Citrus Sinensis ID: 040945

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MGMGVKQLVVGLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MGMGVKQLVVGLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLsfflnrknrppltFALLCKVFILSLIGITLMQICVYtgvsfssptlasatnnlIPAFTFLLAVIF
Flexible Loop (DISEMBL)
MGMGVKQLVVGLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF
Low Complexity Region (SEG)
MGMGVKQLVVGLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF
Disordered region (IsUnstruct)
****VKQLVVGLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVI*
Disordered Region (DISOPRED)
*************PYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF
Disordered Region (DISEMBL)
MGMGVKQLVVGLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF
Disordered Region (DISPRO)
****VKQLVVGLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGMGVKQLVVGLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
Q945L4	339	WAT1-related protein At5g	yes	no	0.864	0.318	0.509	3e-22
Q8GXB4	374	WAT1-related protein At1g	no	no	0.912	0.304	0.447	1e-19
Q9FL08	368	WAT1-related protein At5g	no	no	0.952	0.323	0.462	2e-19
Q9FL41	402	WAT1-related protein At5g	no	no	0.896	0.278	0.383	2e-19
F4KHA8	370	WAT1-related protein At5g	no	no	0.896	0.302	0.474	9e-19
F4HZQ7	389	WAT1-related protein At1g	no	no	0.976	0.313	0.384	9e-18
O80638	374	WAT1-related protein At2g	no	no	0.896	0.299	0.357	2e-17
Q94JU2	367	WAT1-related protein At3g	no	no	0.968	0.329	0.448	7e-17
F4I5D5	375	WAT1-related protein At1g	no	no	0.976	0.325	0.36	9e-17
Q94AP3	389	Protein WALLS ARE THIN 1	no	no	0.88	0.282	0.409	2e-16

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/110 (50%), Positives = 78/110 (70%), Gaps = 2/110 (1%)

Query: 17  AMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNR-KNRPPLTFA 75
           AMV  +   VG+ TL KAA S+G +P ++ VY+    SL+LLPL+FF  R ++ PPLTF+
Sbjct: 16  AMVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFSFRSRSLPPLTFS 75

Query: 76  LLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125
           +LC + IL LI  +  QI  Y G+ +SSPTL+SA +N+ PAFTF+LAV+F
Sbjct: 76  ILCNMGILGLIA-SAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVF 124

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXB4|WTR2_ARATH WAT1-related protein At1g09380 OS=Arabidopsis thaliana GN=At1g09380 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 69/114 (60%)

Query: 12  LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPP 71
           ++P+ AMV VQ    G+   SK A+  G  PLIL  Y    A++   P++FFL RK RP 
Sbjct: 6   MLPFLAMVLVQIGYAGMNITSKMAMEAGMKPLILVAYRQIFATIATFPVAFFLERKTRPK 65

Query: 72  LTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125
           +T  +L +VF  S+ G T  Q+  + G+  SSPT+A A  NL+PA TFLLA IF
Sbjct: 66  ITLRILVQVFFCSITGATGNQVLYFVGLQNSSPTIACALTNLLPAVTFLLAAIF 119

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/121 (46%), Positives = 75/121 (61%), Gaps = 2/121 (1%)

Query: 6   KQLVVGLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLN 65
           K     +VP+AAM AV+C  VG  TL KAA  +G +  +   Y+  +++L+LLPLS    
Sbjct: 12  KYFTRDVVPFAAMFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVSTLLLLPLSVIFG 71

Query: 66  RKNR-PPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVI 124
           R  R P     L  K+F+L L+G  + QI    G+++SSPTLASA +NL PAFTF LAVI
Sbjct: 72  RSRRLPAAKSPLFFKIFLLGLVGF-MSQIAGCKGIAYSSPTLASAISNLTPAFTFTLAVI 130

Query: 125 F 125
           F
Sbjct: 131 F 131

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 75/112 (66%)

Query: 14  PYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLT 73
           PY AM+++Q    G+  ++K +++ G +  +L VY  AIA+ ++ P +FF  RK +P +T
Sbjct: 18  PYFAMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQPKIT 77

Query: 74  FALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125
           F++  ++FIL L+G  + Q   Y G+ ++SPT + A +N++PA TF+LAV+F
Sbjct: 78  FSIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLF 129

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 75/116 (64%), Gaps = 4/116 (3%)

Query: 12  LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNR-P 70
           +VP+ AMVAV+CV VG  TL KAA  +G +  +   Y   +A+L+LLPLS    R  R P
Sbjct: 19  VVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKRLP 78

Query: 71  PLTFALLCKVFILSLIG-ITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125
                +   +F+L+L+G ++L+  C   G+ +SSPTLASA +NL PAFTF LAVIF
Sbjct: 79  SAKTPVFFNIFLLALVGFMSLIVGC--KGIEYSSPTLASAISNLTPAFTFTLAVIF 132

Arabidopsis thaliana (taxid: 3702)

>sp|F4HZQ7|WTR5_ARATH WAT1-related protein At1g21890 OS=Arabidopsis thaliana GN=At1g21890 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 75/125 (60%), Gaps = 3/125 (2%)

Query: 1   MGMGVKQLVVGLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPL 60
           MG G   L+  L PY AM+++Q    G+  ++  ++  G    +LAVY  AIA+ ++ P 
Sbjct: 1   MGRG---LMNSLKPYLAMISMQFGYAGMYIITMVSLKHGMNHYVLAVYRHAIATAVIAPF 57

Query: 61  SFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFL 120
           + F  RK RP +TF +  ++ +L  I   L Q   Y G++++S T ASAT N++PA TF+
Sbjct: 58  ALFHERKIRPKMTFRIFLQIALLGFIEPVLDQNLYYVGMTYTSATFASATANVLPAITFV 117

Query: 121 LAVIF 125
           LA+IF
Sbjct: 118 LAIIF 122

Arabidopsis thaliana (taxid: 3702)

>sp|O80638|WTR14_ARATH WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 74/112 (66%)

Query: 14  PYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLT 73
           P+  +V++Q    G++ ++K A++QG +P +LA Y   +A++ + P ++FL+RK RP +T
Sbjct: 8   PFITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKIRPKMT 67

Query: 74  FALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125
            ++  K+ +L L+  T+ Q   YTG+ ++S T  +A  N++PAF F++A IF
Sbjct: 68  LSIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIF 119

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 83/125 (66%), Gaps = 4/125 (3%)

Query: 3   MGVKQLVVGLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSF 62
           M  K     ++P  A+V ++C  VG+ TL KAA  +G +  +  VY+  +A+L+LLP S 
Sbjct: 1   MARKYFQREVLPVTALVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLP-SL 59

Query: 63  FLNRKNR--PPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFL 120
           F + ++R  PP+ F++L K+ +L +IG     I  YTG+++SSPTLASA +NL PAFTFL
Sbjct: 60  FCSFRSRTLPPMNFSILYKIVLLGIIG-CCSNIMGYTGINYSSPTLASAISNLTPAFTFL 118

Query: 121 LAVIF 125
           LAV+F
Sbjct: 119 LAVVF 123

Arabidopsis thaliana (taxid: 3702)

>sp|F4I5D5|WTR11_ARATH WAT1-related protein At1g70260 OS=Arabidopsis thaliana GN=At1g70260 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 3/125 (2%)

Query: 3   MGVKQLVVGLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSF 62
           M VK     LVP+ AM  ++   + +T ++K A++ G +P +  VY +A  S++LLP SF
Sbjct: 1   MEVKVRRDELVPFVAMAIMEACTIALTIMAKTALTGGMSPFVFVVYTNAFGSILLLPFSF 60

Query: 63  FLNRKNRPP---LTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTF 119
             +R  R      ++ LL +VF L   GI + Q   + G+ FSSP +  A    IP+F+F
Sbjct: 61  LFHRNERTEQSIFSWPLLVRVFFLGFTGIFMFQNLAFVGLRFSSPIVVCAMGLQIPSFSF 120

Query: 120 LLAVI 124
           LL++I
Sbjct: 121 LLSII 125

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1 OS=Arabidopsis thaliana GN=WAT1 PE=1 SV=1

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 68/110 (61%)

Query: 15  YAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTF 74
           + AM+ +Q    G   +S+AA++ G + L+  VY + IA L+LLP ++FL +K RP +T 
Sbjct: 21  HIAMLTLQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLPFAYFLEKKERPAITL 80

Query: 75  ALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVI 124
             L + F L+LIGIT  Q     G+  +SPT AS+  N +PA TFL+A +
Sbjct: 81  NFLIQFFFLALIGITANQGFYLLGLDNTSPTFASSMQNSVPAITFLMAAL 130

Required for secondary wall formation in fibers, especially in short days conditions. Promotes indole metabolism and transport (e.g. tryptophan, neoglucobrassicin and auxin (indole-3-acetic acid)). May prevent salicylic-acid (SA) accumulation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
224135771	355	predicted protein [Populus trichocarpa]	0.976	0.343	0.642	4e-37
225457103	362	PREDICTED: auxin-induced protein 5NG4-li	0.984	0.339	0.634	1e-36
357477327	353	Auxin-induced protein 5NG4 [Medicago tru	0.984	0.348	0.564	3e-32
297733820	338	unnamed protein product [Vitis vinifera]	0.968	0.357	0.586	5e-32
359491260	359	PREDICTED: LOW QUALITY PROTEIN: auxin-in	0.848	0.295	0.594	2e-27
356565026	565	PREDICTED: auxin-induced protein 5NG4-li	0.832	0.184	0.527	4e-25
224099697	355	predicted protein [Populus trichocarpa]	0.896	0.315	0.517	1e-23
255581160	356	Auxin-induced protein 5NG4, putative [Ri	0.904	0.317	0.491	2e-23
357463769	345	Auxin-induced protein 5NG4 [Medicago tru	0.896	0.324	0.495	3e-23
388505090	173	unknown [Medicago truncatula]	0.896	0.647	0.495	4e-23

>gi|224135771|ref|XP_002322156.1| predicted protein [Populus trichocarpa] gi|222869152|gb|EEF06283.1| predicted protein [Populus trichocarpa]

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 79/123 (64%), Positives = 102/123 (82%), Gaps = 1/123 (0%)

Query: 3   MGVKQLVVGLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSF 62
           MGVK +++ L+P+AAMV V+C+ VG+TTLSKAA+S+G +  +  VY++A+A+LILLP S 
Sbjct: 1   MGVKSVLLNLLPFAAMVMVECLDVGLTTLSKAAMSKGMSQFVFVVYSNALATLILLP-SL 59

Query: 63  FLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLA 122
              R  RPP+T++LLCK F+LSL+GITLMQ CV+TGVS+SSPTLASA   LIPAFTFLLA
Sbjct: 60  IFYRTKRPPVTYSLLCKFFLLSLVGITLMQNCVFTGVSYSSPTLASAMGQLIPAFTFLLA 119

Query: 123 VIF 125
           VIF
Sbjct: 120 VIF 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457103|ref|XP_002283377.1| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/123 (63%), Positives = 96/123 (78%)

Query: 3   MGVKQLVVGLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSF 62
           MGVK  + G+VP AAMV V+C+ VG+TTLSKAA+S+G    +  VY++A ASLIL  +SF
Sbjct: 1   MGVKAWLSGMVPIAAMVTVECLDVGLTTLSKAAMSRGMDRFVFVVYSNAFASLILFSISF 60

Query: 63  FLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLA 122
              R  RPPL+F+LLCK F+LSL GIT+MQ CV+TGVS+ SPTL SA +NLIPAFTFLLA
Sbjct: 61  IFLRTKRPPLSFSLLCKFFLLSLAGITVMQNCVFTGVSYGSPTLGSAMSNLIPAFTFLLA 120

Query: 123 VIF 125
           V F
Sbjct: 121 VAF 123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477327|ref|XP_003608949.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355510004|gb|AES91146.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/124 (56%), Positives = 95/124 (76%), Gaps = 1/124 (0%)

Query: 3   MGVKQLVVGLVPYAAMVAVQCVQVGITTLSKAAIS-QGATPLILAVYADAIASLILLPLS 61
           M VK+ ++  +P+AAMV V+C+ VG+TTLSK A+S +G    I  +Y++A+A+ ILLP  
Sbjct: 1   MEVKRYLLECIPFAAMVIVECLDVGLTTLSKEAMSTKGMNHFIFVLYSNALATFILLPSY 60

Query: 62  FFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLL 121
           F +NR  RPPL+F+LL K F L L+GIT+MQ CV+TG+S+SSPTL SA +NL PA TF+L
Sbjct: 61  FLINRTTRPPLSFSLLAKFFFLGLVGITIMQNCVFTGISYSSPTLGSAMSNLTPAITFVL 120

Query: 122 AVIF 125
           AVIF
Sbjct: 121 AVIF 124

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733820|emb|CBI15067.3| unnamed protein product [Vitis vinifera]

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 90/121 (74%)

Query: 3   MGVKQLVVGLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSF 62
           MG+K  + G+VP AAMV ++C+ VG+ TLSKAA+S+G    +  VY +A+ASLI   LSF
Sbjct: 1   MGMKAWLSGIVPIAAMVMMECLDVGLVTLSKAAMSRGMNHFVFVVYYNALASLIFFLLSF 60

Query: 63  FLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLA 122
             +R  RPPLTF+  CK F+L L GIT+MQ  V+TGVS+SSPTL  A +NLIPAFTFLLA
Sbjct: 61  IFHRTKRPPLTFSHFCKFFLLGLPGITVMQNWVFTGVSYSSPTLCYAMSNLIPAFTFLLA 120

Query: 123 V 123
           V
Sbjct: 121 V 121

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491260|ref|XP_003634251.1| PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 79/106 (74%)

Query: 18  MVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALL 77
           MV ++C+ VG+ TLSKAA+S+G    +  VY +A+ASLI   LSF  +R  RPPLTF+  
Sbjct: 1   MVMMECLDVGLVTLSKAAMSRGMNHFVFVVYYNALASLIFFLLSFIFHRTKRPPLTFSHF 60

Query: 78  CKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAV 123
           CK F+L L GIT+MQ  V+TGVS+SSPTL  A +NLIPAFTFLLAV
Sbjct: 61  CKFFLLGLPGITVMQNWVFTGVSYSSPTLCYAMSNLIPAFTFLLAV 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565026|ref|XP_003550746.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 83/110 (75%), Gaps = 6/110 (5%)

Query: 14  PYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLT 73
           P+ AMV V+C+ VG++TLSKAA+S+G    +L VY++ +A+L+LLP S       RP L+
Sbjct: 230 PFIAMVTVECLNVGLSTLSKAAMSRGVNHFVLVVYSNVLATLLLLPSS------TRPSLS 283

Query: 74  FALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAV 123
           F+LLCK F+L ++GIT+MQ CV+ G+++SSPTL S  +NL PA TF+LAV
Sbjct: 284 FSLLCKFFLLGILGITVMQNCVFIGINYSSPTLGSTMSNLSPAITFVLAV 333

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099697|ref|XP_002311582.1| predicted protein [Populus trichocarpa] gi|222851402|gb|EEE88949.1| predicted protein [Populus trichocarpa]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/116 (51%), Positives = 77/116 (66%), Gaps = 4/116 (3%)

Query: 14  PYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLT 73
           P+  MV  +C QVG+  LSKAA+S G T  I  +Y++A+ASLILLP SFFL+R  RPPLT
Sbjct: 8   PFVGMVMAECAQVGLMILSKAAMSDGMTNFIFVLYSNALASLILLPSSFFLHRSERPPLT 67

Query: 74  FALLCKVFILSLIGITLMQ----ICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125
           F +LC  F+L L G  ++     I  Y G++ SS TL +A  NLIP  TF+LAV F
Sbjct: 68  FPILCGFFLLGLFGYAILIYFDFIFGYAGINLSSATLGTAMLNLIPGLTFILAVAF 123

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581160|ref|XP_002531393.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528986|gb|EEF30977.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 1/114 (0%)

Query: 12  LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPP 71
           L+P+  MV     Q     ++K A+SQG    ++ VY+DA+++L+LLP SF ++R +R P
Sbjct: 11  LLPFVGMVVAMLAQASNMEVTKLALSQGINKYVIIVYSDALSTLVLLPCSFIIHRSDRTP 70

Query: 72  LTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125
           L F+LLCK F+LS+ G    QIC Y G+ +SSPTL +A  NLIPAFTF+LA+IF
Sbjct: 71  LDFSLLCKFFLLSVFGWC-AQICGYVGLQYSSPTLGTAMLNLIPAFTFILAIIF 123

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463769|ref|XP_003602166.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355491214|gb|AES72417.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 79/113 (69%), Gaps = 1/113 (0%)

Query: 13  VPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPL 72
           VP+  M+  +C+QV +  LSK  +SQG T  I   Y++ IA+L+LLP SFF++R  RPP+
Sbjct: 6   VPFVGMIIAECIQVALIILSKQVMSQGMTSFIFIFYSNTIAALVLLPSSFFIHRFQRPPI 65

Query: 73  TFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125
           TF+ L   FIL L+G  L Q+  Y G+++SS TLA+A  NL+P FTF+LAV+F
Sbjct: 66  TFSTLSGFFILGLLGY-LAQVFGYAGINYSSSTLATAMLNLVPGFTFILAVLF 117

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505090|gb|AFK40611.1| unknown [Medicago truncatula]

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 79/113 (69%), Gaps = 1/113 (0%)

Query: 13  VPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPL 72
           VP+  M+  +C+QV +  LSK  +SQG T  I   Y++ IA+L+LLP SFF++R  RPP+
Sbjct: 6   VPFVGMIIAECIQVALIILSKQVMSQGMTSFIFIFYSNTIAALVLLPSSFFIHRFQRPPI 65

Query: 73  TFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125
           TF+ L   FIL L+G  L Q+  Y G+++SS TLA+A  NL+P FTF+LAV+F
Sbjct: 66  TFSTLSGFFILGLLGY-LAQVFGYAGINYSSSTLATAMLNLVPGFTFILAVLF 117

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.864	0.318	0.509	2.3e-23
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.896	0.305	0.465	7e-22
TAIR|locus:2012255	374	UMAMIT25 "Usually multiple aci	0.912	0.304	0.447	2.5e-21
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.896	0.302	0.474	6.8e-21
TAIR|locus:2031144	343	UMAMIT22 "Usually multiple aci	0.872	0.317	0.458	1.7e-20
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.896	0.278	0.383	6.2e-20
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.904	0.325	0.417	7.6e-19
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.864	0.3	0.463	1e-18
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.864	0.305	0.454	1.1e-18
TAIR|locus:2201148	389	UMAMIT19 "Usually multiple aci	0.976	0.313	0.384	2.7e-18

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 56/110 (50%), Positives = 78/110 (70%)

Query:    17 AMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNR-KNRPPLTFA 75
             AMV  +   VG+ TL KAA S+G +P ++ VY+    SL+LLPL+FF  R ++ PPLTF+
Sbjct:    16 AMVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFSFRSRSLPPLTFS 75

Query:    76 LLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125
             +LC + IL LI  +  QI  Y G+ +SSPTL+SA +N+ PAFTF+LAV+F
Sbjct:    76 ILCNMGILGLIA-SAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVF 124

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 54/116 (46%), Positives = 81/116 (69%)

Query:    12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNR-- 69
             ++P  A+V ++C  VG+ TL KAA  +G +  +  VY+  +A+L+LLP S F + ++R  
Sbjct:    10 VLPVTALVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLP-SLFCSFRSRTL 68

Query:    70 PPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125
             PP+ F++L K+ +L +IG     I  YTG+++SSPTLASA +NL PAFTFLLAV+F
Sbjct:    69 PPMNFSILYKIVLLGIIGCC-SNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVF 123

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2012255 UMAMIT25 "Usually multiple acids move in and out Transporters 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.5e-21, P = 2.5e-21
 Identities = 51/114 (44%), Positives = 69/114 (60%)

Query:    12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPP 71
             ++P+ AMV VQ    G+   SK A+  G  PLIL  Y    A++   P++FFL RK RP 
Sbjct:     6 MLPFLAMVLVQIGYAGMNITSKMAMEAGMKPLILVAYRQIFATIATFPVAFFLERKTRPK 65

Query:    72 LTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125
             +T  +L +VF  S+ G T  Q+  + G+  SSPT+A A  NL+PA TFLLA IF
Sbjct:    66 ITLRILVQVFFCSITGATGNQVLYFVGLQNSSPTIACALTNLLPAVTFLLAAIF 119

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.8e-21, P = 6.8e-21
 Identities = 55/116 (47%), Positives = 75/116 (64%)

Query:    12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNR-P 70
             +VP+ AMVAV+CV VG  TL KAA  +G +  +   Y   +A+L+LLPLS    R  R P
Sbjct:    19 VVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKRLP 78

Query:    71 PLTFALLCKVFILSLIG-ITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125
                  +   +F+L+L+G ++L+  C   G+ +SSPTLASA +NL PAFTF LAVIF
Sbjct:    79 SAKTPVFFNIFLLALVGFMSLIVGC--KGIEYSSPTLASAISNLTPAFTFTLAVIF 132

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2031144 UMAMIT22 "Usually multiple acids move in and out Transporters 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 50/109 (45%), Positives = 66/109 (60%)

Query:    17 AMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFAL 76
             AMV VQ V  G+  LSK AISQG  P +   Y  A A+L L P +FFL      PL+F L
Sbjct:    10 AMVFVQIVYAGMPLLSKVAISQGTNPFVFVFYRQAFAALALSPFAFFLESSKSSPLSFIL 69

Query:    77 LCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125
             L K+F +SL G+TL     Y  +  ++ T A+AT N IP+ TF+LA++F
Sbjct:    70 LLKIFFISLCGLTLSLNLYYVAIENTTATFAAATTNAIPSITFVLALLF 118

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 6.2e-20, P = 6.2e-20
 Identities = 43/112 (38%), Positives = 75/112 (66%)

Query:    14 PYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLT 73
             PY AM+++Q    G+  ++K +++ G +  +L VY  AIA+ ++ P +FF  RK +P +T
Sbjct:    18 PYFAMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQPKIT 77

Query:    74 FALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125
             F++  ++FIL L+G  + Q   Y G+ ++SPT + A +N++PA TF+LAV+F
Sbjct:    78 FSIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLF 129

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 7.6e-19, P = 7.6e-19
 Identities = 48/115 (41%), Positives = 75/115 (65%)

Query:    12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNR-KNRP 70
             +VP+ AM+A++C  VG + L KAA  +G +  +   YA   A+L+LL LS    R ++ P
Sbjct:    15 VVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSRSLP 74

Query:    71 PLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125
                 +L  K+F+L+L+G+T  ++    G+ +SSPTL+SA +NL PAFTF+LA+ F
Sbjct:    75 TAKSSLFFKIFLLALLGLT-SRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFF 128

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 1.0e-18, P = 1.0e-18
 Identities = 51/110 (46%), Positives = 72/110 (65%)

Query:    17 AMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNR-PPLTFA 75
             AM+ V+   VGI+TL K A S+G        Y+  +ASL+LLP  FF NR +  PPL+ +
Sbjct:    20 AMLVVETSVVGISTLFKFATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSSSLPPLSVS 79

Query:    76 LLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125
             +L K+ +L  +G ++  I  Y G+ +SSPTLASA NN+ PA TF+LA+IF
Sbjct:    80 ILSKIGLLGFLG-SMYVITGYIGIEYSSPTLASAINNITPALTFILAIIF 128

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 50/110 (45%), Positives = 74/110 (67%)

Query:    17 AMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNR-KNRPPLTFA 75
             AM+A +   VGI+TL K A S+G        Y+  +ASL+LLP  FF +R ++ PPL+ +
Sbjct:    17 AMLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASLLLLPSLFFTDRSRSLPPLSLS 76

Query:    76 LLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125
             +L K+ +L L+G ++  I  Y G+ +SSPTLASA +N+ PA TF+LA+IF
Sbjct:    77 ILSKIGLLGLLG-SMYVITGYIGIEYSSPTLASAISNITPALTFILAIIF 125

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2201148 UMAMIT19 "Usually multiple acids move in and out Transporters 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 2.7e-18, P = 2.7e-18
 Identities = 48/125 (38%), Positives = 75/125 (60%)

Query:     1 MGMGVKQLVVGLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPL 60
             MG G   L+  L PY AM+++Q    G+  ++  ++  G    +LAVY  AIA+ ++ P 
Sbjct:     1 MGRG---LMNSLKPYLAMISMQFGYAGMYIITMVSLKHGMNHYVLAVYRHAIATAVIAPF 57

Query:    61 SFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFL 120
             + F  RK RP +TF +  ++ +L  I   L Q   Y G++++S T ASAT N++PA TF+
Sbjct:    58 ALFHERKIRPKMTFRIFLQIALLGFIEPVLDQNLYYVGMTYTSATFASATANVLPAITFV 117

Query:   121 LAVIF 125
             LA+IF
Sbjct:   118 LAIIF 122

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	125
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	3e-20

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score = 83.9 bits (207), Expect = 3e-20
 Identities = 49/110 (44%), Positives = 73/110 (66%), Gaps = 2/110 (1%)

Query: 17  AMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNR-KNRPPLTFA 75
           AM+A +   VGI+TL K A S+G        Y+  +ASL+LLP  FF NR ++ PPL+ +
Sbjct: 17  AMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVS 76

Query: 76  LLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125
           +L K+ +L  +G ++  I  Y G+ +S+PTLASA +N+ PA TF+LA+IF
Sbjct: 77  ILSKIGLLGFLG-SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIF 125

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
PLN00411	358	nodulin MtN21 family protein; Provisional	99.72
PRK11272	292	putative DMT superfamily transporter inner membran	99.54
PRK15430	296	putative chloramphenical resistance permease RarD;	99.52
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.51
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.49
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.41
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.41
COG2510	140	Predicted membrane protein [Function unknown]	99.38
PRK11689	295	aromatic amino acid exporter; Provisional	99.36
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.31
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.3
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.3
PRK11272	292	putative DMT superfamily transporter inner membran	99.22
PRK11689	295	aromatic amino acid exporter; Provisional	99.12
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.11
PLN00411	358	nodulin MtN21 family protein; Provisional	99.07
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.97
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.87
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.85
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.75
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.75
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.68
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.68
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.57
PRK15430	296	putative chloramphenical resistance permease RarD;	98.53
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.47
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.39
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.29
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.28
COG2962	293	RarD Predicted permeases [General function predict	98.19
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.15
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.11
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.01
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.44
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.36
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.26
COG2962	293	RarD Predicted permeases [General function predict	96.24
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.0
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	95.89
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	95.68
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	95.65
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	95.49
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	95.19
KOG4510	346	consensus Permease of the drug/metabolite transpor	94.99
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	94.84
KOG2765	416	consensus Predicted membrane protein [Function unk	94.18
PRK13499	345	rhamnose-proton symporter; Provisional	91.76
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	91.74
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	91.73
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	88.6
PRK13499	345	rhamnose-proton symporter; Provisional	84.46
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	84.37
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	81.86

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.72  E-value=2.4e-16  Score=121.47  Aligned_cols=114  Identities=44%  Similarity=0.690  Sum_probs=103.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHHHHH
Q 040945           11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNR-KNRPPLTFALLCKVFILSLIGIT   89 (125)
Q Consensus        11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~   89 (125)
                      +.++++.++...++++...++.|.+++.+++|+.+.++|+.+|+++++++.+.+++ ++.++.+++++..+...|+++ .
T Consensus        11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g-~   89 (358)
T PLN00411         11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG-S   89 (358)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH-H
Confidence            68899999999999999999999999999999999999999999999998876544 333445688999999999999 5


Q ss_pred             HHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           90 LMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        90 ~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      +++.+++.|+++++|++++++.++.|+++.++++++
T Consensus        90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~  125 (358)
T PLN00411         90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIF  125 (358)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHH
Confidence            788899999999999999999999999999999864

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.54  E-value=5e-13  Score=100.13  Aligned_cols=109  Identities=17%  Similarity=0.230  Sum_probs=92.9

Q ss_pred             hHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 040945           12 LVP-YAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITL   90 (125)
Q Consensus        12 ~~~-~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~   90 (125)
                      ..+ .+..+...++||.+++..|.+.+ ++||.+++++|+.+++++++++...++++   ..+++++......|.++...
T Consensus         6 ~~~~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~   81 (292)
T PRK11272          6 LLPLFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLRGHP---LPTLRQWLNAALIGLLLLAV   81 (292)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHHHHHHHHHHHHH
Confidence            444 45577888999999999999887 89999999999999999988887553322   22467888888999988778


Q ss_pred             HHHHHHHhh-cccchHHHHHhhhhHHHHHHHHHHh
Q 040945           91 MQICVYTGV-SFSSPTLASATNNLIPAFTFLLAVI  124 (125)
Q Consensus        91 ~~~~~~~gl-~~~~a~~a~il~~~~P~~~~lla~~  124 (125)
                      ++.+++.+. ++++++.++++.++.|+++.+++++
T Consensus        82 ~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~  116 (292)
T PRK11272         82 GNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL  116 (292)
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999 9999999999999999999999874

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.52  E-value=3.3e-13  Score=101.30  Aligned_cols=111  Identities=12%  Similarity=-0.084  Sum_probs=89.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCC--C-CCCHHHHHHHHHHHHHHH
Q 040945           12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNR--P-PLTFALLCKVFILSLIGI   88 (125)
Q Consensus        12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~--~-~~~~~~~~~l~~~gl~~~   88 (125)
                      .++++++++++++||.+++..|.. + ++||.++.++|+.++.+++.+....+++.+.  + ..+++++.. ...+.++.
T Consensus         7 ~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   83 (296)
T PRK15430          7 RQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFM-LAVSAVLI   83 (296)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHH-HHHHHHHH
Confidence            578999999999999999999975 4 7999999999999999888777654332111  0 113444433 34666777


Q ss_pred             HHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           89 TLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        89 ~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      ..++.++++|++++++++++++.++.|+++.++++++
T Consensus        84 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~  120 (296)
T PRK15430         84 GGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIF  120 (296)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999998864

>TIGR00688 rarD rarD protein

Probab=99.51  E-value=3e-13  Score=99.35  Aligned_cols=110  Identities=11%  Similarity=-0.023  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCHH-HHHHHHHHHHH
Q 040945           13 VPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKN-----RPPLTFA-LLCKVFILSLI   86 (125)
Q Consensus        13 ~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~-----~~~~~~~-~~~~l~~~gl~   86 (125)
                      ++++++++++++||.+.+++|. .+ ++||.++.++|+.++++++.++...+++++     .++.+++ ++..+...|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            4788999999999999999998 55 799999999999999988877664433211     1111222 24455666766


Q ss_pred             HHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           87 GITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        87 ~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                       ..+++.+++++++++++++++++.++.|++++++++++
T Consensus        80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~  117 (256)
T TIGR00688        80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVF  117 (256)
T ss_pred             -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHH
Confidence             45899999999999999999999999999999999864

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.49  E-value=1.4e-13  Score=89.64  Aligned_cols=100  Identities=23%  Similarity=0.315  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 040945           23 CVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFS  102 (125)
Q Consensus        23 ~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~gl~~~  102 (125)
                      ++||.+.+..|+..+ +.||....++|+..+++ +.+.....++++..+.+++++......|.++..+++.+++++++++
T Consensus         1 ~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLK-KISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHhc-cCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            479999999999997 79999999999999997 6665555544433456788899999999998889999999999999


Q ss_pred             chHHHHHhhhhHHHHHHHHHHh
Q 040945          103 SPTLASATNNLIPAFTFLLAVI  124 (125)
Q Consensus       103 ~a~~a~il~~~~P~~~~lla~~  124 (125)
                      ++++++.+.++.|+++.+++++
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~  100 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWL  100 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999975

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.41  E-value=9.2e-12  Score=93.40  Aligned_cols=106  Identities=13%  Similarity=0.034  Sum_probs=91.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 040945           11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITL   90 (125)
Q Consensus        11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~   90 (125)
                      +..++.++++++++|+.+.+++|.+.+ +.||..+.++|+.+++++++++... ++.   +.+++++...+..|+.. ..
T Consensus        10 ~~~~~~~~~la~~~~~~~~~~~K~~~~-~~~~~~~~~~R~~~a~l~l~~~~~~-~~~---~~~~~~~~~~~~~g~~~-~~   83 (293)
T PRK10532         10 VWLPILLLLIAMASIQSGASLAKSLFP-LVGAPGVTALRLALGTLILIAIFKP-WRL---RFAKEQRLPLLFYGVSL-GG   83 (293)
T ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHHH-HcCHHHHHHHHHHHHHHHHHHHHhH-Hhc---cCCHHHHHHHHHHHHHH-HH
Confidence            478899999999999999999999998 7999999999999999888876532 221   24567788888888875 57


Q ss_pred             HHHHHHHhhcccchHHHHHhhhhHHHHHHHHH
Q 040945           91 MQICVYTGVSFSSPTLASATNNLIPAFTFLLA  122 (125)
Q Consensus        91 ~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla  122 (125)
                      .+.++++++++++++.++++.++.|+++.+++
T Consensus        84 ~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~  115 (293)
T PRK10532         84 MNYLFYLSIQTVPLGIAVALEFTGPLAVALFS  115 (293)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence            78899999999999999999999999999876

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.41  E-value=1.3e-11  Score=90.23  Aligned_cols=113  Identities=20%  Similarity=0.249  Sum_probs=96.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 040945           10 VGLVPYAAMVAVQCVQVGITTLSKAAISQGAT--PLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIG   87 (125)
Q Consensus        10 ~~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~--p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~   87 (125)
                      .+..+..+.+.++++|+.+....|+..+ +.+  +.....+|+.++.+++.+.....++.  ...+.+++..+++.|+++
T Consensus       125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  201 (260)
T TIGR00950       125 INPAGLLLGLGSGISFALGTVLYKRLVK-KEGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIG  201 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHH
Confidence            4467999999999999999999999886 566  44566678999999988887654332  234678888899999999


Q ss_pred             HHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           88 ITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        88 ~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      +.+++.++++++++.++++++.+.++.|++++++++++
T Consensus       202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~  239 (260)
T TIGR00950       202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLI  239 (260)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999763

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.38  E-value=3.8e-12  Score=84.39  Aligned_cols=110  Identities=10%  Similarity=0.109  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHHHHHHHH
Q 040945           14 PYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRP-PLTFALLCKVFILSLIGITLMQ   92 (125)
Q Consensus        14 ~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~~gl~~~~~~~   92 (125)
                      ...+.+++++.||+..+++|..++ ++||...++.|..+..++++.++...++.+.+ ..++|.|..+...|+.+ .+..
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-glsw   81 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLSW   81 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHHH
Confidence            467899999999999999999997 99999999999999999999998877665432 35788899999999655 6999


Q ss_pred             HHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           93 ICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        93 ~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      .+||.++|...++..+-+..+.|+++++++++|
T Consensus        82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lf  114 (140)
T COG2510          82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILF  114 (140)
T ss_pred             HHHHHHHhcCCcceEEEcccccHHHHHHHHHHH
Confidence            999999999999999999999999999999874

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.36  E-value=1.2e-11  Score=92.91  Aligned_cols=106  Identities=15%  Similarity=0.149  Sum_probs=82.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 040945           12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLM   91 (125)
Q Consensus        12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~   91 (125)
                      .++++.++.++++||.+++..|.+.+ ++||..+.++|+.++++++.++.   ++++.++.+   + ..+..+.++...+
T Consensus         3 ~~~~l~~l~a~~~Wg~~~~~~k~~~~-~~~P~~~~~~R~~~a~l~l~~~~---~~~~~~~~~---~-~~~~~~~l~~~~~   74 (295)
T PRK11689          3 QKATLIGLIAILLWSTMVGLIRGVSE-SLGPVGGAAMIYSVSGLLLLLTV---GFPRLRQFP---K-RYLLAGGLLFVSY   74 (295)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHHHHc---ccccccccc---H-HHHHHHhHHHHHH
Confidence            45678899999999999999999997 89999999999999998888753   111111112   2 2334455566678


Q ss_pred             HHHHHHhhc----ccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           92 QICVYTGVS----FSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        92 ~~~~~~gl~----~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      +.+++.+++    ..++++++++.++.|+++.++++++
T Consensus        75 ~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~  112 (295)
T PRK11689         75 EICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLF  112 (295)
T ss_pred             HHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHH
Confidence            888888775    4678899999999999999999863

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.31  E-value=4.7e-11  Score=89.72  Aligned_cols=101  Identities=15%  Similarity=0.066  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040945           15 YAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQIC   94 (125)
Q Consensus        15 ~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~   94 (125)
                      .+..++++++||.+++..|.+.+ ++||..+.++|+.++++.+.+..  ++ +   +.++   ..++..|+......+.+
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~--~~-~---~~~~---~~~~~~g~~~~~~~~~~   75 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV--AR-P---KVPL---NLLLGYGLTISFGQFAF   75 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh--cC-C---CCch---HHHHHHHHHHHHHHHHH
Confidence            35688899999999999999997 89999999999999877665543  11 1   1222   23445566665567778


Q ss_pred             HHHhhcc-cchHHHHHhhhhHHHHHHHHHHhC
Q 040945           95 VYTGVSF-SSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        95 ~~~gl~~-~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      ++.++++ .++++++++.++.|+++.++++++
T Consensus        76 ~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~  107 (299)
T PRK11453         76 LFCAINFGMPAGLASLVLQAQAFFTIVLGAFT  107 (299)
T ss_pred             HHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHH
Confidence            8899987 588999999999999999999863

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.30  E-value=2.9e-11  Score=88.41  Aligned_cols=94  Identities=17%  Similarity=0.146  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 040945           25 QVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSP  104 (125)
Q Consensus        25 wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~gl~~~~a  104 (125)
                      ||.+++..|..++++.||....++|+..+.+.+.+....  +     .+++++......|.++..+++.+++.|++++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~   73 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV   73 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            899999999998767899999999999998888776432  2     235567788889999888999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHhC
Q 040945          105 TLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus       105 ~~a~il~~~~P~~~~lla~~~  125 (125)
                      ++++++.++.|++++++++++
T Consensus        74 ~~~~ii~~~~P~~~~~~~~l~   94 (260)
T TIGR00950        74 GEAALLLYLAPLYVTLLSDLM   94 (260)
T ss_pred             hhhHHHHhhhHHHHHHHHHHH
Confidence            999999999999999999864

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.30  E-value=1.1e-10  Score=87.54  Aligned_cols=111  Identities=14%  Similarity=0.139  Sum_probs=90.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 040945           11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITL   90 (125)
Q Consensus        11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~   90 (125)
                      +..+.++.++++++|+.+.+..|+..+ +.+|.... +....+++.+.+.......  ....++..+..++++|++++.+
T Consensus       146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~-~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~  221 (293)
T PRK10532        146 DLTGAALALGAGACWAIYILSGQRAGA-EHGPATVA-IGSLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTAL  221 (293)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHH-HHHHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHH
Confidence            456899999999999999999999875 67887775 4455666666676654322  1234666677778999999999


Q ss_pred             HHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           91 MQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        91 ~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      ++.+|++++++.++++++++.+++|+++.++++++
T Consensus       222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~  256 (293)
T PRK10532        222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIF  256 (293)
T ss_pred             HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999863

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.22  E-value=5.7e-10  Score=83.62  Aligned_cols=113  Identities=12%  Similarity=0.033  Sum_probs=93.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 040945           11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITL   90 (125)
Q Consensus        11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~   90 (125)
                      +..+.++.++++++|+.+....|+..+  -++...+.+++.+++..+.+.............+.++|..+++.|++++.+
T Consensus       148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~  225 (292)
T PRK11272        148 NPWGAILILIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII  225 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence            456899999999999999999998643  345667789998888888777654332211223667899999999999999


Q ss_pred             HHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           91 MQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        91 ~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      ++.+|++++++.++++++.+.+++|++++++++++
T Consensus       226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~  260 (292)
T PRK11272        226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGL  260 (292)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999763

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.12  E-value=2.2e-09  Score=80.63  Aligned_cols=108  Identities=12%  Similarity=0.192  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 040945           12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLM   91 (125)
Q Consensus        12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~   91 (125)
                      ..+.+++++++++|+.+.+..|+..+ +.+|.....   ..+.+.+.+.....+ ......+++.|..+++.|+ .+.++
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~-~t~~~  228 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLFF---ILTALALWIKYFLSP-QPAMVFSLPAIIKLLLAAA-AMGFG  228 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHHH---HHHHHHHHHHHHHhc-CccccCCHHHHHHHHHHHH-HHHHH
Confidence            35889999999999999999999765 678876532   333344444333322 2122356778888888885 67899


Q ss_pred             HHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           92 QICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        92 ~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      |.+|++++|+.++++++.+.+++|++++++++++
T Consensus       229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~  262 (295)
T PRK11689        229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALL  262 (295)
T ss_pred             HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999763

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.11  E-value=4.6e-09  Score=78.95  Aligned_cols=114  Identities=11%  Similarity=0.124  Sum_probs=86.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCCCHHHHHHHHHHH
Q 040945           12 LVPYAAMVAVQCVQVGITTLSKAAISQG--ATPLILAVYADAIASLILLPLSFFLNRK-----NRPPLTFALLCKVFILS   84 (125)
Q Consensus        12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~--~~p~~~~~~r~~~a~~~l~~~~~~~~~~-----~~~~~~~~~~~~l~~~g   84 (125)
                      ..+.++.+.++++|+.+.+..|+..+++  .+......+....+.+.+.......+.+     .....+.++|..++++|
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            4689999999999999999999875422  2234445555555544444333222211     11235778899999999


Q ss_pred             HHHHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           85 LIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        85 l~~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      ++++.+++.+|++++++.++++++.+.+++|+++.++++++
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~  262 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALL  262 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999863

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.07  E-value=8e-09  Score=79.90  Aligned_cols=111  Identities=12%  Similarity=0.137  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHhhcCC----CCCCCHHHHHHHHHHHHH
Q 040945           12 LVPYAAMVAVQCVQVGITTLSKAAISQGATP-LILAVYADAIASLILLPLSFFLNRKN----RPPLTFALLCKVFILSLI   86 (125)
Q Consensus        12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p-~~~~~~r~~~a~~~l~~~~~~~~~~~----~~~~~~~~~~~l~~~gl~   86 (125)
                      ..+.+.++.++++|+.+.+..|+..+ +++| ...+++...++++...+......+.+    ....+.. ...+++.|+.
T Consensus       188 ~lG~~l~l~aa~~wa~~~il~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~  265 (358)
T PLN00411        188 LIGGALLTIQGIFVSVSFILQAHIMS-EYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII  265 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH
Confidence            34778899999999999999998877 5655 46777887777766655554433211    1123333 3346677766


Q ss_pred             HHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           87 GITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        87 ~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                       +.+++.+|++++++.||++++++.+++|++++++|+++
T Consensus       266 -t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~  303 (358)
T PLN00411        266 -TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIF  303 (358)
T ss_pred             -HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHH
Confidence             56899999999999999999999999999999999864

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.97  E-value=1.3e-08  Score=76.43  Aligned_cols=94  Identities=17%  Similarity=0.200  Sum_probs=77.3

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH
Q 040945           30 TLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASA  109 (125)
Q Consensus        30 ~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~gl~~~~a~~a~i  109 (125)
                      +..|.++++-.+|..++++|+.++.+...+.. ..+..+.++.++++++.++..|++. ..++.+.+.++++++++.+++
T Consensus        19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s~~~l   96 (302)
T TIGR00817        19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSW-SSGLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVSFTHT   96 (302)
T ss_pred             HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHH-HhCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHHHHH
Confidence            57899998337899999999999877665542 1122223456789999999999997 688999999999999999999


Q ss_pred             hhhhHHHHHHHHHHhC
Q 040945          110 TNNLIPAFTFLLAVIF  125 (125)
Q Consensus       110 l~~~~P~~~~lla~~~  125 (125)
                      +.++.|+++.++++++
T Consensus        97 i~~~~Pv~~~ll~~~~  112 (302)
T TIGR00817        97 IKAMEPFFSVVLSAFF  112 (302)
T ss_pred             HHhcchHHHHHHHHHH
Confidence            9999999999999764

specificities overlap.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.87  E-value=5.8e-08  Score=72.34  Aligned_cols=107  Identities=11%  Similarity=0.133  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040945           15 YAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLN-RKNRPPLTFALLCKVFILSLIGITLMQI   93 (125)
Q Consensus        15 ~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~   93 (125)
                      .+..+.++++|+...+..|+..+ +-++  ..+++...+++++.+....+. +..+++.+++.+ .....+..+...++.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~-~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   78 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHAD-KEPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFW-LLLAISAVANMVYFL   78 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCC-chhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhH-HHHHHHHHHHHHHHH
Confidence            45678999999999999997665 3344  347777777778877765532 222232333334 445555556678999


Q ss_pred             HHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           94 CVYTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        94 ~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      +++.|+++.+++.++.+.++.|+++.++++++
T Consensus        79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~  110 (281)
T TIGR03340        79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLT  110 (281)
T ss_pred             HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999863

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.85  E-value=1.6e-07  Score=72.35  Aligned_cols=111  Identities=14%  Similarity=0.126  Sum_probs=81.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHHHH
Q 040945           12 LVPYAAMVAVQCVQVGITTLSKAAISQGAT-PLILAVYADAIASLILLPLSFFLNRKNRPPL--TFALLCKVFILSLIGI   88 (125)
Q Consensus        12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~-p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~--~~~~~~~l~~~gl~~~   88 (125)
                      .+....++.=-.+=..+....|.+++ +.| |.+++.+|+.++.++....... +.++.++.  .++++..++.+|+++.
T Consensus        48 ~~~~~~~~~wy~~s~~~~~~nK~vl~-~~~~P~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~llp~gl~~~  125 (350)
T PTZ00343         48 WKLALLFLTWYALNVLYVVDNKLALN-MLPLPWTISSLQLFVGWLFALLYWAT-GFRKIPRIKSLKLFLKNFLPQGLCHL  125 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hCChhHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            33344444333444556778999998 799 9999999999997765444322 22222333  2458899999999997


Q ss_pred             HHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           89 TLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        89 ~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      .. +...+.++++++++.+.++.++.|++++++++++
T Consensus       126 ~~-~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~  161 (350)
T PTZ00343        126 FV-HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILF  161 (350)
T ss_pred             HH-HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHH
Confidence            65 5567899999999999999999999999999863

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.75  E-value=6.4e-08  Score=72.70  Aligned_cols=116  Identities=14%  Similarity=0.193  Sum_probs=83.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---------CCH-HHHH
Q 040945           10 VGLVPYAAMVAVQCVQVGITTLSKAAISQ-GATPLILAVYADAIASLILLPLSFFLNRKNRPP---------LTF-ALLC   78 (125)
Q Consensus        10 ~~~~~~l~~l~~~~~wg~~~~~~K~~~~~-~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~---------~~~-~~~~   78 (125)
                      .+..|.++.++++++|+.+.+..|+..++ +.||.....+....+++.+.|.....+..+...         .+. ..+.
T Consensus       142 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (302)
T TIGR00817       142 FNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYT  221 (302)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHH
Confidence            45679999999999999999999997642 589999999999999999999876533211000         010 0111


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           79 KVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        79 ~l~~~gl~~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      ..+..+.......+.+++.+++++||+.+++..++.|++++++|+++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~  268 (302)
T TIGR00817       222 VSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILF  268 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhh
Confidence            12233332333445677789999999999999999999999988753

specificities overlap.

>TIGR00688 rarD rarD protein

Probab=98.75  E-value=4.8e-07  Score=66.41  Aligned_cols=105  Identities=8%  Similarity=-0.014  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHHHHHHHHHH
Q 040945           16 AAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPP-LTFALLCKVFILSLIGITLMQIC   94 (125)
Q Consensus        16 l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~~gl~~~~~~~~~   94 (125)
                      +..+.++++|+.+.+..|+..+  .++......... ...+..+............ .+.++|..++..|+. +.+++.+
T Consensus       149 ~~~l~aa~~~a~~~i~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l  224 (256)
T TIGR00688       149 WEALVLAFSFTAYGLIRKALKN--TDLAGFCLETLS-LMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPLLA  224 (256)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCC--CCcchHHHHHHH-HHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHHHH
Confidence            3578899999999999998643  233222222211 1111111111111111111 123578999999987 6799999


Q ss_pred             HHHhhcccchHHHHHhhhhHHHHHHHHHHh
Q 040945           95 VYTGVSFSSPTLASATNNLIPAFTFLLAVI  124 (125)
Q Consensus        95 ~~~gl~~~~a~~a~il~~~~P~~~~lla~~  124 (125)
                      +++|+++.++++++.+.+++|+++.++|++
T Consensus       225 ~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~  254 (256)
T TIGR00688       225 FVIAANRLPLNLLGLLQYIGPTIMMLCVSF  254 (256)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999975

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.68  E-value=5.9e-08  Score=72.30  Aligned_cols=113  Identities=15%  Similarity=-0.035  Sum_probs=76.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 040945           11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPL----ILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLI   86 (125)
Q Consensus        11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~----~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~   86 (125)
                      +..+..+.+.++++|+.+.+..|+..+ +.+|.    ....+.+...++.+.+.....++.. ...+.+.+....+.+.+
T Consensus       142 ~~~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  219 (281)
T TIGR03340       142 RRKAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS-MFPYARQILPSATLGGL  219 (281)
T ss_pred             chhHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHHHHHHHHH
Confidence            345677899999999999999997643 44443    2333343333222222222112111 11123344566788888


Q ss_pred             HHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           87 GITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        87 ~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      .+.+++.+|++++++.++++++.+.+++|+++.++++++
T Consensus       220 ~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~  258 (281)
T TIGR03340       220 MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWF  258 (281)
T ss_pred             HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHH
Confidence            888999999999999999999999999999999999763

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.68  E-value=1e-06  Score=64.49  Aligned_cols=110  Identities=26%  Similarity=0.332  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 040945           12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLM   91 (125)
Q Consensus        12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~   91 (125)
                      .......+...+.|+.+....|...+...++....+.|...+.....+.... ++.+..+ ..+++......+.+....+
T Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~   83 (292)
T COG0697           6 LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGLRP-ALRPWLLLLLLALLGLALP   83 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcccccc-cccchHHHHHHHHHHHHHH
Confidence            5567778888899999999999988733677777777999988874443322 1111111 1122446677788888899


Q ss_pred             HHHHHHhhcccchHHHHHhhhhHHHHHHHHHH
Q 040945           92 QICVYTGVSFSSPTLASATNNLIPAFTFLLAV  123 (125)
Q Consensus        92 ~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~  123 (125)
                      +.+++.++++++++.++.+.++.|+++.++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~  115 (292)
T COG0697          84 FLLLFLALKYTSASVASLIIGLLPLFTALLAV  115 (292)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999995

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.57  E-value=3.9e-06  Score=61.47  Aligned_cols=109  Identities=22%  Similarity=0.239  Sum_probs=84.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 040945           11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAV-YADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGIT   89 (125)
Q Consensus        11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~-~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~   89 (125)
                      ...+.++.+.++++|+.+.+..|+..  ..++..... +.+..+.....+..  ..... ...+.+++..+...|++++.
T Consensus       152 ~~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~~~~  226 (292)
T COG0697         152 SLLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFF--LSGFG-APILSRAWLLLLYLGVFSTG  226 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHH--hcccc-ccCCHHHHHHHHHHHHHHHH
Confidence            36799999999999999999999865  467777666 55442222222221  12111 34567889999999999998


Q ss_pred             HHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHh
Q 040945           90 LMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVI  124 (125)
Q Consensus        90 ~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~  124 (125)
                      +++.+++++++..+++..+.+.++.|+++.+++++
T Consensus       227 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l  261 (292)
T COG0697         227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVL  261 (292)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999998775

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.53  E-value=2.7e-06  Score=63.88  Aligned_cols=108  Identities=14%  Similarity=0.124  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040945           16 AAMVAVQCVQVGITTLSKAAISQ-GATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQIC   94 (125)
Q Consensus        16 l~~l~~~~~wg~~~~~~K~~~~~-~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~   94 (125)
                      ...+.++++|+.+.+..|+..++ ..++.....+....+.....+.... ...+....+...+..+...|+ .+.+++.+
T Consensus       152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~-~t~i~~~~  229 (296)
T PRK15430        152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADS-STSHMGQNPMSLNLLLIAAGI-VTTVPLLC  229 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccC-CcccccCCcHHHHHHHHHHHH-HHHHHHHH
Confidence            35778899999999999986431 1233444455555554433222110 001111112233444555565 45689999


Q ss_pred             HHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           95 VYTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        95 ~~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      +++++++.+|++++.+.+++|+++.++++++
T Consensus       230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~  260 (296)
T PRK15430        230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTF  260 (296)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999863

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.47  E-value=1e-05  Score=62.37  Aligned_cols=118  Identities=14%  Similarity=0.108  Sum_probs=83.6

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHHhhcCCC--------CCC
Q 040945            7 QLVVGLVPYAAMVAVQCVQVGITTLSKAAISQ------GATPLILAVYADAIASLILLPLSFFLNRKNR--------PPL   72 (125)
Q Consensus         7 ~~~~~~~~~l~~l~~~~~wg~~~~~~K~~~~~------~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~--------~~~   72 (125)
                      +...+..|.+++++++++|+...+..|+..++      +.++.....+....++++++|+....+....        ...
T Consensus       188 ~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~  267 (350)
T PTZ00343        188 ELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANM  267 (350)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcc
Confidence            34456779999999999999999999998762      2567777777788999999888763321100        000


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH----HhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           73 TFALLCKVFILSLIGITLMQICVY----TGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        73 ~~~~~~~l~~~gl~~~~~~~~~~~----~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      +...+..++.. ++.+.+.+.+++    .++++++|...++..++.|++++++|+++
T Consensus       268 ~~~~~~~~l~~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~  323 (350)
T PTZ00343        268 TNYTKGIIIFK-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIII  323 (350)
T ss_pred             cccchHHHHHH-HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHH
Confidence            11111222232 333456666666    59999999999999999999999999863

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.39  E-value=5e-06  Score=61.40  Aligned_cols=112  Identities=16%  Similarity=0.072  Sum_probs=95.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 040945           11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITL   90 (125)
Q Consensus        11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~   90 (125)
                      +..|..+.+.++.+|+.|-+.+|++-+ .-|.-.-+..-+.+++++.+|+..-+.....  .++.-+..-+..|++++.+
T Consensus       146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l--~~p~ll~laLgvavlSSal  222 (292)
T COG5006         146 DPVGVALALGAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQAGPAL--FSPSLLPLALGVAVLSSAL  222 (292)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhhcchhh--cChHHHHHHHHHHHHhccc
Confidence            456888999999999999999999865 4566677788899999999999865433222  4666677888999999999


Q ss_pred             HHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           91 MQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        91 ~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      +|.+.-.++++.++..-+++.+++|.+.++.++++
T Consensus       223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~  257 (292)
T COG5006         223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIF  257 (292)
T ss_pred             chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHH
Confidence            99999999999999999999999999999998864

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.29  E-value=1.5e-05  Score=59.98  Aligned_cols=104  Identities=10%  Similarity=-0.005  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH----HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 040945           12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADA----IASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIG   87 (125)
Q Consensus        12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~----~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~   87 (125)
                      .++..+.+.+++.++.+....|..   +.||.+.++.+..    .+.+.+.+.   ++.  .+ .+.+.....+..|++ 
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~--~~-~~~~~~~~~~~~Gi~-  220 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH---ILA--KP-LKKYAILLNILPGLM-  220 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH---hcc--cc-hHHHHHHHHHHHHHH-
Confidence            679999999999999999999964   4899998666655    444333332   111  11 223334445558988 


Q ss_pred             HHHHHHHHHHhhc-ccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           88 ITLMQICVYTGVS-FSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        88 ~~~~~~~~~~gl~-~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      ..+++.+|+.+.+ +.+++.++++.+..|+.+.+.++++
T Consensus       221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~  259 (290)
T TIGR00776       221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILI  259 (290)
T ss_pred             HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999 9999999999999999999998763

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.28  E-value=2.5e-06  Score=55.52  Aligned_cols=78  Identities=22%  Similarity=0.340  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHh
Q 040945           47 VYADAIASLILLPLSFFLNRKNR--PPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVI  124 (125)
Q Consensus        47 ~~r~~~a~~~l~~~~~~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~  124 (125)
                      .+|+..+.+++..+...+++.+.  +..+.+++...+..|+++...++.++++|+++.+ +..+.+.++.|+++.+++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            57999999988888877543211  1223455677778888887789999999999999 58889999999999999986


Q ss_pred             C
Q 040945          125 F  125 (125)
Q Consensus       125 ~  125 (125)
                      +
T Consensus        81 ~   81 (113)
T PF13536_consen   81 F   81 (113)
T ss_pred             H
Confidence            3

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.19  E-value=3.2e-05  Score=58.00  Aligned_cols=112  Identities=13%  Similarity=-0.039  Sum_probs=93.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCCCHHHHHHHHHHHHHH
Q 040945           11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNR---PPLTFALLCKVFILSLIG   87 (125)
Q Consensus        11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~---~~~~~~~~~~l~~~gl~~   87 (125)
                      ..+|++..+.+.+.||..+...|.. + +.|+.++...|.+-+..++..+....++.+.   ...++|.+..+...+++-
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li   82 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI   82 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence            4679999999999999999999964 4 7999999999999998888887766543221   123567777777777775


Q ss_pred             HHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           88 ITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        88 ~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                       ......|.++...-..-++|+=.++.|++.++++.+|
T Consensus        83 -~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lf  119 (293)
T COG2962          83 -GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLF  119 (293)
T ss_pred             -HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHH
Confidence             4899999999999999999999999999999998764

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.15  E-value=3.2e-05  Score=57.23  Aligned_cols=103  Identities=19%  Similarity=0.090  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040945           14 PYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQI   93 (125)
Q Consensus        14 ~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~   93 (125)
                      ++..++.+++.-=...-+.|...+ .++|...+.+|..++++++..+.+..    +.+.+++++..+...|..-. .-|.
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP-~vG~~g~t~lRl~~aaLIll~l~RPw----r~r~~~~~~~~~~~yGvsLg-~MNl   86 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFP-LVGAAGVTALRLAIAALILLALFRPW----RRRLSKPQRLALLAYGVSLG-GMNL   86 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHcc-ccChhhHHHHHHHHHHHHHHHHhhHH----HhccChhhhHHHHHHHHHHH-HHHH
Confidence            688888888777777788999988 89999999999999999988876432    24567888999988888754 6789


Q ss_pred             HHHHhhcccchHHHHHhhhhHHHHHHHHH
Q 040945           94 CVYTGVSFSSPTLASATNNLIPAFTFLLA  122 (125)
Q Consensus        94 ~~~~gl~~~~a~~a~il~~~~P~~~~lla  122 (125)
                      ++|.++++++-+.+.-+.++-|+....++
T Consensus        87 ~FY~si~riPlGiAVAiEF~GPL~vA~~~  115 (292)
T COG5006          87 LFYLSIERIPLGIAVAIEFTGPLAVALLS  115 (292)
T ss_pred             HHHHHHHhccchhhhhhhhccHHHHHHHh
Confidence            99999999999999999999999887764

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.11  E-value=6.4e-05  Score=56.56  Aligned_cols=104  Identities=10%  Similarity=0.007  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040945           14 PYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQI   93 (125)
Q Consensus        14 ~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~   93 (125)
                      ++++.++++++||...+..|+..  +.++.+..  |..++.+++.......++++  ..+++.+..-+..|++ -..++.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~~--~~~~~~~~~g~l~G~~-w~ig~~   74 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLPE--FWALSIFLVGLLSGAF-WALGQI   74 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCCc--ccccHHHHHHHHHHHH-HHhhhh
Confidence            46788999999999999999853  67887775  77777776666554433222  1123333333333333 457889


Q ss_pred             HHHHhhcccchHHHHHhhh-hHHHHHHHHHHh
Q 040945           94 CVYTGVSFSSPTLASATNN-LIPAFTFLLAVI  124 (125)
Q Consensus        94 ~~~~gl~~~~a~~a~il~~-~~P~~~~lla~~  124 (125)
                      +++.+.++++.+.+-.+.+ +.|++..+.+.+
T Consensus        75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~  106 (290)
T TIGR00776        75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVI  106 (290)
T ss_pred             hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHH
Confidence            9999999999999988888 888888777754

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.01  E-value=0.00054  Score=46.10  Aligned_cols=111  Identities=23%  Similarity=0.362  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC----C-------CHHH
Q 040945           14 PYAAMVAVQCVQVGITTLSKAAISQ------GATPLILAVYADAIASLILLPLSFFLNRKNRPP----L-------TFAL   76 (125)
Q Consensus        14 ~~l~~l~~~~~wg~~~~~~K~~~~~------~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~----~-------~~~~   76 (125)
                      |..+.+.+.++-++..+..|+.+++      +.+|.++..+....+.+++.+.....++.+..+    .       +.+.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            4567889999999999999998875      689999999999999999999887765433110    0       2345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           77 LCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        77 ~~~l~~~gl~~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      +..++..|+++ ...+...+.-+++++|...++..+.-.+.+.++++++
T Consensus        81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~  128 (153)
T PF03151_consen   81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIF  128 (153)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhh
Confidence            66666777776 4889999999999999999999999999998888764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.44  E-value=0.0079  Score=46.41  Aligned_cols=114  Identities=16%  Similarity=0.209  Sum_probs=74.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHHHH
Q 040945           11 GLVPYAAMVAVQCVQVGITTLSKAAISQGAT-PLILAVYADAIASLILLPLSFFLNRK-NRPPLTFALLCKVFILSLIGI   88 (125)
Q Consensus        11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~-p~~~~~~r~~~a~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~   88 (125)
                      .++..+.-=..+++=..+...+....+++.+ |..-+++-+..-.++..+...++++. ++.+.-+++|.+.+.+|++-.
T Consensus        11 ~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv   90 (334)
T PF06027_consen   11 FWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDV   90 (334)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHH
Confidence            3444444334444445555555544443444 66666777766565666655554322 222222345666677888885


Q ss_pred             HHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           89 TLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        89 ~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                       .++.+.+.|+++++.+.+.++....-.+++++++++
T Consensus        91 -~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~f  126 (334)
T PF06027_consen   91 -EANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIF  126 (334)
T ss_pred             -HHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHH
Confidence             899999999999999999999999999999999864

Some of the sequences in this family are annotated as putative membrane proteins.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.36  E-value=0.0041  Score=47.96  Aligned_cols=113  Identities=10%  Similarity=-0.020  Sum_probs=83.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CCCHHHHHHHHHHHHHH
Q 040945           10 VGLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRP--PLTFALLCKVFILSLIG   87 (125)
Q Consensus        10 ~~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~--~~~~~~~~~l~~~gl~~   87 (125)
                      +...|.+.++.+++++|.+.+.-|...+ +.|+.+...+=-+.+.++..+.....++....  +++++.+..++ ...++
T Consensus       165 ~~i~GDll~l~~a~lya~~nV~~E~~v~-~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v-~~~~~  242 (334)
T PF06027_consen  165 NPILGDLLALLGAILYAVSNVLEEKLVK-KAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLV-GYALC  242 (334)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHH-HHHHH
Confidence            4578999999999999999999999887 78888888777778888777776655544332  34555444333 33334


Q ss_pred             HHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHh
Q 040945           88 ITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVI  124 (125)
Q Consensus        88 ~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~  124 (125)
                      ....|.+.-..++.++|....+-..+...++.+++++
T Consensus       243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~  279 (334)
T PF06027_consen  243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIF  279 (334)
T ss_pred             HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHH
Confidence            4567777888899999987777777888888887764

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.26  E-value=2.1e-05  Score=58.70  Aligned_cols=98  Identities=17%  Similarity=0.199  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 040945           23 CVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFS  102 (125)
Q Consensus        23 ~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~gl~~~  102 (125)
                      ..+.++....++.+  +.+|.+..-.|+++-.+...+..++.+..-+.+...|  +.++.-|+.|. -+..+.|+++++.
T Consensus        47 ~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R--~~LiLRg~mG~-tgvmlmyya~~~m  121 (346)
T KOG4510|consen   47 YFFNSCMVVSTKVL--ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR--KWLILRGFMGF-TGVMLMYYALMYM  121 (346)
T ss_pred             HHHhhHHHhhhhhh--ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE--EEEEeehhhhh-hHHHHHHHHHhhc
Confidence            66666666777665  4799999999987776666666655433221222222  34556677776 4667788999999


Q ss_pred             chHHHHHhhhhHHHHHHHHHHhC
Q 040945          103 SPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus       103 ~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      +-+.|++++++.|++++++||.+
T Consensus       122 slaDA~vItFssPvft~ifaw~~  144 (346)
T KOG4510|consen  122 SLADAVVITFSSPVFTIIFAWAF  144 (346)
T ss_pred             chhheEEEEecChHHHHHHHHHH
Confidence            99999999999999999999964

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=96.24  E-value=0.3  Score=37.01  Aligned_cols=104  Identities=14%  Similarity=0.084  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 040945           18 MVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKN--RPPLTFALLCKVFILSLIGITLMQICV   95 (125)
Q Consensus        18 ~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~gl~~~~~~~~~~   95 (125)
                      .+..++.||.++..=|..   ++|+.+-...-...-...-+..........  ...-+.+++..+...|... .++..++
T Consensus       153 al~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vT-avpL~lf  228 (293)
T COG2962         153 ALALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVT-AVPLLLF  228 (293)
T ss_pred             HHHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHH-HHHHHHH
Confidence            456678899999887763   467776665555444443333333332222  1113566778888888886 5999999


Q ss_pred             HHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           96 YTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        96 ~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      ..|-++++-+..+++.|..|....++|+++
T Consensus       229 ~~aa~~lpls~~G~lqYi~Ptl~fllav~i  258 (293)
T COG2962         229 AAAAKRLPLSTLGFLQYIEPTLMFLLAVLI  258 (293)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998763

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=96.00  E-value=0.21  Score=33.33  Aligned_cols=92  Identities=18%  Similarity=0.084  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 040945           13 VPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQ   92 (125)
Q Consensus        13 ~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~   92 (125)
                      .+++.++...++=+...++-|...+ +.+..+.....  .      ..... .      .++   ...++.|+....+++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~-~~g~~~~~~~~--~------~~~~~-~------~~p---~~~i~lgl~~~~la~   62 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMS-RLPLLSHAWDF--I------AALLA-F------GLA---LRAVLLGLAGYALSM   62 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHh-hCCCccchhHH--H------HHHHH-H------hcc---HHHHHHHHHHHHHHH
Confidence            3677888888888999999999987 44443322211  0      00000 0      111   225778999999999


Q ss_pred             HHHHHhhcccchHHHHHhhhhHHHHHHHHHH
Q 040945           93 ICVYTGVSFSSPTLASATNNLIPAFTFLLAV  123 (125)
Q Consensus        93 ~~~~~gl~~~~a~~a~il~~~~P~~~~lla~  123 (125)
                      .+|+.++++.+.+.+.-+.+..|..+.+.++
T Consensus        63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~   93 (129)
T PRK02971         63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAM   93 (129)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998888877766

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=95.89  E-value=0.051  Score=41.69  Aligned_cols=95  Identities=20%  Similarity=0.217  Sum_probs=73.6

Q ss_pred             HHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Q 040945           29 TTLSKAAIS--QGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTL  106 (125)
Q Consensus        29 ~~~~K~~~~--~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~gl~~~~a~~  106 (125)
                      .+..|..++  +.--|..++..+...+.+.....-.....+..+..++..+..++.+|++.. +..++-+.++++.+.+.
T Consensus        33 ~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~-~~~v~~n~Sl~~v~VsF  111 (316)
T KOG1441|consen   33 IILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFC-ISHVLGNVSLSYVPVSF  111 (316)
T ss_pred             EEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHH-HHHHhcchhhhccchhH
Confidence            345687777  456788999998888877776665443333222224456788899999985 89999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHh
Q 040945          107 ASATNNLIPAFTFLLAVI  124 (125)
Q Consensus       107 a~il~~~~P~~~~lla~~  124 (125)
                      .-.+=.++|.++.+++++
T Consensus       112 ~q~iKa~~P~~tvl~~~~  129 (316)
T KOG1441|consen  112 YQTIKALMPPFTVLLSVL  129 (316)
T ss_pred             HHHHHhhcchhHHHHHHH
Confidence            999999999999999875

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=95.68  E-value=0.43  Score=35.94  Aligned_cols=93  Identities=18%  Similarity=0.166  Sum_probs=67.0

Q ss_pred             HHHHHHHHhC-CCC--HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 040945           29 TTLSKAAISQ-GAT--PLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPT  105 (125)
Q Consensus        29 ~~~~K~~~~~-~~~--p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~gl~~~~a~  105 (125)
                      .+.-++...+ +..  |..+++.++....+.-.+.....++++   .++..+......+++.. ++..+.+.++++++.+
T Consensus        16 g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~al~~i~~p   91 (303)
T PF08449_consen   16 GILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPK---SRKIPLKKYAILSFLFF-LASVLSNAALKYISYP   91 (303)
T ss_pred             HHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccC---CCcChHHHHHHHHHHHH-HHHHHHHHHHHhCChH
Confidence            3444444442 444  889999999998877776654433122   22333556677777764 7889999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHhC
Q 040945          106 LASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus       106 ~a~il~~~~P~~~~lla~~~  125 (125)
                      .-.++=+..|+.++++++++
T Consensus        92 ~~~~~ks~~~i~vmi~~~l~  111 (303)
T PF08449_consen   92 TQIVFKSSKPIPVMILGVLI  111 (303)
T ss_pred             HHHHHhhhHHHHHHHHHHHh
Confidence            99999999999999998653

; GO: 0055085 transmembrane transport

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=95.65  E-value=0.57  Score=35.24  Aligned_cols=110  Identities=18%  Similarity=0.211  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH--hhcCC-C---CCCCHHHHHHHHHHHHH
Q 040945           14 PYAAMVAVQCVQVGITTLSKAAISQ-GATPLILAVYADAIASLILLPLSFF--LNRKN-R---PPLTFALLCKVFILSLI   86 (125)
Q Consensus        14 ~~l~~l~~~~~wg~~~~~~K~~~~~-~~~p~~~~~~r~~~a~~~l~~~~~~--~~~~~-~---~~~~~~~~~~l~~~gl~   86 (125)
                      |+.+++.+.++-|...+..++..++ +.++.+..++--..+.+...+....  .+... .   ...++..+..++...+.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            8999999999999999999998864 7899999999999988888877766  22111 0   11234455666666666


Q ss_pred             HHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHh
Q 040945           87 GITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVI  124 (125)
Q Consensus        87 ~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~  124 (125)
                      +. .+..+.+.-.++.||...+++..+--+++++++++
T Consensus       235 ~~-~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~  271 (303)
T PF08449_consen  235 GA-LGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVI  271 (303)
T ss_pred             HH-HHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHH
Confidence            64 66677777889999999999999999999888865

; GO: 0055085 transmembrane transport

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=95.49  E-value=0.1  Score=33.84  Aligned_cols=44  Identities=18%  Similarity=0.032  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           82 ILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        82 ~~gl~~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      ..++.+..+++.++..++++.+.+.+..+.++.|+++.+.|+++
T Consensus        41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~   84 (111)
T PRK15051         41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKL   84 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Confidence            34446677899999999999999999999999999999999864

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=95.19  E-value=0.58  Score=31.53  Aligned_cols=94  Identities=11%  Similarity=0.100  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040945           16 AAMVAVQCVQVGITTLSKAAISQGA-TPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQIC   94 (125)
Q Consensus        16 l~~l~~~~~wg~~~~~~K~~~~~~~-~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~   94 (125)
                      +..+.+...-+....+.-+.-+ .. +|...+++-+..+.+.+..+....+++...+.+..+| +...-|+++ ...-.+
T Consensus         4 lla~~aG~~i~~q~~~N~~L~~-~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~-w~~lGG~lG-~~~V~~   80 (138)
T PF04657_consen    4 LLALLAGALIALQAAFNGQLGK-ALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPW-WAYLGGLLG-VFFVLS   80 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCCh-HHhccHHHH-HHHHHH
Confidence            4455555555555555554443 34 5999999999999999988887766543322222222 233367776 477888


Q ss_pred             HHHhhcccchHHHHHhhh
Q 040945           95 VYTGVSFSSPTLASATNN  112 (125)
Q Consensus        95 ~~~gl~~~~a~~a~il~~  112 (125)
                      .....++.+++.+..+.-
T Consensus        81 ~~~~vp~lG~~~~~~l~~   98 (138)
T PF04657_consen   81 NIILVPRLGAALTTILIV   98 (138)
T ss_pred             HHHHhhhhhHHHHHHHHH
Confidence            889999999999887664

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=94.99  E-value=0.013  Score=44.13  Aligned_cols=109  Identities=13%  Similarity=0.080  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 040945           13 VPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQ   92 (125)
Q Consensus        13 ~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~   92 (125)
                      .+....+.+.+.-+..++..|..- ++.|......+=..++.+.-.+.+......++|+ .++||..+..+|++| .+++
T Consensus       191 ~gt~aai~s~lf~asvyIilR~iG-k~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~-cgkdr~l~~~lGvfg-figQ  267 (346)
T KOG4510|consen  191 PGTVAAISSVLFGASVYIILRYIG-KNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPH-CGKDRWLFVNLGVFG-FIGQ  267 (346)
T ss_pred             CchHHHHHhHhhhhhHHHHHHHhh-ccccEEEEehHHHHHHHHHHHHHHhhccceecCc-cccceEEEEEehhhh-hHHH
Confidence            345556666666666777777643 3556554444444444444444443334444443 567788888999998 4899


Q ss_pred             HHHHHhhcccchHHHHHhhhhHHHHHHHHHHh
Q 040945           93 ICVYTGVSFSSPTLASATNNLIPAFTFLLAVI  124 (125)
Q Consensus        93 ~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~  124 (125)
                      .+...|+|.--|+..++..++.-+++.....+
T Consensus       268 IllTm~lQiErAGpvaim~~~dvvfAf~wqv~  299 (346)
T KOG4510|consen  268 ILLTMGLQIERAGPVAIMTYTDVVFAFFWQVL  299 (346)
T ss_pred             HHHHHHhhhhccCCeehhhHHHHHHHHHHHHH
Confidence            99999999999999999999999998876654

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=94.84  E-value=1  Score=33.86  Aligned_cols=106  Identities=8%  Similarity=-0.076  Sum_probs=73.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 040945           11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITL   90 (125)
Q Consensus        11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~   90 (125)
                      ..++.+.++++.+.+..+..+.|..   +.||.+..+=+.+.-.+.-..+....+++   ..+++.++. +..|++= .+
T Consensus       136 ~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~a~i~~~~~~~~---~~~k~~~~n-il~G~~w-~i  207 (269)
T PF06800_consen  136 MKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIGAFIFNLFSKKP---FFEKKSWKN-ILTGLIW-GI  207 (269)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHHHHHHhhccccc---ccccchHHh-hHHHHHH-HH
Confidence            3568888999999999999998863   57887777666443333323332222221   223344444 3455554 37


Q ss_pred             HHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHh
Q 040945           91 MQICVYTGVSFSSPTLASATNNLIPAFTFLLAVI  124 (125)
Q Consensus        91 ~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~  124 (125)
                      ++.+++.+.+..+.+.+=.+..+.++++.+-+.+
T Consensus       208 gnl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~  241 (269)
T PF06800_consen  208 GNLFYLISAQKNGVATAFTLSQLGVVISTLGGIF  241 (269)
T ss_pred             HHHHHHHhHHhccchhhhhHHhHHHHHHHhhhhe
Confidence            8999999999999999999999999998887754

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=94.18  E-value=0.37  Score=37.93  Aligned_cols=101  Identities=16%  Similarity=0.122  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCCCCHHHHHHHHHHHH
Q 040945           12 LVPYAAMVAVQCVQVGITTLSKAAISQG---ATPLILAVYADAIASLILLPLSFFLNR---KNRPPLTFALLCKVFILSL   85 (125)
Q Consensus        12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~---~~p~~~~~~r~~~a~~~l~~~~~~~~~---~~~~~~~~~~~~~l~~~gl   85 (125)
                      ..|.++.+.+++.+|.+..+.|+-.+++   +|--.+-.+--++..++++|..++.+.   ++..-.+..+...++..++
T Consensus       246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~l  325 (416)
T KOG2765|consen  246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNL  325 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhH
Confidence            6799999999999999999999866532   444444445556677788876655432   2222234445677889999


Q ss_pred             HHHHHHHHHHHHhhcccchHHHHHhhh
Q 040945           86 IGITLMQICVYTGVSFSSPTLASATNN  112 (125)
Q Consensus        86 ~~~~~~~~~~~~gl~~~~a~~a~il~~  112 (125)
                      +++.+.-++|.+|.-.++|-.+.+=.+
T Consensus       326 igtvvSDylW~~a~~lTs~Lv~TlgmS  352 (416)
T KOG2765|consen  326 IGTVVSDYLWAKAVLLTSPLVVTLGMS  352 (416)
T ss_pred             HHHHHHHHHHHHHHHhccchhheeeee
Confidence            999999999999999999887776554

>PRK13499 rhamnose-proton symporter; Provisional

Probab=91.76  E-value=2  Score=33.45  Aligned_cols=107  Identities=8%  Similarity=-0.014  Sum_probs=62.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--HHHHHH--HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 040945           12 LVPYAAMVAVQCVQVGITTLSKAAISQGAT--PLILAV--YADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIG   87 (125)
Q Consensus        12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~--p~~~~~--~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~   87 (125)
                      ..+++++++++++||+.+.-.|+ .+ +.+  .+..+.  +..+.....+..+.....-......+.+.+..-+..|++=
T Consensus         6 ~~G~~~~~i~~~~~GS~~~p~K~-~k-~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~W   83 (345)
T PRK13499          6 ILGIIWHLIGGASSGSFYAPFKK-VK-KWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGALW   83 (345)
T ss_pred             HHHHHHHHHHHHHhhcccccccc-cC-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHHH
Confidence            56899999999999999999998 33 444  222210  1111111111111100000111224666777777777775


Q ss_pred             HHHHHHHHHHhhcccchHHHHHhh-hhHHHHHHHH
Q 040945           88 ITLMQICVYTGVSFSSPTLASATN-NLIPAFTFLL  121 (125)
Q Consensus        88 ~~~~~~~~~~gl~~~~a~~a~il~-~~~P~~~~ll  121 (125)
                       .+.+..++.++++.+.|.+--+. -++-+...++
T Consensus        84 -~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~  117 (345)
T PRK13499         84 -GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLM  117 (345)
T ss_pred             -HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence             48999999999999988876444 3444444443

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=91.74  E-value=0.5  Score=30.95  Aligned_cols=86  Identities=14%  Similarity=0.047  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040945           19 VAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTG   98 (125)
Q Consensus        19 l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~g   98 (125)
                      ++++++||.+.++.|++.+ +.++..-.. |..-....     +.        .+++.+..+   .+=  -.+...|+..
T Consensus         2 l~Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~-----Ll--------~n~~y~ipf---~lN--q~GSv~f~~~   61 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKF-----LL--------LNPKYIIPF---LLN--QSGSVLFFLL   61 (113)
T ss_pred             eeehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHH-----HH--------HhHHHHHHH---HHH--HHHHHHHHHH
Confidence            4578999999999999887 555554442 32211111     01        123333322   221  2356788899


Q ss_pred             hcccchHHHHHhh-hhHHHHHHHHHHh
Q 040945           99 VSFSSPTLASATN-NLIPAFTFLLAVI  124 (125)
Q Consensus        99 l~~~~a~~a~il~-~~~P~~~~lla~~  124 (125)
                      +...+-|.+.-+. ++.=+++++.+++
T Consensus        62 L~~~dlSlavPi~Nsl~fvfT~l~g~~   88 (113)
T PF10639_consen   62 LGSADLSLAVPIANSLAFVFTALTGWL   88 (113)
T ss_pred             HhcCCceeeehHHhHHHHHHHHHHHHH
Confidence            9999999999885 6778888887764

Many members are annotated as potential transmembrane proteins.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=91.73  E-value=4.8  Score=31.03  Aligned_cols=103  Identities=16%  Similarity=0.246  Sum_probs=75.7

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHH-HHHHHhhcCCC----C-CCCHHHH
Q 040945            7 QLVVGLVPYAAMVAVQCVQVGITTLSKAAIS---QGATPLILAVYADAIASLILL-PLSFFLNRKNR----P-PLTFALL   77 (125)
Q Consensus         7 ~~~~~~~~~l~~l~~~~~wg~~~~~~K~~~~---~~~~p~~~~~~r~~~a~~~l~-~~~~~~~~~~~----~-~~~~~~~   77 (125)
                      +...++.|...+.++.+..+.-.++.|..+.   +..|++.+..+.--.+.++++ |+....+....    . ..+... 
T Consensus       157 e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~-  235 (316)
T KOG1441|consen  157 ELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTF-  235 (316)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhh-
Confidence            4567889999999999999999999999883   369999999999999999999 88766543322    1 233333 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhh
Q 040945           78 CKVFILSLIGITLMQICVYTGVSFSSPTLASATN  111 (125)
Q Consensus        78 ~~l~~~gl~~~~~~~~~~~~gl~~~~a~~a~il~  111 (125)
                      .......++. .+.+...|..+.+++|-.-++..
T Consensus       236 ~~~~~~sv~~-f~~Nls~f~~ig~tSalT~~V~g  268 (316)
T KOG1441|consen  236 LILLLNSVLA-FLLNLSAFLVIGRTSALTYSVAG  268 (316)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHcccCchhhhhhc
Confidence            3333444443 46788888999999887655543

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.60  E-value=9.5  Score=29.38  Aligned_cols=111  Identities=19%  Similarity=0.167  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 040945           12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAV--YADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGIT   89 (125)
Q Consensus        12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~--~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~   89 (125)
                      ..+....+.=+++--...+..|.++...--|..+..  .|.....+.+...-+. +--+.++++++..+..+...++-. 
T Consensus        11 ~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~lv~~~~l~~~~~kk~~P~~~lf~-   88 (314)
T KOG1444|consen   11 SSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-GLVNFRPLDLRTAKKWFPVSLLFV-   88 (314)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-ceeecCCcChHHHHHHccHHHHHH-
Confidence            334444444444555566778888875444554444  8888877766665433 222345677888888887787753 


Q ss_pred             HHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHh
Q 040945           90 LMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVI  124 (125)
Q Consensus        90 ~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~  124 (125)
                      .....--.++|+.+...-.++=+..|+++++....
T Consensus        89 ~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~l  123 (314)
T KOG1444|consen   89 GMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVL  123 (314)
T ss_pred             HHHHHccccccccCchHHHHHhhchHHHHHHhHHh
Confidence            44455557789999999999999999999876543

>PRK13499 rhamnose-proton symporter; Provisional

Probab=84.46  E-value=17  Score=28.32  Aligned_cols=111  Identities=15%  Similarity=0.037  Sum_probs=61.0

Q ss_pred             hhHHHHHHHHHHHHHHHHH-------HHHHHHHhCCCCHHHHHHHHHH---HHHHHHH-HHHHHh--hcCCC-----CCC
Q 040945           11 GLVPYAAMVAVQCVQVGIT-------TLSKAAISQGATPLILAVYADA---IASLILL-PLSFFL--NRKNR-----PPL   72 (125)
Q Consensus        11 ~~~~~l~~l~~~~~wg~~~-------~~~K~~~~~~~~p~~~~~~r~~---~a~~~l~-~~~~~~--~~~~~-----~~~   72 (125)
                      ..++.+.++++.+..+.+.       +..+.+...+.+|.....-++.   .+..+.- ..+..+  ++++.     .+-
T Consensus       172 ~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~  251 (345)
T PRK13499        172 LKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSL  251 (345)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccc
Confidence            3678899999999999988       7776655557888877776665   4443333 222222  22221     111


Q ss_pred             CHHHHHHH----HHHHHHHHHHHHHHHHHhhcccchHHHHH---hh-hhHHHHHHHHH
Q 040945           73 TFALLCKV----FILSLIGITLMQICVYTGVSFSSPTLASA---TN-NLIPAFTFLLA  122 (125)
Q Consensus        73 ~~~~~~~l----~~~gl~~~~~~~~~~~~gl~~~~a~~a~i---l~-~~~P~~~~lla  122 (125)
                      +++.+.+-    ...|+.= .+.+.+|..|-+..+...+.+   +. .+.-+++.+-+
T Consensus       252 ~~~~~~~n~l~~~l~G~~W-~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwG  308 (345)
T PRK13499        252 AKPLLITNVLLSALAGVMW-YLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWG  308 (345)
T ss_pred             cchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhh
Confidence            21222222    2333332 356778888887775554444   44 44445555444

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=84.37  E-value=4.2  Score=29.97  Aligned_cols=52  Identities=15%  Similarity=0.187  Sum_probs=44.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945           73 TFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF  125 (125)
Q Consensus        73 ~~~~~~~l~~~gl~~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~  125 (125)
                      ++++...+.+=+++. .+.+.+.+.++++.+|+.-.++..+-.++++++++++
T Consensus        13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~   64 (244)
T PF04142_consen   13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLL   64 (244)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHH
Confidence            466777777777876 4899999999999999999999999999999998763

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=81.86  E-value=1.1  Score=33.51  Aligned_cols=91  Identities=13%  Similarity=0.111  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040945           14 PYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQI   93 (125)
Q Consensus        14 ~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~   93 (125)
                      .++.+++-++.||......-+-   +=+|.+-+.-....|.++-..+.++ .   .|..+.+.+..-++.|++= ...+.
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~-~---~p~~T~~~~iv~~isG~~W-s~GQ~   74 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLF-V---SPELTLTIFIVGFISGAFW-SFGQA   74 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHhee-e---cCccchhhHHHHHHhhhHh-hhhhh
Confidence            4677889999999998876652   4566665555444444444443333 2   2345666666666666664 47899


Q ss_pred             HHHHhhcccchHHHHHhhh
Q 040945           94 CVYTGVSFSSPTLASATNN  112 (125)
Q Consensus        94 ~~~~gl~~~~a~~a~il~~  112 (125)
                      .++.+.++.+.|++.-+.+
T Consensus        75 ~Qfka~~~iGVSkamPiSt   93 (288)
T COG4975          75 NQFKAIQLIGVSKAMPIST   93 (288)
T ss_pred             hhhhheeeeeeeccccccc
Confidence            9999999999999886664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	96.49
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	96.01

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=96.49  E-value=0.003  Score=41.73  Aligned_cols=44  Identities=14%  Similarity=0.064  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcccchHHHHHh-hhhHHHHHHHHHHhC
Q 040945           82 ILSLIGITLMQICVYTGVSFSSPTLASAT-NNLIPAFTFLLAVIF  125 (125)
Q Consensus        82 ~~gl~~~~~~~~~~~~gl~~~~a~~a~il-~~~~P~~~~lla~~~  125 (125)
                      ..|++++.+++.+++.++++.+++.+..+ .++.|++++++++++
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~   78 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF   78 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888999999999999999999888 899999999999763

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=96.01  E-value=0.1  Score=32.81  Aligned_cols=44  Identities=14%  Similarity=0.064  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHhhcccchHHHHHh-hhhHHHHHHHHHHhC
Q 040945           82 ILSLIGITLMQICVYTGVSFSSPTLASAT-NNLIPAFTFLLAVIF  125 (125)
Q Consensus        82 ~~gl~~~~~~~~~~~~gl~~~~a~~a~il-~~~~P~~~~lla~~~  125 (125)
                      ..++.+..+++.++..++|+.+.+.+..+ ..+.|+++.++++++
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~   78 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF   78 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHH
Confidence            46666777899999999999999999877 899999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00