g~--~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~  200 (495)
                      .+++|++|+|++|+|+..  ++..+..+++|+.|+|++|.++...+-.+.....|+.|++++|.++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            344444445555544432  2233444444444444444444222212222233444444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.9e-07  Score=79.51  Aligned_cols=79  Identities=29%  Similarity=0.325  Sum_probs=51.2

Q ss_pred             CCCcEEECcCCcCCCC--cchhccCCCCCcEEEcccCcCCCccchhhhCCCCCcEEEccCCcCCCcCccc-------ccC
Q 040888          115 PNLKHLDLSENQFSGT--VPYSISQMSELKYLNLGSNQLNGQLSDMFQKNEKLETLDLSKNQLTGELPRS-------FAS  185 (495)
Q Consensus       115 ~~L~~L~Ls~N~l~g~--~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-------~~~  185 (495)
                      ++|++|+|++|+|+..  ++..+..+++|+.|+|++|.++...+-.+....+|+.|++++|.++......       +..
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~  144 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER  144 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTT
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHH
Confidence            4566666666666643  3345667778888888888877544434444556788888888887654422       456


Q ss_pred             CCCCCEEe
Q 040888          186 LSSLKKLY  193 (495)
Q Consensus       186 l~~L~~L~  193 (495)
                      +++|+.||
T Consensus       145 ~P~L~~LD  152 (162)
T d1koha1         145 FPKLLRLD  152 (162)
T ss_dssp             STTCCEET
T ss_pred             CCCCCEEC
Confidence            77888775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.88  E-value=3.2e-06  Score=72.00  Aligned_cols=38  Identities=13%  Similarity=0.297  Sum_probs=18.8

Q ss_pred             CCEeEEEcCCC-CCccc----cccccCCCCCCcEEECcCCCCC
Q 040888           69 SSVTEIKLSGL-GLNGQ----LGYQLTNLKSVSYLDVSNNNLK  106 (495)
Q Consensus        69 ~~v~~l~L~~n-~l~g~----~~~~~~~l~~L~~L~Ls~N~l~  106 (495)
                      +++++|+|+++ .++..    +...+...+.|+.|+|++|.+.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            35666666543 34321    2234445555555555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.77  E-value=3.3e-06  Score=71.90  Aligned_cols=65  Identities=20%  Similarity=0.291  Sum_probs=32.0

Q ss_pred             ccCCCCCcEEEcccCcCCC----ccchhhhCCCCCcEEEccCCcCCCc----CcccccCCCCCCEEeccCCcc
Q 040888          135 ISQMSELKYLNLGSNQLNG----QLSDMFQKNEKLETLDLSKNQLTGE----LPRSFASLSSLKKLYLQNNQF  199 (495)
Q Consensus       135 ~~~l~~L~~L~L~~N~l~g----~~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l  199 (495)
                      +...++|+.|+|++|.++.    .+...+...+.|+.|+|++|.++..    +-..+...++|+.|+|++|.+
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            3444555555555555542    1223344445566666666655532    122344445566666666544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.08  E-value=2.9e-05  Score=65.69  Aligned_cols=14  Identities=29%  Similarity=0.567  Sum_probs=5.8

Q ss_pred             CCCCcEEEccCCcC
Q 040888          162 NEKLETLDLSKNQL  175 (495)
Q Consensus       162 l~~L~~L~ls~N~l  175 (495)
                      ...|+.|++++|.+
T Consensus        73 ~~~l~~l~l~~~~~   86 (166)
T d1io0a_          73 NNTLKSLNVESNFI   86 (166)
T ss_dssp             CSSCCEEECCSSCC
T ss_pred             cccchhhhhccccc
Confidence            33444444444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.02  E-value=6.2e-05  Score=63.52  Aligned_cols=85  Identities=21%  Similarity=0.272  Sum_probs=44.7

Q ss_pred             CCCcEEECcCCcCCCC----cchhccCCCCCcEEEcccCcCCCc----cchhhhCCCCCcEEEc--cCCcCCC----cCc
Q 040888          115 PNLKHLDLSENQFSGT----VPYSISQMSELKYLNLGSNQLNGQ----LSDMFQKNEKLETLDL--SKNQLTG----ELP  180 (495)
Q Consensus       115 ~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~L~~N~l~g~----~p~~~~~l~~L~~L~l--s~N~l~g----~~p  180 (495)
                      ++|+.|+|++|.++..    +-..+...++|+.|++++|.++..    +...+...++|+.++|  ++|.+..    .+.
T Consensus        46 ~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La  125 (166)
T d1io0a_          46 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA  125 (166)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             CccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHH
Confidence            3455555555555422    222334456666666666666432    2234555566665444  4555543    233


Q ss_pred             ccccCCCCCCEEeccCCcc
Q 040888          181 RSFASLSSLKKLYLQNNQF  199 (495)
Q Consensus       181 ~~~~~l~~L~~L~l~~N~l  199 (495)
                      ..+...++|+.|+++.+..
T Consensus       126 ~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         126 NMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCCCcCEEeCcCCCC
Confidence            4455667777777766654

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.67  E-value=0.42  Score=41.68  Aligned_cols=92  Identities=12%  Similarity=0.086  Sum_probs=59.3

Q ss_pred             HHHHHhccCCcccceeccCCceEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCC-CCCcceEEEEEEeCC
Q 040888          398 ADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIR-HTNIAELVGFCSEQG  476 (495)
Q Consensus       398 ~~~~~~t~~f~~~~~iG~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~-H~niv~l~g~~~~~~  476 (495)
                      .++..-.+.|...+..+-++...||+... +++.+.+|+.......  ....+.+|...+..++ +--+.+++.++..++
T Consensus         7 ~~l~~~~~~~~~~~~~~G~s~~~v~rv~~-~~~~~vlk~~~~~~~~--~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~   83 (263)
T d1j7la_           7 PELKKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKG--TTYDVEREKDMMLWLEGKLPVPKVLHFERHDG   83 (263)
T ss_dssp             HHHHHHHTTSEEEECSCCCSSSEEEEEEC-SSCEEEEEEECGGGTT--STTCHHHHHHHHHHHTTTSCCCCEEEEEEETT
T ss_pred             HHHHHhhhceEEEEcCCCCCCCcEEEEEe-CCCeEEEEEcCCCccc--chhhHHHHHHHHHHHhccCCCCcEEEEEecCC
Confidence            34555555665544433344568998875 4556678877543221  1234667777776553 333567888888888


Q ss_pred             EEEEEEEecCCCCHhh
Q 040888          477 HNILIYDYYRNGSLHE  492 (495)
Q Consensus       477 ~~~lv~ey~~~GsL~~  492 (495)
                      ..++||+++++..+.+
T Consensus        84 ~~~lv~~~l~G~~~~~   99 (263)
T d1j7la_          84 WSNLLMSEADGVLCSE   99 (263)
T ss_dssp             EEEEEEECCSSEEHHH
T ss_pred             ceEEEEEecccccccc
Confidence            9999999999877644

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=88.39  E-value=0.3  Score=42.50  Aligned_cols=75  Identities=19%  Similarity=0.193  Sum_probs=51.5

Q ss_pred             eeccCCc-eEEEEEEcCCCCEEEEEEecCcccccccHHHHHHHHHHHhcCCC--CCcceEEEEEEeCCEEEEEEEecCCC
Q 040888          412 LLGEGTI-GRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRH--TNIAELVGFCSEQGHNILIYDYYRNG  488 (495)
Q Consensus       412 ~iG~G~~-g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~f~~e~~~l~~l~H--~niv~l~g~~~~~~~~~lv~ey~~~G  488 (495)
                      .+..|.. +.||+...+++..+.+|.-.....     ..+.+|.+.+..+..  --+.++++++..++..++||||+++-
T Consensus        17 ~~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~~-----~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~   91 (255)
T d1nd4a_          17 QQTIGCSDAAVFRLSAQGRPVLFVKTDLSGAL-----NELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQ   91 (255)
T ss_dssp             ECSCTTSSCEEEEEECTTSCCEEEEEECSCTT-----SCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSE
T ss_pred             EcCCcccCCeEEEEEeCCCCEEEEEeCCccCH-----hHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecc
Confidence            3444543 678999988888888887654321     235566666665533  33556788888888889999999876


Q ss_pred             CHh
Q 040888          489 SLH  491 (495)
Q Consensus       489 sL~  491 (495)
                      ++.
T Consensus        92 ~~~   94 (255)
T d1nd4a_          92 DLL   94 (255)
T ss_dssp             ETT
T ss_pred             ccc
Confidence            654