Citrus Sinensis ID: 040934

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
MKKEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQYS
Secondary Structure (PSIPRED)
ccccccEEEEEccccEEEEEHHHHHHHHHHHHHHccccccccccccEEEcccccHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEccccEEEEEHHHHHHHHHHHHHHccccccccccccEEEcccccHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MKKEDTVKLISAEGFEFVISKEAAMVSQTIRNMltspggfaetehgevtfpeISTTILEKICQYFYWSLQYS
Flexible Loop (DISEMBL)
mkkedtvklisaegfefvisKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQYS
Low Complexity Region (SEG)
MKKEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQYS
Disordered region (IsUnstruct)
*******KLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQ**
Disordered Region (DISOPRED)
***EDTV*LISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQYS
Disordered Region (DISEMBL)
MKKEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQYS
Disordered Region (DISPRO)
***EDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQYS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKKEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQYS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	72	2.2.26 [Sep-21-2011]
P83941	112	Transcription elongation	yes	no	0.916	0.589	0.484	3e-13
P83940	112	Transcription elongation	yes	no	0.916	0.589	0.484	3e-13
Q15369	112	Transcription elongation	yes	no	0.916	0.589	0.484	3e-13
Q2KII4	112	Transcription elongation	yes	no	0.916	0.589	0.484	3e-13
Q9USX9	97	Elongin-C OS=Schizosaccha	yes	no	0.972	0.721	0.458	1e-11
Q54Q05	109	Transcription elongation	yes	no	0.944	0.623	0.434	2e-10
Q751F9	100	Elongin-C OS=Ashbya gossy	yes	no	0.875	0.63	0.369	7e-06
Q03071	99	Elongin-C OS=Saccharomyce	yes	no	0.916	0.666	0.362	2e-05

>sp|P83941|ELOC_RAT Transcription elongation factor B polypeptide 1 OS=Rattus norvegicus GN=Tceb1 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 47/66 (71%)

Query: 7  VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
          VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF 
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67 WSLQYS 72
          + ++Y+
Sbjct: 79 YKVRYT 84

The elongin BC complex seems to be involved as an adapter protein in the proteasomal degradation of target proteins via different E3 ubiquitin ligase complexes, including the von Hippel-Lindau ubiquitination complex CBC(VHL). By binding to BC-box motifs it seems to link target recruitment subunits, like VHL and members of the SOCS box family, to Cullin/RBX1 modules that activate E2 ubiquitination enzymes.
Rattus norvegicus (taxid: 10116)

>sp|P83940|ELOC_MOUSE Transcription elongation factor B polypeptide 1 OS=Mus musculus GN=Tceb1 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 47/66 (71%)

Query: 7  VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
          VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF 
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67 WSLQYS 72
          + ++Y+
Sbjct: 79 YKVRYT 84

The elongin BC complex seems to be involved as an adapter protein in the proteasomal degradation of target proteins via different E3 ubiquitin ligase complexes, including the von Hippel-Lindau ubiquitination complex CBC(VHL). By binding to BC-box motifs it seems to link target recruitment subunits, like VHL and members of the SOCS box family, to Cullin/RBX1 modules that activate E2 ubiquitination enzymes.

Mus musculus (taxid: 10090)

>sp|Q15369|ELOC_HUMAN Transcription elongation factor B polypeptide 1 OS=Homo sapiens GN=TCEB1 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 47/66 (71%)

Query: 7  VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
          VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF 
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67 WSLQYS 72
          + ++Y+
Sbjct: 79 YKVRYT 84

The elongin BC complex seems to be involved as an adapter protein in the proteasomal degradation of target proteins via different E3 ubiquitin ligase complexes, including the von Hippel-Lindau ubiquitination complex CBC(VHL). By binding to BC-box motifs it seems to link target recruitment subunits, like VHL and members of the SOCS box family, to Cullin/RBX1 modules that activate E2 ubiquitination enzymes.

Homo sapiens (taxid: 9606)

>sp|Q2KII4|ELOC_BOVIN Transcription elongation factor B polypeptide 1 OS=Bos taurus GN=TCEB1 PE=3 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 47/66 (71%)

Query: 7  VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
          VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF 
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67 WSLQYS 72
          + ++Y+
Sbjct: 79 YKVRYT 84

The elongin BC complex seems to be involved as an adapter protein in the proteasomal degradation of target proteins via different E3 ubiquitin ligase complexes, including the von Hippel-Lindau ubiquitination complex CBC(VHL). By binding to BC-box motifs it seems to link target recruitment subunits, like VHL and members of the SOCS box family, to Cullin/RBX1 modules that activate E2 ubiquitination enzymes.

Bos taurus (taxid: 9913)

>sp|Q9USX9|ELOC_SCHPO Elongin-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elc1 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 2/72 (2%)

Query: 1  MKKEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEK 60
          M+KE  V+LIS +GF F++ KE A +S TIR +L   G F+E +  E TFP+I  T+LEK
Sbjct: 1  MEKE-YVRLISGDGFVFILEKEIACLSGTIRAILNE-GIFSEAQKNECTFPDIRATLLEK 58

Query: 61 ICQYFYWSLQYS 72
          +C+Y +++ +Y 
Sbjct: 59 VCEYLHYNYRYK 70

Prevents degradation of interacting proteins by the proteasome.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54Q05|ELOC_DICDI Transcription elongation factor B polypeptide 1 OS=Dictyostelium discoideum GN=tceb1 PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 48/69 (69%), Gaps = 1/69 (1%)

Query: 5  DTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPG-GFAETEHGEVTFPEISTTILEKICQ 63
          D ++L S+ G EFV+S++ + VS TI++ML+     F E ++ E+ F EIST +LEK+ Q
Sbjct: 13 DVLRLYSSTGHEFVLSRKMSYVSGTIKSMLSGDNSNFMEDQNNEIRFREISTPVLEKVIQ 72

Query: 64 YFYWSLQYS 72
          YFY+  +Y+
Sbjct: 73 YFYFKNKYT 81

The elongin BC complex seems to be involved as an adapter protein in the proteasomal degradation of target proteins via different E3 ubiquitin ligase complexes.

Dictyostelium discoideum (taxid: 44689)

>sp|Q751F9|ELOC_ASHGO Elongin-C OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ELC1 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 7  VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
          V L+S++G  F + +E AM+S T+  ML S   FAE +  +VT P I +++L K+ +Y  
Sbjct: 7  VTLVSSDGKSFEVPRERAMLSPTLAKMLDS--SFAEAKEAKVTLPTIESSMLAKVVEYLE 64

Query: 67 WSLQY 71
          +  +Y
Sbjct: 65 YLEEY 69

Prevents degradation of interacting proteins by the proteasome.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q03071|ELOC_YEAST Elongin-C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELC1 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 3/69 (4%)

Query: 4  EDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQ 63
          +D V L+S +  E+ IS+ AAM+S T++ M+  P  F E++ G +   +  + ILEK  +
Sbjct: 3  QDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGP--FRESK-GRIELKQFDSHILEKAVE 59

Query: 64 YFYWSLQYS 72
          Y  ++L+YS
Sbjct: 60 YLNYNLKYS 68

Prevents degradation of interacting proteins like PCL6 by the proteasome.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
224106387	98	predicted protein [Populus trichocarpa]	1.0	0.734	0.944	9e-33
255558940	98	Transcription elongation factor B polype	1.0	0.734	0.930	2e-32
225434792	98	PREDICTED: transcription elongation fact	1.0	0.734	0.902	2e-31
351724177	98	uncharacterized protein LOC100305702 [Gl	1.0	0.734	0.875	3e-30
449455078	98	PREDICTED: transcription elongation fact	1.0	0.734	0.861	5e-30
388509300	98	unknown [Medicago truncatula]	1.0	0.734	0.833	2e-29
351723207	98	uncharacterized protein LOC100500097 [Gl	1.0	0.734	0.847	2e-29
18424201	96	transcription elongation factor B, polyp	0.944	0.708	0.838	3e-26
195625878	111	elongin C [Zea mays]	0.986	0.639	0.770	2e-25
115486829	124	Os11g0707700 [Oryza sativa Japonica Grou	0.916	0.532	0.833	3e-25

>gi|224106387|ref|XP_002314149.1| predicted protein [Populus trichocarpa] gi|222850557|gb|EEE88104.1| predicted protein [Populus trichocarpa]

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 68/72 (94%), Positives = 70/72 (97%)

Query: 1  MKKEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEK 60
          M+KEDTVKLISAEGFEFVI KEAAMVSQTIRNMLTSPG FAETEHGEVTFPEISTTILEK
Sbjct: 1  MRKEDTVKLISAEGFEFVIHKEAAMVSQTIRNMLTSPGSFAETEHGEVTFPEISTTILEK 60

Query: 61 ICQYFYWSLQYS 72
          ICQYFYWSLQY+
Sbjct: 61 ICQYFYWSLQYA 72

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558940|ref|XP_002520493.1| Transcription elongation factor B polypeptide, putative [Ricinus communis] gi|223540335|gb|EEF41906.1| Transcription elongation factor B polypeptide, putative [Ricinus communis]

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/72 (93%), Positives = 70/72 (97%)

Query: 1  MKKEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEK 60
          M+KEDTVKLISAEGFEFVI KEAAMVSQTIRNMLTSPG FAET+HGEVTFPEISTTILEK
Sbjct: 1  MRKEDTVKLISAEGFEFVIDKEAAMVSQTIRNMLTSPGSFAETQHGEVTFPEISTTILEK 60

Query: 61 ICQYFYWSLQYS 72
          ICQYFYWSLQY+
Sbjct: 61 ICQYFYWSLQYA 72

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434792|ref|XP_002282124.1| PREDICTED: transcription elongation factor B polypeptide 1 [Vitis vinifera]

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/72 (90%), Positives = 68/72 (94%)

Query: 1  MKKEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEK 60
          M+KEDTVKLISAEGFEFVI K AAMVSQTIRNMLTSPG FAE EHGEVTFPEISTTILEK
Sbjct: 1  MRKEDTVKLISAEGFEFVIDKRAAMVSQTIRNMLTSPGSFAEREHGEVTFPEISTTILEK 60

Query: 61 ICQYFYWSLQYS 72
          ICQYFYWSLQ++
Sbjct: 61 ICQYFYWSLQFA 72

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724177|ref|NP_001235513.1| uncharacterized protein LOC100305702 [Glycine max] gi|255626357|gb|ACU13523.1| unknown [Glycine max]

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/72 (87%), Positives = 67/72 (93%)

Query: 1  MKKEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEK 60
          MKKEDTVKLISAEGFEFV+ KEAAMVSQTI NMLTSPG FAE +HGEVTFPEISTTILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVVDKEAAMVSQTIHNMLTSPGSFAERQHGEVTFPEISTTILEK 60

Query: 61 ICQYFYWSLQYS 72
          ICQYFYW LQ++
Sbjct: 61 ICQYFYWHLQFA 72

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455078|ref|XP_004145280.1| PREDICTED: transcription elongation factor B polypeptide 1-like [Cucumis sativus] gi|449474021|ref|XP_004154051.1| PREDICTED: transcription elongation factor B polypeptide 1-like [Cucumis sativus] gi|449508510|ref|XP_004163332.1| PREDICTED: transcription elongation factor B polypeptide 1-like [Cucumis sativus]

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 62/72 (86%), Positives = 69/72 (95%)

Query: 1  MKKEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEK 60
          MKKEDTVKLISAEGFEFVI K+AAMVSQTIRNMLTSPG FAE++H EVTFPEISTTILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWSLQYS 72
          ICQYF+W+LQ++
Sbjct: 61 ICQYFHWNLQFA 72

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509300|gb|AFK42716.1| unknown [Medicago truncatula]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/72 (83%), Positives = 68/72 (94%)

Query: 1  MKKEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEK 60
          MKKEDTVKLIS++GFEFV+ KEAAMVSQTIRNMLTSPG FAE EHG+VTFPEIS+TILEK
Sbjct: 1  MKKEDTVKLISSDGFEFVVDKEAAMVSQTIRNMLTSPGSFAEREHGQVTFPEISSTILEK 60

Query: 61 ICQYFYWSLQYS 72
          ICQYFYW L+++
Sbjct: 61 ICQYFYWHLEFA 72

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723207|ref|NP_001236759.1| uncharacterized protein LOC100500097 [Glycine max] gi|255629123|gb|ACU14906.1| unknown [Glycine max]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/72 (84%), Positives = 67/72 (93%)

Query: 1  MKKEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEK 60
          MKKEDTVKLIS+EGFEFV+ KEAA+VSQTI NMLTSPG FAE +HGEVTFPEISTTILEK
Sbjct: 1  MKKEDTVKLISSEGFEFVVDKEAAIVSQTIHNMLTSPGSFAERQHGEVTFPEISTTILEK 60

Query: 61 ICQYFYWSLQYS 72
          ICQYFYW LQ++
Sbjct: 61 ICQYFYWHLQFA 72

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424201|ref|NP_568900.1| transcription elongation factor B, polypeptide 1 [Arabidopsis thaliana] gi|297790272|ref|XP_002863037.1| SKP1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297793455|ref|XP_002864612.1| SKP1 family protein [Arabidopsis lyrata subsp. lyrata] gi|9759236|dbj|BAB09760.1| unnamed protein product [Arabidopsis thaliana] gi|15028385|gb|AAK76669.1| putative elongin protein [Arabidopsis thaliana] gi|20465563|gb|AAM20264.1| unknown protein [Arabidopsis thaliana] gi|297308839|gb|EFH39296.1| SKP1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297310447|gb|EFH40871.1| SKP1 family protein [Arabidopsis lyrata subsp. lyrata] gi|332009765|gb|AED97148.1| transcription elongation factor B, polypeptide 1 [Arabidopsis thaliana]

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/68 (83%), Positives = 64/68 (94%)

Query: 5  DTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQY 64
          +TVKLIS EGFEFVI +EAAMVSQTIR+MLTSPGGF+E++ G VTFP+ISTTILEKICQY
Sbjct: 3  ETVKLISMEGFEFVIDREAAMVSQTIRSMLTSPGGFSESKDGVVTFPDISTTILEKICQY 62

Query: 65 FYWSLQYS 72
          FYWSLQYS
Sbjct: 63 FYWSLQYS 70

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195625878|gb|ACG34769.1| elongin C [Zea mays]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/74 (77%), Positives = 63/74 (85%), Gaps = 3/74 (4%)

Query: 2  KKEDT---VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTIL 58
          ++EDT   VKLISAEGFEFV+ K+AAMVS T+RNMLTSPGGF+ET  GEV FPEI T IL
Sbjct: 11 EEEDTAGVVKLISAEGFEFVVDKKAAMVSNTLRNMLTSPGGFSETRQGEVRFPEIPTNIL 70

Query: 59 EKICQYFYWSLQYS 72
          EKICQYFYWSL YS
Sbjct: 71 EKICQYFYWSLHYS 84

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115486829|ref|NP_001068558.1| Os11g0707700 [Oryza sativa Japonica Group] gi|62733303|gb|AAX95420.1| conserved hypothetical protein protein [Oryza sativa Japonica Group] gi|77552732|gb|ABA95529.1| Skp1 family, tetramerisation domain containing protein, expressed [Oryza sativa Japonica Group] gi|113645780|dbj|BAF28921.1| Os11g0707700 [Oryza sativa Japonica Group] gi|215693803|dbj|BAG89002.1| unnamed protein product [Oryza sativa Japonica Group] gi|222616452|gb|EEE52584.1| hypothetical protein OsJ_34887 [Oryza sativa Japonica Group]

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/66 (83%), Positives = 59/66 (89%)

Query: 7  VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
          VKLISAEGFEFV+ K+AAMVS T+RNMLTSPGGF+ET  GEV FPEIST ILEKICQYFY
Sbjct: 32 VKLISAEGFEFVVDKKAAMVSNTLRNMLTSPGGFSETREGEVRFPEISTPILEKICQYFY 91

Query: 67 WSLQYS 72
          WSL YS
Sbjct: 92 WSLHYS 97

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
TAIR|locus:2168454	96	AT5G59140 [Arabidopsis thalian	0.944	0.708	0.838	1.9e-26
FB|FBgn0023211	117	Elongin-C "Elongin C" [Drosoph	0.916	0.564	0.515	1e-13
UNIPROTKB|Q5ZJT7	112	TCEB1 "Uncharacterized protein	0.916	0.589	0.484	2.7e-13
UNIPROTKB|Q2KII4	112	TCEB1 "Transcription elongatio	0.916	0.589	0.484	2.7e-13
UNIPROTKB|E2R129	151	TCEB1 "Uncharacterized protein	0.916	0.437	0.484	2.7e-13
UNIPROTKB|J9P2H3	112	TCEB1 "Uncharacterized protein	0.916	0.589	0.484	2.7e-13
UNIPROTKB|E5RHG8	89	TCEB1 "Transcription elongatio	0.916	0.741	0.484	2.7e-13
UNIPROTKB|Q15369	112	TCEB1 "Transcription elongatio	0.916	0.589	0.484	2.7e-13
UNIPROTKB|F2Z545	112	TCEB1 "Uncharacterized protein	0.916	0.589	0.484	2.7e-13
MGI|MGI:1915173	112	Tceb1 "transcription elongatio	0.916	0.589	0.484	2.7e-13

TAIR|locus:2168454 AT5G59140 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 57/68 (83%), Positives = 64/68 (94%)

Query:     5 DTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQY 64
             +TVKLIS EGFEFVI +EAAMVSQTIR+MLTSPGGF+E++ G VTFP+ISTTILEKICQY
Sbjct:     3 ETVKLISMEGFEFVIDREAAMVSQTIRSMLTSPGGFSESKDGVVTFPDISTTILEKICQY 62

Query:    65 FYWSLQYS 72
             FYWSLQYS
Sbjct:    63 FYWSLQYS 70

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

FB|FBgn0023211 Elongin-C "Elongin C" [Drosophila melanogaster (taxid:7227)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/66 (51%), Positives = 48/66 (72%)

Query:     7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
             VKLIS++G EFV+ +E A+ S TIR ML+ PG FAE E  EV F EI + +L+K+C YF 
Sbjct:    24 VKLISSDGHEFVVKREHALTSGTIRAMLSGPGQFAENEANEVHFREIPSHVLQKVCMYFT 83

Query:    67 WSLQYS 72
             + ++Y+
Sbjct:    84 YKVRYT 89

GO:0008023 "transcription elongation factor complex" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0031462 "Cul2-RING ubiquitin ligase complex" evidence=IDA

UNIPROTKB|Q5ZJT7 TCEB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 32/66 (48%), Positives = 47/66 (71%)

Query:     7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
             VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF 
Sbjct:    19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query:    67 WSLQYS 72
             + ++Y+
Sbjct:    79 YKVRYT 84

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q2KII4 TCEB1 "Transcription elongation factor B polypeptide 1" [Bos taurus (taxid:9913)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 32/66 (48%), Positives = 47/66 (71%)

Query:     7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
             VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF 
Sbjct:    19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query:    67 WSLQYS 72
             + ++Y+
Sbjct:    79 YKVRYT 84

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|E2R129 TCEB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 32/66 (48%), Positives = 47/66 (71%)

Query:     7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
             VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF 
Sbjct:    59 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 118

Query:    67 WSLQYS 72
             + ++Y+
Sbjct:   119 YKVRYT 124

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|J9P2H3 TCEB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 32/66 (48%), Positives = 47/66 (71%)

Query:     7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
             VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF 
Sbjct:    19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query:    67 WSLQYS 72
             + ++Y+
Sbjct:    79 YKVRYT 84

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|E5RHG8 TCEB1 "Transcription elongation factor B polypeptide 1" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 32/66 (48%), Positives = 47/66 (71%)

Query:     7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
             VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF 
Sbjct:    19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query:    67 WSLQYS 72
             + ++Y+
Sbjct:    79 YKVRYT 84

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0030891 "VCB complex" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q15369 TCEB1 "Transcription elongation factor B polypeptide 1" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 32/66 (48%), Positives = 47/66 (71%)

Query:     7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
             VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF 
Sbjct:    19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query:    67 WSLQYS 72
             + ++Y+
Sbjct:    79 YKVRYT 84

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0030891 "VCB complex" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0033554 "cellular response to stress" evidence=TAS

GO:0050434 "positive regulation of viral transcription" evidence=TAS

GO:0061418 "regulation of transcription from RNA polymerase II promoter in response to hypoxia" evidence=TAS

GO:0071456 "cellular response to hypoxia" evidence=TAS

UNIPROTKB|F2Z545 TCEB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 32/66 (48%), Positives = 47/66 (71%)

Query:     7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
             VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF 
Sbjct:    19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query:    67 WSLQYS 72
             + ++Y+
Sbjct:    79 YKVRYT 84

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

MGI|MGI:1915173 Tceb1 "transcription elongation factor B (SIII), polypeptide 1" [Mus musculus (taxid:10090)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 32/66 (48%), Positives = 47/66 (71%)

Query:     7 VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
             VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF 
Sbjct:    19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query:    67 WSLQYS 72
             + ++Y+
Sbjct:    79 YKVRYT 84

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0030891 "VCB complex" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	72
smart00512	104	smart00512, Skp1, Found in Skp1 protein family	4e-13
pfam03931	61	pfam03931, Skp1_POZ, Skp1 family, tetramerisation	2e-08

>gnl|CDD|214704 smart00512, Skp1, Found in Skp1 protein family

 Score = 58.5 bits (142), Expect = 4e-13
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 7  VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
          +KLIS++G  F + +E A  S+TI+ M+   G   E  +  +  P +++ IL K+ +Y  
Sbjct: 4  IKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDE-NNNPIPLPNVTSKILSKVIEYCE 62

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues. Length = 104

>gnl|CDD|217800 pfam03931, Skp1_POZ, Skp1 family, tetramerisation domain

 Score = 45.3 bits (108), Expect = 2e-08
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 7  VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQY 64
          +KL S++G  F + +E A  S+TI+ M+   G         +  P +++ IL K+ ++
Sbjct: 3  IKLTSSDGEIFEVEREVARQSKTIKAMIEDLGVDD-----PIPLPNVTSKILAKVIEW 55

Length = 61

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	99.95
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	99.92
KOG1724	162	consensus SCF ubiquitin ligase, Skp1 component [Po	99.88
KOG3473	112	consensus RNA polymerase II transcription elongati	99.85
COG5201	158	SKP1 SCF ubiquitin ligase, SKP1 component [Posttra	99.69
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	98.12
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	97.69
PHA02713	557	hypothetical protein; Provisional	97.35
PHA03098	534	kelch-like protein; Provisional	95.62
PHA02790	480	Kelch-like protein; Provisional	95.5
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.49
KOG4350	620	consensus Uncharacterized conserved protein, conta	91.67
PF07928	135	Vps54: Vps54-like protein; InterPro: IPR012501 Thi	85.89

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=99.95  E-value=9.2e-28  Score=131.00  Aligned_cols=62  Identities=37%  Similarity=0.542  Sum_probs=55.0

Q ss_pred             ceEEEEeCCCcEEEeeHHHHHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhhcc
Q 040934            5 DTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQ   70 (72)
Q Consensus         5 ~~i~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~h~~   70 (72)
                      ++|+|+|+||++|+|++++|++|++|++|+++.+..    +.+||||+|++++|+||+|||+||++
T Consensus         1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~~----~~~Ipl~~v~~~~L~kViewc~~H~~   62 (62)
T PF03931_consen    1 MYVKLVSSDGQEFEVSREAAKQSKTIKNMLEDLGDE----DEPIPLPNVSSRILKKVIEWCEHHKN   62 (62)
T ss_dssp             -EEEEEETTSEEEEEEHHHHTTSHHHHHHHHCTCCC----GTEEEETTS-HHHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCEEEeeHHHHHHhHHHHHHHhhhccc----ccccccCccCHHHHHHHHHHHHhcCC
Confidence            369999999999999999999999999999987652    22899999999999999999999974

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>smart00512 Skp1 Found in Skp1 protein family

Probab=99.92  E-value=1.5e-24  Score=128.06  Aligned_cols=66  Identities=29%  Similarity=0.475  Sum_probs=59.5

Q ss_pred             ceEEEEeCCCcEEEeeHHHHHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhhccC
Q 040934            5 DTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQY   71 (72)
Q Consensus         5 ~~i~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~h~~y   71 (72)
                      ++|+|+|+||++|.|++++|++|++|++|+++.+...+ ...+||||+|++.+|+||++||+||++|
T Consensus         2 ~~v~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~~-~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~   67 (104)
T smart00512        2 KYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDE-NNNPIPLPNVTSKILSKVIEYCEHHVDD   67 (104)
T ss_pred             CeEEEEeCCCCEEEecHHHHHHHHHHHHHHHccCcccC-CCCCccCCCcCHHHHHHHHHHHHHcccC
Confidence            57999999999999999999999999999998765333 2368999999999999999999999987

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=1.3e-22  Score=128.51  Aligned_cols=65  Identities=26%  Similarity=0.401  Sum_probs=57.8

Q ss_pred             CceEEEEeCCCcEEEeeHHHHHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhhcc
Q 040934            4 EDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQ   70 (72)
Q Consensus         4 ~~~i~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~h~~   70 (72)
                      ..+|+|+|+||++|+|++++|++|.+|++++.+.+...+  +.+||||+|+|.||+|||+||+||++
T Consensus         4 ~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~--~~~IPl~nV~~~iL~kVIewC~~Hk~   68 (162)
T KOG1724|consen    4 KKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADE--NDPIPLPNVTSKILKKVIEWCKKHKD   68 (162)
T ss_pred             CCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCcc--CCccccCccCHHHHHHHHHHHHHccc
Confidence            578999999999999999999999999998887654221  25899999999999999999999985

>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]

Probab=99.85  E-value=2.2e-21  Score=114.04  Aligned_cols=69  Identities=46%  Similarity=0.821  Sum_probs=66.3

Q ss_pred             CceEEEEeCCCcEEEeeHHHHHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhhccCC
Q 040934            4 EDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQYS   72 (72)
Q Consensus         4 ~~~i~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~h~~y~   72 (72)
                      +++|+|+|+||.+|.+.|++|+.|+|||.|+.+.+.+.++..+++.|+++++.+|+|||+|+.|+.+|+
T Consensus        16 ~~yVkLvS~Ddhefiikre~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~   84 (112)
T KOG3473|consen   16 SMYVKLVSSDDHEFIIKREHAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYT   84 (112)
T ss_pred             hhheEeecCCCcEEEEeehhhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeec
Confidence            579999999999999999999999999999999999999899999999999999999999999999885

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=8.1e-17  Score=99.17  Aligned_cols=61  Identities=21%  Similarity=0.305  Sum_probs=56.3

Q ss_pred             eEEEEeCCCcEEEeeHHHHHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhhcc
Q 040934            6 TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQ   70 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~h~~   70 (72)
                      +|.|+|.||.+|.|+..+|..|-+|++|+.+.+.    ..-+||+|+|++++|.||++||+||..
T Consensus         3 ~i~l~s~dge~F~vd~~iAerSiLikN~l~d~~~----~n~p~p~pnVrSsvl~kv~ew~ehh~~   63 (158)
T COG5201           3 MIELESIDGEIFRVDENIAERSILIKNMLCDSTA----CNYPIPAPNVRSSVLMKVQEWMEHHTS   63 (158)
T ss_pred             ceEEEecCCcEEEehHHHHHHHHHHHHHhccccc----cCCCCcccchhHHHHHHHHHHHHhccc
Confidence            7999999999999999999999999999987654    466799999999999999999999975

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=98.12  E-value=2.8e-05  Score=44.68  Aligned_cols=62  Identities=26%  Similarity=0.478  Sum_probs=48.8

Q ss_pred             ceEEEEeCCCcEEEeeHHH-HHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHh
Q 040934            5 DTVKLISAEGFEFVISKEA-AMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYW   67 (72)
Q Consensus         5 ~~i~L~S~Dg~~f~v~~~~-a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~   67 (72)
                      .-++|+..||..|.+.+.+ +.+|+.+++++...+ ..+.....|++++++...++.+++||+.
T Consensus        11 ~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~Y~   73 (111)
T PF00651_consen   11 SDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSK-FKESTVPEISLPDVSPEAFEAFLEYMYT   73 (111)
T ss_dssp             --EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTT-STTSSEEEEEETTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCEEEeechhhhhccchhhhhcccccc-cccccccccccccccccccccccccccC
Confidence            3588999999999999999 577999999999762 1222234699999999999999999964

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=97.69  E-value=0.00015  Score=39.20  Aligned_cols=57  Identities=14%  Similarity=0.292  Sum_probs=45.8

Q ss_pred             EeCCCcEEEeeHHHHHH-hHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhh
Q 040934           10 ISAEGFEFVISKEAAMV-SQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWS   68 (72)
Q Consensus        10 ~S~Dg~~f~v~~~~a~~-S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~h   68 (72)
                      ...+|..|.+.+.++.. |..++.|+....  .+.....|++++++...++.+++||+.-
T Consensus         4 i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~--~~~~~~~i~l~~~~~~~f~~~l~~ly~~   61 (90)
T smart00225        4 LVVGGKKFKAHKAVLAACSPYFKALFSGDF--KESKKSEIYLDDVSPEDFRALLEFLYTG   61 (90)
T ss_pred             EEECCEEEehHHHHHhhcCHHHHHHHcCCC--ccCCCCEEEecCCCHHHHHHHHHeecCc
Confidence            35578999999988664 799999998643  2334678999999999999999998753

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>PHA02713 hypothetical protein; Provisional

Probab=97.35  E-value=0.0006  Score=50.05  Aligned_cols=60  Identities=22%  Similarity=0.262  Sum_probs=50.1

Q ss_pred             eEEEEeCCCcEEEeeHHH-HHHhHHHHHHhcCCCCCCCC-CCcccccCCCCHHHHHHHHHHHHh
Q 040934            6 TVKLISAEGFEFVISKEA-AMVSQTIRNMLTSPGGFAET-EHGEVTFPEISTTILEKICQYFYW   67 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~-a~~S~~i~~~l~~~~~~~e~-~~~~Ipl~~v~~~~L~kVieyc~~   67 (72)
                      -|+|...+|++|.+.+.+ |..|.-++.|+..  ++.|. ..+.|.|.++++.+|+.|++|++.
T Consensus        27 DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~--~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt   88 (557)
T PHA02713         27 DVIITIGDGEEIKAHKTILAAGSKYFRTLFTT--PMIIRDLVTRVNLQMFDKDAVKNIVQYLYN   88 (557)
T ss_pred             CEEEEeCCCCEEeehHHHHhhcCHHHHHHhcC--CchhhccCceEEeccCCHHHHHHHHHHhcC
Confidence            478888779999999999 5579999999985  34443 356799999999999999999875

>PHA03098 kelch-like protein; Provisional

Probab=95.62  E-value=0.054  Score=39.05  Aligned_cols=55  Identities=16%  Similarity=0.264  Sum_probs=44.6

Q ss_pred             EEEE-eCCCcEEEeeHHHHH-HhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHh
Q 040934            7 VKLI-SAEGFEFVISKEAAM-VSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYW   67 (72)
Q Consensus         7 i~L~-S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~   67 (72)
                      ++|. +.+|++|.+.+.++. .|+.++.|+.+.  +.   ...|.|+. +..+++.|++|++.
T Consensus        12 v~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~--~~---~~~i~l~~-~~~~~~~~l~y~Yt   68 (534)
T PHA03098         12 ESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNN--FK---ENEINLNI-DYDSFNEVIKYIYT   68 (534)
T ss_pred             EEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCC--CC---CceEEecC-CHHHHHHHHHHhcC
Confidence            4444 478999999999955 699999999853  22   46788988 99999999999875

>PHA02790 Kelch-like protein; Provisional

Probab=95.50  E-value=0.026  Score=40.70  Aligned_cols=55  Identities=22%  Similarity=0.336  Sum_probs=42.8

Q ss_pred             EEeCCCcEEEeeHHH-HHHhHHHHHHhcCCCCCCCCCCccccc--CCCCHHHHHHHHHHHH
Q 040934            9 LISAEGFEFVISKEA-AMVSQTIRNMLTSPGGFAETEHGEVTF--PEISTTILEKICQYFY   66 (72)
Q Consensus         9 L~S~Dg~~f~v~~~~-a~~S~~i~~~l~~~~~~~e~~~~~Ipl--~~v~~~~L~kVieyc~   66 (72)
                      +.-.-|.+|.+.|.+ |..|+-+|.|+.+  ++.|... .|.+  .+|+..+|+.|++|++
T Consensus        25 ~~~~~~~~~~~HR~VLAa~S~YFraMF~~--~~~Es~~-~v~~~~~~v~~~~l~~lldy~Y   82 (480)
T PHA02790         25 IIEAIGGNIIVNSTILKKLSPYFRTHLRQ--KYTKNKD-PVTRVCLDLDIHSLTSIVIYSY   82 (480)
T ss_pred             EEEEcCcEEeeehhhhhhcCHHHHHHhcC--Ccccccc-ceEEEecCcCHHHHHHHHHhhe
Confidence            444568899999999 7779999999975  4555533 3544  3899999999999985

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.49  E-value=0.04  Score=40.90  Aligned_cols=59  Identities=29%  Similarity=0.429  Sum_probs=48.6

Q ss_pred             EEEEeCCCcEEEeeHHH-HHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhh
Q 040934            7 VKLISAEGFEFVISKEA-AMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWS   68 (72)
Q Consensus         7 i~L~S~Dg~~f~v~~~~-a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~h   68 (72)
                      +.|.- ++++|...|-+ |..|.-+|.|+..  +..|.....|.|..|++.+|+.+++|++..
T Consensus        39 v~L~v-~~~~~~aHR~VLAa~S~YFraMFt~--~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~   98 (571)
T KOG4441|consen   39 VTLLV-GDREFPAHRVVLAACSPYFRAMFTS--GLKESKQKEINLEGVDPETLELLLDYAYTG   98 (571)
T ss_pred             EEEEE-CCeeechHHHHHHhccHHHHHHhcC--CcccccceEEEEecCCHHHHHHHHHHhhcc
Confidence            44444 45999999998 6779999999995  455677888999999999999999998753

>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=91.67  E-value=0.45  Score=35.04  Aligned_cols=59  Identities=20%  Similarity=0.386  Sum_probs=48.3

Q ss_pred             eEEEEeCCCcEEEeeHHH-HHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHh
Q 040934            6 TVKLISAEGFEFVISKEA-AMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYW   67 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~-a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~   67 (72)
                      -|+|+-.| .+|...+-+ |..|..+|.||=  |++.|.....|||..-++..++.++.|++-
T Consensus        46 DVtfvve~-~rfpAHRvILAaRs~yFRAlLY--gGm~Es~q~~ipLq~t~~eAF~~lLrYiYt  105 (620)
T KOG4350|consen   46 DVTFVVED-TRFPAHRVILAARSSYFRALLY--GGMQESHQQLIPLQETNSEAFRALLRYIYT  105 (620)
T ss_pred             ceEEEEec-cccchhhhhHHHHHHHHHHHHh--hhhhhhhhcccccccccHHHHHHHHHHHhh
Confidence            46777666 778777776 778999999987  467787788999988889999999999864

>PF07928 Vps54: Vps54-like protein; InterPro: IPR012501 This family contains various proteins that are homologues of the yeast Vps54 protein, such as the rat homologue (Q9JMK8 from SWISSPROT), the human homologue (Q86YF7 from SWISSPROT), and the mouse homologue (Q8R3X1 from SWISSPROT)

Probab=85.89  E-value=0.24  Score=30.60  Aligned_cols=45  Identities=18%  Similarity=0.417  Sum_probs=0.0

Q ss_pred             CCcEEEeeHHHHHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHh
Q 040934           13 EGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYW   67 (72)
Q Consensus        13 Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~   67 (72)
                      ||+.|.|...+...-+.|.+.+.-..          .+|.+..+++.+++|++..
T Consensus         1 d~e~f~vv~s~l~ll~~l~~Y~~~~~----------~~P~~a~di~~~l~elLk~   45 (135)
T PF07928_consen    1 DNEKFVVVGSALLLLKMLSDYLQLAS----------NFPSLAPDILSRLLELLKL   45 (135)
T ss_dssp             -------------------------------------------------------
T ss_pred             CCCceecHHHHHHHHHHHHHHHHHHH----------HCchhHHHHHHHHHHHHHH
Confidence            78999999999988888888776432          3666889999999998754

In yeast, Vps54 associates with Vps52 and Vps53 proteins to form a trimolecular complex that is involved in protein transport between Golgi, endosomal, and vacuolar compartments []. All Vps54 homologues contain a coiled coil region (not found in the region featured in this family) and multiple dileucine motifs []. ; GO: 0042147 retrograde transport, endosome to Golgi; PDB: 3N1E_B 3N1B_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	72
4b9k_E	97	Pvhl-Elob-Eloc Complex_(2s,4r)-1-(3-Amino-2-Methylb		2e-14
2c9w_C	97	Crystal Structure Of Socs-2 In Complex With Elongin		2e-14
1vcb_B	112	The Vhl-Elonginc-Elonginb Structure Length = 112		2e-14
1lm8_C	96	Structure Of A Hif-1a-Pvhl-Elonginb-Elonginc Comple		2e-14
1hv2_A	99	Solution Structure Of Yeast Elongin C In Complex Wi		2e-06

>pdb|4B9K|E Chain E, Pvhl-Elob-Eloc Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4- Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl) Pyrrolidine-2-Carboxamide Bound Length = 97

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 7  VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
          VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF 
Sbjct: 4  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 63
Query: 67 WSLQYS 72
          + ++Y+
Sbjct: 64 YKVRYT 69

>pdb|2C9W|C Chain C, Crystal Structure Of Socs-2 In Complex With Elongin-B And Elongin-C At 1.9a Resolution Length = 97

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 7  VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
          VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF 
Sbjct: 4  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 63
Query: 67 WSLQYS 72
          + ++Y+
Sbjct: 64 YKVRYT 69

>pdb|1VCB|B Chain B, The Vhl-Elonginc-Elonginb Structure Length = 112

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 7  VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
          VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF 
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
Query: 67 WSLQYS 72
          + ++Y+
Sbjct: 79 YKVRYT 84

>pdb|1LM8|C Chain C, Structure Of A Hif-1a-Pvhl-Elonginb-Elonginc Complex Length = 96

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 7  VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
          VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF 
Sbjct: 3  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 62
Query: 67 WSLQYS 72
          + ++Y+
Sbjct: 63 YKVRYT 68

>pdb|1HV2|A Chain A, Solution Structure Of Yeast Elongin C In Complex With A Von Hippel-Lindau Peptide Length = 99

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 4  EDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQ 63
          +D V L+S +  E+ IS+ AAM+S T++ M+  P  F E++ G +   +  + ILEK  +
Sbjct: 3  QDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGP--FRESK-GRIELKQFDSHILEKAVE 59
Query: 64 YFYWSLQYS 72
          Y  ++L+YS
Sbjct: 60 YLNYNLKYS 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	72
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	1e-26
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	7e-26
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	2e-21
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	2e-13
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	2e-10
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	9e-10
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	1e-08
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	5e-04

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Length = 112

 Score = 92.1 bits (229), Expect = 1e-26
 Identities = 32/70 (45%), Positives = 47/70 (67%)

Query: 3  KEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKIC 62
              VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C
Sbjct: 15 DAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVC 74

Query: 63 QYFYWSLQYS 72
           YF + ++Y+
Sbjct: 75 MYFTYKVRYT 84

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Length = 96

 Score = 90.2 bits (224), Expect = 7e-26
 Identities = 32/66 (48%), Positives = 47/66 (71%)

Query: 7  VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
          VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF 
Sbjct: 3  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 62

Query: 67 WSLQYS 72
          + ++Y+
Sbjct: 63 YKVRYT 68

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Length = 99

 Score = 78.6 bits (194), Expect = 2e-21
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 3  KEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKIC 62
           +D V L+S +  E+ IS+ AAM+S T++ M+  P   ++   G +   +  + ILEK  
Sbjct: 2  SQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESK---GRIELKQFDSHILEKAV 58

Query: 63 QYFYWSLQYS 72
          +Y  ++L+YS
Sbjct: 59 EYLNYNLKYS 68

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Length = 169

 Score = 52.1 bits (124), Expect = 2e-10
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 6  TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVT--FPEISTTILEKICQ 63
           V L+S EG  F + K+ A  S  ++N L   G   + +  E+    P + +++L+K+ +
Sbjct: 8  NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIE 67

Query: 64 YFYW 67
          +   
Sbjct: 68 WAEH 71

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Length = 160

 Score = 50.6 bits (120), Expect = 9e-10
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 4  EDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQ 63
             + L S++G  F + +  A+ SQTI +M+             V  P +++ IL K+ +
Sbjct: 3  AKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDC-----VDNGVPLPNVTSKILAKVIE 57

Query: 64 YFYWSLQYS 72
          Y    ++ +
Sbjct: 58 YCKRHVEAA 66

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Length = 141

 Score = 47.0 bits (111), Expect = 1e-08
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 6  TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYF 65
          ++KL S++G  F +  E A  S TI+ ML   G         V  P ++  IL+K+ Q+ 
Sbjct: 3  SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGM------DPVPLPNVNAAILKKVIQWC 56

Query: 66 YW 67
            
Sbjct: 57 TH 58

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256

 Score = 35.3 bits (82), Expect = 5e-04
 Identities = 6/36 (16%), Positives = 13/36 (36%)

Query: 31 RNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
          R  L       +    ++    IS  ++ +I  Y +
Sbjct: 58 RTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIF 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	72
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	99.95
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	99.95
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	99.95
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.93
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	99.92
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	99.88
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	99.86
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	99.86
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	98.36
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	98.18
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	98.13
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	98.1
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	98.01
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	97.99
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	97.96
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	97.86
2vpk_A	116	Myoneurin; transcription regulation, transcription	97.86
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	97.85
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	97.84
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	97.78
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	97.75
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	97.73
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	97.63
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	97.62
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	97.62
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	97.59
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	97.56
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	96.14

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=99.95  E-value=2.5e-28  Score=142.89  Aligned_cols=67  Identities=34%  Similarity=0.649  Sum_probs=60.8

Q ss_pred             CCCCceEEEEeCCCcEEEeeHHHHHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhhccC
Q 040934            1 MKKEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQY   71 (72)
Q Consensus         1 m~~~~~i~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~h~~y   71 (72)
                      |+ +++|+|+|+||++|+|++++|++|++|++|+++ + + ++..++||||+|++.+|+|||+||+||++|
T Consensus         1 m~-~~~v~L~SsDg~~f~V~~~vA~~S~~ik~ml~~-~-~-e~~~~~Iplp~V~~~iL~kVieyc~~h~~~   67 (99)
T 1hv2_A            1 MS-QDFVTLVSKDDKEYEISRSAAMISPTLKAMIEG-P-F-RESKGRIELKQFDSHILEKAVEYLNYNLKY   67 (99)
T ss_dssp             CC-CSEEEEEETTTEEEEEEHHHHTTCHHHHHHHHS-S-T-TTCTTEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             CC-CcEEEEEecCCCEEEECHHHHHHhHHHHHHHhc-c-c-ccCCCceecCCcCHHHHHHHHHHHHHhccc
Confidence            67 678999999999999999999999999999998 3 3 445678999999999999999999999865

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=99.95  E-value=2.7e-28  Score=145.58  Aligned_cols=69  Identities=46%  Similarity=0.850  Sum_probs=57.0

Q ss_pred             CCceEEEEeCCCcEEEeeHHHHHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhhccC
Q 040934            3 KEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQY   71 (72)
Q Consensus         3 ~~~~i~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~h~~y   71 (72)
                      ++++|+|+|+||++|+|++++|++|++|++|+++.+.+.|+.+++||||+|++.+|+|||+||+||++|
T Consensus        15 ~~~~v~L~SsDG~~F~V~~~~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~   83 (112)
T 1vcb_B           15 DAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRY   83 (112)
T ss_dssp             --CEEEEECTTSCEEEEEHHHHHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhc
Confidence            357899999999999999999999999999999877666666689999999999999999999999875

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=99.95  E-value=3.1e-28  Score=141.76  Aligned_cols=67  Identities=48%  Similarity=0.873  Sum_probs=56.3

Q ss_pred             ceEEEEeCCCcEEEeeHHHHHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhhccC
Q 040934            5 DTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQY   71 (72)
Q Consensus         5 ~~i~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~h~~y   71 (72)
                      ++|+|+|+||++|.|++++|++|++|++|+++.+.+.|+.+++||||+|++.+|+|||+||+||++|
T Consensus         1 ~~v~L~SsDg~~f~V~~~~A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~   67 (96)
T 2fnj_C            1 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRY   67 (96)
T ss_dssp             CEEEEECTTSCEEEEEHHHHTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEecCCCEEEeCHHHHHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHcccc
Confidence            4799999999999999999999999999999877666666789999999999999999999999865

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.93  E-value=1.2e-26  Score=134.79  Aligned_cols=66  Identities=48%  Similarity=0.901  Sum_probs=56.2

Q ss_pred             eEEEEeCCCcEEEeeHHHHHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhhccC
Q 040934            6 TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQY   71 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~h~~y   71 (72)
                      +|+|+|+||++|.|++.+|++|++||+|+++.+++.|+.+++||||+|++.+|+|||+||+||++|
T Consensus         3 ~v~L~SsDg~~F~v~r~vA~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~   68 (97)
T 4ajy_C            3 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRY   68 (97)
T ss_dssp             EEEEECTTCCEEEEEHHHHTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCcEEEecHHHHHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhccc
Confidence            799999999999999999999999999999877777777889999999999999999999999876

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=99.92  E-value=7.5e-26  Score=142.76  Aligned_cols=70  Identities=23%  Similarity=0.352  Sum_probs=56.9

Q ss_pred             CCCCceEEEEeCCCcEEEeeHHHHHHhHHHHHHhcCCCC--CCCCCCcccccCCCCHHHHHHHHHHHHhhccC
Q 040934            1 MKKEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGG--FAETEHGEVTFPEISTTILEKICQYFYWSLQY   71 (72)
Q Consensus         1 m~~~~~i~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~--~~e~~~~~Ipl~~v~~~~L~kVieyc~~h~~y   71 (72)
                      || +++|+|+|+||++|.|++++|++|++|++|+++.+.  +.++..++||||+|++.+|+|||+||+||++|
T Consensus         4 m~-~~~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~   75 (169)
T 3v7d_A            4 MV-TSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDS   75 (169)
T ss_dssp             ---CCEEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTC
T ss_pred             CC-CCeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccC
Confidence            66 579999999999999999999999999999998654  11223478999999999999999999999976

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=99.88  E-value=3.9e-23  Score=126.87  Aligned_cols=60  Identities=32%  Similarity=0.443  Sum_probs=55.8

Q ss_pred             eEEEEeCCCcEEEeeHHHHHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhhccC
Q 040934            6 TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQY   71 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~h~~y   71 (72)
                      .|+|+|+||++|.|++++|++|++|++|+++.+      +++||||+|++.+|+||++||+||+++
T Consensus         3 ~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~------~~~Ipl~~V~~~iL~kVieyc~~h~~~   62 (141)
T 1fs1_B            3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG------MDPVPLPNVNAAILKKVIQWCTHHKDD   62 (141)
T ss_dssp             EEEEECTTSCEEEEEGGGGGTCHHHHHHHHHTC------CSSEECTTCCHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcC------CCceecCCcCHHHHHHHHHHHHHhccC
Confidence            599999999999999999999999999999753      457999999999999999999999975

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=99.86  E-value=7.8e-24  Score=132.26  Aligned_cols=65  Identities=26%  Similarity=0.430  Sum_probs=29.9

Q ss_pred             CCCCceEEEEeCCCcEEEeeHHHHHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhhccC
Q 040934            1 MKKEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQY   71 (72)
Q Consensus         1 m~~~~~i~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~h~~y   71 (72)
                      |+ +++|+|+|+||++|.|++.+|++|++|++|+++.+     .+++||||+|++.+|+|||+||+||++|
T Consensus         1 ~~-~~~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~-----~~~~Ipl~~V~~~iL~kVieyc~~h~~~   65 (160)
T 2p1m_A            1 MS-AKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDC-----VDNGVPLPNVTSKILAKVIEYCKRHVEA   65 (160)
T ss_dssp             --------CCC---------CHHHHTCTTTC-----------------CCTTSCHHHHHHHHHC-------
T ss_pred             CC-CCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHccC-----CCCceeCCcCcHHHHHHHHHHHHHcccC
Confidence            45 56899999999999999999999999999999753     2568999999999999999999999865

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=98.36  E-value=1.8e-06  Score=49.06  Aligned_cols=59  Identities=17%  Similarity=0.277  Sum_probs=47.7

Q ss_pred             eEEEEeCCC---cEEEeeHHHH-HHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHh
Q 040934            6 TVKLISAEG---FEFVISKEAA-MVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYW   67 (72)
Q Consensus         6 ~i~L~S~Dg---~~f~v~~~~a-~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~   67 (72)
                      -|+|+..+|   +.|.+.+.++ ..|+.+++|+.+  .+.|.. ..|.||++++.+++.+++|++.
T Consensus        10 Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~--~~~e~~-~~i~l~~~~~~~f~~~l~~iYt   72 (109)
T 2vkp_A           10 DVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYG--DLAEVK-SEIHIPDVEPAAFLILLKYMYS   72 (109)
T ss_dssp             CEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC--------C-CEEEETTSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcC--CcccCC-CeEEeCCCCHHHHHHHHHHHcC
Confidence            588888886   9999999994 589999999985  345545 8899999999999999999975

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=98.18  E-value=8.9e-06  Score=47.02  Aligned_cols=59  Identities=22%  Similarity=0.297  Sum_probs=46.8

Q ss_pred             eEEEEeCCCcEEEeeHHH-HHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHh
Q 040934            6 TVKLISAEGFEFVISKEA-AMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYW   67 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~-a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~   67 (72)
                      -|+|+. +|+.|.+.+.+ +..|+.+++|+.+.  +.|.....|.|++++..+++.+++|++.
T Consensus        27 Dv~l~v-~~~~~~aHk~vLaa~S~~F~~~f~~~--~~e~~~~~i~l~~~~~~~f~~ll~~~Yt   86 (120)
T 2if5_A           27 DVVILV-EGREFPTHRSVLAACSQYFKKLFTSG--AVVDQQNVYEIDFVSAEALTALMDFAYT   86 (120)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHC-------CCSEEECCSSCHHHHHHHHHHHHH
T ss_pred             CeEEEE-CCEEEeHHHHHHHHhCHHHHHHhcCC--ccccCCceEEeCCCCHHHHHHHHHHHcC
Confidence            466665 68999999999 45799999999853  4455677899999999999999999975

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=98.13  E-value=1.1e-05  Score=48.93  Aligned_cols=60  Identities=18%  Similarity=0.321  Sum_probs=50.2

Q ss_pred             eEEEEeCCCcEEEeeHHH-HHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhh
Q 040934            6 TVKLISAEGFEFVISKEA-AMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWS   68 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~-a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~h   68 (72)
                      -|+|+. +|+.|.+.+.+ +..|+.+++|+...  +.|.....|.||+++..+++.+++|++..
T Consensus        36 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~--~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~   96 (172)
T 3htm_A           36 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHE--MEESKKNRVEINDVEPEVFKEMMCFIYTG   96 (172)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSC--CCGGGTTEEEECSSCHHHHHHHHHHHHHS
T ss_pred             ceEEEE-CCEEEEeeHHHHHHcCHHHHHHHccC--ccccCCCeEEecCCCHHHHHHHHHHHhCC
Confidence            366665 78999999999 46799999999953  45556788999999999999999999753

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=98.10  E-value=1e-05  Score=48.64  Aligned_cols=61  Identities=21%  Similarity=0.300  Sum_probs=47.0

Q ss_pred             eEEEEeCCCcEEEeeHHH-HHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHh
Q 040934            6 TVKLISAEGFEFVISKEA-AMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYW   67 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~-a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~   67 (72)
                      -|+|+. +|+.|.+.+.+ +..|+.+++|+.......+.....|.|++++..+++.+++|++-
T Consensus        49 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYt  110 (144)
T 2ppi_A           49 DAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFS  110 (144)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTT
T ss_pred             ceEEEE-CCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhC
Confidence            366665 68999999998 55799999999853221224567899999999999999999974

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=98.01  E-value=4e-05  Score=44.68  Aligned_cols=58  Identities=16%  Similarity=0.271  Sum_probs=48.2

Q ss_pred             eEEEEeCCCcEEEeeHHHH-HHhHHHHHHhcCCCCCCCCCCccccc-CCCCHHHHHHHHHHHHh
Q 040934            6 TVKLISAEGFEFVISKEAA-MVSQTIRNMLTSPGGFAETEHGEVTF-PEISTTILEKICQYFYW   67 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~e~~~~~Ipl-~~v~~~~L~kVieyc~~   67 (72)
                      -|+|+. +|+.|.+.+.++ ..|+.+++|+...  +.| ....|.| ++++..+++.+++|++.
T Consensus        31 Dv~l~v-~~~~~~aHk~iLaa~S~~F~~~f~~~--~~e-~~~~i~l~~~~~~~~f~~ll~~~Yt   90 (127)
T 1r29_A           31 DVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQ--LKR-NLSVINLDPEINPEGFNILLDFMYT   90 (127)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTST--TTT-TCSEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEE-CCEEEehHHHHHHHhCHHHHHHhcCC--ccC-CCCEEEeCCCCCHHHHHHHHHHHcC
Confidence            466665 589999999995 7899999999863  334 5677999 89999999999999975

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=97.99  E-value=9.9e-06  Score=47.84  Aligned_cols=60  Identities=17%  Similarity=0.301  Sum_probs=49.3

Q ss_pred             eEEEEeCCCcEEEeeHHHH-HHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhh
Q 040934            6 TVKLISAEGFEFVISKEAA-MVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWS   68 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~h   68 (72)
                      -|+|+. +|+.|.+.+.++ ..|+.++.|+...  +.|.....|.||+++..+++.+++|++..
T Consensus        27 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~--~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~   87 (145)
T 4eoz_A           27 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHE--MEESKKNRVEINDVEPEVFKEMMCFIYTG   87 (145)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSS--SHHHHHTEEEECSSCHHHHHHHHHHHHHS
T ss_pred             ceEEEE-CCEEEEeehHHHHHcCHHHHHHHcCC--CcCCCCceEEecCCCHHHHHHHHHhhccC
Confidence            366665 689999999995 6799999999853  44445678999999999999999999753

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=97.96  E-value=5.4e-05  Score=44.01  Aligned_cols=57  Identities=25%  Similarity=0.297  Sum_probs=47.1

Q ss_pred             eEEEEeCCCcEEEeeHHH-HHHhHHHHHHhcCCCCCCCCCCcccccCC-CCHHHHHHHHHHHHh
Q 040934            6 TVKLISAEGFEFVISKEA-AMVSQTIRNMLTSPGGFAETEHGEVTFPE-ISTTILEKICQYFYW   67 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~-a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~-v~~~~L~kVieyc~~   67 (72)
                      -|+|+. +|+.|.+.+.+ +..|+.+++|+.....    +...|.+|+ ++..+++.+++|++.
T Consensus        34 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~----e~~~i~l~~~~~~~~f~~~l~~iYt   92 (125)
T 3ohu_A           34 DVTLIV-ERKEFRAHRAVLAACSEYFWQALVGQTK----NDLVVSLPEEVTARGFGPLLQFAYT   92 (125)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTCCC----SSCEEECCTTCCHHHHHHHHHHHTT
T ss_pred             ceEEEE-CCEEEechHHHHHHcCHHHHHHhcCCCC----CCcEEEeCCCCCHHHHHHHHHhHcC
Confidence            366765 68999999999 5579999999986432    366799998 999999999999874

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=97.86  E-value=7.4e-05  Score=43.30  Aligned_cols=54  Identities=19%  Similarity=0.281  Sum_probs=46.0

Q ss_pred             eEEEEeCCCcEEEeeHHH-HHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHh
Q 040934            6 TVKLISAEGFEFVISKEA-AMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYW   67 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~-a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~   67 (72)
                      -|+|+. +|+.|.+.+.+ +..|+.+++|+.+.       ...|.|+++++.+++.+++|++.
T Consensus        30 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~-------~~~i~l~~~~~~~f~~ll~~~Yt   84 (121)
T 1buo_A           30 DVVIMV-DSQEFHAHRTVLACTSKMFEILFHRN-------SQHYTLDFLSPKTFQQILEYAYT   84 (121)
T ss_dssp             CEEEEE-SSCEEEECHHHHHHHCHHHHHHTTSC-------CSEEEECSSCHHHHHHHHHHHHH
T ss_pred             CEEEEE-CCEEEehhHHHHhhcCHHHHHHHcCC-------CcEEEeCCCCHHHHHHHHHhhcC
Confidence            466665 68999999999 57899999999852       45799999999999999999975

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=97.86  E-value=0.00012  Score=42.03  Aligned_cols=55  Identities=15%  Similarity=0.320  Sum_probs=44.0

Q ss_pred             eEEEEeCCCcEEEeeHHH-HHHhHHHHHHhcCCCCCCCCCCcccccC--CCCHHHHHHHHHHHHh
Q 040934            6 TVKLISAEGFEFVISKEA-AMVSQTIRNMLTSPGGFAETEHGEVTFP--EISTTILEKICQYFYW   67 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~-a~~S~~i~~~l~~~~~~~e~~~~~Ipl~--~v~~~~L~kVieyc~~   67 (72)
                      -|+|+. +|+.|.+.+.+ +..|+.++.|+...+      ...|.|+  ++++.+++.+++|++.
T Consensus        24 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~~------~~~i~l~~~~~~~~~f~~ll~~~Yt   81 (116)
T 2vpk_A           24 DCTIVI-GEFQFKAHRNVLASFSEYFGAIYRSTS------ENNVFLDQSQVKADGFQKLLEFIYT   81 (116)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCC------CSCEECCTTTCCHHHHHHHHHHHHH
T ss_pred             cEEEEE-CCEEEeccHHHHhhcCHHHHHHHcCCC------CCeEEeecCCCCHHHHHHHHHHHcC
Confidence            366665 68999999999 578999999998641      3345555  9999999999999975

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=97.85  E-value=5.8e-05  Score=43.71  Aligned_cols=55  Identities=20%  Similarity=0.285  Sum_probs=46.1

Q ss_pred             eEEEEeCCCcEEEeeHHH-HHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHh
Q 040934            6 TVKLISAEGFEFVISKEA-AMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYW   67 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~-a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~   67 (72)
                      -|+|+. +|+.|.+.+.+ +..|+.++.|+....      ...|.||++++.+++.+++|++.
T Consensus        26 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~------~~~i~l~~~~~~~f~~ll~~iYt   81 (119)
T 3b84_A           26 DATLDV-GGLVFKAHWSVLACCSHFFQSLYGDGS------GGSVVLPAGFAEIFGLLLDFFYT   81 (119)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTTT------CCCEEECGGGHHHHHHHHHHHHH
T ss_pred             ceEEEE-CCEEEEeeHHHHhhcCHHHHHHHCCCC------CCeEEeCCCCHHHHHHHHHHHcC
Confidence            366664 68999999998 567999999998632      56799999999999999999975

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=97.84  E-value=6.9e-05  Score=43.89  Aligned_cols=55  Identities=18%  Similarity=0.411  Sum_probs=46.4

Q ss_pred             eEEEEeCCCcEEEeeHHH-HHHhHHHHHHhcCCCCCCCCCCcccccC-CCCHHHHHHHHHHHHh
Q 040934            6 TVKLISAEGFEFVISKEA-AMVSQTIRNMLTSPGGFAETEHGEVTFP-EISTTILEKICQYFYW   67 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~-a~~S~~i~~~l~~~~~~~e~~~~~Ipl~-~v~~~~L~kVieyc~~   67 (72)
                      -|+|+. +|+.|.+.+.+ +..|+.+++|+...      ....|.|| ++++.+++.+++|++.
T Consensus        35 Dv~l~v-~~~~~~~Hk~vLaa~S~~F~~~f~~~------~~~~i~l~~~~~~~~f~~ll~~iYt   91 (129)
T 3ga1_A           35 DVSVVV-KGHAFKAHRAVLAASSSYFRDLFNNS------RSAVVELPAAVQPQSFQQILSFCYT   91 (129)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHBHHHHHHHHHC------CCSEEECCTTCCHHHHHHHHHHHHH
T ss_pred             ceEEEE-CCEEEEehHHHHHHcCHHHHHHHcCC------CCCEEEECCCCCHHHHHHHHHHHhC
Confidence            366665 79999999998 55799999999864      35679998 8999999999999975

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=97.78  E-value=4.4e-05  Score=45.24  Aligned_cols=56  Identities=20%  Similarity=0.268  Sum_probs=45.0

Q ss_pred             eEEEEeCCCcEEEeeHHH-HHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhh
Q 040934            6 TVKLISAEGFEFVISKEA-AMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWS   68 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~-a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~h   68 (72)
                      -|+|+. +|+.|.+.+.+ +..|..+++|+....      ...|.|++++..+++.+++|++.-
T Consensus        27 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~------~~~i~l~~~~~~~f~~lL~fiYtg   83 (135)
T 2yy9_A           27 DATLDV-GGLVFKAHWSVLACCSHFFQRIYGDGT------GGSVVLPAGFAEIFGLLLDFFYTG   83 (135)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHTCC----------CCEEECGGGHHHHHHHHHHHHHS
T ss_pred             ceEEEE-CCEEEehHHHHHHHhCHHHHHHHcCCC------CCeEEeCCCCHHHHHHHHHHHhCC
Confidence            366665 68999999998 667999999998531      456999999999999999999853

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=97.75  E-value=0.00012  Score=42.31  Aligned_cols=54  Identities=22%  Similarity=0.313  Sum_probs=45.7

Q ss_pred             eEEEEeCCCcEEEeeHHH-HHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHh
Q 040934            6 TVKLISAEGFEFVISKEA-AMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYW   67 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~-a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~   67 (72)
                      -|+|+. +|+.|.+.+.+ +..|+.+++|+...       ...|.|+++++.+++.+++|++-
T Consensus        33 Dv~l~v-~~~~f~aHk~vLaa~S~~F~~~f~~~-------~~~i~l~~~~~~~f~~~l~~~Yt   87 (116)
T 3fkc_A           33 DVTVIV-EDRKFRAHKNILSASSTYFHQLFSVA-------GQVVELSFIRAEIFAEILNYIYS   87 (116)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTSC-------CSEEEECSSCHHHHHHHHHHHTT
T ss_pred             eEEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC-------CCEEEeCCCCHHHHHHHHHhhcC
Confidence            366664 78999999999 57799999999853       45799999999999999999874

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=97.73  E-value=0.0001  Score=48.58  Aligned_cols=59  Identities=19%  Similarity=0.322  Sum_probs=47.2

Q ss_pred             eEEEEeCCCcEEEeeHHH-HHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHh
Q 040934            6 TVKLISAEGFEFVISKEA-AMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYW   67 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~-a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~   67 (72)
                      -|+|.. +|+.|.+.+.+ |.+|+.+++|+..  .+.|.....|.|+++++.+++.+++|++.
T Consensus       176 Dv~l~v-~~~~f~~Hk~vLaa~S~~F~~~f~~--~~~e~~~~~i~l~~~~~~~f~~~L~~iYt  235 (312)
T 3hqi_A          176 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEH--EMEESKKNRVEINDVEPEVFKEMMCFIYT  235 (312)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTC-------CCSEEEECSSCHHHHHHHHHHHHH
T ss_pred             ceEEEE-CCEEEeHHHHHHHHcCHHHHHHhcc--CccccCCceEEecCCCHHHHHHHHHhhcC
Confidence            466665 78999999999 5779999999985  35566678899999999999999999975

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=97.63  E-value=8.8e-05  Score=47.78  Aligned_cols=61  Identities=20%  Similarity=0.280  Sum_probs=44.0

Q ss_pred             eEEEEeCCCcEEEeeHHHHH-HhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHh
Q 040934            6 TVKLISAEGFEFVISKEAAM-VSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYW   67 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~   67 (72)
                      -|+|.. +|+.|.+.+.++. .|+.++.|+.......|.....|+++++++.+++.+++|++.
T Consensus        33 Dv~l~v-~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt   94 (256)
T 3hve_A           33 DAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFS   94 (256)
T ss_dssp             CEEEEE-TTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHH
T ss_pred             ceEEEE-CCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccC
Confidence            466665 6899999999955 699999999853221234567899999999999999999975

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=97.62  E-value=0.00036  Score=41.23  Aligned_cols=57  Identities=23%  Similarity=0.343  Sum_probs=46.2

Q ss_pred             eEEEEeCCCcEEEeeHHH-HHHhHHHHHHhcCCCCCCCCCCcccccC-CCCHHHHHHHHHHHHh
Q 040934            6 TVKLISAEGFEFVISKEA-AMVSQTIRNMLTSPGGFAETEHGEVTFP-EISTTILEKICQYFYW   67 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~-a~~S~~i~~~l~~~~~~~e~~~~~Ipl~-~v~~~~L~kVieyc~~   67 (72)
                      -|+|+. +|+.|.+.+.+ +..|+.++.|+....  .  +...|.+| +++...++.+++|++.
T Consensus        38 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~--~--e~~~i~l~~~v~~~~~~~lL~~~Yt   96 (138)
T 2z8h_A           38 DVTVLV-EGQRFRAHRSVLAACSSYFHSRIVGQT--D--AELTVTLPEEVTVKGFEPLIQFAYT   96 (138)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCC--C--TTEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEE-CCEEEechHHHHHHcCHHHHHHHhcCC--C--CCceEEeCCCCCHHHHHHHHHHhcC
Confidence            366665 58999999999 467999999998642  2  24578886 8999999999999975

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=97.62  E-value=0.00032  Score=40.80  Aligned_cols=57  Identities=21%  Similarity=0.347  Sum_probs=45.0

Q ss_pred             eEEEEeCCCcEEEeeHHH-HHHhHHHHHHhcCCCCCCCCCCcccccC-CCCHHHHHHHHHHHHh
Q 040934            6 TVKLISAEGFEFVISKEA-AMVSQTIRNMLTSPGGFAETEHGEVTFP-EISTTILEKICQYFYW   67 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~-a~~S~~i~~~l~~~~~~~e~~~~~Ipl~-~v~~~~L~kVieyc~~   67 (72)
                      -|+|+. +|+.|.+.+.+ +..|+.+++|+.+..  .  +...|.+| +++...++.+++|++.
T Consensus        31 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~mf~~~~--~--e~~~i~l~~~v~~~~f~~lL~~iYt   89 (124)
T 2ihc_A           31 DVTIFV-EGQRFRAHRSVLAACSSYFHSRIVGQA--D--GELNITLPEEVTVKGFEPLIQFAYT   89 (124)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTC-------CEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEE-CCEEEecHHHHHHHcCHHHHHHHcCCC--C--CCceEeecCCcCHHHHHHHHHHhcC
Confidence            366665 58999999999 567999999998642  2  24568886 8999999999999975

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=97.59  E-value=0.00024  Score=41.01  Aligned_cols=54  Identities=15%  Similarity=0.293  Sum_probs=45.3

Q ss_pred             eEEEEeCCCcEEEeeHHH-HHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHh
Q 040934            6 TVKLISAEGFEFVISKEA-AMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYW   67 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~-a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~   67 (72)
                      -|+|+. +|+.|.+.+.+ +..|+.+++|+.+.       ...|.+++++..+++.+++|++.
T Consensus        29 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~-------~~~i~l~~~~~~~f~~ll~~~Yt   83 (119)
T 2q81_A           29 DCTFVV-DGVHFKAHKAVLAACSEYFKMLFVDQ-------KDVVHLDISNAAGLGQVLEFMYT   83 (119)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHC-------CSGGGGGGCCHHHHHHHHHHHHH
T ss_pred             ceEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC-------CCEEEeCCCCHHHHHHHHHHHcC
Confidence            466664 68999999999 55799999999852       45688999999999999999975

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=97.56  E-value=6.7e-05  Score=48.96  Aligned_cols=60  Identities=20%  Similarity=0.375  Sum_probs=43.5

Q ss_pred             eEEEEeC--CCcEEEeeHHHHH-HhHHHHHHhcCCCCCCCCCCcccccC------CCCHHHHHHHHHHHHh
Q 040934            6 TVKLISA--EGFEFVISKEAAM-VSQTIRNMLTSPGGFAETEHGEVTFP------EISTTILEKICQYFYW   67 (72)
Q Consensus         6 ~i~L~S~--Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~e~~~~~Ipl~------~v~~~~L~kVieyc~~   67 (72)
                      -|+|+..  ||+.|.+.+.++. .|+.++.|+.+  ++.|.....|.|+      ++++.+++.+++|++.
T Consensus        34 Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~--~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Yt  102 (279)
T 3i3n_A           34 DITLCFGGAGGREFRAHRSVLAAATEYFTPLLSG--QFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYT  102 (279)
T ss_dssp             CEEEECC----CEEEECHHHHHHHCTTSGGGCCC----------EEECCCCSSTTCSCHHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcC--CCccccCCeEEeccccccCCCCHHHHHHHHHhhCc
Confidence            4677765  7999999999954 69999999975  3556567789998      8999999999999975

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=96.14  E-value=0.0028  Score=36.77  Aligned_cols=50  Identities=16%  Similarity=0.119  Sum_probs=39.3

Q ss_pred             eEEEEeCCCcEEEeeHHHHH-HhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHh
Q 040934            6 TVKLISAEGFEFVISKEAAM-VSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYW   67 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~   67 (72)
                      -|+|+. +|+.|.+.+.++. .|..++.           ....|.|++|++.+++.+++|++.
T Consensus        32 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~-----------~~~~i~l~~v~~~~f~~ll~fiYt   82 (119)
T 3m5b_A           32 DTLITV-GSQEFPAHSLVLAGVSQQLGR-----------RGQWALGEGISPSTFAQLLNFVYG   82 (119)
T ss_dssp             CEEEEE-TTEEEEECHHHHHTTCGGGCC-----------CEEEECCSSCCHHHHHHHHHHHTT
T ss_pred             ceEEEE-CCEEEeeEHHHHHHcCHHHhc-----------CCCEEEeCCCCHHHHHHHHHHHcC
Confidence            366665 7999999999954 4666552           245689999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	72
d2c9wc1	96	d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens	9e-22
d1nexa2	72	d.42.1.1 (A:4-103) Centromere DNA-binding protein	2e-17
d1hv2a_	99	d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomy	3e-17
d1fs1b2	61	d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Sk	3e-15

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (194), Expect = 9e-22
 Identities = 32/66 (48%), Positives = 47/66 (71%)

Query: 7  VKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFY 66
          VKLIS++G EF++ +E A+ S TI+ ML+ PG FAE E  EV F EI + +L K+C YF 
Sbjct: 3  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 62

Query: 67 WSLQYS 72
          + ++Y+
Sbjct: 63 YKVRYT 68

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.8 bits (163), Expect = 2e-17
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 6  TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPG--GFAETEHGEVTFPEISTTILEKICQ 63
           V L+S EG  F + K+ A  S  ++N L   G     + +   +  P + +++L+K+ +
Sbjct: 2  NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIE 61

Query: 64 YFYW 67
          +   
Sbjct: 62 WAEH 65

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 99

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.1 bits (164), Expect = 3e-17
 Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 4  EDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQ 63
          +D V L+S +  E+ IS+ AAM+S T++ M+  P   ++   G +   +  + ILEK  +
Sbjct: 3  QDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESK---GRIELKQFDSHILEKAVE 59

Query: 64 YFYWSLQYS 72
          Y  ++L+YS
Sbjct: 60 YLNYNLKYS 68

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (148), Expect = 3e-15
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 6  TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYF 65
          ++KL S++G  F +  E A  S TI+ ML   G         V  P ++  IL+K+ Q+ 
Sbjct: 2  SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGM------DPVPLPNVNAAILKKVIQWC 55

Query: 66 Y 66
           
Sbjct: 56 T 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	72
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	99.95
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	99.95
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	99.94
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	98.02
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	97.89
d1xb4a1	124	Vacuolar protein sorting-associated protein VPS25	82.28
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	81.21

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.4e-29  Score=137.78  Aligned_cols=66  Identities=23%  Similarity=0.357  Sum_probs=53.1

Q ss_pred             eEEEEeCCCcEEEeeHHHHHHhHHHHHHhcCCCCCCC--CCCcccccCCCCHHHHHHHHHHHHhhccC
Q 040934            6 TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAE--TEHGEVTFPEISTTILEKICQYFYWSLQY   71 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~e--~~~~~Ipl~~v~~~~L~kVieyc~~h~~y   71 (72)
                      +|+|+|+||++|.|++++|++|++|++||++.+...+  .+..+||||+|++.+|+|||+||+||++.
T Consensus         2 ~I~L~SsDg~~F~v~~~~a~~S~tIk~ml~~~~~~~~~~~~~~~Ipl~~V~s~iL~kVieyc~~H~~d   69 (72)
T d1nexa2           2 NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDS   69 (72)
T ss_dssp             EEEEECTTSCEEEEEHHHHTTSHHHHHTC-------------CEEECTTCCHHHHHHHHHHHHHTTTC
T ss_pred             eeEEEeCCCCEEEecHHHHHHHHHHHHHHHhcCccccccCCCCcccCCCcCHHHHHHHHHHHHHccCC
Confidence            6999999999999999999999999999998764332  34568999999999999999999999975

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.5e-29  Score=143.66  Aligned_cols=67  Identities=48%  Similarity=0.895  Sum_probs=53.2

Q ss_pred             eEEEEeCCCcEEEeeHHHHHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhhccCC
Q 040934            6 TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQYS   72 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~h~~y~   72 (72)
                      +|+|+|+||.+|.|++++|++|++||+|+++.+.+.++.+++||||+|+|.+|+||+|||+||++|.
T Consensus         2 ~i~L~SsDg~~f~V~~~~A~~S~tI~~ml~~~~~~~e~~~~~IpL~nV~s~iL~kViey~~~h~~~~   68 (96)
T d2c9wc1           2 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYT   68 (96)
T ss_dssp             EEEEECTTCCEEEEEHHHHTTSHHHHHC------------CEEECTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEcCCCCEEEeeHHHHHHhHHHHHHHhccCccccCCCCeeECCCCCHHHHHHHHHHHHhhccCc
Confidence            6999999999999999999999999999998777777778899999999999999999999999874

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-28  Score=131.73  Aligned_cols=59  Identities=32%  Similarity=0.466  Sum_probs=55.1

Q ss_pred             eEEEEeCCCcEEEeeHHHHHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhhcc
Q 040934            6 TVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQ   70 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~h~~   70 (72)
                      .|+|+|+||++|.|++++|++|++|++|+++.+      .++||||+|++.+|+||+|||+||++
T Consensus         2 ~I~L~SsDg~~f~v~~~~a~~S~tI~~ml~~~~------~~~Ipl~~V~s~iL~kVieyc~~H~~   60 (61)
T d1fs1b2           2 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG------MDPVPLPNVNAAILKKVIQWCTHHKD   60 (61)
T ss_dssp             EEEEECTTSCEEEEEGGGGGTCHHHHHHHHHTC------CSSEECTTCCHHHHHHHHHHHHHHTT
T ss_pred             eEEEEecCCCEEEecHHHHHHhHHHHHHHhcCC------CCCcccCCcCHHHHHHHHHHHHHccC
Confidence            699999999999999999999999999999753      45799999999999999999999986

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=5e-28  Score=140.11  Aligned_cols=67  Identities=36%  Similarity=0.646  Sum_probs=60.4

Q ss_pred             CCCCceEEEEeCCCcEEEeeHHHHHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhhccC
Q 040934            1 MKKEDTVKLISAEGFEFVISKEAAMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYWSLQY   71 (72)
Q Consensus         1 m~~~~~i~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~h~~y   71 (72)
                      || +.+|+|+|+||.+|.|++++|++|++|++|+++.+.  + .+++||||+|+|.+|+|||+||+||++|
T Consensus         1 m~-~~~v~L~SsDg~~f~V~~~~A~~S~tI~~ml~~~~~--e-~~~~Ipl~~V~s~iL~kViey~~~h~~~   67 (99)
T d1hv2a_           1 MS-QDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFR--E-SKGRIELKQFDSHILEKAVEYLNYNLKY   67 (99)
T ss_dssp             CC-CSEEEEEETTTEEEEEEHHHHTTCHHHHHHHHSSTT--T-CTTEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             CC-CCeEEEEcCCCCEEEeeHHHHHHhHHHHHHHHccCC--C-CcCccccCCCChHHHHHHHHHHHHhhhC
Confidence            67 669999999999999999999999999999997543  2 3568999999999999999999999876

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.7e-05  Score=45.06  Aligned_cols=59  Identities=15%  Similarity=0.156  Sum_probs=47.0

Q ss_pred             eEEEEeCCCcEEEeeHHHH-HHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHh
Q 040934            6 TVKLISAEGFEFVISKEAA-MVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYW   67 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~   67 (72)
                      -++|+. +|++|.+.+.++ ..|+.+++|+.+.  +.++....+-++++++..++.+++|++-
T Consensus        27 Dv~l~v-~~~~~~~Hk~vLa~~S~~F~~~f~~~--~~e~~~~~~~~~~v~~~~f~~ll~~~Yt   86 (122)
T d1r29a_          27 DVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQ--LKRNLSVINLDPEINPEGFNILLDFMYT   86 (122)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTST--TTTTCSEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEE-CCEEEEEehHHhhhCCHHHHHHhccc--hhhhcceeeeecccCHHHHHHHHhhhcC
Confidence            366774 788999999995 5799999999753  3444455566789999999999999974

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=3e-05  Score=44.23  Aligned_cols=54  Identities=19%  Similarity=0.281  Sum_probs=45.3

Q ss_pred             eEEEEeCCCcEEEeeHHH-HHHhHHHHHHhcCCCCCCCCCCcccccCCCCHHHHHHHHHHHHh
Q 040934            6 TVKLISAEGFEFVISKEA-AMVSQTIRNMLTSPGGFAETEHGEVTFPEISTTILEKICQYFYW   67 (72)
Q Consensus         6 ~i~L~S~Dg~~f~v~~~~-a~~S~~i~~~l~~~~~~~e~~~~~Ipl~~v~~~~L~kVieyc~~   67 (72)
                      -++|.. +|++|.+.+.+ |..|+.+++++.+.       ...|.+|++++.+++.+++|++.
T Consensus        30 Dv~l~v-~~~~~~aHk~vLaa~S~~F~~lf~~~-------~~~i~~~~v~~~~f~~ll~~~Yt   84 (121)
T d1buoa_          30 DVVIMV-DSQEFHAHRTVLACTSKMFEILFHRN-------SQHYTLDFLSPKTFQQILEYAYT   84 (121)
T ss_dssp             CEEEEE-SSCEEEECHHHHHHHCHHHHHHTTSC-------CSEEEECSSCHHHHHHHHHHHHH
T ss_pred             eEEEEE-CCEEEEEEHHHhcccChhhhhhccCc-------cceeecCCCCHHHHHHHHHheEc
Confidence            366765 78899999998 67899999999742       44689999999999999999974

>d1xb4a1 a.4.5.54 (A:2-125) Vacuolar protein sorting-associated protein VPS25 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Vacuolar sorting protein domain
domain: Vacuolar protein sorting-associated protein VPS25
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.28  E-value=0.31  Score=27.51  Aligned_cols=13  Identities=23%  Similarity=0.233  Sum_probs=11.2

Q ss_pred             HHHHHHHHhhccC
Q 040934           59 EKICQYFYWSLQY   71 (72)
Q Consensus        59 ~kVieyc~~h~~y   71 (72)
                      ..|++||.||+-|
T Consensus        31 ~LIL~ycr~~k~~   43 (124)
T d1xb4a1          31 DIISQYCKTKKIW   43 (124)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhcee
Confidence            5689999999876

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.21  E-value=0.12  Score=21.96  Aligned_cols=11  Identities=27%  Similarity=0.465  Sum_probs=8.7

Q ss_pred             HHHHHhhccCC
Q 040934           62 CQYFYWSLQYS   72 (72)
Q Consensus        62 ieyc~~h~~y~   72 (72)
                      -+|+.||++|+
T Consensus        15 rqylnhh~kyq   25 (30)
T d2dlka1          15 RQYLNHHKKYQ   25 (30)
T ss_dssp             HHHHHHHHHHG
T ss_pred             HHHHHhHHHHH
Confidence            37899998875