Citrus Sinensis ID: 040904

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90--
Protein Sequence
MAIQEIFKQCSSFGKKCSCDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLEKAAEEYGYKHDLGIILPCDERVFRQLTSWLI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccccccccccccccccccEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccEEEEEEHHcccHHHHHHHHHHHHHHccccccccEccccHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MAIQEIFKQCSsfgkkcscdqdghpndvpkghcvvyvgenrsryiipitwlnhpkFKNLLEKAAEEygykhdlgiilpcDERVFRQLTSWLI
Flexible Loop (DISEMBL)
MAIQEIFKQCSSFGKKCSCDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLEKAAEEYGYKHDLGIILPCDERVFRQLTSWLI
Low Complexity Region (SEG)
MAIQEIFKQCSSFGKKCSCDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLEKAAEEYGYKHDLGIILPCDERVFRQLTSWLI
Disordered region (IsUnstruct)
*********C*SFGKKCSC*******DVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLEKAAEEYGYKHDLGIILPCDERVFRQLTSWL*
Disordered Region (DISOPRED)
*AIQE*************************GHCVVYVGENRSRYIIPITWLNHPKFKNLLEKAAEEYGYKHDLGIILPCDERVFRQLTSWLI
Disordered Region (DISEMBL)
MAIQEIFKQCSSFGKKCSCDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLEKAAEEYGYKHDLGIILPCDERVFRQLTSWLI
Disordered Region (DISPRO)
MAIQEIFKQCSSFGK*********PNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLEKAAEEYGYKHDLGIILPCDERVFRQLTSWLI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAIQEIFKQCSSFGKKCSCDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLEKAAEEYGYKHDLGIILPCDERVFRQLTSWLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	92	2.2.26 [Sep-21-2011]
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.706	0.706	0.5	1e-14
P33083	90	Auxin-induced protein 6B	no	no	0.706	0.722	0.5	1e-14
P33081	82	Auxin-induced protein 15A	no	no	0.706	0.792	0.5	2e-14
P33082	82	Auxin-induced protein X15	no	no	0.706	0.792	0.469	3e-14
P33080	92	Auxin-induced protein X10	no	no	0.706	0.706	0.484	1e-13
P33079	93	Auxin-induced protein 10A	no	no	0.706	0.698	0.469	3e-13

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 48/66 (72%), Gaps = 1/66 (1%)

Query: 27 DVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLEKAAEEYGYKHDL-GIILPCDERVFR 85
          D PKG+  VYVGEN  R++IP++ LN P F++LL +A EE+GY H + G+ +PC E +F+
Sbjct: 24 DAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQ 83

Query: 86 QLTSWL 91
           +TS L
Sbjct: 84 HITSCL 89

Vigna radiata var. radiata (taxid: 3916)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 49/66 (74%), Gaps = 1/66 (1%)

Query: 27 DVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLEKAAEEYGYKH-DLGIILPCDERVFR 85
          DV KG+  VYVGE   R++IP+++LN P F++LL +A EE+GY H + G+ +PC E VF+
Sbjct: 24 DVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQ 83

Query: 86 QLTSWL 91
           +TS+L
Sbjct: 84 HITSFL 89

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 48/66 (72%), Gaps = 1/66 (1%)

Query: 27 DVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLEKAAEEYGYKHDL-GIILPCDERVFR 85
          D PKG+  VYVGE   R++IP+++LN P F++LL +A EE+GY H + G+ +PC E VF+
Sbjct: 16 DAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQ 75

Query: 86 QLTSWL 91
           +TS L
Sbjct: 76 CITSCL 81

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 48/66 (72%), Gaps = 1/66 (1%)

Query: 27 DVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLEKAAEEYGYKHDL-GIILPCDERVFR 85
          D PKG+  VYVGE   R++IP++++N P F++LL +A EE+GY H + G+ +PC E VF+
Sbjct: 16 DAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQ 75

Query: 86 QLTSWL 91
          ++T  L
Sbjct: 76 RITCCL 81

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 48/66 (72%), Gaps = 1/66 (1%)

Query: 27 DVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLEKAAEEYGYKHDL-GIILPCDERVFR 85
          +VPKG+ VVYVG+   R++IP+++LN P F++LL +A EE+GY H + G+ +PC E  F 
Sbjct: 24 EVPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEFL 83

Query: 86 QLTSWL 91
           +TS L
Sbjct: 84 TVTSHL 89

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 27 DVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLEKAAEEYGYKHDL-GIILPCDERVFR 85
          DVPKG+  VYVG+   R+ IP+++LN P F+ LL +A EE+GY H + G+ +PC E  F 
Sbjct: 25 DVPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEFL 84

Query: 86 QLTSWL 91
           +T+ L
Sbjct: 85 NVTAHL 90

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
224097158	104	SAUR family protein [Populus trichocarpa	0.978	0.865	0.622	4e-29
449434172	107	PREDICTED: auxin-induced protein 15A-lik	0.978	0.841	0.604	2e-28
356531583	104	PREDICTED: auxin-induced protein 15A-lik	0.978	0.865	0.611	2e-28
357483723	104	Auxin-induced protein 6B [Medicago trunc	0.978	0.865	0.588	6e-28
224080516	104	SAUR family protein [Populus trichocarpa	0.978	0.865	0.6	1e-27
356538277	104	PREDICTED: auxin-induced protein 15A-lik	0.989	0.875	0.571	1e-27
225431165	104	PREDICTED: auxin-induced protein 15A-lik	0.978	0.865	0.588	2e-27
351725307	105	uncharacterized protein LOC100500265 [Gl	0.989	0.866	0.593	2e-27
225427810	104	PREDICTED: auxin-induced protein 15A [Vi	0.978	0.865	0.6	3e-27
224103303	104	SAUR family protein [Populus trichocarpa	0.978	0.865	0.6	3e-27

>gi|224097158|ref|XP_002310856.1| SAUR family protein [Populus trichocarpa] gi|222853759|gb|EEE91306.1| SAUR family protein [Populus trichocarpa]

 Score =  131 bits (330), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 56/90 (62%), Positives = 75/90 (83%)

Query: 2   AIQEIFKQCSSFGKKCSCDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLE 61
           A+++I K+CSSFGKK   DQDG P+DVPKGH  VYVGENRSRYIIPI+WL+ P+F++LL+
Sbjct: 14  ALKQIVKRCSSFGKKNGYDQDGLPDDVPKGHFAVYVGENRSRYIIPISWLDRPEFQSLLQ 73

Query: 62  KAAEEYGYKHDLGIILPCDERVFRQLTSWL 91
           +A EE+G+KH +G+ +PC+E VFR LT  +
Sbjct: 74  RAEEEFGFKHGMGLTIPCEEVVFRSLTEMI 103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434172|ref|XP_004134870.1| PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 75/91 (82%), Gaps = 1/91 (1%)

Query: 2   AIQEIFKQCSSFGKKCS-CDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLL 60
           + + I K+CSSFGK+ + C++DG P DVPKGH  VYVGENRSRYI+PI+WL HP+F++LL
Sbjct: 14  SFRHILKRCSSFGKRTNGCNEDGLPEDVPKGHFAVYVGENRSRYIVPISWLAHPQFQSLL 73

Query: 61  EKAAEEYGYKHDLGIILPCDERVFRQLTSWL 91
           ++A EE+G+ HD+GI +PC+E VFR LTS +
Sbjct: 74  QRAEEEFGFNHDMGITIPCEEVVFRSLTSMI 104

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531583|ref|XP_003534356.1| PREDICTED: auxin-induced protein 15A-like [Glycine max]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 72/90 (80%)

Query: 2   AIQEIFKQCSSFGKKCSCDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLE 61
            +++I K+CSS GKK   D DGHP DVPKGH  VYVGENR+RYI+PI++L HP+F++LL 
Sbjct: 14  VLKQILKRCSSLGKKNGYDDDGHPVDVPKGHFAVYVGENRTRYIVPISFLAHPQFQSLLR 73

Query: 62  KAAEEYGYKHDLGIILPCDERVFRQLTSWL 91
           +A EE+GY H++G+ +PCDE VFR LTS L
Sbjct: 74  QAEEEFGYDHEMGLTIPCDEDVFRSLTSSL 103

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483723|ref|XP_003612148.1| Auxin-induced protein 6B [Medicago truncatula] gi|355513483|gb|AES95106.1| Auxin-induced protein 6B [Medicago truncatula] gi|388510904|gb|AFK43518.1| unknown [Medicago truncatula]

 Score =  127 bits (320), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 74/90 (82%)

Query: 2   AIQEIFKQCSSFGKKCSCDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLE 61
            I++I K+CSSFGK+ S +++G P DVPKGH VVYVGENR+RYIIPI+WL HP+F++LL+
Sbjct: 14  VIKQIVKRCSSFGKRQSYNEEGLPEDVPKGHFVVYVGENRTRYIIPISWLAHPQFQSLLQ 73

Query: 62  KAAEEYGYKHDLGIILPCDERVFRQLTSWL 91
           +A +E+G+ HD+G+ +PCDE  F  LTS +
Sbjct: 74  RAEDEFGFNHDMGLTIPCDEVFFESLTSMM 103

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080516|ref|XP_002306147.1| SAUR family protein [Populus trichocarpa] gi|222849111|gb|EEE86658.1| SAUR family protein [Populus trichocarpa]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 73/90 (81%)

Query: 2   AIQEIFKQCSSFGKKCSCDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLE 61
            +++I K+CSS GKK   D DG P DVPKGH  VYVGENRSRYI+PI++L+HP+F++LL+
Sbjct: 14  VLKQILKRCSSLGKKHGYDDDGLPLDVPKGHFAVYVGENRSRYIVPISFLSHPEFQSLLQ 73

Query: 62  KAAEEYGYKHDLGIILPCDERVFRQLTSWL 91
           +A EE+G+ HD+G+ +PC+E VFR LTS L
Sbjct: 74  RAEEEFGFDHDMGLTIPCEEVVFRSLTSML 103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538277|ref|XP_003537630.1| PREDICTED: auxin-induced protein 15A-like [Glycine max]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 52/91 (57%), Positives = 74/91 (81%)

Query: 1   MAIQEIFKQCSSFGKKCSCDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLL 60
           + +++I K+CSSFGKK + +++G P+DVPKGH  VYVGENR+RYIIPI+WL HP+F+ LL
Sbjct: 13  IVLKQIVKRCSSFGKKQTYNEEGLPDDVPKGHFAVYVGENRTRYIIPISWLAHPQFQILL 72

Query: 61  EKAAEEYGYKHDLGIILPCDERVFRQLTSWL 91
           ++A EE+G+ HD+G+ +PCDE  F  LTS +
Sbjct: 73  QRAEEEFGFNHDMGLTIPCDEVAFESLTSMM 103

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431165|ref|XP_002269183.1| PREDICTED: auxin-induced protein 15A-like [Vitis vinifera]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 72/90 (80%)

Query: 2   AIQEIFKQCSSFGKKCSCDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLE 61
           A+++I K+CSSFGKK   DQ   P+DVPKGH  VYVGENRSRYI+PI+WL HP+F+ LL+
Sbjct: 14  ALKQILKRCSSFGKKPGYDQGSLPDDVPKGHFAVYVGENRSRYIVPISWLAHPEFQGLLQ 73

Query: 62  KAAEEYGYKHDLGIILPCDERVFRQLTSWL 91
           +A EE+G+ HD+G+ +PC+E VF  LT+ +
Sbjct: 74  RAEEEFGFNHDMGLTIPCEEVVFLSLTAMI 103

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725307|ref|NP_001235552.1| uncharacterized protein LOC100500265 [Glycine max] gi|255629875|gb|ACU15288.1| unknown [Glycine max]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 71/91 (78%)

Query: 1   MAIQEIFKQCSSFGKKCSCDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLL 60
           + +++I K+CS  GKK   D DGHP DVPKGH  VYVGENR RYI+PI++L HP+F++LL
Sbjct: 14  VVLKQILKRCSGLGKKNGYDDDGHPVDVPKGHFAVYVGENRRRYIVPISFLAHPEFQSLL 73

Query: 61  EKAAEEYGYKHDLGIILPCDERVFRQLTSWL 91
            +A EE+GY H++G+ +PCDE VFR LTS L
Sbjct: 74  RQAEEEFGYDHEMGLTIPCDEVVFRSLTSSL 104

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427810|ref|XP_002270504.1| PREDICTED: auxin-induced protein 15A [Vitis vinifera] gi|147856535|emb|CAN82489.1| hypothetical protein VITISV_036184 [Vitis vinifera]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 73/90 (81%)

Query: 2   AIQEIFKQCSSFGKKCSCDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLE 61
            +++I K+CSS GKK   D+DG P DVPKGH  VYVGENRSRYI+PI++L+HP+F+ LL+
Sbjct: 14  VLKQILKRCSSLGKKNGYDEDGLPLDVPKGHFAVYVGENRSRYIVPISFLSHPEFQCLLQ 73

Query: 62  KAAEEYGYKHDLGIILPCDERVFRQLTSWL 91
           +A EE+G+ HD+G+ +PC+E VFR LTS L
Sbjct: 74  RAEEEFGFDHDMGLTIPCEEVVFRSLTSML 103

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103303|ref|XP_002313002.1| SAUR family protein [Populus trichocarpa] gi|118484681|gb|ABK94211.1| unknown [Populus trichocarpa] gi|222849410|gb|EEE86957.1| SAUR family protein [Populus trichocarpa] gi|407260775|gb|AFT92006.1| SAUR family protein [Populus alba x Populus tremula var. glandulosa] gi|407260799|gb|AFT92018.1| SAUR family protein [Populus alba x Populus tremula var. glandulosa]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 72/90 (80%)

Query: 2   AIQEIFKQCSSFGKKCSCDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLE 61
            +++I K+CSS GKK   D DG P DVPKGH  VYVGENRSRYI+PI++L+HP+F+ LL+
Sbjct: 14  VLKQILKRCSSLGKKHGYDDDGLPLDVPKGHFAVYVGENRSRYIVPISFLSHPEFQFLLQ 73

Query: 62  KAAEEYGYKHDLGIILPCDERVFRQLTSWL 91
           +A EE+G+ HD+G+ +PC+E VFR LTS L
Sbjct: 74  RAEEEFGFDHDMGLTIPCEEVVFRSLTSML 103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
TAIR|locus:2047117	104	AT2G21220 "AT2G21220" [Arabido	0.967	0.855	0.584	2.5e-26
TAIR|locus:2139589	107	AT4G34760 "AT4G34760" [Arabido	0.967	0.831	0.571	2.9e-25
TAIR|locus:2005709	108	AT1G75580 "AT1G75580" [Arabido	0.967	0.824	0.559	3.3e-24
TAIR|locus:2141786	105	AT4G38860 "AT4G38860" [Arabido	0.967	0.847	0.544	1.1e-23
TAIR|locus:2135144	104	SAUR9 "AT4G36110" [Arabidopsis	0.923	0.817	0.528	1e-22
TAIR|locus:2060928	112	AT2G18010 "AT2G18010" [Arabido	0.956	0.785	0.531	7e-22
TAIR|locus:2013074	117	AT1G19830 "AT1G19830" [Arabido	0.967	0.760	0.5	2.7e-20
TAIR|locus:2045086	108	AT2G16580 "AT2G16580" [Arabido	0.967	0.824	0.5	2.7e-20
TAIR|locus:2155016	99	AT5G66260 "AT5G66260" [Arabido	0.923	0.858	0.517	3.5e-20
TAIR|locus:2080983	106	AT3G51200 "AT3G51200" [Arabido	0.847	0.735	0.470	3.7e-16

TAIR|locus:2047117 AT2G21220 "AT2G21220" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 52/89 (58%), Positives = 70/89 (78%)

Query:     3 IQEIFKQCSSFGKKCSCDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLEK 62
             +++I K+CSS  K    D+DG P DVPKGH  VYVGE RSRYI+PI++L HPKFK+LL++
Sbjct:    15 LKQILKRCSSLAKNQCYDEDGLPVDVPKGHFPVYVGEKRSRYIVPISFLTHPKFKSLLQQ 74

Query:    63 AAEEYGYKHDLGIILPCDERVFRQLTSWL 91
             A EE+G+ HD+G+ +PC+E VFR LTS +
Sbjct:    75 AEEEFGFNHDMGLTIPCEEVVFRSLTSMI 103

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2139589 AT4G34760 "AT4G34760" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 52/91 (57%), Positives = 72/91 (79%)

Query:     3 IQEIFKQCSSFGKKCS--CDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLL 60
             +++I K+CSS GKK     D+D  P DVPKGH  VYVGENRSRYI+PI++L HP+F++LL
Sbjct:    16 LKQILKRCSSLGKKNGGGYDEDCLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLL 75

Query:    61 EKAAEEYGYKHDLGIILPCDERVFRQLTSWL 91
             ++A EE+G+ HD+G+ +PCDE VF+ LTS +
Sbjct:    76 QRAEEEFGFDHDMGLTIPCDELVFQTLTSMI 106

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2005709 AT1G75580 "AT1G75580" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 52/93 (55%), Positives = 72/93 (77%)

Query:     3 IQEIFKQCSSFGKKCSC----DQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKN 58
             I++I K+CSS GKK S     D++G P +VPKGH VVYVGENR RY++PI++L  P+F+ 
Sbjct:    15 IKQILKRCSSLGKKQSNVYGEDENGSPLNVPKGHFVVYVGENRVRYVVPISFLTRPEFQL 74

Query:    59 LLEKAAEEYGYKHDLGIILPCDERVFRQLTSWL 91
             LL++A EE+G+ HD+G+ +PC+E VFR LTS L
Sbjct:    75 LLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSML 107

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2141786 AT4G38860 "AT4G38860" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 49/90 (54%), Positives = 70/90 (77%)

Query:     3 IQEIFKQCSSFGKKCSCDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLEK 62
             +++I K+CSS GKK   D++G P DVPKGH  VYVGE R+RYI+PI++L HP+F  LL++
Sbjct:    15 LKQILKRCSSLGKKQCYDEEGLPLDVPKGHFPVYVGEKRTRYIVPISFLTHPEFLILLQQ 74

Query:    63 AAEEYGYKHDLG-IILPCDERVFRQLTSWL 91
             A EE+G++HD+G + +PC+E VF  LTS +
Sbjct:    75 AEEEFGFRHDMGGLTIPCEEVVFLSLTSMI 104

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2135144 SAUR9 "AT4G36110" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 47/89 (52%), Positives = 71/89 (79%)

Query:     2 AIQEIFKQCSSFGKKCSCDQDG-HPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLL 60
             ++++I K+CSS GKK   +Q   + NDVPKGH  VYVG++RSRY++PI+WL+H +F++LL
Sbjct:    16 SLKQILKRCSSLGKK---NQGNCYFNDVPKGHFPVYVGQHRSRYVVPISWLDHHEFQSLL 72

Query:    61 EKAAEEYGYKHDLGIILPCDERVFRQLTS 89
             + A EE+G++H++G+ +PCDE VFR L S
Sbjct:    73 QLAEEEFGFEHEMGLTIPCDEVVFRSLIS 101

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2060928 AT2G18010 "AT2G18010" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 50/94 (53%), Positives = 65/94 (69%)

Query:     2 AIQEIFKQCSSFGKK-----CSCDQ-DGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPK 55
             +I++I K+CSS  K      C  +Q D  P DVPKGH  VYVG NRSRYI+PI+WL+H +
Sbjct:    16 SIKQIVKRCSSLRKMKNVNGCYYNQEDDLPQDVPKGHFPVYVGPNRSRYIVPISWLHHSE 75

Query:    56 FKNLLEKAAEEYGYKHDLGIILPCDERVFRQLTS 89
             F+ LL  A EE+G+ HD+G+ +PCDE  FR L S
Sbjct:    76 FQTLLRLAEEEFGFDHDMGLTIPCDEVFFRSLIS 109

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013074 AT1G19830 "AT1G19830" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 49/98 (50%), Positives = 69/98 (70%)

Query:     3 IQEIFKQCSSFGKKCSCD-QDGH-------PNDVPKGHCVVYVGENRSRYIIPITWLNHP 54
             I++I K+CSS GKK S +  D H       P DVPKGH VVYVG NR RY++PI++L  P
Sbjct:    15 IKQILKRCSSLGKKQSSEYNDTHEHDGDSLPLDVPKGHFVVYVGGNRVRYVLPISFLTRP 74

Query:    55 KFKNLLEKAAEEYGYKHDLGIILPCDERVFRQL-TSWL 91
             +F+ LL++A EE+G+ H++G+ +PC+E  F+ L TS L
Sbjct:    75 EFQLLLQQAEEEFGFDHNMGLTIPCEEVAFKSLITSML 112

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2045086 AT2G16580 "AT2G16580" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 46/92 (50%), Positives = 65/92 (70%)

Query:     3 IQEIFKQCSSFGKKCS---CDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNL 59
             +++I K+CSS GKK      ++   P DVPKGH  VYVG NRSRYI+PI++L +  F+ L
Sbjct:    16 LRQILKRCSSLGKKNGGGGYEEVDLPLDVPKGHFPVYVGHNRSRYIVPISFLTNLDFQCL 75

Query:    60 LEKAAEEYGYKHDLGIILPCDERVFRQLTSWL 91
             L +A EE+G+ HD+G+ +PCDE  F+ LTS +
Sbjct:    76 LRRAEEEFGFDHDMGLTIPCDELFFQDLTSMI 107

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2155016 AT5G66260 "AT5G66260" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 45/87 (51%), Positives = 64/87 (73%)

Query:     3 IQEIFKQCSSFGKKCSCDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLEK 62
             ++++ K+CSS GKK S D +   N VPKGH VVYVG +RSR++IPI++L HP F+ LL++
Sbjct:    11 LKQMLKRCSSLGKKSSVDVNF--NGVPKGHFVVYVGHSRSRHVIPISFLTHPIFQMLLQQ 68

Query:    63 AAEEYGYKHDLGIILPCDERVFRQLTS 89
             + EE+G+  D G+ +PCDE  FR L S
Sbjct:    69 SEEEFGFFQDNGLTIPCDEHFFRALIS 95

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2080983 AT3G51200 "AT3G51200" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 40/85 (47%), Positives = 56/85 (65%)

Query:     4 QEIFKQCSSFGKKCSCDQDGHPNDVPK-GHCVVYVGENRSRYIIPITWLNHPKFKNLLEK 62
             Q + K+CSSF KK       +  DVPK G+  VYVG  R R++IPIT LNHP FK +L+K
Sbjct:    21 QMLMKRCSSFVKK------SNEEDVPKKGYFAVYVGHFRDRHVIPITSLNHPTFKMMLQK 74

Query:    63 AAEEYGYKHDLGIILPCDERVFRQL 87
             + EE+G++ + G+ +PCD+  F  L
Sbjct:    75 SEEEFGFRQESGLTIPCDQNTFLTL 99

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	92
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	1e-47
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	6e-33
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	1e-19
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	6e-17

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score =  146 bits (371), Expect = 1e-47
 Identities = 53/88 (60%), Positives = 72/88 (81%)

Query: 2   AIQEIFKQCSSFGKKCSCDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLE 61
            +++I K+CSS GKK   D+DG P DVPKGH  VYVGENRSRYI+PI++L HP+F++LL+
Sbjct: 14  MLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQ 73

Query: 62  KAAEEYGYKHDLGIILPCDERVFRQLTS 89
           +A EE+G+ HD+G+ +PC+E VFR LTS
Sbjct: 74  QAEEEFGFDHDMGLTIPCEEVVFRSLTS 101

Length = 104

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  109 bits (274), Expect = 6e-33
 Identities = 34/76 (44%), Positives = 47/76 (61%)

Query: 14 GKKCSCDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLEKAAEEYGYKHDL 73
          G+           DVPKGH  VYVGE   R+++PI++LNHP F+ LL++A EE+G+  D 
Sbjct: 21 GRSRGSSSKSSSADVPKGHFAVYVGEETRRFVVPISYLNHPLFQELLDRAEEEFGFDQDG 80

Query: 74 GIILPCDERVFRQLTS 89
          G+ +PCD  VF  L  
Sbjct: 81 GLTIPCDVVVFEHLLW 96

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 75.9 bits (186), Expect = 1e-19
 Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 5/69 (7%)

Query: 26  NDVPKGHCVVYVGEN----RSRYIIPITWLNHPKFKNLLEKAAEEYGYKHDL-GIILPCD 80
           + VPKGH  VYVGE     + R+++PI++LNHP FK  L +A EE+G+ H + G+ +PC 
Sbjct: 33  DHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCR 92

Query: 81  ERVFRQLTS 89
           E VF  L +
Sbjct: 93  EEVFLDLIA 101

Length = 105

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 69.0 bits (168), Expect = 6e-17
 Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 3/65 (4%)

Query: 28  VPKGHCVVYVGEN--RSRYIIPITWLNHPKFKNLLEKAAEEYGYKHDL-GIILPCDERVF 84
           VPKGH  VYVGE   + R+++PI++LNHP F+  L +A EE G+ H + G+ +PC E  F
Sbjct: 39  VPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESF 98

Query: 85  RQLTS 89
             L +
Sbjct: 99  LHLIT 103

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	92
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	89.28
PRK02899	197	adaptor protein; Provisional	88.24
PRK02315	233	adaptor protein; Provisional	84.73
PF05389	220	MecA: Negative regulator of genetic competence (Me	81.37

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=1.2e-42  Score=236.65  Aligned_cols=90  Identities=59%  Similarity=1.134  Sum_probs=85.6

Q ss_pred             hhHHHHhhhccCCCCccCCCCCCCCCCCCCeEEEEEcCCceEEEEeccCCCcHHHHHHHHHHHHhcCccCCCcEEecCcH
Q 040904            2 AIQEIFKQCSSFGKKCSCDQDGHPNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLEKAAEEYGYKHDLGIILPCDE   81 (92)
Q Consensus         2 ~~k~~lkr~~s~~~~~~~~~~~~~~~vpkG~~~VyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~g~L~IPC~~   81 (92)
                      .+|++||||+|.+++++++....|.+|||||||||||++++||+||++|||||+|++||++|||||||+|+|+|+|||++
T Consensus        14 ~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~G~L~IPC~~   93 (104)
T PLN03090         14 MLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEE   93 (104)
T ss_pred             HHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCCCcEEEeCCH
Confidence            36899999999999987766678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 040904           82 RVFRQLTSWL   91 (92)
Q Consensus        82 ~~F~~~l~~l   91 (92)
                      +.|++++|||
T Consensus        94 ~~Fe~ll~~i  103 (104)
T PLN03090         94 VVFRSLTSMI  103 (104)
T ss_pred             HHHHHHHHHh
Confidence            9999999997

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=1.5e-37  Score=211.90  Aligned_cols=87  Identities=41%  Similarity=0.846  Sum_probs=75.4

Q ss_pred             hhHHHHhhhccCCCCccCCCCCCCCCCCCCeEEEEEcC----CceEEEEeccCCCcHHHHHHHHHHHHhcCccC-CCcEE
Q 040904            2 AIQEIFKQCSSFGKKCSCDQDGHPNDVPKGHCVVYVGE----NRSRYIIPITWLNHPKFKNLLEKAAEEYGYKH-DLGII   76 (92)
Q Consensus         2 ~~k~~lkr~~s~~~~~~~~~~~~~~~vpkG~~~VyVG~----~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~-~g~L~   76 (92)
                      +.|++++|++ ++++.. .....+.+|||||||||||+    +++||+||++|||||.|++||++|||||||+| +|+|+
T Consensus        11 ~~k~~~~~~~-~~~~~~-~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~   88 (105)
T PLN03220         11 ATKQILKLNS-LANRNR-TSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLT   88 (105)
T ss_pred             HHHHHHHHHh-hccccc-ccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEE
Confidence            3589999999 555422 12346779999999999997    58999999999999999999999999999998 59999


Q ss_pred             ecCcHHHHHHHHHh
Q 040904           77 LPCDERVFRQLTSW   90 (92)
Q Consensus        77 IPC~~~~F~~~l~~   90 (92)
                      |||+++.|+++++.
T Consensus        89 IPCd~~~F~~ll~s  102 (105)
T PLN03220         89 IPCREEVFLDLIAS  102 (105)
T ss_pred             eeCCHHHHHHHHHh
Confidence            99999999999875

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=3.3e-37  Score=207.79  Aligned_cols=67  Identities=49%  Similarity=0.996  Sum_probs=65.2

Q ss_pred             CCCCCCCeEEEEEcCCceEEEEeccCCCcHHHHHHHHHHHHhcCccCCCcEEecCcHHHHHHHHHhh
Q 040904           25 PNDVPKGHCVVYVGENRSRYIIPITWLNHPKFKNLLEKAAEEYGYKHDLGIILPCDERVFRQLTSWL   91 (92)
Q Consensus        25 ~~~vpkG~~~VyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~g~L~IPC~~~~F~~~l~~l   91 (92)
                      ..++|+||||||||++++||+||++|||||+|++||++|||||||+++|+|+|||+++.|++++|+|
T Consensus        33 ~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~l   99 (100)
T PF02519_consen   33 ESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLL   99 (100)
T ss_pred             cCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHh
Confidence            3689999999999999999999999999999999999999999999999999999999999999987

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=3.9e-36  Score=205.74  Aligned_cols=89  Identities=40%  Similarity=0.755  Sum_probs=77.4

Q ss_pred             hhHHHHhhhccCCCCccC---CCCCCCCCCCCCeEEEEEcC--CceEEEEeccCCCcHHHHHHHHHHHHhcCccC-CCcE
Q 040904            2 AIQEIFKQCSSFGKKCSC---DQDGHPNDVPKGHCVVYVGE--NRSRYIIPITWLNHPKFKNLLEKAAEEYGYKH-DLGI   75 (92)
Q Consensus         2 ~~k~~lkr~~s~~~~~~~---~~~~~~~~vpkG~~~VyVG~--~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~-~g~L   75 (92)
                      +.|+|||..+...++.+.   +..+.+.+|||||+|||||+  |++||+||++|||||+|++||++|||||||+| +|+|
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L   89 (108)
T PLN03219         10 NAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGL   89 (108)
T ss_pred             hHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCE
Confidence            468899877777776442   22356778999999999997  58999999999999999999999999999998 5999


Q ss_pred             EecCcHHHHHHHHHh
Q 040904           76 ILPCDERVFRQLTSW   90 (92)
Q Consensus        76 ~IPC~~~~F~~~l~~   90 (92)
                      +|||+++.|+++++.
T Consensus        90 ~IPCd~~~F~~ll~~  104 (108)
T PLN03219         90 TIPCREESFLHLITS  104 (108)
T ss_pred             EEeCCHHHHHHHHHh
Confidence            999999999999975

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=89.28  E-value=0.44  Score=30.15  Aligned_cols=56  Identities=16%  Similarity=0.211  Sum_probs=41.0

Q ss_pred             EEEEcCCceEEEEeccCCC-cH--HHHHHHHHHHHhcCccCCCcEEecCcHHHHHHHHHhh
Q 040904           34 VVYVGENRSRYIIPITWLN-HP--KFKNLLEKAAEEYGYKHDLGIILPCDERVFRQLTSWL   91 (92)
Q Consensus        34 ~VyVG~~~~RfvVp~~~L~-hP--~F~~LL~~aeeEfG~~~~g~L~IPC~~~~F~~~l~~l   91 (92)
                      .+-||.  ++|.++.+.|. +|  .|..+++.......-+.+|.+-|-++...|++||.-|
T Consensus         2 ~lNVGG--~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~yl   60 (94)
T PF02214_consen    2 RLNVGG--TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYL   60 (94)
T ss_dssp             EEEETT--EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHH
T ss_pred             EEEECC--EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHH
Confidence            456786  69999998887 44  7888888653222234567899999999999999754

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=88.24  E-value=0.45  Score=35.26  Aligned_cols=25  Identities=28%  Similarity=0.624  Sum_probs=21.5

Q ss_pred             cHHHHHHHHHHHHhcCccCCCcEEe
Q 040904           53 HPKFKNLLEKAAEEYGYKHDLGIIL   77 (92)
Q Consensus        53 hP~F~~LL~~aeeEfG~~~~g~L~I   77 (92)
                      +-+|.++|++|..|+||..+|+|+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            3467778999999999999999875

>PRK02315 adaptor protein; Provisional

Probab=84.73  E-value=0.76  Score=34.73  Aligned_cols=25  Identities=12%  Similarity=0.282  Sum_probs=22.6

Q ss_pred             cHHHHHHHHHHHHhcCccCCCcEEe
Q 040904           53 HPKFKNLLEKAAEEYGYKHDLGIIL   77 (92)
Q Consensus        53 hP~F~~LL~~aeeEfG~~~~g~L~I   77 (92)
                      +-+|.++|++|..|+||..+|+|+|
T Consensus        38 e~fF~~mm~Ea~~e~~F~~~~pl~~   62 (233)
T PRK02315         38 EEFFYSMMDEVDEEDDFADEGPLWF   62 (233)
T ss_pred             HHHHHHHHHHhccccCcccCCeEEE
Confidence            4589999999999999999999876

>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation

Probab=81.37  E-value=0.47  Score=35.03  Aligned_cols=25  Identities=32%  Similarity=0.509  Sum_probs=0.0

Q ss_pred             cHHHHHHHHHHHHhcCccCCCcEEe
Q 040904           53 HPKFKNLLEKAAEEYGYKHDLGIIL   77 (92)
Q Consensus        53 hP~F~~LL~~aeeEfG~~~~g~L~I   77 (92)
                      +-.|.++|++|.+|+||+.+|+|++
T Consensus        38 e~fF~~ileea~~e~~F~~~~~l~~   62 (220)
T PF05389_consen   38 EEFFYSILEEADEEHGFENDGPLTF   62 (220)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHhccccCcccCCeEEE
Confidence            5679999999999999999998875

It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00