Citrus Sinensis ID: 040983

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAKELKH
Secondary Structure (PSIPRED)
ccccHHHHHHcEEEEcccccccccccccccEEccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccEEEEEccccccHHHccHHHccccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
LTAVTQlahhdmlflplgynfgrgmfkldevkggssygagrfaadgsrqpAELELEQAFHQGEYVGEIAKELKH
Flexible Loop (DISEMBL)
ltavtqlahhdmlFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAKELKH
Low Complexity Region (SEG)
LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAKELKH
Disordered region (IsUnstruct)
*****QLAHHDMLFLPLGYNFGRGMFKLDEVKGG****************************************
Disordered Region (DISOPRED)
LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYG****************LEQAFHQGEYVGEIAKELK*
Disordered Region (DISEMBL)
LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAKELKH
Disordered Region (DISPRO)
LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAKELKH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAKELKH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	74	2.2.26 [Sep-21-2011]
Q8Z7N9	198	Flavoprotein WrbA OS=Salm	N/A	no	0.918	0.343	0.471	1e-10
B5YU47	198	Flavoprotein WrbA OS=Esch	yes	no	0.918	0.343	0.471	2e-10
Q8X4B4	198	Putative flavoprotein Wrb	N/A	no	0.918	0.343	0.471	2e-10
Q3Z3B7	201	Flavoprotein WrbA OS=Shig	yes	no	0.918	0.338	0.471	2e-10
Q32HQ6	198	Flavoprotein WrbA OS=Shig	yes	no	0.918	0.343	0.471	2e-10
P0A8G8	198	Flavoprotein WrbA OS=Shig	yes	no	0.918	0.343	0.471	2e-10
Q0T630	198	Flavoprotein WrbA OS=Shig	yes	no	0.918	0.343	0.471	2e-10
Q1RDL3	198	Flavoprotein WrbA OS=Esch	yes	no	0.918	0.343	0.471	2e-10
B1LJ00	198	Flavoprotein WrbA OS=Esch	yes	no	0.918	0.343	0.471	2e-10
B6I980	198	Flavoprotein WrbA OS=Esch	yes	no	0.918	0.343	0.471	2e-10

>sp|Q8Z7N9|WRBA_SALTI Flavoprotein WrbA OS=Salmonella typhi GN=wrbA PE=3 SV=3

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 2/70 (2%)

Query: 5   TQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGE 63
           T LAHH M+ +P+GY+  + +F + +V+GG+ YGA   A  DGSRQP++ EL  A +QGE
Sbjct: 129 TTLAHHGMVIVPIGYS-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGE 187

Query: 64  YVGEIAKELK 73
           YV  +A +L 
Sbjct: 188 YVAGLAVKLN 197

Seems to enhance the formation and/or stability of noncovalent complexes between the trp repressor protein and operator-bearing DNA.
Salmonella typhi (taxid: 90370)

>sp|B5YU47|WRBA_ECO5E Flavoprotein WrbA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=wrbA PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)

Query: 5   TQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGE 63
           T LAHH M+ +P+GY   + +F + +V+GG+ YGA   A  DGSRQP++ EL  A +QGE
Sbjct: 129 TTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGE 187

Query: 64  YVGEIAKELK 73
           YV  +A +L 
Sbjct: 188 YVAGLAVKLN 197

Seems to enhance the formation and/or stability of noncovalent complexes between the trp repressor protein and operator-bearing DNA.

Escherichia coli O157:H7 (strain EC4115 / EHEC) (taxid: 444450)

>sp|Q8X4B4|WRBA_ECO57 Putative flavoprotein WrbA OS=Escherichia coli O157:H7 GN=wrbA PE=5 SV=3

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)

Query: 5   TQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGE 63
           T LAHH M+ +P+GY   + +F + +V+GG+ YGA   A  DGSRQP++ EL  A +QGE
Sbjct: 129 TTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGE 187

Query: 64  YVGEIAKELK 73
           YV  +A +L 
Sbjct: 188 YVAGLAVKLN 197

Seems to enhance the formation and/or stability of noncovalent complexes between the trp repressor protein and operator-bearing DNA.

Escherichia coli O157:H7 (taxid: 83334)

>sp|Q3Z3B7|WRBA_SHISS Flavoprotein WrbA OS=Shigella sonnei (strain Ss046) GN=wrbA PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)

Query: 5   TQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGE 63
           T LAHH M+ +P+GY   + +F + +V+GG+ YGA   A  DGSRQP++ EL  A +QGE
Sbjct: 132 TTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGE 190

Query: 64  YVGEIAKELK 73
           YV  +A +L 
Sbjct: 191 YVAGLAVKLN 200

Seems to enhance the formation and/or stability of noncovalent complexes between the trp repressor protein and operator-bearing DNA.

Shigella sonnei (strain Ss046) (taxid: 300269)

>sp|Q32HQ6|WRBA_SHIDS Flavoprotein WrbA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=wrbA PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)

Query: 5   TQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGE 63
           T LAHH M+ +P+GY   + +F + +V+GG+ YGA   A  DGSRQP++ EL  A +QGE
Sbjct: 129 TTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGE 187

Query: 64  YVGEIAKELK 73
           YV  +A +L 
Sbjct: 188 YVAGLAVKLN 197

Seems to enhance the formation and/or stability of noncovalent complexes between the trp repressor protein and operator-bearing DNA.

Shigella dysenteriae serotype 1 (strain Sd197) (taxid: 300267)

>sp|P0A8G8|WRBA_SHIFL Flavoprotein WrbA OS=Shigella flexneri GN=wrbA PE=3 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)

Query: 5   TQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGE 63
           T LAHH M+ +P+GY   + +F + +V+GG+ YGA   A  DGSRQP++ EL  A +QGE
Sbjct: 129 TTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGE 187

Query: 64  YVGEIAKELK 73
           YV  +A +L 
Sbjct: 188 YVAGLAVKLN 197

Seems to enhance the formation and/or stability of noncovalent complexes between the trp repressor protein and operator-bearing DNA.

Shigella flexneri (taxid: 623)

>sp|Q0T630|WRBA_SHIF8 Flavoprotein WrbA OS=Shigella flexneri serotype 5b (strain 8401) GN=wrbA PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)

Query: 5   TQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGE 63
           T LAHH M+ +P+GY   + +F + +V+GG+ YGA   A  DGSRQP++ EL  A +QGE
Sbjct: 129 TTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGE 187

Query: 64  YVGEIAKELK 73
           YV  +A +L 
Sbjct: 188 YVAGLAVKLN 197

Seems to enhance the formation and/or stability of noncovalent complexes between the trp repressor protein and operator-bearing DNA.

Shigella flexneri serotype 5b (strain 8401) (taxid: 373384)

>sp|Q1RDL3|WRBA_ECOUT Flavoprotein WrbA OS=Escherichia coli (strain UTI89 / UPEC) GN=wrbA PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)

Query: 5   TQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGE 63
           T LAHH M+ +P+GY   + +F + +V+GG+ YGA   A  DGSRQP++ EL  A +QGE
Sbjct: 129 TTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGE 187

Query: 64  YVGEIAKELK 73
           YV  +A +L 
Sbjct: 188 YVAGLAVKLN 197

Seems to enhance the formation and/or stability of noncovalent complexes between the trp repressor protein and operator-bearing DNA.

Escherichia coli (strain UTI89 / UPEC) (taxid: 364106)

>sp|B1LJ00|WRBA_ECOSM Flavoprotein WrbA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=wrbA PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)

Query: 5   TQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGE 63
           T LAHH M+ +P+GY   + +F + +V+GG+ YGA   A  DGSRQP++ EL  A +QGE
Sbjct: 129 TTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGE 187

Query: 64  YVGEIAKELK 73
           YV  +A +L 
Sbjct: 188 YVAGLAVKLN 197

Seems to enhance the formation and/or stability of noncovalent complexes between the trp repressor protein and operator-bearing DNA.

Escherichia coli (strain SMS-3-5 / SECEC) (taxid: 439855)

>sp|B6I980|WRBA_ECOSE Flavoprotein WrbA OS=Escherichia coli (strain SE11) GN=wrbA PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)

Query: 5   TQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGE 63
           T LAHH M+ +P+GY   + +F + +V+GG+ YGA   A  DGSRQP++ EL  A +QGE
Sbjct: 129 TTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGE 187

Query: 64  YVGEIAKELK 73
           YV  +A +L 
Sbjct: 188 YVAGLAVKLN 197

Seems to enhance the formation and/or stability of noncovalent complexes between the trp repressor protein and operator-bearing DNA.

Escherichia coli (strain SE11) (taxid: 409438)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
255569313	203	Flavoprotein wrbA, putative [Ricinus com	0.986	0.359	0.767	9e-27
388499250	204	unknown [Lotus japonicus]	1.0	0.362	0.729	5e-26
224106287	203	predicted protein [Populus trichocarpa]	0.986	0.359	0.767	6e-26
356553062	203	PREDICTED: flavoprotein wrbA-like [Glyci	0.986	0.359	0.739	1e-25
357490641	203	Flavoprotein wrbA [Medicago truncatula]	0.972	0.354	0.736	2e-25
225434636	211	PREDICTED: flavoprotein wrbA isoform 1 [	0.986	0.345	0.698	1e-24
297799264	205	quinone reductase family protein [Arabid	0.986	0.356	0.698	2e-24
118485421	203	unknown [Populus trichocarpa]	0.986	0.359	0.698	2e-24
15239652	204	flavodoxin-like quinone reductase 1 [Ara	0.986	0.357	0.698	2e-24
224124152	203	predicted protein [Populus trichocarpa]	0.986	0.359	0.698	2e-24

>gi|255569313|ref|XP_002525624.1| Flavoprotein wrbA, putative [Ricinus communis] gi|223535060|gb|EEF36742.1| Flavoprotein wrbA, putative [Ricinus communis]

 Score =  124 bits (310), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 67/73 (91%)

Query: 1   LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFH 60
           LTA+TQLAHH MLF+PLGY FG GMF+++EVKGGSSYGAG +AADG+R+P ELEL+QAFH
Sbjct: 130 LTAITQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTYAADGTREPTELELQQAFH 189

Query: 61  QGEYVGEIAKELK 73
           QG+YV EIAK+LK
Sbjct: 190 QGKYVAEIAKKLK 202

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499250|gb|AFK37691.1| unknown [Lotus japonicus]

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 54/74 (72%), Positives = 66/74 (89%)

Query: 1   LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFH 60
           LT +TQLAHH MLF+PLGY FG GMF++DEVKGGS+YGAG FA DGSRQP ELEL+QAF+
Sbjct: 131 LTTITQLAHHGMLFVPLGYTFGTGMFEMDEVKGGSAYGAGTFAGDGSRQPTELELQQAFY 190

Query: 61  QGEYVGEIAKELKH 74
           QG+Y+ EIA++LK+
Sbjct: 191 QGKYIAEIARKLKN 204

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106287|ref|XP_002314113.1| predicted protein [Populus trichocarpa] gi|222850521|gb|EEE88068.1| predicted protein [Populus trichocarpa]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 65/73 (89%)

Query: 1   LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFH 60
            TA+TQLAHH MLF+PLGY FG GMF++ EVKGGSSYGAG FAADGSRQP+ELEL+QAF+
Sbjct: 130 FTAITQLAHHGMLFVPLGYTFGSGMFEMGEVKGGSSYGAGTFAADGSRQPSELELQQAFY 189

Query: 61  QGEYVGEIAKELK 73
           QG+YV EI K+LK
Sbjct: 190 QGKYVSEITKKLK 202

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553062|ref|XP_003544877.1| PREDICTED: flavoprotein wrbA-like [Glycine max]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/73 (73%), Positives = 65/73 (89%)

Query: 1   LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFH 60
           LTA+TQLAHH MLF+PLGY FG GMF++DEVKGGS+YGAG FA DGSRQP ELEL+QAF+
Sbjct: 130 LTAITQLAHHGMLFVPLGYTFGSGMFEIDEVKGGSAYGAGTFAGDGSRQPTELELQQAFY 189

Query: 61  QGEYVGEIAKELK 73
           QG+Y+ E+ K+LK
Sbjct: 190 QGKYLAEVTKKLK 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357490641|ref|XP_003615608.1| Flavoprotein wrbA [Medicago truncatula] gi|355516943|gb|AES98566.1| Flavoprotein wrbA [Medicago truncatula] gi|388503242|gb|AFK39687.1| unknown [Medicago truncatula]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 65/72 (90%)

Query: 2   TAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFHQ 61
           TA+TQLAHH ML++PLGY FG GMF++DEVKGGS+YGAG FA DG+RQP ELEL+QAF+Q
Sbjct: 131 TAITQLAHHGMLYVPLGYTFGSGMFEMDEVKGGSAYGAGTFAGDGTRQPTELELQQAFYQ 190

Query: 62  GEYVGEIAKELK 73
           G+Y+ EIAK+LK
Sbjct: 191 GKYIAEIAKKLK 202

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434636|ref|XP_002279668.1| PREDICTED: flavoprotein wrbA isoform 1 [Vitis vinifera] gi|297745921|emb|CBI15977.3| unnamed protein product [Vitis vinifera]

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 65/73 (89%)

Query: 1   LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFH 60
           LT +T+LAHH M+++PLGY FG+GMF+++EVKGGSSYGAG +A DGSRQP ELEL+QAF+
Sbjct: 130 LTTITKLAHHGMIYVPLGYTFGKGMFEMNEVKGGSSYGAGTYAGDGSRQPTELELQQAFY 189

Query: 61  QGEYVGEIAKELK 73
           QG+YV EI K+LK
Sbjct: 190 QGKYVAEIVKKLK 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799264|ref|XP_002867516.1| quinone reductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297313352|gb|EFH43775.1| quinone reductase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 62/73 (84%)

Query: 1   LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFH 60
           LTA+TQL HH M+F+P+GY FG GMF+++ VKGGS YGAG FA DGSRQP ELELEQAFH
Sbjct: 128 LTAITQLVHHGMIFVPIGYTFGAGMFEMENVKGGSPYGAGTFAGDGSRQPTELELEQAFH 187

Query: 61  QGEYVGEIAKELK 73
           QG+Y+  I+K+LK
Sbjct: 188 QGKYIAAISKKLK 200

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485421|gb|ABK94567.1| unknown [Populus trichocarpa]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 62/73 (84%)

Query: 1   LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFH 60
           LTA+TQL HH M+F+P+GY FG GMF++++VKGGS YGAG FA DGSRQP ELELEQAFH
Sbjct: 128 LTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFH 187

Query: 61  QGEYVGEIAKELK 73
           QG+Y+  I K+LK
Sbjct: 188 QGKYIAAITKKLK 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239652|ref|NP_200261.1| flavodoxin-like quinone reductase 1 [Arabidopsis thaliana] gi|8885593|dbj|BAA97523.1| 1,4-benzoquinone reductase-like; Trp repressor binding protein-like [Arabidopsis thaliana] gi|21539481|gb|AAM53293.1| 1,4-benzoquinone reductase-like protein [Arabidopsis thaliana] gi|25084252|gb|AAN72205.1| 1,4-benzoquinone reductase-like protein [Arabidopsis thaliana] gi|332009119|gb|AED96502.1| flavodoxin-like quinone reductase 1 [Arabidopsis thaliana]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 61/73 (83%)

Query: 1   LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFH 60
           LTA+TQL HH MLF+P+GY FG GMF+++ VKGGS YGAG FA DGSRQP ELEL+QAFH
Sbjct: 128 LTAITQLVHHGMLFVPIGYTFGAGMFEMENVKGGSPYGAGTFAGDGSRQPTELELQQAFH 187

Query: 61  QGEYVGEIAKELK 73
           QG+Y+  I K+LK
Sbjct: 188 QGQYIASITKKLK 200

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124152|ref|XP_002319258.1| predicted protein [Populus trichocarpa] gi|222857634|gb|EEE95181.1| predicted protein [Populus trichocarpa]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 62/73 (84%)

Query: 1   LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFH 60
           LTA+TQL HH M+F+P+GY FG GMF++++VKGGS YGAG FA DGSRQP ELELEQAFH
Sbjct: 128 LTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFH 187

Query: 61  QGEYVGEIAKELK 73
           QG+Y+  I K+LK
Sbjct: 188 QGKYIAAITKKLK 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
TAIR|locus:2131749	205	AT4G27270 [Arabidopsis thalian	0.986	0.356	0.684	7.6e-25
TAIR|locus:2178868	207	AT5G58800 [Arabidopsis thalian	0.986	0.352	0.616	9e-22
TAIR|locus:2115405	273	AT4G36750 [Arabidopsis thalian	0.959	0.260	0.619	1.7e-20
UNIPROTKB|P0A8G6	198	wrbA [Escherichia coli K-12 (t	0.905	0.338	0.478	1.7e-11
ASPGD|ASPL0000059021	204	AN0297 [Emericella nidulans (t	0.851	0.308	0.507	2.2e-11
CGD|CAL0003651	288	YCP4 [Candida albicans (taxid:	0.905	0.232	0.542	5e-11
CGD|CAL0003649	199	PST3 [Candida albicans (taxid:	0.851	0.316	0.507	5.8e-11
UNIPROTKB|G4MTI8	204	MGG_01569 "Minor allergen Alt	0.945	0.343	0.465	5.8e-11
POMBASE|SPAC3C7.14c	202	obr1 "ubiquitinated histone-li	0.851	0.311	0.523	1.2e-10
SGD|S000002439	198	PST2 "Protein with similarity	0.945	0.353	0.452	6.6e-10

TAIR|locus:2131749 AT4G27270 [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 50/73 (68%), Positives = 61/73 (83%)

Query:     1 LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFH 60
             LTA+TQL HH M+F+P+GY FG GMF+++ VKGGS YGAG FA DGSRQP ELEL QAFH
Sbjct:   128 LTAITQLVHHGMIFVPIGYTFGAGMFEMENVKGGSPYGAGTFAGDGSRQPTELELGQAFH 187

Query:    61 QGEYVGEIAKELK 73
             QG+Y+  I+K+LK
Sbjct:   188 QGKYIAAISKKLK 200

GO:0005737 "cytoplasm" evidence=ISM

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2178868 AT5G58800 [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 45/73 (61%), Positives = 61/73 (83%)

Query:     1 LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFH 60
             LTAVT+LAHH M+F+P+GY FG+ M+++ EVKGGS YG+G +AADGSR+P ELE++QA +
Sbjct:   130 LTAVTKLAHHGMIFVPVGYTFGKSMYEMGEVKGGSPYGSGTYAADGSREPTELEIQQANY 189

Query:    61 QGEYVGEIAKELK 73
              G+Y   IAK+LK
Sbjct:   190 HGKYFAGIAKKLK 202

GO:0005737 "cytoplasm" evidence=ISM

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2115405 AT4G36750 [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 44/71 (61%), Positives = 52/71 (73%)

Query:     2 TAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFHQ 61
             TA+TQL HH MLF+P+GY FG GMFK+D ++GGS YGAG FA DGSR+  E EL  A HQ
Sbjct:   200 TAITQLVHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAGDGSREATETELALAEHQ 259

Query:    62 GEYVGEIAKEL 72
             G Y+  I K L
Sbjct:   260 GNYMAAIVKRL 270

GO:0005737 "cytoplasm" evidence=ISM

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|P0A8G6 wrbA [Escherichia coli K-12 (taxid:83333)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 33/69 (47%), Positives = 47/69 (68%)

Query:     5 TQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGE 63
             T LAHH M+ +P+GY   + +F + +V+GG+ YGA   A  DGSRQP++ EL  A +QGE
Sbjct:   129 TTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGE 187

Query:    64 YVGEIAKEL 72
             YV  +A +L
Sbjct:   188 YVAGLAVKL 196

GO:0003955 "NAD(P)H dehydrogenase (quinone) activity" evidence=IDA;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0042802 "identical protein binding" evidence=IPI

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0010181 "FMN binding" evidence=IEA;IDA

GO:0006979 "response to oxidative stress" evidence=IEP

ASPGD|ASPL0000059021 AN0297 [Emericella nidulans (taxid:162425)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 33/65 (50%), Positives = 45/65 (69%)

Query:     1 LTAVTQLAHHDMLFLPLGYNFGRGMFK-LDEVKGGSSYGAGRFA-ADGSRQPAELELEQA 58
             + A++ L HH  L++PLGY     +   L+E+ GGS++GAG FA ADGSRQP +LELE A
Sbjct:   128 IAAMSTLTHHGFLYVPLGYKTAFPLLSNLEEIHGGSAWGAGTFAGADGSRQPTKLELEIA 187

Query:    59 FHQGE 63
               QG+
Sbjct:   188 ETQGK 192

GO:0005622 "intracellular" evidence=IDA

GO:0005576 "extracellular region" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030466 "chromatin silencing at silent mating-type cassette" evidence=IEA

GO:0071238 "cellular response to brefeldin A" evidence=IEA

CGD|CAL0003651 YCP4 [Candida albicans (taxid:5476)]

 Score = 156 (60.0 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 38/70 (54%), Positives = 45/70 (64%)

Query:     7 LAHHDMLFLPLGY-NFGRGMFKLDEVKGGSSYGAGRFA-ADGSRQPAELELEQAFHQGE- 63
             LAHH M ++PLGY N       ++EV GGS YGAG FA  DGSRQP+ LELE A  QGE 
Sbjct:   132 LAHHGMPYIPLGYANAFALQSSMEEVHGGSPYGAGTFANVDGSRQPSTLELEIAEKQGEA 191

Query:    64 YVGEIAKELK 73
             +V    K +K
Sbjct:   192 FVKSATKLVK 201

GO:0045121 "membrane raft" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

CGD|CAL0003649 PST3 [Candida albicans (taxid:5476)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 33/65 (50%), Positives = 44/65 (67%)

Query:     1 LTAVTQLAHHDMLFLPLGYNFGRGM-FKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQA 58
             + A++ L HH ++F+PLGY     +   L+E+ GGS YGAG FA  DGSRQP +LE E A
Sbjct:   127 VNALSVLVHHGIIFVPLGYAKAFPLQTNLEEIHGGSPYGAGTFAGVDGSRQPTKLEKEIA 186

Query:    59 FHQGE 63
             F QG+
Sbjct:   187 FIQGK 191

GO:0005634 "nucleus" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0030466 "chromatin silencing at silent mating-type cassette" evidence=IEA

GO:0071238 "cellular response to brefeldin A" evidence=IEA

UNIPROTKB|G4MTI8 MGG_01569 "Minor allergen Alt a 7" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 34/73 (46%), Positives = 48/73 (65%)

Query:     1 LTAVTQLAHHDMLFLPLGYNFGRGM-FKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQA 58
             + A++  AHH ++++PLGY    G+   L E +GGS +GAG FA  DGSRQP+E ELE A
Sbjct:   129 IAAMSTFAHHGIIYVPLGYTKCFGIQTDLSEARGGSPWGAGTFAGGDGSRQPSEKELELA 188

Query:    59 FHQGE-YVGEIAK 70
               QGE +   ++K
Sbjct:   189 RIQGEEFYNHVSK 201

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPAC3C7.14c obr1 "ubiquitinated histone-like protein Uhp1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 34/65 (52%), Positives = 44/65 (67%)

Query:     1 LTAVTQLAHHDMLFLPLGY-NFGRGMFKLDEVKGGSSYGAGRFA-ADGSRQPAELELEQA 58
             LTA+T   HH M+F+PLGY N    M  ++ + GGSS+GAG +A ADGSR  ++ ELE A
Sbjct:   129 LTAMTSFVHHGMIFVPLGYKNTFSLMANVESIHGGSSWGAGSYAGADGSRNVSDDELEIA 188

Query:    59 FHQGE 63
               QGE
Sbjct:   189 RIQGE 193

GO:0000785 "chromatin" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030466 "chromatin silencing at silent mating-type cassette" evidence=IGI

GO:0033554 "cellular response to stress" evidence=IEP

GO:0042393 "histone binding" evidence=IPI

GO:0071238 "cellular response to brefeldin A" evidence=IMP

SGD|S000002439 PST2 "Protein with similarity to a family of flavodoxin-like proteins" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 33/73 (45%), Positives = 48/73 (65%)

Query:     1 LTAVTQLAHHDMLFLPLGY-NFGRGMFKLDEVKGGSSYGAGRFA-ADGSRQPAELELEQA 58
             + +++ LAHH ++F+PLGY N    +  +DEV GGS +GAG  A +DGSR P+ LEL+  
Sbjct:   125 MNSLSTLAHHGIIFVPLGYKNVFAELTNMDEVHGGSPWGAGTIAGSDGSRSPSALELQVH 184

Query:    59 FHQGEYVGE-IAK 70
               QG+   E +AK
Sbjct:   185 EIQGKTFYETVAK 197

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0045121 "membrane raft" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00091203 hypothetical protein (203 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	74
PRK03767	200	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase	2e-20
TIGR01755	197	TIGR01755, flav_wrbA, NAD(P)H:quinone oxidoreducta	2e-17
COG0655	207	COG0655, WrbA, Multimeric flavodoxin WrbA [General	5e-06

>gnl|CDD|179647 PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional

 Score = 79.6 bits (197), Expect = 2e-20
 Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 1   LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFA-ADGSRQPAELELEQAF 59
            +  T L HH M+ + L Y F +G   +DEV GGS YGA   A  DGSRQP+E EL  A 
Sbjct: 127 TSTHTTLLHHGMVIVGLPYAF-QGQMDVDEVTGGSPYGATTIAGGDGSRQPSENELAGAR 185

Query: 60  HQGEYVGEIAKELK 73
           +QG +V EIA +L 
Sbjct: 186 YQGRHVAEIAAKLA 199

Length = 200

>gnl|CDD|130816 TIGR01755, flav_wrbA, NAD(P)H:quinone oxidoreductase, type IV

 Score = 71.9 bits (176), Expect = 2e-17
 Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 2/73 (2%)

Query: 1   LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFA-ADGSRQPAELELEQAF 59
           L+  T L HH M+ +PL Y   +    +DEV+GGS YGA   A  DGSRQP+  EL+ A 
Sbjct: 126 LSTWTTLLHHGMIIVPLPYAA-QEQMGVDEVRGGSPYGATTIAGGDGSRQPSAEELDIAR 184

Query: 60  HQGEYVGEIAKEL 72
           +QG +V  +A +L
Sbjct: 185 YQGRHVAGLAAKL 197

This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected [Energy metabolism, Electron transport]. Length = 197

>gnl|CDD|223728 COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]

 Score = 41.3 bits (97), Expect = 5e-06
 Identities = 23/68 (33%), Positives = 33/68 (48%)

Query: 7   LAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVG 66
             HH M+ + LGY        +D +KGG  YGA     +   +P+ L L+ A   G+ V 
Sbjct: 140 FLHHGMIVVGLGYGNAVVGSGVDLIKGGDPYGAVTQDEEDLSRPSALGLKMARLLGKIVA 199

Query: 67  EIAKELKH 74
           E A +LK 
Sbjct: 200 ENAAKLKR 207

Length = 207

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
KOG3135	203	consensus 1,4-benzoquinone reductase-like; Trp rep	99.94
TIGR01755	197	flav_wrbA NAD(P)H:quinone oxidoreductase, type IV.	99.83
PRK03767	200	NAD(P)H:quinone oxidoreductase; Provisional	99.81
COG0655	207	WrbA Multimeric flavodoxin WrbA [General function	99.0
PRK09267	169	flavodoxin FldA; Validated	95.22
PRK06242	150	flavodoxin; Provisional	93.87

>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]

Probab=99.94  E-value=1.3e-27  Score=159.79  Aligned_cols=73  Identities=63%  Similarity=1.057  Sum_probs=68.6

Q ss_pred             ChhhHHHHhcCcEEecCCCCC-CCCCccccccccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 040983            1 LTAVTQLAHHDMLFLPLGYNF-GRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAKELK   73 (74)
Q Consensus         1 ls~~~~~~hhGMI~Vglgy~~-~~~~~~~~~~~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~~l~   73 (74)
                      ++.++.|.|||||+||+||+. ...|+++++++||||||++++++ |+||+|++.||++|++||+.+++++|||+
T Consensus       127 lta~t~LvHHGmifVPlGYkn~~a~m~~me~V~Ggsp~GAGt~Ag~DGsR~ps~lEL~~a~~qGk~f~~~~kkl~  201 (203)
T KOG3135|consen  127 LTAITQLVHHGMIFVPLGYKNFGAEMFEMEEVHGGSPWGAGTFAGIDGSREPSELELQQAEIQGKYFAEIVKKLK  201 (203)
T ss_pred             HHHHHHHHhcceEEEecccchhhhhhhhhhcccCCCCCCCceeecCCCCCCCCHHHHHHHHHhhHHHHHHHHHhc
Confidence            478999999999999999984 44678999999999999999999 99999999999999999999999999996

>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV

Probab=99.83  E-value=1.1e-20  Score=126.92  Aligned_cols=70  Identities=46%  Similarity=0.691  Sum_probs=62.5

Q ss_pred             hhhHHHHhcCcEEecCCCCCCCCCccccccccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 040983            2 TAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAKEL   72 (74)
Q Consensus         2 s~~~~~~hhGMI~Vglgy~~~~~~~~~~~~~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~~l   72 (74)
                      ++..++.||||+|||.||..+. .++.++++||+|||++++++ ++++.|++.|+++|++||+|||++|+||
T Consensus       127 ~l~~~l~~~Gm~vv~~~~~~~~-~~~~~~~~gg~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~a~~l  197 (197)
T TIGR01755       127 STWTTLLHHGMIIVPLPYAAQE-QMGVDEVRGGSPYGATTIAGGDGSRQPSAEELDIARYQGRHVAGLAAKL  197 (197)
T ss_pred             HHHHHHHHCCCEEeCCCccccc-ccccccccCCCCcceeeEcCCCCCCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence            4677889999999999997544 35667779999999999999 8888999999999999999999999986

This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.

>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional

Probab=99.81  E-value=1.2e-19  Score=121.52  Aligned_cols=71  Identities=49%  Similarity=0.701  Sum_probs=62.5

Q ss_pred             hhhHHHHhcCcEEecCCCCCCCCCccccccccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 040983            2 TAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAKELK   73 (74)
Q Consensus         2 s~~~~~~hhGMI~Vglgy~~~~~~~~~~~~~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~~l~   73 (74)
                      ++..++.||||+|||.+|.... .++.+.+++|+|||++++++ |+.+.|++.|+++|++||+|||++|+||+
T Consensus       128 ~l~~~~~~~gm~vv~~~~~~~~-~~~~~~~~~g~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~~~~~~  199 (200)
T PRK03767        128 STHTTLLHHGMVIVGLPYAFQG-QMDVDEVTGGSPYGATTIAGGDGSRQPSENELAGARYQGRHVAEIAAKLA  199 (200)
T ss_pred             HHHHHHHHcCCEEeCCCCcccc-ccccccccCCcccceeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            4677889999999999987543 24455669999999999999 88889999999999999999999999996

>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]

Probab=99.00  E-value=1.4e-09  Score=73.25  Aligned_cols=71  Identities=37%  Similarity=0.460  Sum_probs=58.4

Q ss_pred             hhhHHHHhcCcEEecCCCCCCCCCccccccccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 040983            2 TAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAKELK   73 (74)
Q Consensus         2 s~~~~~~hhGMI~Vglgy~~~~~~~~~~~~~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~~l~   73 (74)
                      ++..++.||||++|+.+|.....-...+...+|+|||+.+.+. +.++ +.+.++++++.+|+++++.+.++.
T Consensus       135 ~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  206 (207)
T COG0655         135 SLLLFFLHHGMIVVGLGYGNAVVGSGVDLIKGGDPYGAVTQDEEDLSR-PSALGLKMARLLGKIVAENAAKLK  206 (207)
T ss_pred             HHHHHHHHcCCeEecccccccccCcccccccCCCCcccceeccccccc-cchHHHHHHHHHHHHHHHHHHhhc
Confidence            6789999999999999997533100233458999999999999 6655 889999999999999999998875

>PRK09267 flavodoxin FldA; Validated

Probab=95.22  E-value=0.099  Score=33.67  Aligned_cols=57  Identities=19%  Similarity=0.279  Sum_probs=37.1

Q ss_pred             HHHHhcCcEEecC----CCCCCCCCccccccccCccccceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 040983            5 TQLAHHDMLFLPL----GYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAKEL   72 (74)
Q Consensus         5 ~~~~hhGMI~Vgl----gy~~~~~~~~~~~~~gGspyGa~~~a~d~~~~p~~~el~~A~~~G~rva~ia~~l   72 (74)
                      ..+.++|+++|+.    ||.....    ..++++++||...   |.+++|...|.+++    +.+.+|.+.+
T Consensus       107 ~~l~~~g~~~vg~~~~~gy~~~~~----~~~~~~~~~g~~~---d~~~~~~~td~~i~----~w~~~i~~~~  167 (169)
T PRK09267        107 DIVEPRGATIVGHWPTDGYTFEAS----KAVDDGKFVGLAL---DEDNQSELTDERIE----AWVKQIKPEF  167 (169)
T ss_pred             HHHHHCCCEEECccCCCCcccccc----ceeeCCEEEEEEe---cCCCchhhhHHHHH----HHHHHHHHHh
Confidence            4567889999998    8876432    2346899999874   55556666665555    4444455443

>PRK06242 flavodoxin; Provisional

Probab=93.87  E-value=0.16  Score=31.82  Aligned_cols=19  Identities=32%  Similarity=0.358  Sum_probs=17.2

Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 040983           48 RQPAELELEQAFHQGEYVG   66 (74)
Q Consensus        48 ~~p~~~el~~A~~~G~rva   66 (74)
                      ..|+++|++.|+.+|++++
T Consensus       129 ~~p~~~d~~~~~~~gk~l~  147 (150)
T PRK06242        129 GHPNEKDLENAKEFAENLK  147 (150)
T ss_pred             CCcCHHHHHHHHHHHHHHh
Confidence            4699999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	74
3b6i_A	198	Wrba From Escherichia Coli, Native Structure Length		2e-11

>pdb|3B6I|A Chain A, Wrba From Escherichia Coli, Native Structure Length = 198

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 5   TQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGE 63
           T LAHH M+ +P+GY   + +F + +V+GG+ YGA   A  DGSRQP++ EL  A +QGE
Sbjct: 129 TTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGE 187
Query: 64  YVGEIAKELK 73
           YV  +A +L 
Sbjct: 188 YVAGLAVKLN 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	74
3b6i_A	198	Flavoprotein WRBA; flavoproteins, NADH:quinone oxi	6e-22
2a5l_A	200	Trp repressor binding protein WRBA; APC5760, PA094	1e-19
2zki_A	199	199AA long hypothetical Trp repressor binding prot	8e-19
1ydg_A	211	Trp repressor binding protein WRBA; tetramer, stru	2e-17
3d7n_A	193	Flavodoxin, WRBA-like protein; structural genomics	6e-16
2ark_A	188	Flavodoxin; FMN, structural genomics, PSI, structu	7e-13

>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A* Length = 198

 Score = 82.9 bits (205), Expect = 6e-22
 Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 1   LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFA-ADGSRQPAELELEQAF 59
            +  T LAHH M+ +P+GY     +F + +V+GG+ YGA   A  DGSRQP++ EL  A 
Sbjct: 125 TSTWTTLAHHGMVIVPIGYAAQ-ELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIAR 183

Query: 60  HQGEYVGEIAKELK 73
           +QGEYV  +A +L 
Sbjct: 184 YQGEYVAGLAVKLN 197

>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A* Length = 200

 Score = 77.0 bits (190), Expect = 1e-19
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 1   LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFA-ADGSRQPAELELEQAF 59
           L+ +  L HH ML L + Y+    +   +   GG+ YGA  FA ADG R   E EL    
Sbjct: 129 LSMLLPLLHHGMLVLGIPYSEPALL---ETRGGGTPYGASHFAGADGKRSLDEHELTLCR 185

Query: 60  HQGEYVGEIAKELK 73
             G+ + E A +L 
Sbjct: 186 ALGKRLAETAGKLG 199

>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii} Length = 199

 Score = 74.7 bits (184), Expect = 8e-19
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 1   LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFH 60
           LT  T   H  M+ +P+GY             GG  YGA         +  E+E + A  
Sbjct: 128 LTMSTYAYHFGMIIVPIGYGIPELF---QTTTGGGPYGATHLG--SKEELDEMERKIARF 182

Query: 61  QGEYVGEIAKELKH 74
           QG+ + E+AK +K 
Sbjct: 183 QGKRITEVAKAIKC 196

>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A* Length = 211

 Score = 71.7 bits (176), Expect = 2e-17
 Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 7/74 (9%)

Query: 1   LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFH 60
            T      H   +  P GY       ++    GG+ YGA   A    +   E +     H
Sbjct: 136 QTLYMTAMHWGAVLTPPGYTD-----EVIFKSGGNPYGASVTA--NGQPLLENDRASIRH 188

Query: 61  QGEYVGEIAKELKH 74
           Q     E+  +L  
Sbjct: 189 QVRRQVELTAKLLE 202

>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens} Length = 193

 Score = 67.0 bits (164), Expect = 6e-16
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 1   LTAVTQLAHHDMLFLPLGYNFG--RGMFKLDEVKGGSSYGAGRFAADGSRQPAEL---EL 55
              V     H  L++ LG      +   + D  + GS        +D    P E+   +L
Sbjct: 112 QYLVLLAGQHGGLWVSLGIKPSNLKSSVRNDANRMGSYIAPM-AQSDADAAPEEMSVGDL 170

Query: 56  EQAFHQGEYVGEIAKELK 73
           E A   G  V  +A++ K
Sbjct: 171 ETARLYGARVANVARQHK 188

>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8 Length = 188

 Score = 58.9 bits (143), Expect = 7e-13
 Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 12/74 (16%)

Query: 1   LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFH 60
           ++ +T L +   L   +    G+        K    YGA           +E E E    
Sbjct: 109 MSILTMLMNFGFLVFGVTDYVGK--------KFTLHYGAV----VAGEPRSEEEKEACRR 156

Query: 61  QGEYVGEIAKELKH 74
            G  + E       
Sbjct: 157 LGRRLAEWVAIFVD 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	74
3d7n_A	193	Flavodoxin, WRBA-like protein; structural genomics	99.26
3b6i_A	198	Flavoprotein WRBA; flavoproteins, NADH:quinone oxi	99.15
2a5l_A	200	Trp repressor binding protein WRBA; APC5760, PA094	98.65
2zki_A	199	199AA long hypothetical Trp repressor binding prot	98.57
1ydg_A	211	Trp repressor binding protein WRBA; tetramer, stru	98.47
2ark_A	188	Flavodoxin; FMN, structural genomics, PSI, structu	97.36
3cit_A	160	Sensor histidine kinase; MEGA: 3.30.450.40, struct	88.44
3fni_A	159	Putative diflavin flavoprotein A 3; alpha-beta pro	84.04
3hly_A	161	Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein	83.79

>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}

Probab=99.26  E-value=9.5e-12  Score=81.11  Aligned_cols=72  Identities=22%  Similarity=0.191  Sum_probs=46.0

Q ss_pred             hhhHHHHhcCcEEecCCCCCCCC--CccccccccCccccceeEec-CCCC-CCCHHHHHHHHHHHHHHHHHHHHhh
Q 040983            2 TAVTQLAHHDMLFLPLGYNFGRG--MFKLDEVKGGSSYGAGRFAA-DGSR-QPAELELEQAFHQGEYVGEIAKELK   73 (74)
Q Consensus         2 s~~~~~~hhGMI~Vglgy~~~~~--~~~~~~~~gGspyGa~~~a~-d~~~-~p~~~el~~A~~~G~rva~ia~~l~   73 (74)
                      ++..++.||||+||+.+|.....  ....+.+++|+|||++++++ |+.+ .|+++|++.|+.+|+|+|+++++|+
T Consensus       113 ~l~~~l~~~G~~~vg~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~d~~~l~~a~~~G~~la~~~~~l~  188 (193)
T 3d7n_A          113 YLVLLAGQHGGLWVSLGIKPSNLKSSVRNDANRMGSYIAPMAQSDADAAPEEMSVGDLETARLYGARVANVARQHK  188 (193)
T ss_dssp             HHHHHHHHTTCEECCCC-------------------CCSCEEEC-------CCCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHCCCEEeCCccCcccccccccccCCCCCCcceeeEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            46788999999999998864210  00012237799999999986 6644 4789999999999999999999985

>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*

Probab=99.15  E-value=2.2e-10  Score=73.63  Aligned_cols=71  Identities=46%  Similarity=0.787  Sum_probs=58.7

Q ss_pred             hhHHHHhcCcEEecCCCCCCCCCccccccccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 040983            3 AVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAKELKH   74 (74)
Q Consensus         3 ~~~~~~hhGMI~Vglgy~~~~~~~~~~~~~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~~l~~   74 (74)
                      +..++.++||++|+.++..+. +...++++++++||.+++++ ++...|+++|++.|+.+|+++++.+++|+.
T Consensus       127 l~~~l~~~g~~~v~~~~~~~~-~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~a~~~g~~la~~~~~~~~  198 (198)
T 3b6i_A          127 TWTTLAHHGMVIVPIGYAAQE-LFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG  198 (198)
T ss_dssp             HHHHHHHTTCEECCCTTCSGG-GGCCSSCCCCBTTBCEEECCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCcEEECCCCCccc-ccccccccCCCCCCcceecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            556889999999999986533 23334568899999999988 666689999999999999999999999863

>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*

Probab=98.65  E-value=9.5e-08  Score=61.23  Aligned_cols=69  Identities=36%  Similarity=0.536  Sum_probs=50.0

Q ss_pred             hhHHHHhcCcEEecCCCCCCCCCccccccccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 040983            3 AVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAKELKH   74 (74)
Q Consensus         3 ~~~~~~hhGMI~Vglgy~~~~~~~~~~~~~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~~l~~   74 (74)
                      +..++.++||.+|+.++.++. +  .+.++++++||...+++ ++...|++++++.|+.+|+++++.+++|+.
T Consensus       131 l~~~l~~~g~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~g~~l~~~~~~~~~  200 (200)
T 2a5l_A          131 MLLPLLHHGMLVLGIPYSEPA-L--LETRGGGTPYGASHFAGADGKRSLDEHELTLCRALGKRLAETAGKLGS  200 (200)
T ss_dssp             HHHHHHHTTCEECCCCC---------------CTTSBCCBCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCCEEECCCCCCcc-c--cccccCCCCcceeeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence            456778899999998876443 2  23347789999999887 665679999999999999999999999863

>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}

Probab=98.57  E-value=1.1e-07  Score=61.17  Aligned_cols=66  Identities=32%  Similarity=0.579  Sum_probs=52.2

Q ss_pred             hhHHHHhcCcEEecCCCCCCCCCccccccccCccccceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 040983            3 AVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAKELK   73 (74)
Q Consensus         3 ~~~~~~hhGMI~Vglgy~~~~~~~~~~~~~gGspyGa~~~a~d~~~~p~~~el~~A~~~G~rva~ia~~l~   73 (74)
                      +..++.++||.+|+.++..+. +.++.  +++++||.+.+++..  .|++++++.|+.+|+++++.+++|+
T Consensus       130 l~~~l~~~g~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~a~~~g~~l~~~~~~l~  195 (199)
T 2zki_A          130 MSTYAYHFGMIIVPIGYGIPE-LFQTT--TGGGPYGATHLGSKE--ELDEMERKIARFQGKRITEVAKAIK  195 (199)
T ss_dssp             HTHHHHHHTCEECCCTTCSTH-HHHCS--SSCCSSCCCCBSSCS--SCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCeEEeCCCcCCcc-ccccc--cCCCCcceeeecCCC--CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            456888999999998876433 22223  778999998776521  5889999999999999999999886

>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*

Probab=98.47  E-value=3.2e-07  Score=59.65  Aligned_cols=64  Identities=23%  Similarity=0.247  Sum_probs=51.1

Q ss_pred             hhHHHHhcCcEEecCCCCCCCCCccccccccCccccceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 040983            3 AVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAKELK   73 (74)
Q Consensus         3 ~~~~~~hhGMI~Vglgy~~~~~~~~~~~~~gGspyGa~~~a~d~~~~p~~~el~~A~~~G~rva~ia~~l~   73 (74)
                      +..++.++||.+|+.+|.++..   ..  ++|++||+..+.++  ..|++++++.|+.+|+++++.+++|+
T Consensus       138 l~~~l~~~g~~~v~~~~~~~~~---~~--~~~~~~g~~~~~~~--~~p~~~~~~~a~~~g~~l~~~~~~~~  201 (211)
T 1ydg_A          138 LYMTAMHWGAVLTPPGYTDEVI---FK--SGGNPYGASVTANG--QPLLENDRASIRHQVRRQVELTAKLL  201 (211)
T ss_dssp             HHHHHHTTTCEECCCTTCSHHH---HH--TTCCSSSCEEECCS--SCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCEEeCCCCCChhh---cc--CCCCCccceeecCC--CCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            5678889999999988764321   12  67899999887642  35889999999999999999999885

>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8

Probab=97.36  E-value=0.00023  Score=45.52  Aligned_cols=58  Identities=24%  Similarity=0.235  Sum_probs=40.2

Q ss_pred             hhHHHHhcCcEEecCCCCCCCCCccccccccCccccceeEecCCCCCCC-HHHHHHHHHHHHHHHHHHHHhh
Q 040983            3 AVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPA-ELELEQAFHQGEYVGEIAKELK   73 (74)
Q Consensus         3 ~~~~~~hhGMI~Vglgy~~~~~~~~~~~~~gGspyGa~~~a~d~~~~p~-~~el~~A~~~G~rva~ia~~l~   73 (74)
                      +..++.++||.+++.++-...        ...++||.....     .|+ +++++.|+.+|+++++.+++++
T Consensus       111 l~~~l~~~g~~~~~~~~~~~~--------~~~~~~g~~~~~-----~p~~~~~~~~~~~~g~~la~~~~~~~  169 (188)
T 2ark_A          111 ILTMLMNFGFLVFGVTDYVGK--------KFTLHYGAVVAG-----EPRSEEEKEACRRLGRRLAEWVAIFV  169 (188)
T ss_dssp             HHHHHHHTTCEECCEEEEEET--------TEEESSSEEEES-----SCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCcEEeCCCccccc--------cccCCCcceeec-----CCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            455677899999985431100        112356654432     377 9999999999999999999875

>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}

Probab=88.44  E-value=1.4  Score=28.21  Aligned_cols=37  Identities=14%  Similarity=0.113  Sum_probs=29.6

Q ss_pred             cCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHH
Q 040983           33 GGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIA   69 (74)
Q Consensus        33 gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia   69 (74)
                      .|.+.|+.-+.+ .+...|+++|++..+.++..+|...
T Consensus       108 ~g~~~Gvlql~N~~~~~~f~~eD~e~l~lLA~~~a~ai  145 (160)
T 3cit_A          108 DEGSFGTLVLANSVAISAPDGEDIESLQLLATLLAAHL  145 (160)
T ss_dssp             SSSEEEEEEEEESSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            378999888877 3335799999999999998887543

>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A

Probab=84.04  E-value=1.3  Score=27.40  Aligned_cols=22  Identities=18%  Similarity=0.264  Sum_probs=19.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Q 040983           49 QPAELELEQAFHQGEYVGEIAK   70 (74)
Q Consensus        49 ~p~~~el~~A~~~G~rva~ia~   70 (74)
                      .|+++|++.|+.+|+.+++-.+
T Consensus       127 ~P~~~dl~~~~~~g~~la~~~~  148 (159)
T 3fni_A          127 TPTENTYKLCEEAGTDLGQWVT  148 (159)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999987654

>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}

Probab=83.79  E-value=1.1  Score=27.52  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=20.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Q 040983           49 QPAELELEQAFHQGEYVGEIAKE   71 (74)
Q Consensus        49 ~p~~~el~~A~~~G~rva~ia~~   71 (74)
                      .|+++|++.|+.+|+.+++..++
T Consensus       122 ~P~~~dl~~~~~~g~~la~~l~~  144 (161)
T 3hly_A          122 QPTEAIYQQCEESGTDLGQWLTR  144 (161)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh
Confidence            59999999999999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	74
d2a5la1	196	c.23.5.8 (A:3-198) Trp repressor binding protein W	6e-13
d1ydga_	201	c.23.5.8 (A:) Trp repressor binding protein WrbA {	3e-09
d2arka1	184	c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolic	1e-04

>d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 58.4 bits (140), Expect = 6e-13
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 1   LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFA-ADGSRQPAELELEQAF 59
           L+ +  L HH ML L + Y+       L+   GG+ YGA  FA ADG R   E EL    
Sbjct: 125 LSMLLPLLHHGMLVLGIPYSE---PALLETRGGGTPYGASHFAGADGKRSLDEHELTLCR 181

Query: 60  HQGEYVGEIAKELK 73
             G+ + E A +L 
Sbjct: 182 ALGKRLAETAGKLG 195

>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]} Length = 201

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 48.7 bits (115), Expect = 3e-09
 Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 7/74 (9%)

Query: 1   LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFH 60
            T      H   +  P GY             GG+ YGA   A    +   E +     H
Sbjct: 132 QTLYMTAMHWGAVLTPPGYTDEVIF-----KSGGNPYGASVTA--NGQPLLENDRASIRH 184

Query: 61  QGEYVGEIAKELKH 74
           Q     E+  +L  
Sbjct: 185 QVRRQVELTAKLLE 198

>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Flavodoxin FldA
species: Aquifex aeolicus [TaxId: 63363]

 Score = 35.9 bits (82), Expect = 1e-04
 Identities = 13/74 (17%), Positives = 20/74 (27%), Gaps = 12/74 (16%)

Query: 1   LTAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFH 60
           ++ +T L +   L   +    G         K    YGA           +E E E    
Sbjct: 106 MSILTMLMNFGFLVFGVTDYVG--------KKFTLHYGAVV----AGEPRSEEEKEACRR 153

Query: 61  QGEYVGEIAKELKH 74
            G  + E       
Sbjct: 154 LGRRLAEWVAIFVD 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	74
d1ydga_	201	Trp repressor binding protein WrbA {Deinococcus ra	99.41
d2a5la1	196	Trp repressor binding protein WrbA {Pseudomonas ae	99.35
d2arka1	184	Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]}	99.19
d1e5da1	152	Rubredoxin oxygen:oxidoreductase (ROO), C-terminal	93.73
d1ycga1	149	Nitric oxide reductase C-terminal domain {Moorella	92.52

>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.41  E-value=7.7e-14  Score=90.16  Aligned_cols=65  Identities=25%  Similarity=0.243  Sum_probs=55.0

Q ss_pred             hhhHHHHhcCcEEecCCCCCCCCCccccccccCccccceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 040983            2 TAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAKELK   73 (74)
Q Consensus         2 s~~~~~~hhGMI~Vglgy~~~~~~~~~~~~~gGspyGa~~~a~d~~~~p~~~el~~A~~~G~rva~ia~~l~   73 (74)
                      ++..+++||||+||+.++.....   ..  .+|+|||+++++++.  .|+++|++.||.+|||+|++++||+
T Consensus       133 ~~~~~~~~~g~~~v~~~~~~~~~---~~--~gg~~~G~~~~~~~~--~~~e~~l~~ar~lGk~la~~a~kL~  197 (201)
T d1ydga_         133 TLYMTAMHWGAVLTPPGYTDEVI---FK--SGGNPYGASVTANGQ--PLLENDRASIRHQVRRQVELTAKLL  197 (201)
T ss_dssp             HHHHHHHTTTCEECCCTTCSHHH---HH--TTCCSSSCEEECCSS--CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCccccccccchhh---hc--CCCcccCcceecCCC--CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999875331   12  789999999998733  5889999999999999999999995

>d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.35  E-value=1.1e-12  Score=83.37  Aligned_cols=70  Identities=34%  Similarity=0.492  Sum_probs=53.5

Q ss_pred             hhhHHHHhcCcEEecCCCCCCCCCccccccccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 040983            2 TAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAKELKH   74 (74)
Q Consensus         2 s~~~~~~hhGMI~Vglgy~~~~~~~~~~~~~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~~l~~   74 (74)
                      ++..++.+|||+||+..+..... .  ....++++||+..+.+ ++...|++.+++.|+.+|||+|++++||++
T Consensus       126 ~~~~~~~~~~~~~vg~~~~~~~~-~--~~~~~~~~~g~~~~~~~~~~~~~~e~~l~~A~~lGk~lA~~ak~l~~  196 (196)
T d2a5la1         126 SMLLPLLHHGMLVLGIPYSEPAL-L--ETRGGGTPYGASHFAGADGKRSLDEHELTLCRALGKRLAETAGKLGS  196 (196)
T ss_dssp             HHHHHHHHTTCEECCCCC---------------CTTSBCCBCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhhceeeeccccchhhh-h--hcccCCcccceeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            46789999999999988765442 2  3347899999999999 777789999999999999999999999975

>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Flavodoxin FldA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.19  E-value=7.3e-12  Score=80.97  Aligned_cols=60  Identities=22%  Similarity=0.190  Sum_probs=48.5

Q ss_pred             hhhHHHHhcCcEEecCCCCCCCCCccccccccCccccceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 040983            2 TAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAKELK   73 (74)
Q Consensus         2 s~~~~~~hhGMI~Vglgy~~~~~~~~~~~~~gGspyGa~~~a~d~~~~p~~~el~~A~~~G~rva~ia~~l~   73 (74)
                      ++.++++||||+|||.++....        ..+++||+....    .+|+++|++.|+.+|+|||+++++|.
T Consensus       107 ~~~~~l~~~G~~vvg~~~~~~~--------~~~~~~g~~~~~----~~~~~~dl~~a~~lGk~lAe~~~~l~  166 (184)
T d2arka1         107 SILTMLMNFGFLVFGVTDYVGK--------KFTLHYGAVVAG----EPRSEEEKEACRRLGRRLAEWVAIFV  166 (184)
T ss_dssp             HHHHHHHHTTCEECCEEEEEET--------TEEESSSEEEES----SCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhhhHhhhCCCEEecccccccc--------ccCCCCCcccCC----CCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999997654222        336889986654    36899999999999999999999884

>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=93.73  E-value=0.045  Score=31.96  Aligned_cols=25  Identities=16%  Similarity=0.271  Sum_probs=20.5

Q ss_pred             CCCHHHHHHHHHHHHHHHH-HHHHhh
Q 040983           49 QPAELELEQAFHQGEYVGE-IAKELK   73 (74)
Q Consensus        49 ~p~~~el~~A~~~G~rva~-ia~~l~   73 (74)
                      .|++.|++.|+.+|+++++ |-++++
T Consensus       126 ~p~~~~~~~~~e~g~~i~~~lk~k~~  151 (152)
T d1e5da1         126 VPTHADYEQLKTMAQTIARALKAKLA  151 (152)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5899999999999999997 444544

>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Nitric oxide reductase C-terminal domain
species: Moorella thermoacetica [TaxId: 1525]

Probab=92.52  E-value=0.1  Score=30.18  Aligned_cols=19  Identities=16%  Similarity=0.434  Sum_probs=16.9

Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 040983           49 QPAELELEQAFHQGEYVGE   67 (74)
Q Consensus        49 ~p~~~el~~A~~~G~rva~   67 (74)
                      .|+++|++.|+.+|+++|+
T Consensus       127 ~P~~~dl~~~~e~g~~ia~  145 (149)
T d1ycga1         127 VPRGEDLQRCYELGRKIAA  145 (149)
T ss_dssp             SCCHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHH
Confidence            4899999999999999864